Multiple sequence alignment - TraesCS2A01G474000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G474000 chr2A 100.000 7537 0 0 1 7537 715344047 715336511 0.000000e+00 13919.0
1 TraesCS2A01G474000 chr2D 90.968 4484 229 78 3155 7535 577156441 577152031 0.000000e+00 5875.0
2 TraesCS2A01G474000 chr2D 92.718 2925 107 60 103 3005 577159379 577156539 0.000000e+00 4124.0
3 TraesCS2A01G474000 chr2D 84.259 108 8 5 3049 3151 577156453 577156350 6.220000e-16 97.1
4 TraesCS2A01G474000 chr2B 93.153 3257 133 48 3960 7164 694057611 694054393 0.000000e+00 4697.0
5 TraesCS2A01G474000 chr2B 91.504 3025 131 73 2 2999 694061457 694058532 0.000000e+00 4047.0
6 TraesCS2A01G474000 chr2B 87.273 715 36 18 3173 3854 694058406 694057714 0.000000e+00 765.0
7 TraesCS2A01G474000 chr2B 89.556 383 28 8 7146 7528 694054138 694053768 6.840000e-130 475.0
8 TraesCS2A01G474000 chr2B 100.000 42 0 0 7349 7390 694054177 694054136 2.250000e-10 78.7
9 TraesCS2A01G474000 chr7A 87.124 233 28 2 4348 4579 436696047 436696278 5.800000e-66 263.0
10 TraesCS2A01G474000 chr7A 81.985 272 49 0 5610 5881 436697131 436697402 1.640000e-56 231.0
11 TraesCS2A01G474000 chr7A 88.430 121 12 2 3735 3854 436695809 436695928 2.190000e-30 145.0
12 TraesCS2A01G474000 chr7A 93.182 44 2 1 6834 6877 436698531 436698573 6.310000e-06 63.9
13 TraesCS2A01G474000 chr7B 86.695 233 29 2 4348 4579 381826318 381826549 2.700000e-64 257.0
14 TraesCS2A01G474000 chr7B 82.308 260 44 2 5623 5881 381827418 381827676 2.740000e-54 224.0
15 TraesCS2A01G474000 chr7B 88.430 121 12 2 3735 3854 381826104 381826223 2.190000e-30 145.0
16 TraesCS2A01G474000 chr7B 93.182 44 2 1 6834 6877 381828806 381828848 6.310000e-06 63.9
17 TraesCS2A01G474000 chr7D 81.319 273 49 2 5610 5881 386728682 386728953 3.540000e-53 220.0
18 TraesCS2A01G474000 chr7D 88.430 121 12 2 3735 3854 386727362 386727481 2.190000e-30 145.0
19 TraesCS2A01G474000 chr7D 97.222 36 0 1 6842 6877 386730094 386730128 8.170000e-05 60.2
20 TraesCS2A01G474000 chr6B 87.302 63 7 1 2538 2599 623084250 623084188 3.770000e-08 71.3
21 TraesCS2A01G474000 chr6A 87.097 62 7 1 2538 2598 558788759 558788698 1.360000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G474000 chr2A 715336511 715344047 7536 True 13919.000000 13919 100.0000 1 7537 1 chr2A.!!$R1 7536
1 TraesCS2A01G474000 chr2D 577152031 577159379 7348 True 3365.366667 5875 89.3150 103 7535 3 chr2D.!!$R1 7432
2 TraesCS2A01G474000 chr2B 694053768 694061457 7689 True 2012.540000 4697 92.2972 2 7528 5 chr2B.!!$R1 7526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 902 0.104144 TGTTGGAGGGGAAAGGGAGA 60.104 55.000 0.00 0.0 0.00 3.71 F
1242 1261 0.524862 GCAGGAGTCATTGCTGTTGG 59.475 55.000 10.62 0.0 46.12 3.77 F
2248 2268 1.276705 TCTATGTTTAGCGGCACACCA 59.723 47.619 1.45 0.0 34.57 4.17 F
3321 3412 0.106519 GGGTGGAACTGGATGGATGG 60.107 60.000 0.00 0.0 36.74 3.51 F
3566 3683 0.386838 GCTGCTGTTGCTGGACTTTT 59.613 50.000 0.00 0.0 40.48 2.27 F
3935 4069 0.387239 GTGGTGTCTTGCATTTCGGC 60.387 55.000 0.00 0.0 0.00 5.54 F
3941 4075 0.597568 TCTTGCATTTCGGCTGTTGG 59.402 50.000 0.00 0.0 34.04 3.77 F
4079 4271 0.676782 GCCCACACACTCCCATACAC 60.677 60.000 0.00 0.0 0.00 2.90 F
4080 4272 0.690192 CCCACACACTCCCATACACA 59.310 55.000 0.00 0.0 0.00 3.72 F
4115 4307 1.002990 CAGTCAGGTCATGCAGGCA 60.003 57.895 0.00 0.0 0.00 4.75 F
4116 4308 1.025113 CAGTCAGGTCATGCAGGCAG 61.025 60.000 0.00 0.0 0.00 4.85 F
5863 6134 1.030488 TCTTCGACTTCCTCCGCGAT 61.030 55.000 8.23 0.0 32.38 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 2199 1.014044 CAAGTCGCAGTACACCGCAT 61.014 55.000 0.00 0.0 0.00 4.73 R
3135 3222 0.458260 GGAACCCAACAACAAGCGTT 59.542 50.000 0.00 0.0 35.01 4.84 R
3537 3654 0.029834 CAACAGCAGCAGTGTGAACC 59.970 55.000 0.00 0.0 0.00 3.62 R
4157 4349 0.463833 GGGGTTTGACTATGGGAGCG 60.464 60.000 0.00 0.0 0.00 5.03 R
5044 5310 0.735978 CGCGTACTGGTTCTGCATGA 60.736 55.000 0.00 0.0 0.00 3.07 R
5580 5850 1.080434 GACGTGGAGCACCTCTGTC 60.080 63.158 0.71 6.6 37.04 3.51 R
5863 6134 2.359975 TCGCTGCGAGAGGTCTCA 60.360 61.111 22.24 0.0 43.00 3.27 R
5959 6237 1.040339 GTCCCACTGCCAACACCAAA 61.040 55.000 0.00 0.0 0.00 3.28 R
6029 6307 3.049674 CAGTTGCCATGGTCGCGT 61.050 61.111 14.67 0.0 0.00 6.01 R
6079 6357 7.738847 TGAGGTTATTGCATGATCAGATTCTA 58.261 34.615 0.09 0.0 0.00 2.10 R
6112 6393 7.872483 GCCAAATCCATGGTTAATTCGATTATT 59.128 33.333 12.58 0.0 42.75 1.40 R
6762 7052 0.035725 GGAGTTTCCCCGGTCGAATT 60.036 55.000 0.00 0.0 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.943381 CACTCTGCTTGCATGGAATAGAA 59.057 43.478 0.00 0.00 0.00 2.10
69 70 3.548770 TCTGCTTGCATGGAATAGAAGG 58.451 45.455 0.00 0.00 0.00 3.46
76 77 6.678900 GCTTGCATGGAATAGAAGGTACAAAG 60.679 42.308 0.00 0.00 0.00 2.77
81 82 7.254932 GCATGGAATAGAAGGTACAAAGTCATC 60.255 40.741 0.00 0.00 0.00 2.92
84 85 7.103641 GGAATAGAAGGTACAAAGTCATCACA 58.896 38.462 0.00 0.00 0.00 3.58
90 91 6.959639 AGGTACAAAGTCATCACAAAATGT 57.040 33.333 0.00 0.00 0.00 2.71
92 93 7.781056 AGGTACAAAGTCATCACAAAATGTTT 58.219 30.769 0.00 0.00 0.00 2.83
93 94 8.908903 AGGTACAAAGTCATCACAAAATGTTTA 58.091 29.630 0.00 0.00 0.00 2.01
94 95 9.522804 GGTACAAAGTCATCACAAAATGTTTAA 57.477 29.630 0.00 0.00 0.00 1.52
96 97 8.114359 ACAAAGTCATCACAAAATGTTTAACG 57.886 30.769 0.00 0.00 0.00 3.18
98 99 9.227490 CAAAGTCATCACAAAATGTTTAACGTA 57.773 29.630 0.00 0.00 0.00 3.57
99 100 9.959749 AAAGTCATCACAAAATGTTTAACGTAT 57.040 25.926 0.00 0.00 0.00 3.06
153 154 6.264067 CCCAAGGATCTCCAAACAATATCTTC 59.736 42.308 0.00 0.00 38.89 2.87
164 165 9.754382 TCCAAACAATATCTTCGTAGTAATACC 57.246 33.333 0.00 0.00 0.00 2.73
206 208 2.812591 ACGTCATATATCGCCGAGAGTT 59.187 45.455 0.00 0.00 0.00 3.01
207 210 3.252701 ACGTCATATATCGCCGAGAGTTT 59.747 43.478 0.00 0.00 0.00 2.66
218 221 3.241552 CGCCGAGAGTTTAAATACACACG 60.242 47.826 0.00 0.00 0.00 4.49
220 223 3.676172 CCGAGAGTTTAAATACACACGCA 59.324 43.478 0.00 0.00 0.00 5.24
363 375 2.411031 CGCCGAGTGAAAATACACACAC 60.411 50.000 0.00 0.00 42.45 3.82
364 376 2.546368 GCCGAGTGAAAATACACACACA 59.454 45.455 0.00 0.00 42.45 3.72
365 377 3.606153 GCCGAGTGAAAATACACACACAC 60.606 47.826 0.00 0.00 42.45 3.82
366 378 3.558006 CCGAGTGAAAATACACACACACA 59.442 43.478 0.00 0.00 42.45 3.72
367 379 4.514506 CGAGTGAAAATACACACACACAC 58.485 43.478 0.00 0.00 42.45 3.82
609 627 3.397955 GTCCCCTTCCTCTAGATCTCTCT 59.602 52.174 0.00 0.00 35.39 3.10
685 703 1.272490 TCCTTCTAGACACAAGCCACG 59.728 52.381 0.00 0.00 0.00 4.94
776 794 2.764128 CCGGGCTGCCTCCTTCTA 60.764 66.667 19.68 0.00 0.00 2.10
805 823 4.731503 GCTGCTCGTGCTGTTGCG 62.732 66.667 16.11 0.00 43.34 4.85
878 896 4.662278 CACTATCTTTGTTGGAGGGGAAA 58.338 43.478 0.00 0.00 0.00 3.13
879 897 4.702131 CACTATCTTTGTTGGAGGGGAAAG 59.298 45.833 0.00 0.00 0.00 2.62
880 898 2.675658 TCTTTGTTGGAGGGGAAAGG 57.324 50.000 0.00 0.00 0.00 3.11
881 899 1.146982 TCTTTGTTGGAGGGGAAAGGG 59.853 52.381 0.00 0.00 0.00 3.95
882 900 1.146982 CTTTGTTGGAGGGGAAAGGGA 59.853 52.381 0.00 0.00 0.00 4.20
883 901 0.777446 TTGTTGGAGGGGAAAGGGAG 59.223 55.000 0.00 0.00 0.00 4.30
884 902 0.104144 TGTTGGAGGGGAAAGGGAGA 60.104 55.000 0.00 0.00 0.00 3.71
920 938 4.946445 AGAGATGCAGATGTGTATGTGAG 58.054 43.478 0.00 0.00 29.42 3.51
1100 1118 2.257409 CTGTCGCTGGGCCAGGTATT 62.257 60.000 33.43 0.00 31.21 1.89
1101 1119 0.978667 TGTCGCTGGGCCAGGTATTA 60.979 55.000 33.43 6.38 31.21 0.98
1102 1120 0.532196 GTCGCTGGGCCAGGTATTAC 60.532 60.000 33.43 15.41 31.21 1.89
1126 1144 8.252964 ACGTTTTGTATATCTCCAGAAAGTTC 57.747 34.615 0.00 0.00 0.00 3.01
1242 1261 0.524862 GCAGGAGTCATTGCTGTTGG 59.475 55.000 10.62 0.00 46.12 3.77
1384 1403 5.863935 GCCGTCTGATTTGCTTCTTTAAATT 59.136 36.000 0.00 0.00 0.00 1.82
1385 1404 6.033937 GCCGTCTGATTTGCTTCTTTAAATTC 59.966 38.462 0.00 0.00 0.00 2.17
1438 1457 7.605691 CACTTTTTGTAGAGATGGAAGAGACAT 59.394 37.037 0.00 0.00 0.00 3.06
1467 1486 6.769512 TCCTTGATTTGCATATAGGAGTACC 58.230 40.000 4.95 0.00 0.00 3.34
1597 1617 4.100189 ACACATAGATTAGGTCACCAGAGC 59.900 45.833 0.00 0.00 42.53 4.09
1634 1654 2.237893 CCCCTTTCTTTAAGACCCGCTA 59.762 50.000 0.00 0.00 35.80 4.26
1744 1764 2.981898 TGATCTTGCACACATCCAGAG 58.018 47.619 0.00 0.00 0.00 3.35
1745 1765 2.286872 GATCTTGCACACATCCAGAGG 58.713 52.381 0.00 0.00 0.00 3.69
1834 1854 8.752005 TCTTCCAAATCTATTGGTCTTTATGG 57.248 34.615 7.07 0.00 40.40 2.74
1863 1883 5.900699 ACCTACCTTCTATTCTTCCTCTTCC 59.099 44.000 0.00 0.00 0.00 3.46
1907 1927 3.063510 TCTTGCTTTCACATCTCTGGG 57.936 47.619 0.00 0.00 0.00 4.45
1911 1931 1.407989 GCTTTCACATCTCTGGGGAGG 60.408 57.143 0.00 0.00 39.86 4.30
1924 1944 2.507058 CTGGGGAGGAAATGAGACATCA 59.493 50.000 0.00 0.00 40.50 3.07
1925 1945 2.918934 TGGGGAGGAAATGAGACATCAA 59.081 45.455 0.00 0.00 39.39 2.57
1926 1946 3.528905 TGGGGAGGAAATGAGACATCAAT 59.471 43.478 0.00 0.00 39.39 2.57
1941 1961 8.277197 TGAGACATCAATAATCAAGGGAGAAAT 58.723 33.333 0.00 0.00 30.61 2.17
1942 1962 8.688747 AGACATCAATAATCAAGGGAGAAATC 57.311 34.615 0.00 0.00 0.00 2.17
1968 1988 3.070748 GTTGCTTCACTTCTTCTCCCTC 58.929 50.000 0.00 0.00 0.00 4.30
1975 1995 1.289530 ACTTCTTCTCCCTCGATCCCT 59.710 52.381 0.00 0.00 0.00 4.20
1981 2001 2.320781 TCTCCCTCGATCCCTGATTTC 58.679 52.381 0.00 0.00 0.00 2.17
1986 2006 2.896685 CCTCGATCCCTGATTTCTAGCT 59.103 50.000 0.00 0.00 0.00 3.32
1987 2007 3.323403 CCTCGATCCCTGATTTCTAGCTT 59.677 47.826 0.00 0.00 0.00 3.74
1988 2008 4.524714 CCTCGATCCCTGATTTCTAGCTTA 59.475 45.833 0.00 0.00 0.00 3.09
1989 2009 5.011125 CCTCGATCCCTGATTTCTAGCTTAA 59.989 44.000 0.00 0.00 0.00 1.85
2116 2136 5.689961 ACGAAATTTTTCCGTTTCATCTTGG 59.310 36.000 0.00 0.00 34.76 3.61
2179 2199 5.892160 ATACGCATACTTTCTCGCCTATA 57.108 39.130 0.00 0.00 0.00 1.31
2245 2265 2.006888 GCTTCTATGTTTAGCGGCACA 58.993 47.619 1.45 0.00 0.00 4.57
2248 2268 1.276705 TCTATGTTTAGCGGCACACCA 59.723 47.619 1.45 0.00 34.57 4.17
2387 2409 1.954146 GAGAGCGGCGACAACAACA 60.954 57.895 12.98 0.00 0.00 3.33
2388 2410 1.495584 GAGAGCGGCGACAACAACAA 61.496 55.000 12.98 0.00 0.00 2.83
2389 2411 1.368850 GAGCGGCGACAACAACAAC 60.369 57.895 12.98 0.00 0.00 3.32
2437 2459 4.201679 CGCGGGCGTGACTCCATA 62.202 66.667 4.64 0.00 34.35 2.74
2629 2657 8.748412 CCAATCTCCTCCACATTTTGTTAATTA 58.252 33.333 0.00 0.00 0.00 1.40
2647 2678 9.865321 TGTTAATTACCACTGTGTATACTCTTC 57.135 33.333 7.08 0.00 0.00 2.87
2651 2682 9.476928 AATTACCACTGTGTATACTCTTCTAGT 57.523 33.333 7.08 0.00 42.62 2.57
2652 2683 8.503458 TTACCACTGTGTATACTCTTCTAGTC 57.497 38.462 7.08 0.00 39.80 2.59
2653 2684 5.887035 ACCACTGTGTATACTCTTCTAGTCC 59.113 44.000 7.08 0.00 39.80 3.85
2656 2687 6.760298 CACTGTGTATACTCTTCTAGTCCGTA 59.240 42.308 4.17 0.00 39.80 4.02
2657 2688 7.279536 CACTGTGTATACTCTTCTAGTCCGTAA 59.720 40.741 4.17 0.00 39.80 3.18
2671 2702 7.928103 TCTAGTCCGTAATTGATTAGTCTCAC 58.072 38.462 0.00 0.00 0.00 3.51
2672 2703 6.777213 AGTCCGTAATTGATTAGTCTCACT 57.223 37.500 0.00 0.00 0.00 3.41
2673 2704 6.797454 AGTCCGTAATTGATTAGTCTCACTC 58.203 40.000 0.00 0.00 0.00 3.51
2674 2705 6.377429 AGTCCGTAATTGATTAGTCTCACTCA 59.623 38.462 0.00 0.00 0.00 3.41
2675 2706 6.472808 GTCCGTAATTGATTAGTCTCACTCAC 59.527 42.308 0.00 0.00 0.00 3.51
2677 2708 6.980978 CCGTAATTGATTAGTCTCACTCACAT 59.019 38.462 0.00 0.00 0.00 3.21
2678 2709 7.168302 CCGTAATTGATTAGTCTCACTCACATC 59.832 40.741 0.00 0.00 0.00 3.06
2679 2710 7.702348 CGTAATTGATTAGTCTCACTCACATCA 59.298 37.037 0.00 0.00 0.00 3.07
2680 2711 9.371136 GTAATTGATTAGTCTCACTCACATCAA 57.629 33.333 0.00 0.00 35.53 2.57
2681 2712 8.489990 AATTGATTAGTCTCACTCACATCAAG 57.510 34.615 0.00 0.00 35.02 3.02
2682 2713 5.414360 TGATTAGTCTCACTCACATCAAGC 58.586 41.667 0.00 0.00 0.00 4.01
2683 2714 4.871933 TTAGTCTCACTCACATCAAGCA 57.128 40.909 0.00 0.00 0.00 3.91
2699 2730 5.941948 TCAAGCATGCTCATTCATATCTG 57.058 39.130 22.93 11.47 0.00 2.90
2702 2733 5.494390 AGCATGCTCATTCATATCTGGTA 57.506 39.130 16.30 0.00 0.00 3.25
2704 2735 4.394300 GCATGCTCATTCATATCTGGTACC 59.606 45.833 11.37 4.43 0.00 3.34
2716 2747 7.963532 TCATATCTGGTACCACTCCTTAATTC 58.036 38.462 11.60 0.00 0.00 2.17
2720 2751 3.579586 TGGTACCACTCCTTAATTCGTGT 59.420 43.478 11.60 0.00 0.00 4.49
2751 2782 8.567285 TCCTTCTTGTTATCTTTCCTTGAATC 57.433 34.615 0.00 0.00 0.00 2.52
2770 2801 6.373779 TGAATCTTCGCTTTGTTCTTGAATC 58.626 36.000 0.00 0.00 0.00 2.52
2775 2806 4.245660 TCGCTTTGTTCTTGAATCGAGAT 58.754 39.130 0.29 0.00 0.00 2.75
2776 2807 4.690748 TCGCTTTGTTCTTGAATCGAGATT 59.309 37.500 0.29 0.00 0.00 2.40
2777 2808 5.018240 CGCTTTGTTCTTGAATCGAGATTC 58.982 41.667 16.52 16.52 45.55 2.52
2804 2839 5.634020 GGAAGCATACGTTGATATACACTCC 59.366 44.000 0.00 0.00 0.00 3.85
2810 2848 4.957296 ACGTTGATATACACTCCCCAATC 58.043 43.478 0.00 0.00 0.00 2.67
2827 2865 6.012113 CCCCAATCCTTAATCATGCTCATTA 58.988 40.000 0.00 0.00 0.00 1.90
2828 2866 6.494491 CCCCAATCCTTAATCATGCTCATTAA 59.506 38.462 0.00 0.00 0.00 1.40
2829 2867 7.015487 CCCCAATCCTTAATCATGCTCATTAAA 59.985 37.037 0.00 0.00 0.00 1.52
2830 2868 8.591072 CCCAATCCTTAATCATGCTCATTAAAT 58.409 33.333 0.00 0.00 0.00 1.40
2870 2908 7.596749 ACTTTTGGTTAATGATCTGTAGTCG 57.403 36.000 0.00 0.00 0.00 4.18
2873 2911 6.479972 TTGGTTAATGATCTGTAGTCGGAT 57.520 37.500 0.00 0.00 41.79 4.18
2874 2912 6.479972 TGGTTAATGATCTGTAGTCGGATT 57.520 37.500 0.00 0.00 39.50 3.01
2875 2913 7.591421 TGGTTAATGATCTGTAGTCGGATTA 57.409 36.000 0.00 0.00 39.50 1.75
2876 2914 7.658261 TGGTTAATGATCTGTAGTCGGATTAG 58.342 38.462 0.00 0.00 39.50 1.73
2878 2916 7.595502 GGTTAATGATCTGTAGTCGGATTAGTG 59.404 40.741 0.00 0.00 39.50 2.74
2879 2917 4.569761 TGATCTGTAGTCGGATTAGTGC 57.430 45.455 0.00 0.00 39.50 4.40
2880 2918 4.207955 TGATCTGTAGTCGGATTAGTGCT 58.792 43.478 0.00 0.00 39.50 4.40
2881 2919 5.374071 TGATCTGTAGTCGGATTAGTGCTA 58.626 41.667 0.00 0.00 39.50 3.49
2911 2951 9.487790 TTTTCTGTTCAATTCTTTCTTGTTGTT 57.512 25.926 0.00 0.00 0.00 2.83
2912 2952 8.464770 TTCTGTTCAATTCTTTCTTGTTGTTG 57.535 30.769 0.00 0.00 0.00 3.33
2913 2953 7.601856 TCTGTTCAATTCTTTCTTGTTGTTGT 58.398 30.769 0.00 0.00 0.00 3.32
2914 2954 8.735315 TCTGTTCAATTCTTTCTTGTTGTTGTA 58.265 29.630 0.00 0.00 0.00 2.41
2920 2960 8.755018 CAATTCTTTCTTGTTGTTGTAATGTCC 58.245 33.333 0.00 0.00 0.00 4.02
2952 2993 8.635765 GATGTTATCCATCCCTGCTTAAATAA 57.364 34.615 0.00 0.00 43.59 1.40
2953 2994 9.077885 GATGTTATCCATCCCTGCTTAAATAAA 57.922 33.333 0.00 0.00 43.59 1.40
2954 2995 9.605951 ATGTTATCCATCCCTGCTTAAATAAAT 57.394 29.630 0.00 0.00 0.00 1.40
2988 3029 9.768662 AATTCTCACTTGTTCTAATTGCAATTT 57.231 25.926 28.45 13.50 0.00 1.82
3001 3042 8.896744 TCTAATTGCAATTTGATGGAAGTCTAG 58.103 33.333 28.45 15.00 34.01 2.43
3002 3043 4.970662 TGCAATTTGATGGAAGTCTAGC 57.029 40.909 0.00 0.00 0.00 3.42
3003 3044 4.592942 TGCAATTTGATGGAAGTCTAGCT 58.407 39.130 0.00 0.00 0.00 3.32
3004 3045 5.744171 TGCAATTTGATGGAAGTCTAGCTA 58.256 37.500 0.00 0.00 0.00 3.32
3005 3046 5.586243 TGCAATTTGATGGAAGTCTAGCTAC 59.414 40.000 0.00 0.00 0.00 3.58
3006 3047 5.819901 GCAATTTGATGGAAGTCTAGCTACT 59.180 40.000 0.00 0.00 0.00 2.57
3007 3048 6.986817 GCAATTTGATGGAAGTCTAGCTACTA 59.013 38.462 0.00 0.00 0.00 1.82
3018 3071 7.287235 GGAAGTCTAGCTACTATACCAAGGAAA 59.713 40.741 0.00 0.00 0.00 3.13
3036 3095 9.184523 CCAAGGAAAGAATACATACATACCAAA 57.815 33.333 0.00 0.00 0.00 3.28
3075 3162 6.099125 AGCATCAATTCCCAATGAATGAATGA 59.901 34.615 11.14 3.47 42.97 2.57
3078 3165 8.988934 CATCAATTCCCAATGAATGAATGATTC 58.011 33.333 0.00 0.00 42.97 2.52
3083 3170 7.073215 ATTCCCAATGAATGAATGATTCCCATT 59.927 33.333 2.26 7.11 42.18 3.16
3084 3171 5.995282 CCCAATGAATGAATGATTCCCATTG 59.005 40.000 23.20 23.20 45.00 2.82
3085 3172 6.408776 CCCAATGAATGAATGATTCCCATTGT 60.409 38.462 25.38 7.13 45.00 2.71
3086 3173 7.051623 CCAATGAATGAATGATTCCCATTGTT 58.948 34.615 25.38 10.09 45.00 2.83
3087 3174 7.225931 CCAATGAATGAATGATTCCCATTGTTC 59.774 37.037 25.38 13.56 45.00 3.18
3088 3175 7.670605 ATGAATGAATGATTCCCATTGTTCT 57.329 32.000 2.26 0.00 45.00 3.01
3089 3176 8.771521 ATGAATGAATGATTCCCATTGTTCTA 57.228 30.769 2.26 0.00 45.00 2.10
3090 3177 8.229253 TGAATGAATGATTCCCATTGTTCTAG 57.771 34.615 2.26 0.00 45.00 2.43
3091 3178 8.054572 TGAATGAATGATTCCCATTGTTCTAGA 58.945 33.333 2.26 0.00 45.00 2.43
3092 3179 8.461249 AATGAATGATTCCCATTGTTCTAGAG 57.539 34.615 2.26 0.00 45.00 2.43
3093 3180 7.199167 TGAATGATTCCCATTGTTCTAGAGA 57.801 36.000 2.26 0.00 45.00 3.10
3094 3181 7.809238 TGAATGATTCCCATTGTTCTAGAGAT 58.191 34.615 2.26 0.00 45.00 2.75
3095 3182 8.277197 TGAATGATTCCCATTGTTCTAGAGATT 58.723 33.333 2.26 0.00 45.00 2.40
3096 3183 9.129532 GAATGATTCCCATTGTTCTAGAGATTT 57.870 33.333 0.00 0.00 45.00 2.17
3097 3184 8.688747 ATGATTCCCATTGTTCTAGAGATTTC 57.311 34.615 0.00 0.00 29.34 2.17
3098 3185 7.632861 TGATTCCCATTGTTCTAGAGATTTCA 58.367 34.615 0.00 0.00 0.00 2.69
3099 3186 8.108999 TGATTCCCATTGTTCTAGAGATTTCAA 58.891 33.333 0.00 0.00 0.00 2.69
3100 3187 9.129532 GATTCCCATTGTTCTAGAGATTTCAAT 57.870 33.333 0.00 0.00 0.00 2.57
3101 3188 8.884124 TTCCCATTGTTCTAGAGATTTCAATT 57.116 30.769 0.00 0.00 0.00 2.32
3102 3189 9.973661 TTCCCATTGTTCTAGAGATTTCAATTA 57.026 29.630 0.00 0.00 0.00 1.40
3103 3190 9.396022 TCCCATTGTTCTAGAGATTTCAATTAC 57.604 33.333 0.00 0.00 0.00 1.89
3104 3191 9.401058 CCCATTGTTCTAGAGATTTCAATTACT 57.599 33.333 0.00 0.00 0.00 2.24
3106 3193 9.713740 CATTGTTCTAGAGATTTCAATTACTGC 57.286 33.333 0.00 0.00 0.00 4.40
3107 3194 7.849804 TGTTCTAGAGATTTCAATTACTGCC 57.150 36.000 0.00 0.00 0.00 4.85
3108 3195 7.394016 TGTTCTAGAGATTTCAATTACTGCCA 58.606 34.615 0.00 0.00 0.00 4.92
3109 3196 7.882791 TGTTCTAGAGATTTCAATTACTGCCAA 59.117 33.333 0.00 0.00 0.00 4.52
3110 3197 8.730680 GTTCTAGAGATTTCAATTACTGCCAAA 58.269 33.333 0.00 0.00 0.00 3.28
3111 3198 9.466497 TTCTAGAGATTTCAATTACTGCCAAAT 57.534 29.630 0.00 0.00 0.00 2.32
3145 3232 4.838665 AAAACACATGAAACGCTTGTTG 57.161 36.364 0.00 0.00 35.55 3.33
3146 3233 3.502191 AACACATGAAACGCTTGTTGT 57.498 38.095 0.00 0.00 35.55 3.32
3147 3234 3.502191 ACACATGAAACGCTTGTTGTT 57.498 38.095 0.00 0.00 35.55 2.83
3148 3235 3.178267 ACACATGAAACGCTTGTTGTTG 58.822 40.909 0.00 0.00 35.55 3.33
3149 3236 2.535166 CACATGAAACGCTTGTTGTTGG 59.465 45.455 0.00 0.00 35.55 3.77
3150 3237 2.126467 CATGAAACGCTTGTTGTTGGG 58.874 47.619 0.00 0.00 35.55 4.12
3151 3238 1.178276 TGAAACGCTTGTTGTTGGGT 58.822 45.000 0.00 0.00 35.55 4.51
3152 3239 1.546476 TGAAACGCTTGTTGTTGGGTT 59.454 42.857 0.00 0.00 40.27 4.11
3153 3240 2.190161 GAAACGCTTGTTGTTGGGTTC 58.810 47.619 0.00 0.00 38.16 3.62
3154 3241 0.458260 AACGCTTGTTGTTGGGTTCC 59.542 50.000 0.00 0.00 34.96 3.62
3155 3242 1.362355 CGCTTGTTGTTGGGTTCCC 59.638 57.895 0.12 0.12 0.00 3.97
3156 3243 1.745890 GCTTGTTGTTGGGTTCCCC 59.254 57.895 5.34 0.00 45.71 4.81
3245 3332 6.434018 ACAAATTTCATGTTTGTTGTTGGG 57.566 33.333 7.01 0.00 44.84 4.12
3246 3333 5.356470 ACAAATTTCATGTTTGTTGTTGGGG 59.644 36.000 7.01 0.00 44.84 4.96
3247 3334 5.365021 AATTTCATGTTTGTTGTTGGGGA 57.635 34.783 0.00 0.00 0.00 4.81
3272 3359 1.144936 GTGGCCGAGGAGATTGGAG 59.855 63.158 0.00 0.00 33.64 3.86
3321 3412 0.106519 GGGTGGAACTGGATGGATGG 60.107 60.000 0.00 0.00 36.74 3.51
3322 3413 0.918983 GGTGGAACTGGATGGATGGA 59.081 55.000 0.00 0.00 36.74 3.41
3422 3529 2.476821 ACACGTTTCTAAGTTGACCGG 58.523 47.619 0.00 0.00 0.00 5.28
3423 3530 1.796459 CACGTTTCTAAGTTGACCGGG 59.204 52.381 6.32 0.00 0.00 5.73
3424 3531 0.794473 CGTTTCTAAGTTGACCGGGC 59.206 55.000 6.32 1.57 0.00 6.13
3425 3532 1.162698 GTTTCTAAGTTGACCGGGCC 58.837 55.000 3.83 0.00 0.00 5.80
3489 3596 2.622962 GCCCTTCCCCAAACGAACG 61.623 63.158 0.00 0.00 0.00 3.95
3490 3597 1.969589 CCCTTCCCCAAACGAACGG 60.970 63.158 0.00 0.00 0.00 4.44
3491 3598 1.071814 CCTTCCCCAAACGAACGGA 59.928 57.895 0.00 0.00 0.00 4.69
3492 3599 1.232621 CCTTCCCCAAACGAACGGAC 61.233 60.000 0.00 0.00 0.00 4.79
3493 3600 1.562575 CTTCCCCAAACGAACGGACG 61.563 60.000 0.00 2.26 39.31 4.79
3494 3601 2.025767 TTCCCCAAACGAACGGACGA 62.026 55.000 10.16 0.00 37.03 4.20
3495 3602 2.312436 CCCCAAACGAACGGACGAC 61.312 63.158 10.16 0.00 37.03 4.34
3547 3664 1.275657 GCGTTCACGGTTCACACTG 59.724 57.895 0.81 0.00 40.23 3.66
3554 3671 1.889105 CGGTTCACACTGCTGCTGT 60.889 57.895 6.33 6.33 0.00 4.40
3566 3683 0.386838 GCTGCTGTTGCTGGACTTTT 59.613 50.000 0.00 0.00 40.48 2.27
3615 3733 3.371168 CAACAATTAAATCGGGGATGCG 58.629 45.455 0.00 0.00 0.00 4.73
3645 3763 7.566569 TGGGTCGTGGAATTTTATATTAGTGA 58.433 34.615 0.00 0.00 0.00 3.41
3705 3823 3.725356 CATGATGTAATGCGCGTGTATC 58.275 45.455 8.43 8.38 0.00 2.24
3713 3831 1.269810 GCGCGTGTATCGATGTGTG 59.730 57.895 8.54 2.89 42.86 3.82
3720 3838 3.479006 GTGTATCGATGTGTGTTTGTGC 58.521 45.455 8.54 0.00 0.00 4.57
3721 3839 3.186409 GTGTATCGATGTGTGTTTGTGCT 59.814 43.478 8.54 0.00 0.00 4.40
3725 3843 3.198872 TCGATGTGTGTTTGTGCTTGTA 58.801 40.909 0.00 0.00 0.00 2.41
3844 3978 1.352083 TCCAGAACAAGAGGACCCAG 58.648 55.000 0.00 0.00 0.00 4.45
3854 3988 3.491766 AGAGGACCCAGATGAAGGTAA 57.508 47.619 0.00 0.00 36.17 2.85
3856 3990 4.375313 AGAGGACCCAGATGAAGGTAATT 58.625 43.478 0.00 0.00 36.17 1.40
3857 3991 4.790790 AGAGGACCCAGATGAAGGTAATTT 59.209 41.667 0.00 0.00 36.17 1.82
3883 4017 7.504926 TTTCACCCCTGACTAATTACTACAT 57.495 36.000 0.00 0.00 0.00 2.29
3884 4018 6.726490 TCACCCCTGACTAATTACTACATC 57.274 41.667 0.00 0.00 0.00 3.06
3888 4022 5.839063 CCCCTGACTAATTACTACATCCTCA 59.161 44.000 0.00 0.00 0.00 3.86
3890 4024 7.310113 CCCCTGACTAATTACTACATCCTCATC 60.310 44.444 0.00 0.00 0.00 2.92
3892 4026 9.521841 CCTGACTAATTACTACATCCTCATCTA 57.478 37.037 0.00 0.00 0.00 1.98
3903 4037 9.159254 ACTACATCCTCATCTAATTAATCACCA 57.841 33.333 0.00 0.00 0.00 4.17
3906 4040 9.293404 ACATCCTCATCTAATTAATCACCATTG 57.707 33.333 0.00 0.00 0.00 2.82
3908 4042 8.044574 TCCTCATCTAATTAATCACCATTGGA 57.955 34.615 10.37 0.00 0.00 3.53
3909 4043 8.159447 TCCTCATCTAATTAATCACCATTGGAG 58.841 37.037 10.37 0.83 0.00 3.86
3910 4044 8.159447 CCTCATCTAATTAATCACCATTGGAGA 58.841 37.037 10.37 7.60 0.00 3.71
3911 4045 9.736414 CTCATCTAATTAATCACCATTGGAGAT 57.264 33.333 10.37 9.91 34.63 2.75
3912 4046 9.511272 TCATCTAATTAATCACCATTGGAGATG 57.489 33.333 15.26 14.84 33.53 2.90
3913 4047 9.511272 CATCTAATTAATCACCATTGGAGATGA 57.489 33.333 15.26 6.26 33.53 2.92
3915 4049 9.919416 TCTAATTAATCACCATTGGAGATGAAA 57.081 29.630 15.26 12.89 33.53 2.69
3917 4051 8.599624 AATTAATCACCATTGGAGATGAAAGT 57.400 30.769 15.26 9.91 33.53 2.66
3918 4052 5.909621 AATCACCATTGGAGATGAAAGTG 57.090 39.130 15.26 0.00 33.53 3.16
3919 4053 3.689347 TCACCATTGGAGATGAAAGTGG 58.311 45.455 10.37 0.00 0.00 4.00
3920 4054 3.074390 TCACCATTGGAGATGAAAGTGGT 59.926 43.478 10.37 0.00 38.93 4.16
3921 4055 3.192001 CACCATTGGAGATGAAAGTGGTG 59.808 47.826 10.37 7.17 46.06 4.17
3922 4056 3.181429 ACCATTGGAGATGAAAGTGGTGT 60.181 43.478 10.37 0.00 37.13 4.16
3923 4057 3.441572 CCATTGGAGATGAAAGTGGTGTC 59.558 47.826 0.00 0.00 0.00 3.67
3924 4058 4.330250 CATTGGAGATGAAAGTGGTGTCT 58.670 43.478 0.00 0.00 0.00 3.41
3925 4059 4.437682 TTGGAGATGAAAGTGGTGTCTT 57.562 40.909 0.00 0.00 0.00 3.01
3926 4060 3.743521 TGGAGATGAAAGTGGTGTCTTG 58.256 45.455 0.00 0.00 0.00 3.02
3927 4061 2.485814 GGAGATGAAAGTGGTGTCTTGC 59.514 50.000 0.00 0.00 0.00 4.01
3928 4062 3.141398 GAGATGAAAGTGGTGTCTTGCA 58.859 45.455 0.00 0.00 37.38 4.08
3929 4063 3.755378 GAGATGAAAGTGGTGTCTTGCAT 59.245 43.478 0.20 0.20 43.86 3.96
3930 4064 4.147321 AGATGAAAGTGGTGTCTTGCATT 58.853 39.130 2.09 0.00 41.98 3.56
3931 4065 4.586001 AGATGAAAGTGGTGTCTTGCATTT 59.414 37.500 2.09 0.00 41.98 2.32
3932 4066 4.305989 TGAAAGTGGTGTCTTGCATTTC 57.694 40.909 0.00 0.00 29.02 2.17
3935 4069 0.387239 GTGGTGTCTTGCATTTCGGC 60.387 55.000 0.00 0.00 0.00 5.54
3941 4075 0.597568 TCTTGCATTTCGGCTGTTGG 59.402 50.000 0.00 0.00 34.04 3.77
3998 4190 1.209504 TCATTTAAGCCTCTGACCGGG 59.790 52.381 6.32 0.00 0.00 5.73
4054 4246 3.397482 GCCTGTTGCTATATCTGGACAG 58.603 50.000 0.00 0.00 36.87 3.51
4070 4262 1.069765 CAGACTTCGCCCACACACT 59.930 57.895 0.00 0.00 0.00 3.55
4072 4264 1.668151 GACTTCGCCCACACACTCC 60.668 63.158 0.00 0.00 0.00 3.85
4076 4268 1.195442 TTCGCCCACACACTCCCATA 61.195 55.000 0.00 0.00 0.00 2.74
4077 4269 1.449601 CGCCCACACACTCCCATAC 60.450 63.158 0.00 0.00 0.00 2.39
4078 4270 1.682849 GCCCACACACTCCCATACA 59.317 57.895 0.00 0.00 0.00 2.29
4079 4271 0.676782 GCCCACACACTCCCATACAC 60.677 60.000 0.00 0.00 0.00 2.90
4080 4272 0.690192 CCCACACACTCCCATACACA 59.310 55.000 0.00 0.00 0.00 3.72
4081 4273 1.610624 CCCACACACTCCCATACACAC 60.611 57.143 0.00 0.00 0.00 3.82
4115 4307 1.002990 CAGTCAGGTCATGCAGGCA 60.003 57.895 0.00 0.00 0.00 4.75
4116 4308 1.025113 CAGTCAGGTCATGCAGGCAG 61.025 60.000 0.00 0.00 0.00 4.85
4117 4309 1.748122 GTCAGGTCATGCAGGCAGG 60.748 63.158 0.00 0.00 0.00 4.85
4118 4310 3.138798 CAGGTCATGCAGGCAGGC 61.139 66.667 0.29 0.00 0.00 4.85
4181 4373 2.447429 TCCCATAGTCAAACCCCACAAA 59.553 45.455 0.00 0.00 0.00 2.83
4273 4505 2.359230 GCACTGTCAGCTCACCCC 60.359 66.667 0.00 0.00 0.00 4.95
4298 4558 3.827625 TGTAAATGCAACGTGTTATGGC 58.172 40.909 0.00 0.00 0.00 4.40
4319 4579 1.742831 TGTTAATCTGATGGCGTTGGC 59.257 47.619 0.00 0.00 38.90 4.52
4345 4605 1.142262 TGACTGCTGATCATGGATGGG 59.858 52.381 0.00 0.00 0.00 4.00
4346 4606 1.142465 GACTGCTGATCATGGATGGGT 59.858 52.381 0.00 0.00 0.00 4.51
4728 4988 4.385405 GTCGAGCTGGCTGTGGCT 62.385 66.667 0.00 0.00 41.88 4.75
4842 5102 1.290203 CAAGGATGTTCATCGACCCG 58.710 55.000 6.70 0.00 0.00 5.28
4881 5141 1.068250 GCAGTATGGCCTCGTCTCC 59.932 63.158 3.32 0.00 35.86 3.71
4962 5224 3.373130 TCATGGACGTCGTAAGTACTCAG 59.627 47.826 9.92 0.00 39.48 3.35
5680 5951 2.031163 GTGGCGAGCTTCTGTGGT 59.969 61.111 0.00 0.00 0.00 4.16
5689 5960 1.227527 CTTCTGTGGTGGCGTGACA 60.228 57.895 0.00 0.00 0.00 3.58
5716 5987 4.626081 GCGCACCAGTGGACCACT 62.626 66.667 21.99 21.99 46.51 4.00
5725 5996 2.603473 TGGACCACTCTGTCGGGG 60.603 66.667 0.00 0.00 36.07 5.73
5827 6098 1.614824 CACCTCCTTCTGGCTCCCT 60.615 63.158 0.00 0.00 0.00 4.20
5863 6134 1.030488 TCTTCGACTTCCTCCGCGAT 61.030 55.000 8.23 0.00 32.38 4.58
5920 6191 8.139350 TCTATCATGAAAATGATCATTGCCAAC 58.861 33.333 21.39 11.34 41.20 3.77
5924 6195 5.481105 TGAAAATGATCATTGCCAACTTCC 58.519 37.500 21.39 6.33 0.00 3.46
5926 6197 5.750352 AAATGATCATTGCCAACTTCCTT 57.250 34.783 21.39 0.00 0.00 3.36
5927 6198 4.730949 ATGATCATTGCCAACTTCCTTG 57.269 40.909 1.18 0.00 0.00 3.61
5932 6203 5.549742 TCATTGCCAACTTCCTTGAAATT 57.450 34.783 0.00 0.00 30.42 1.82
5936 6207 6.916360 TTGCCAACTTCCTTGAAATTCTAT 57.084 33.333 0.00 0.00 30.42 1.98
5959 6237 9.281371 CTATGGTTGATGATGAACACTCATATT 57.719 33.333 0.00 0.00 42.60 1.28
6029 6307 1.451927 GGCTCACATCGCCAATGGA 60.452 57.895 2.05 0.00 46.77 3.41
6079 6357 5.046878 TCCTCCGTGTCAATGTAAGTACAAT 60.047 40.000 0.00 0.00 39.99 2.71
6106 6387 7.724506 AGAATCTGATCATGCAATAACCTCATT 59.275 33.333 0.00 0.00 0.00 2.57
6112 6393 5.423886 TCATGCAATAACCTCATTCGTGTA 58.576 37.500 0.00 0.00 0.00 2.90
6118 6399 8.556194 TGCAATAACCTCATTCGTGTAATAATC 58.444 33.333 0.00 0.00 0.00 1.75
6138 6427 4.647424 TCGAATTAACCATGGATTTGGC 57.353 40.909 21.47 2.50 40.68 4.52
6269 6558 1.167851 CCATGAACGTGGTGCTCAAT 58.832 50.000 0.00 0.00 34.46 2.57
6279 6568 4.695993 TGCTCAATGGCGGCGACA 62.696 61.111 21.84 21.84 34.52 4.35
6293 6582 1.205820 CGACACAGACTACGTCGCA 59.794 57.895 11.54 0.00 44.99 5.10
6583 6872 7.355101 TCCTATGTTCTGTATCAGAGGTAAGT 58.645 38.462 5.88 0.00 41.75 2.24
6598 6887 8.159344 CAGAGGTAAGTCTGAAATCAAAACTT 57.841 34.615 12.66 12.66 46.02 2.66
6602 6891 8.129211 AGGTAAGTCTGAAATCAAAACTTTTCG 58.871 33.333 13.08 0.00 32.71 3.46
6604 6893 9.925268 GTAAGTCTGAAATCAAAACTTTTCGTA 57.075 29.630 13.08 0.00 32.71 3.43
6646 6936 8.743714 GGGTTTTATCTGAATTCTCTGAAACAT 58.256 33.333 7.05 0.00 33.72 2.71
6653 6943 6.919662 TCTGAATTCTCTGAAACATTTTGCAC 59.080 34.615 7.05 0.00 0.00 4.57
6762 7052 0.036164 CCACAGATTGTTCCCCGTGA 59.964 55.000 0.00 0.00 0.00 4.35
6788 7078 2.346365 GGGGAAACTCCGCGACTT 59.654 61.111 8.23 0.00 39.75 3.01
6799 7089 0.856641 CCGCGACTTTCTTCGTTTCA 59.143 50.000 8.23 0.00 41.26 2.69
6912 7203 0.543749 ATGCTGCTACCTCTGGGTTC 59.456 55.000 0.00 0.00 44.73 3.62
6979 7270 6.641314 TCTTCAGTCAGTCTTGTAATTCGTTC 59.359 38.462 0.00 0.00 0.00 3.95
7061 7352 2.019984 GAGATTTGTGCCCATCTGTCC 58.980 52.381 0.00 0.00 29.41 4.02
7067 7358 1.913262 TGCCCATCTGTCCGTCTGT 60.913 57.895 0.00 0.00 0.00 3.41
7162 7731 3.384146 TGTGATCAATGTGGCTTGTGTTT 59.616 39.130 0.00 0.00 0.00 2.83
7163 7732 3.983344 GTGATCAATGTGGCTTGTGTTTC 59.017 43.478 0.00 0.00 0.00 2.78
7164 7733 3.890756 TGATCAATGTGGCTTGTGTTTCT 59.109 39.130 0.00 0.00 0.00 2.52
7165 7734 4.341806 TGATCAATGTGGCTTGTGTTTCTT 59.658 37.500 0.00 0.00 0.00 2.52
7166 7735 4.305989 TCAATGTGGCTTGTGTTTCTTC 57.694 40.909 0.00 0.00 0.00 2.87
7167 7736 3.068024 TCAATGTGGCTTGTGTTTCTTCC 59.932 43.478 0.00 0.00 0.00 3.46
7182 7751 2.329267 TCTTCCCTGCTTCAGTGAAGA 58.671 47.619 32.39 17.79 46.73 2.87
7198 7767 6.706270 TCAGTGAAGACAAATGTTAGTTCCTC 59.294 38.462 0.00 0.00 0.00 3.71
7206 7775 1.919240 TGTTAGTTCCTCGAGGCTCA 58.081 50.000 27.39 14.63 34.44 4.26
7212 7781 1.595993 TTCCTCGAGGCTCAAGGACG 61.596 60.000 23.66 4.03 38.90 4.79
7216 7785 1.446272 CGAGGCTCAAGGACGGAAC 60.446 63.158 15.95 0.00 0.00 3.62
7239 7808 2.859165 TTCCTTCCAAATCTCTGCGT 57.141 45.000 0.00 0.00 0.00 5.24
7240 7809 3.973206 TTCCTTCCAAATCTCTGCGTA 57.027 42.857 0.00 0.00 0.00 4.42
7259 7828 7.985184 TCTGCGTACCAATAAGAATTGTAGAAT 59.015 33.333 0.00 0.00 40.84 2.40
7261 7830 8.609176 TGCGTACCAATAAGAATTGTAGAATTC 58.391 33.333 15.68 15.68 45.50 2.17
7288 7857 5.567138 AAGGCTTGGATACTCATTTTTCG 57.433 39.130 0.00 0.00 37.61 3.46
7426 7999 8.458052 TGACAAATCATTCCATGTATACAACAC 58.542 33.333 10.14 0.00 42.09 3.32
7444 8017 4.258702 ACACTGAGCGTTTCTGAATACT 57.741 40.909 0.00 0.00 0.00 2.12
7448 8021 5.460419 CACTGAGCGTTTCTGAATACTATCC 59.540 44.000 0.00 0.00 0.00 2.59
7458 8031 2.775384 TGAATACTATCCACACCCCCAC 59.225 50.000 0.00 0.00 0.00 4.61
7493 8066 0.758734 TCAATACCAGCCAGATCCCG 59.241 55.000 0.00 0.00 0.00 5.14
7525 8098 6.183361 ACAACAGTTTAGGAACTCATCAGACT 60.183 38.462 0.00 0.00 44.14 3.24
7529 8102 7.015292 ACAGTTTAGGAACTCATCAGACTAACA 59.985 37.037 0.00 0.00 44.14 2.41
7531 8104 7.451877 AGTTTAGGAACTCATCAGACTAACAGA 59.548 37.037 0.00 0.00 42.35 3.41
7535 8108 5.398603 AACTCATCAGACTAACAGACCAG 57.601 43.478 0.00 0.00 0.00 4.00
7536 8109 4.411927 ACTCATCAGACTAACAGACCAGT 58.588 43.478 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.959639 ACATTTTGTGATGACTTTGTACCT 57.040 33.333 0.00 0.00 0.00 3.08
94 95 9.685828 AGCAAAATGTTTAATTGTGTTATACGT 57.314 25.926 0.00 0.00 0.00 3.57
100 101 8.288913 GCCATAAGCAAAATGTTTAATTGTGTT 58.711 29.630 0.00 0.00 42.97 3.32
101 102 7.805700 GCCATAAGCAAAATGTTTAATTGTGT 58.194 30.769 0.00 0.00 42.97 3.72
187 189 7.813852 ATTTAAACTCTCGGCGATATATGAC 57.186 36.000 11.27 0.00 0.00 3.06
206 208 4.717991 GCAATCAGTGCGTGTGTATTTAA 58.282 39.130 0.00 0.00 45.10 1.52
207 210 4.335082 GCAATCAGTGCGTGTGTATTTA 57.665 40.909 0.00 0.00 45.10 1.40
220 223 4.160642 TCCTCTATTGCATGCAATCAGT 57.839 40.909 41.17 25.65 44.50 3.41
382 399 2.775384 GGGTAGAGTCAGAGAGGAGAGA 59.225 54.545 0.00 0.00 0.00 3.10
383 400 2.158667 GGGGTAGAGTCAGAGAGGAGAG 60.159 59.091 0.00 0.00 0.00 3.20
581 599 0.107312 TAGAGGAAGGGGACGACGAG 60.107 60.000 0.00 0.00 0.00 4.18
685 703 3.237741 CAGCTCCGATCCCTCCCC 61.238 72.222 0.00 0.00 0.00 4.81
700 718 8.742554 TCGTATGTGTCTATATATGTTTGCAG 57.257 34.615 0.00 0.00 0.00 4.41
776 794 0.385029 CGAGCAGCAGCAGATCTAGT 59.615 55.000 3.17 0.00 45.49 2.57
805 823 5.823045 GGGGTATATATATCTTGCTTGCCAC 59.177 44.000 0.00 0.00 0.00 5.01
878 896 3.051803 TCTCTCTCTCTCTCTCTCTCCCT 60.052 52.174 0.00 0.00 0.00 4.20
879 897 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
880 898 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
881 899 5.782047 CATCTCTCTCTCTCTCTCTCTCTC 58.218 50.000 0.00 0.00 0.00 3.20
882 900 4.040217 GCATCTCTCTCTCTCTCTCTCTCT 59.960 50.000 0.00 0.00 0.00 3.10
883 901 4.202295 TGCATCTCTCTCTCTCTCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
884 902 3.713248 TGCATCTCTCTCTCTCTCTCTCT 59.287 47.826 0.00 0.00 0.00 3.10
920 938 0.610785 TTCCCGCACCTTCCATTTCC 60.611 55.000 0.00 0.00 0.00 3.13
1089 1107 2.439409 ACAAAACGTAATACCTGGCCC 58.561 47.619 0.00 0.00 0.00 5.80
1100 1118 9.362539 GAACTTTCTGGAGATATACAAAACGTA 57.637 33.333 0.00 0.00 0.00 3.57
1101 1119 7.876068 TGAACTTTCTGGAGATATACAAAACGT 59.124 33.333 0.00 0.00 0.00 3.99
1102 1120 8.251750 TGAACTTTCTGGAGATATACAAAACG 57.748 34.615 0.00 0.00 0.00 3.60
1126 1144 7.080099 TCAAGATTTCTTTCAGCTCGAAATTG 58.920 34.615 10.45 10.59 42.69 2.32
1242 1261 3.425193 CACGCAGAAATTAAAGGCAACAC 59.575 43.478 0.00 0.00 41.41 3.32
1384 1403 1.714541 TGCAAATCAAAGCAAGGGGA 58.285 45.000 0.00 0.00 37.90 4.81
1385 1404 2.773993 ATGCAAATCAAAGCAAGGGG 57.226 45.000 0.00 0.00 44.88 4.79
1438 1457 7.373617 TCCTATATGCAAATCAAGGAGTACA 57.626 36.000 0.00 0.00 28.60 2.90
1467 1486 7.906160 AGTACAAATTATTTTGAGACGGATCG 58.094 34.615 15.19 0.00 44.11 3.69
1634 1654 9.915629 CTTCTTTATCTGCTCCGTTTATATAGT 57.084 33.333 0.00 0.00 0.00 2.12
1744 1764 4.825679 CACTCCCCTCCCCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
1745 1765 4.825679 CCACTCCCCTCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
1834 1854 4.882427 GGAAGAATAGAAGGTAGGTTTGGC 59.118 45.833 0.00 0.00 0.00 4.52
1907 1927 8.455903 TTGATTATTGATGTCTCATTTCCTCC 57.544 34.615 0.00 0.00 0.00 4.30
1911 1931 8.455903 TCCCTTGATTATTGATGTCTCATTTC 57.544 34.615 0.00 0.00 0.00 2.17
1924 1944 9.933723 CAACTTTTGATTTCTCCCTTGATTATT 57.066 29.630 0.00 0.00 0.00 1.40
1925 1945 8.037166 GCAACTTTTGATTTCTCCCTTGATTAT 58.963 33.333 0.00 0.00 0.00 1.28
1926 1946 7.233348 AGCAACTTTTGATTTCTCCCTTGATTA 59.767 33.333 0.00 0.00 0.00 1.75
1941 1961 5.066505 GGAGAAGAAGTGAAGCAACTTTTGA 59.933 40.000 1.61 0.00 40.48 2.69
1942 1962 5.277047 GGAGAAGAAGTGAAGCAACTTTTG 58.723 41.667 1.61 0.00 40.48 2.44
1968 1988 7.736447 AAATTAAGCTAGAAATCAGGGATCG 57.264 36.000 0.00 0.00 0.00 3.69
1987 2007 8.190784 GCAGAATGGAAAAGCTAGCTAAAATTA 58.809 33.333 19.70 3.81 35.86 1.40
1988 2008 7.038048 GCAGAATGGAAAAGCTAGCTAAAATT 58.962 34.615 19.70 13.28 35.86 1.82
1989 2009 6.406288 GGCAGAATGGAAAAGCTAGCTAAAAT 60.406 38.462 19.70 4.33 35.86 1.82
2049 2069 2.274542 TGCTAATCTGTTTGGGGAGGA 58.725 47.619 0.00 0.00 0.00 3.71
2116 2136 1.501654 AAGGGGAGAGGTTTCAGGGC 61.502 60.000 0.00 0.00 0.00 5.19
2173 2193 1.429463 GCAGTACACCGCATATAGGC 58.571 55.000 0.00 0.00 0.00 3.93
2179 2199 1.014044 CAAGTCGCAGTACACCGCAT 61.014 55.000 0.00 0.00 0.00 4.73
2267 2287 7.895759 TGCAATTTATAGAGGAAGCAAAGTTT 58.104 30.769 0.00 0.00 0.00 2.66
2629 2657 5.887035 GGACTAGAAGAGTATACACAGTGGT 59.113 44.000 5.31 0.00 39.06 4.16
2642 2673 8.842280 AGACTAATCAATTACGGACTAGAAGAG 58.158 37.037 0.00 0.00 0.00 2.85
2644 2675 8.622157 TGAGACTAATCAATTACGGACTAGAAG 58.378 37.037 0.00 0.00 0.00 2.85
2645 2676 8.404000 GTGAGACTAATCAATTACGGACTAGAA 58.596 37.037 0.00 0.00 0.00 2.10
2646 2677 7.774157 AGTGAGACTAATCAATTACGGACTAGA 59.226 37.037 0.00 0.00 0.00 2.43
2647 2678 7.932335 AGTGAGACTAATCAATTACGGACTAG 58.068 38.462 0.00 0.00 0.00 2.57
2648 2679 7.555195 TGAGTGAGACTAATCAATTACGGACTA 59.445 37.037 0.00 0.00 0.00 2.59
2649 2680 6.377429 TGAGTGAGACTAATCAATTACGGACT 59.623 38.462 0.00 0.00 0.00 3.85
2650 2681 6.472808 GTGAGTGAGACTAATCAATTACGGAC 59.527 42.308 0.00 0.00 26.80 4.79
2651 2682 6.152154 TGTGAGTGAGACTAATCAATTACGGA 59.848 38.462 0.00 0.00 36.80 4.69
2652 2683 6.330278 TGTGAGTGAGACTAATCAATTACGG 58.670 40.000 0.00 0.00 36.80 4.02
2653 2684 7.702348 TGATGTGAGTGAGACTAATCAATTACG 59.298 37.037 0.00 0.00 36.80 3.18
2656 2687 7.065563 GCTTGATGTGAGTGAGACTAATCAATT 59.934 37.037 0.00 0.00 34.73 2.32
2657 2688 6.538021 GCTTGATGTGAGTGAGACTAATCAAT 59.462 38.462 0.00 0.00 34.73 2.57
2671 2702 3.377172 TGAATGAGCATGCTTGATGTGAG 59.623 43.478 23.61 0.00 34.14 3.51
2672 2703 3.349022 TGAATGAGCATGCTTGATGTGA 58.651 40.909 23.61 0.03 34.14 3.58
2673 2704 3.775661 TGAATGAGCATGCTTGATGTG 57.224 42.857 23.61 0.00 34.14 3.21
2674 2705 6.004574 AGATATGAATGAGCATGCTTGATGT 58.995 36.000 23.61 3.81 34.14 3.06
2675 2706 6.317857 CAGATATGAATGAGCATGCTTGATG 58.682 40.000 23.61 5.71 34.84 3.07
2677 2708 4.760204 CCAGATATGAATGAGCATGCTTGA 59.240 41.667 23.61 12.36 0.00 3.02
2678 2709 4.519350 ACCAGATATGAATGAGCATGCTTG 59.481 41.667 23.61 11.55 0.00 4.01
2679 2710 4.726583 ACCAGATATGAATGAGCATGCTT 58.273 39.130 23.61 5.73 0.00 3.91
2680 2711 4.368565 ACCAGATATGAATGAGCATGCT 57.631 40.909 22.92 22.92 0.00 3.79
2681 2712 4.394300 GGTACCAGATATGAATGAGCATGC 59.606 45.833 10.51 10.51 0.00 4.06
2682 2713 5.410746 GTGGTACCAGATATGAATGAGCATG 59.589 44.000 16.93 0.00 0.00 4.06
2683 2714 5.309020 AGTGGTACCAGATATGAATGAGCAT 59.691 40.000 16.93 0.00 0.00 3.79
2699 2730 4.198028 ACACGAATTAAGGAGTGGTACC 57.802 45.455 4.43 4.43 38.78 3.34
2702 2733 4.345859 TGAACACGAATTAAGGAGTGGT 57.654 40.909 10.40 5.00 38.78 4.16
2704 2735 6.149474 AGGAATTGAACACGAATTAAGGAGTG 59.851 38.462 0.00 5.71 40.17 3.51
2716 2747 7.133891 AGATAACAAGAAGGAATTGAACACG 57.866 36.000 0.00 0.00 0.00 4.49
2720 2751 8.940397 AGGAAAGATAACAAGAAGGAATTGAA 57.060 30.769 0.00 0.00 0.00 2.69
2751 2782 4.150627 TCTCGATTCAAGAACAAAGCGAAG 59.849 41.667 0.00 0.00 41.96 3.79
2770 2801 3.384668 ACGTATGCTTCCATGAATCTCG 58.615 45.455 0.00 0.00 32.85 4.04
2775 2806 7.170828 GTGTATATCAACGTATGCTTCCATGAA 59.829 37.037 0.00 0.00 32.85 2.57
2776 2807 6.645003 GTGTATATCAACGTATGCTTCCATGA 59.355 38.462 0.00 0.00 32.85 3.07
2777 2808 6.646653 AGTGTATATCAACGTATGCTTCCATG 59.353 38.462 0.00 0.00 32.85 3.66
2779 2810 6.156748 AGTGTATATCAACGTATGCTTCCA 57.843 37.500 0.00 0.00 0.00 3.53
2781 2812 5.634020 GGGAGTGTATATCAACGTATGCTTC 59.366 44.000 0.00 0.00 0.00 3.86
2783 2814 4.021368 GGGGAGTGTATATCAACGTATGCT 60.021 45.833 0.00 0.00 0.00 3.79
2784 2815 4.243270 GGGGAGTGTATATCAACGTATGC 58.757 47.826 0.00 0.00 0.00 3.14
2785 2816 5.462530 TGGGGAGTGTATATCAACGTATG 57.537 43.478 0.00 0.00 0.00 2.39
2804 2839 7.528996 TTAATGAGCATGATTAAGGATTGGG 57.471 36.000 0.00 0.00 29.20 4.12
2839 2877 9.520515 ACAGATCATTAACCAAAAGTACAAGAT 57.479 29.630 0.00 0.00 0.00 2.40
2840 2878 8.918202 ACAGATCATTAACCAAAAGTACAAGA 57.082 30.769 0.00 0.00 0.00 3.02
2842 2880 9.787435 ACTACAGATCATTAACCAAAAGTACAA 57.213 29.630 0.00 0.00 0.00 2.41
2843 2881 9.431887 GACTACAGATCATTAACCAAAAGTACA 57.568 33.333 0.00 0.00 0.00 2.90
2847 2885 6.816640 TCCGACTACAGATCATTAACCAAAAG 59.183 38.462 0.00 0.00 0.00 2.27
2870 2908 8.718102 TGAACAGAAAAGTATAGCACTAATCC 57.282 34.615 0.00 0.00 36.04 3.01
2874 2912 9.944376 AGAATTGAACAGAAAAGTATAGCACTA 57.056 29.630 0.00 0.00 36.04 2.74
2875 2913 8.854614 AGAATTGAACAGAAAAGTATAGCACT 57.145 30.769 0.00 0.00 40.05 4.40
2876 2914 9.899226 AAAGAATTGAACAGAAAAGTATAGCAC 57.101 29.630 0.00 0.00 0.00 4.40
2976 3017 7.646922 GCTAGACTTCCATCAAATTGCAATTAG 59.353 37.037 24.35 17.49 0.00 1.73
2988 3029 6.849151 TGGTATAGTAGCTAGACTTCCATCA 58.151 40.000 0.00 0.00 30.06 3.07
3009 3050 7.867921 TGGTATGTATGTATTCTTTCCTTGGT 58.132 34.615 0.00 0.00 0.00 3.67
3075 3162 9.484806 AATTGAAATCTCTAGAACAATGGGAAT 57.515 29.630 0.00 0.00 31.93 3.01
3078 3165 9.401058 AGTAATTGAAATCTCTAGAACAATGGG 57.599 33.333 0.00 0.00 31.93 4.00
3083 3170 7.394016 TGGCAGTAATTGAAATCTCTAGAACA 58.606 34.615 0.00 0.00 0.00 3.18
3084 3171 7.849804 TGGCAGTAATTGAAATCTCTAGAAC 57.150 36.000 0.00 0.00 0.00 3.01
3085 3172 8.862325 TTTGGCAGTAATTGAAATCTCTAGAA 57.138 30.769 0.00 0.00 0.00 2.10
3123 3210 4.688413 ACAACAAGCGTTTCATGTGTTTTT 59.312 33.333 0.00 0.00 31.13 1.94
3124 3211 4.241681 ACAACAAGCGTTTCATGTGTTTT 58.758 34.783 0.00 0.00 31.13 2.43
3125 3212 3.843999 ACAACAAGCGTTTCATGTGTTT 58.156 36.364 0.00 0.00 31.13 2.83
3126 3213 3.502191 ACAACAAGCGTTTCATGTGTT 57.498 38.095 0.00 0.00 31.13 3.32
3127 3214 3.178267 CAACAACAAGCGTTTCATGTGT 58.822 40.909 0.00 0.00 31.13 3.72
3128 3215 2.535166 CCAACAACAAGCGTTTCATGTG 59.465 45.455 0.00 0.00 31.13 3.21
3129 3216 2.481104 CCCAACAACAAGCGTTTCATGT 60.481 45.455 0.00 0.00 31.13 3.21
3130 3217 2.126467 CCCAACAACAAGCGTTTCATG 58.874 47.619 0.00 0.00 31.13 3.07
3131 3218 1.754226 ACCCAACAACAAGCGTTTCAT 59.246 42.857 0.00 0.00 31.13 2.57
3132 3219 1.178276 ACCCAACAACAAGCGTTTCA 58.822 45.000 0.00 0.00 31.13 2.69
3133 3220 2.190161 GAACCCAACAACAAGCGTTTC 58.810 47.619 0.00 0.00 31.13 2.78
3134 3221 1.134936 GGAACCCAACAACAAGCGTTT 60.135 47.619 0.00 0.00 31.13 3.60
3135 3222 0.458260 GGAACCCAACAACAAGCGTT 59.542 50.000 0.00 0.00 35.01 4.84
3136 3223 2.112029 GGAACCCAACAACAAGCGT 58.888 52.632 0.00 0.00 0.00 5.07
3160 3247 6.308371 TCTTTAGAACAACGGAAAACATCC 57.692 37.500 0.00 0.00 45.57 3.51
3161 3248 8.797266 AAATCTTTAGAACAACGGAAAACATC 57.203 30.769 0.00 0.00 0.00 3.06
3162 3249 8.410141 TGAAATCTTTAGAACAACGGAAAACAT 58.590 29.630 0.00 0.00 0.00 2.71
3163 3250 7.763356 TGAAATCTTTAGAACAACGGAAAACA 58.237 30.769 0.00 0.00 0.00 2.83
3164 3251 8.623310 TTGAAATCTTTAGAACAACGGAAAAC 57.377 30.769 0.00 0.00 0.00 2.43
3171 3258 9.129209 GGCAGTAATTGAAATCTTTAGAACAAC 57.871 33.333 0.00 0.00 0.00 3.32
3225 3312 5.365021 TCCCCAACAACAAACATGAAATT 57.635 34.783 0.00 0.00 0.00 1.82
3272 3359 1.893801 TGTTCTCTTCTCGTCTTCCCC 59.106 52.381 0.00 0.00 0.00 4.81
3321 3412 0.498927 GCGCGTCTCGTATGAACATC 59.501 55.000 8.43 0.00 41.07 3.06
3322 3413 0.179148 TGCGCGTCTCGTATGAACAT 60.179 50.000 8.43 0.00 41.07 2.71
3493 3600 4.778143 AATGCTGCGTCCCCCGTC 62.778 66.667 0.00 0.00 39.32 4.79
3494 3601 4.778143 GAATGCTGCGTCCCCCGT 62.778 66.667 0.00 0.00 39.32 5.28
3495 3602 4.776322 TGAATGCTGCGTCCCCCG 62.776 66.667 0.00 0.00 40.40 5.73
3496 3603 1.728490 GAATGAATGCTGCGTCCCCC 61.728 60.000 0.00 0.00 0.00 5.40
3497 3604 1.031571 TGAATGAATGCTGCGTCCCC 61.032 55.000 0.00 0.00 0.00 4.81
3498 3605 0.810648 TTGAATGAATGCTGCGTCCC 59.189 50.000 0.00 0.00 0.00 4.46
3537 3654 0.029834 CAACAGCAGCAGTGTGAACC 59.970 55.000 0.00 0.00 0.00 3.62
3547 3664 0.386838 AAAAGTCCAGCAACAGCAGC 59.613 50.000 0.00 0.00 0.00 5.25
3566 3683 6.287525 CCAAAAAGCCAGAGGAAATAACAAA 58.712 36.000 0.00 0.00 0.00 2.83
3592 3710 3.371168 CATCCCCGATTTAATTGTTGCG 58.629 45.455 0.00 0.00 0.00 4.85
3615 3733 0.887933 AAATTCCACGACCCATGCAC 59.112 50.000 0.00 0.00 0.00 4.57
3623 3741 9.864034 CATGTCACTAATATAAAATTCCACGAC 57.136 33.333 0.00 0.00 0.00 4.34
3696 3814 0.989164 AACACACATCGATACACGCG 59.011 50.000 3.53 3.53 42.26 6.01
3698 3816 3.721048 CACAAACACACATCGATACACG 58.279 45.455 0.00 0.00 44.09 4.49
3699 3817 3.186409 AGCACAAACACACATCGATACAC 59.814 43.478 0.00 0.00 0.00 2.90
3705 3823 2.473530 ACAAGCACAAACACACATCG 57.526 45.000 0.00 0.00 0.00 3.84
3713 3831 4.701956 ACCTGCATATACAAGCACAAAC 57.298 40.909 0.00 0.00 36.62 2.93
3720 3838 6.115446 TCCTTGAAGAACCTGCATATACAAG 58.885 40.000 0.00 0.00 34.15 3.16
3721 3839 6.061022 TCCTTGAAGAACCTGCATATACAA 57.939 37.500 0.00 0.00 0.00 2.41
3725 3843 4.521146 CACTCCTTGAAGAACCTGCATAT 58.479 43.478 0.00 0.00 0.00 1.78
3857 3991 7.747690 TGTAGTAATTAGTCAGGGGTGAAAAA 58.252 34.615 0.00 0.00 0.00 1.94
3860 3994 6.099269 GGATGTAGTAATTAGTCAGGGGTGAA 59.901 42.308 0.00 0.00 0.00 3.18
3861 3995 5.601313 GGATGTAGTAATTAGTCAGGGGTGA 59.399 44.000 0.00 0.00 0.00 4.02
3862 3996 5.602978 AGGATGTAGTAATTAGTCAGGGGTG 59.397 44.000 0.00 0.00 0.00 4.61
3863 3997 5.789535 AGGATGTAGTAATTAGTCAGGGGT 58.210 41.667 0.00 0.00 0.00 4.95
3864 3998 5.839063 TGAGGATGTAGTAATTAGTCAGGGG 59.161 44.000 0.00 0.00 0.00 4.79
3865 3999 6.978674 TGAGGATGTAGTAATTAGTCAGGG 57.021 41.667 0.00 0.00 0.00 4.45
3866 4000 8.415950 AGATGAGGATGTAGTAATTAGTCAGG 57.584 38.462 0.00 0.00 0.00 3.86
3877 4011 9.159254 TGGTGATTAATTAGATGAGGATGTAGT 57.841 33.333 0.00 0.00 0.00 2.73
3880 4014 9.293404 CAATGGTGATTAATTAGATGAGGATGT 57.707 33.333 0.00 0.00 0.00 3.06
3881 4015 8.737175 CCAATGGTGATTAATTAGATGAGGATG 58.263 37.037 0.00 0.00 0.00 3.51
3883 4017 8.044574 TCCAATGGTGATTAATTAGATGAGGA 57.955 34.615 0.00 0.00 0.00 3.71
3884 4018 8.159447 TCTCCAATGGTGATTAATTAGATGAGG 58.841 37.037 0.00 0.00 0.00 3.86
3892 4026 8.472413 CACTTTCATCTCCAATGGTGATTAATT 58.528 33.333 13.60 4.23 34.23 1.40
3895 4029 5.887598 CCACTTTCATCTCCAATGGTGATTA 59.112 40.000 13.60 4.26 34.23 1.75
3896 4030 4.708421 CCACTTTCATCTCCAATGGTGATT 59.292 41.667 13.60 0.00 34.23 2.57
3897 4031 4.264083 ACCACTTTCATCTCCAATGGTGAT 60.264 41.667 10.76 10.76 37.58 3.06
3898 4032 3.074390 ACCACTTTCATCTCCAATGGTGA 59.926 43.478 6.50 6.50 37.58 4.02
3899 4033 3.192001 CACCACTTTCATCTCCAATGGTG 59.808 47.826 6.14 6.14 46.86 4.17
3900 4034 3.181429 ACACCACTTTCATCTCCAATGGT 60.181 43.478 0.00 0.00 39.55 3.55
3902 4036 4.330250 AGACACCACTTTCATCTCCAATG 58.670 43.478 0.00 0.00 0.00 2.82
3903 4037 4.647564 AGACACCACTTTCATCTCCAAT 57.352 40.909 0.00 0.00 0.00 3.16
3906 4040 2.485814 GCAAGACACCACTTTCATCTCC 59.514 50.000 0.00 0.00 0.00 3.71
3908 4042 3.213206 TGCAAGACACCACTTTCATCT 57.787 42.857 0.00 0.00 0.00 2.90
3909 4043 4.510038 AATGCAAGACACCACTTTCATC 57.490 40.909 0.00 0.00 34.00 2.92
3910 4044 4.557296 CGAAATGCAAGACACCACTTTCAT 60.557 41.667 0.00 0.00 35.88 2.57
3911 4045 3.243035 CGAAATGCAAGACACCACTTTCA 60.243 43.478 0.00 0.00 0.00 2.69
3912 4046 3.300009 CGAAATGCAAGACACCACTTTC 58.700 45.455 0.00 0.00 0.00 2.62
3913 4047 2.034558 CCGAAATGCAAGACACCACTTT 59.965 45.455 0.00 0.00 0.00 2.66
3915 4049 1.238439 CCGAAATGCAAGACACCACT 58.762 50.000 0.00 0.00 0.00 4.00
3916 4050 0.387239 GCCGAAATGCAAGACACCAC 60.387 55.000 0.00 0.00 0.00 4.16
3917 4051 0.537143 AGCCGAAATGCAAGACACCA 60.537 50.000 0.00 0.00 0.00 4.17
3918 4052 0.109597 CAGCCGAAATGCAAGACACC 60.110 55.000 0.00 0.00 0.00 4.16
3919 4053 0.593128 ACAGCCGAAATGCAAGACAC 59.407 50.000 0.00 0.00 0.00 3.67
3920 4054 1.001487 CAACAGCCGAAATGCAAGACA 60.001 47.619 0.00 0.00 0.00 3.41
3921 4055 1.666888 CCAACAGCCGAAATGCAAGAC 60.667 52.381 0.00 0.00 0.00 3.01
3922 4056 0.597568 CCAACAGCCGAAATGCAAGA 59.402 50.000 0.00 0.00 0.00 3.02
3923 4057 0.388907 CCCAACAGCCGAAATGCAAG 60.389 55.000 0.00 0.00 0.00 4.01
3924 4058 0.825425 TCCCAACAGCCGAAATGCAA 60.825 50.000 0.00 0.00 0.00 4.08
3925 4059 0.825425 TTCCCAACAGCCGAAATGCA 60.825 50.000 0.00 0.00 0.00 3.96
3926 4060 0.316841 TTTCCCAACAGCCGAAATGC 59.683 50.000 0.00 0.00 0.00 3.56
3927 4061 3.317603 AATTTCCCAACAGCCGAAATG 57.682 42.857 0.00 0.00 36.57 2.32
3928 4062 3.556843 CCAAATTTCCCAACAGCCGAAAT 60.557 43.478 0.00 0.00 37.72 2.17
3929 4063 2.224161 CCAAATTTCCCAACAGCCGAAA 60.224 45.455 0.00 0.00 0.00 3.46
3930 4064 1.342819 CCAAATTTCCCAACAGCCGAA 59.657 47.619 0.00 0.00 0.00 4.30
3931 4065 0.965439 CCAAATTTCCCAACAGCCGA 59.035 50.000 0.00 0.00 0.00 5.54
3932 4066 0.678950 ACCAAATTTCCCAACAGCCG 59.321 50.000 0.00 0.00 0.00 5.52
3935 4069 1.605202 CGCCACCAAATTTCCCAACAG 60.605 52.381 0.00 0.00 0.00 3.16
3941 4075 2.264480 GGCCGCCACCAAATTTCC 59.736 61.111 3.91 0.00 0.00 3.13
4054 4246 1.668151 GGAGTGTGTGGGCGAAGTC 60.668 63.158 0.00 0.00 0.00 3.01
4070 4262 1.486726 TGTGTGTGTGTGTGTATGGGA 59.513 47.619 0.00 0.00 0.00 4.37
4072 4264 1.260297 CGTGTGTGTGTGTGTGTATGG 59.740 52.381 0.00 0.00 0.00 2.74
4076 4268 1.375396 AGCGTGTGTGTGTGTGTGT 60.375 52.632 0.00 0.00 0.00 3.72
4077 4269 1.060779 CAGCGTGTGTGTGTGTGTG 59.939 57.895 0.00 0.00 0.00 3.82
4078 4270 2.106074 CCAGCGTGTGTGTGTGTGT 61.106 57.895 0.00 0.00 0.00 3.72
4079 4271 2.708865 CCAGCGTGTGTGTGTGTG 59.291 61.111 0.00 0.00 0.00 3.82
4080 4272 3.202001 GCCAGCGTGTGTGTGTGT 61.202 61.111 0.00 0.00 0.00 3.72
4081 4273 3.172099 CTGCCAGCGTGTGTGTGTG 62.172 63.158 0.00 0.00 0.00 3.82
4157 4349 0.463833 GGGGTTTGACTATGGGAGCG 60.464 60.000 0.00 0.00 0.00 5.03
4181 4373 4.060038 GCGCCATGGCAGCAAAGT 62.060 61.111 33.77 0.00 42.06 2.66
4273 4505 3.347958 AACACGTTGCATTTACAGGTG 57.652 42.857 6.62 6.62 34.12 4.00
4298 4558 2.223340 GCCAACGCCATCAGATTAACAG 60.223 50.000 0.00 0.00 0.00 3.16
4331 4591 1.142262 TCTGCACCCATCCATGATCAG 59.858 52.381 0.09 0.00 0.00 2.90
4346 4606 1.005748 CTCTCGTGCTGGTTCTGCA 60.006 57.895 0.00 0.00 36.05 4.41
4728 4988 3.013327 AGCAGCTCCTCCATGGCA 61.013 61.111 6.96 0.00 35.26 4.92
4962 5224 6.690194 AAGGTAGAAATGATCAATGAGTGC 57.310 37.500 0.00 0.00 0.00 4.40
5022 5288 3.502191 TTCCACACACAAAAGTGAAGC 57.498 42.857 2.22 0.00 42.05 3.86
5042 5308 2.009774 GCGTACTGGTTCTGCATGAAT 58.990 47.619 0.00 0.00 36.99 2.57
5043 5309 1.438651 GCGTACTGGTTCTGCATGAA 58.561 50.000 0.00 0.00 0.00 2.57
5044 5310 0.735978 CGCGTACTGGTTCTGCATGA 60.736 55.000 0.00 0.00 0.00 3.07
5045 5311 1.695893 CCGCGTACTGGTTCTGCATG 61.696 60.000 4.92 0.00 0.00 4.06
5276 5542 3.953775 CGGCACTTGACCCCCTGT 61.954 66.667 0.00 0.00 0.00 4.00
5327 5593 1.550130 CCTTGGAGTAGCCGTTGGGA 61.550 60.000 0.00 0.00 40.66 4.37
5351 5617 3.164977 TCCACGTGCTCCACCCAA 61.165 61.111 10.91 0.00 0.00 4.12
5580 5850 1.080434 GACGTGGAGCACCTCTGTC 60.080 63.158 0.71 6.60 37.04 3.51
5695 5966 4.012895 GTCCACTGGTGCGCAACG 62.013 66.667 22.39 17.77 0.00 4.10
5698 5969 4.927782 GTGGTCCACTGGTGCGCA 62.928 66.667 15.22 5.66 0.00 6.09
5863 6134 2.359975 TCGCTGCGAGAGGTCTCA 60.360 61.111 22.24 0.00 43.00 3.27
5920 6191 8.284945 TCATCAACCATAGAATTTCAAGGAAG 57.715 34.615 0.00 0.00 0.00 3.46
5924 6195 9.512435 GTTCATCATCAACCATAGAATTTCAAG 57.488 33.333 0.00 0.00 0.00 3.02
5926 6197 8.461222 GTGTTCATCATCAACCATAGAATTTCA 58.539 33.333 0.00 0.00 0.00 2.69
5927 6198 8.680903 AGTGTTCATCATCAACCATAGAATTTC 58.319 33.333 0.00 0.00 0.00 2.17
5932 6203 6.298441 TGAGTGTTCATCATCAACCATAGA 57.702 37.500 0.00 0.00 0.00 1.98
5936 6207 7.943079 AAATATGAGTGTTCATCATCAACCA 57.057 32.000 0.00 0.00 42.97 3.67
5959 6237 1.040339 GTCCCACTGCCAACACCAAA 61.040 55.000 0.00 0.00 0.00 3.28
6029 6307 3.049674 CAGTTGCCATGGTCGCGT 61.050 61.111 14.67 0.00 0.00 6.01
6079 6357 7.738847 TGAGGTTATTGCATGATCAGATTCTA 58.261 34.615 0.09 0.00 0.00 2.10
6106 6387 7.927092 TCCATGGTTAATTCGATTATTACACGA 59.073 33.333 12.58 0.00 0.00 4.35
6112 6393 7.872483 GCCAAATCCATGGTTAATTCGATTATT 59.128 33.333 12.58 0.00 42.75 1.40
6118 6399 3.181491 ACGCCAAATCCATGGTTAATTCG 60.181 43.478 12.58 12.27 42.75 3.34
6134 6423 1.535028 CTCTGCACATAAACACGCCAA 59.465 47.619 0.00 0.00 0.00 4.52
6136 6425 0.179189 GCTCTGCACATAAACACGCC 60.179 55.000 0.00 0.00 0.00 5.68
6269 6558 2.986979 TAGTCTGTGTCGCCGCCA 60.987 61.111 0.00 0.00 0.00 5.69
6598 6887 6.487331 ACCCAACACATACATTTCTTACGAAA 59.513 34.615 0.00 0.00 42.83 3.46
6604 6893 9.088987 AGATAAAACCCAACACATACATTTCTT 57.911 29.630 0.00 0.00 0.00 2.52
6612 6901 8.877864 AGAATTCAGATAAAACCCAACACATA 57.122 30.769 8.44 0.00 0.00 2.29
6667 6957 3.124578 TGAAGGCTCCAAAATTTTGCC 57.875 42.857 22.90 20.52 43.52 4.52
6762 7052 0.035725 GGAGTTTCCCCGGTCGAATT 60.036 55.000 0.00 0.00 0.00 2.17
6788 7078 5.645624 TGTTTTCTTGCATGAAACGAAGAA 58.354 33.333 23.14 8.02 35.91 2.52
6799 7089 5.064452 TGTTTTCGCAAATGTTTTCTTGCAT 59.936 32.000 7.48 0.00 46.66 3.96
6912 7203 3.057033 TCGACGAAGAACCCTAGAAAAGG 60.057 47.826 0.00 0.00 46.09 3.11
6949 7240 9.604626 GAATTACAAGACTGACTGAAGAAAATG 57.395 33.333 0.00 0.00 0.00 2.32
7061 7352 1.068333 CCCAATCCAAAGCAACAGACG 60.068 52.381 0.00 0.00 0.00 4.18
7067 7358 9.007901 CAAAATTATAAACCCAATCCAAAGCAA 57.992 29.630 0.00 0.00 0.00 3.91
7165 7734 1.423584 TGTCTTCACTGAAGCAGGGA 58.576 50.000 13.24 0.00 42.67 4.20
7166 7735 2.260844 TTGTCTTCACTGAAGCAGGG 57.739 50.000 13.24 0.00 39.29 4.45
7167 7736 3.567164 ACATTTGTCTTCACTGAAGCAGG 59.433 43.478 13.24 10.16 39.29 4.85
7182 7751 3.008049 AGCCTCGAGGAACTAACATTTGT 59.992 43.478 35.69 0.00 41.55 2.83
7198 7767 1.446272 GTTCCGTCCTTGAGCCTCG 60.446 63.158 0.00 0.00 0.00 4.63
7216 7785 3.181493 CGCAGAGATTTGGAAGGAAATGG 60.181 47.826 0.00 0.00 0.00 3.16
7239 7808 9.679661 TGCTGAATTCTACAATTCTTATTGGTA 57.320 29.630 7.05 0.00 45.80 3.25
7240 7809 8.579850 TGCTGAATTCTACAATTCTTATTGGT 57.420 30.769 7.05 0.00 45.80 3.67
7276 7845 6.227522 TGTGATTGAGGACGAAAAATGAGTA 58.772 36.000 0.00 0.00 0.00 2.59
7321 7890 6.950041 ACATCTGGAAATGGAAAGATTTCTCA 59.050 34.615 5.37 2.90 40.68 3.27
7324 7893 5.809051 GCACATCTGGAAATGGAAAGATTTC 59.191 40.000 0.00 0.00 40.31 2.17
7325 7894 5.246656 TGCACATCTGGAAATGGAAAGATTT 59.753 36.000 0.00 0.00 0.00 2.17
7366 7935 2.292828 AGGGCAGCAGTGTTGTAAAT 57.707 45.000 8.86 0.00 0.00 1.40
7426 7999 5.460419 GTGGATAGTATTCAGAAACGCTCAG 59.540 44.000 0.00 0.00 0.00 3.35
7444 8017 1.074727 CAGTTTGTGGGGGTGTGGATA 59.925 52.381 0.00 0.00 0.00 2.59
7448 8021 1.756172 TGCAGTTTGTGGGGGTGTG 60.756 57.895 0.00 0.00 0.00 3.82
7508 8081 6.153000 GGTCTGTTAGTCTGATGAGTTCCTAA 59.847 42.308 0.00 0.00 0.00 2.69
7509 8082 5.652891 GGTCTGTTAGTCTGATGAGTTCCTA 59.347 44.000 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.