Multiple sequence alignment - TraesCS2A01G473900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G473900 chr2A 100.000 6612 0 0 1 6612 715330768 715337379 0.000000e+00 12211.0
1 TraesCS2A01G473900 chr2A 97.506 842 21 0 1 842 715323739 715324580 0.000000e+00 1439.0
2 TraesCS2A01G473900 chr2A 97.387 842 22 0 1 842 715316727 715317568 0.000000e+00 1434.0
3 TraesCS2A01G473900 chr2D 94.247 3355 151 32 853 4186 577147179 577150512 0.000000e+00 5088.0
4 TraesCS2A01G473900 chr2D 93.078 2037 79 27 4609 6612 577150868 577152875 0.000000e+00 2924.0
5 TraesCS2A01G473900 chr2D 91.781 146 11 1 4335 4480 577150510 577150654 1.120000e-47 202.0
6 TraesCS2A01G473900 chr2B 94.664 1743 63 5 849 2565 694048637 694050375 0.000000e+00 2676.0
7 TraesCS2A01G473900 chr2B 93.773 1638 88 10 2564 4198 694050537 694052163 0.000000e+00 2447.0
8 TraesCS2A01G473900 chr2B 92.609 1556 65 24 4609 6135 694052604 694054138 0.000000e+00 2191.0
9 TraesCS2A01G473900 chr2B 97.379 496 11 2 6117 6612 694054393 694054886 0.000000e+00 843.0
10 TraesCS2A01G473900 chr2B 91.720 157 12 1 4324 4480 694052233 694052388 4.020000e-52 217.0
11 TraesCS2A01G473900 chr2B 89.937 159 11 4 4188 4345 251374960 251374806 4.040000e-47 200.0
12 TraesCS2A01G473900 chr2B 100.000 42 0 0 5891 5932 694054136 694054177 1.980000e-10 78.7
13 TraesCS2A01G473900 chr5A 96.793 842 27 0 1 842 781992 782833 0.000000e+00 1406.0
14 TraesCS2A01G473900 chr5A 96.675 842 28 0 1 842 528925706 528926547 0.000000e+00 1400.0
15 TraesCS2A01G473900 chr5A 96.556 842 29 0 1 842 110431913 110432754 0.000000e+00 1395.0
16 TraesCS2A01G473900 chr5A 96.556 842 29 0 1 842 245942161 245943002 0.000000e+00 1395.0
17 TraesCS2A01G473900 chr3A 96.675 842 28 0 1 842 586373486 586372645 0.000000e+00 1400.0
18 TraesCS2A01G473900 chrUn 96.556 842 29 0 1 842 371661021 371660180 0.000000e+00 1395.0
19 TraesCS2A01G473900 chr6A 96.556 842 29 0 1 842 608025221 608024380 0.000000e+00 1395.0
20 TraesCS2A01G473900 chr6A 91.946 149 11 1 4188 4335 82107503 82107355 2.420000e-49 207.0
21 TraesCS2A01G473900 chr4B 92.258 155 10 2 4184 4337 78607615 78607768 1.120000e-52 219.0
22 TraesCS2A01G473900 chr4B 90.244 164 13 3 4184 4346 78607766 78607927 1.870000e-50 211.0
23 TraesCS2A01G473900 chr4B 91.275 149 11 2 4190 4337 78607470 78607617 1.120000e-47 202.0
24 TraesCS2A01G473900 chr6B 92.763 152 8 2 4185 4335 140845532 140845681 4.020000e-52 217.0
25 TraesCS2A01G473900 chr4A 90.909 154 13 1 4184 4337 556244951 556245103 8.690000e-49 206.0
26 TraesCS2A01G473900 chr1D 89.937 159 13 3 4180 4337 7349699 7349855 1.120000e-47 202.0
27 TraesCS2A01G473900 chr5D 90.260 154 13 2 4185 4337 256749799 256749951 4.040000e-47 200.0
28 TraesCS2A01G473900 chr7B 93.182 44 2 1 6404 6447 381828848 381828806 5.540000e-06 63.9
29 TraesCS2A01G473900 chr7A 93.182 44 2 1 6404 6447 436698573 436698531 5.540000e-06 63.9
30 TraesCS2A01G473900 chr7D 97.222 36 0 1 6404 6439 386730128 386730094 7.160000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G473900 chr2A 715330768 715337379 6611 False 12211.000000 12211 100.000000 1 6612 1 chr2A.!!$F3 6611
1 TraesCS2A01G473900 chr2A 715323739 715324580 841 False 1439.000000 1439 97.506000 1 842 1 chr2A.!!$F2 841
2 TraesCS2A01G473900 chr2A 715316727 715317568 841 False 1434.000000 1434 97.387000 1 842 1 chr2A.!!$F1 841
3 TraesCS2A01G473900 chr2D 577147179 577152875 5696 False 2738.000000 5088 93.035333 853 6612 3 chr2D.!!$F1 5759
4 TraesCS2A01G473900 chr2B 694048637 694054886 6249 False 1408.783333 2676 95.024167 849 6612 6 chr2B.!!$F1 5763
5 TraesCS2A01G473900 chr5A 781992 782833 841 False 1406.000000 1406 96.793000 1 842 1 chr5A.!!$F1 841
6 TraesCS2A01G473900 chr5A 528925706 528926547 841 False 1400.000000 1400 96.675000 1 842 1 chr5A.!!$F4 841
7 TraesCS2A01G473900 chr5A 110431913 110432754 841 False 1395.000000 1395 96.556000 1 842 1 chr5A.!!$F2 841
8 TraesCS2A01G473900 chr5A 245942161 245943002 841 False 1395.000000 1395 96.556000 1 842 1 chr5A.!!$F3 841
9 TraesCS2A01G473900 chr3A 586372645 586373486 841 True 1400.000000 1400 96.675000 1 842 1 chr3A.!!$R1 841
10 TraesCS2A01G473900 chrUn 371660180 371661021 841 True 1395.000000 1395 96.556000 1 842 1 chrUn.!!$R1 841
11 TraesCS2A01G473900 chr6A 608024380 608025221 841 True 1395.000000 1395 96.556000 1 842 1 chr6A.!!$R2 841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 843 0.111061 TGTTCCTGAGGTGCTTGCAT 59.889 50.000 0.00 0.0 0.00 3.96 F
845 846 0.401356 TCCTGAGGTGCTTGCATTGA 59.599 50.000 0.00 0.0 0.00 2.57 F
946 947 0.519077 CTCTTGCTCGAAGCCCAAAC 59.481 55.000 4.73 0.0 41.51 2.93 F
1050 1051 0.815734 GCAGCTACGACTTCCACCTA 59.184 55.000 0.00 0.0 0.00 3.08 F
1974 2002 1.065854 AGATCTTGAACAGCTTCCCCG 60.066 52.381 0.00 0.0 0.00 5.73 F
3408 3599 1.529865 GGGACGTCAACAACTGTAAGC 59.470 52.381 18.91 0.0 37.60 3.09 F
4583 4786 0.179009 TGCCTGCTCTTGCTGTTCTT 60.179 50.000 0.00 0.0 40.48 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1836 1.205893 TGCCCAACACAACAAGAAACC 59.794 47.619 0.0 0.0 0.00 3.27 R
2546 2574 1.967066 ACTAGCACACAGAAGAGCACT 59.033 47.619 0.0 0.0 0.00 4.40 R
2547 2575 2.447244 ACTAGCACACAGAAGAGCAC 57.553 50.000 0.0 0.0 0.00 4.40 R
2709 2900 5.835911 AATAATGCTCATCACGAGATTCG 57.164 39.130 0.0 0.0 45.45 3.34 R
3809 4001 2.083774 TGACGAAATGATGGCAGTTCC 58.916 47.619 0.0 0.0 44.01 3.62 R
4670 4979 0.322322 ATGGCCCAACACAAATGCAG 59.678 50.000 0.0 0.0 0.00 4.41 R
6517 7138 0.036164 CCACAGATTGTTCCCCGTGA 59.964 55.000 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 5.292765 CAGTGGCTATCGTTATGTTCTCAT 58.707 41.667 0.00 0.00 38.00 2.90
414 415 6.796426 GCACTCTATTAGATATGGTGCGATA 58.204 40.000 15.71 0.00 38.95 2.92
516 517 3.116300 CGTCGAAATCCATTGAGACGAT 58.884 45.455 17.77 0.00 45.07 3.73
609 610 6.773976 TGTCAAGAAACTTCAACCTGAAAT 57.226 33.333 0.00 0.00 35.73 2.17
800 801 8.070034 TGATGAAGTATTACCTCTTAAACCGA 57.930 34.615 0.00 0.00 0.00 4.69
837 838 3.515602 AGAAAATGTTCCTGAGGTGCT 57.484 42.857 0.00 0.00 33.92 4.40
842 843 0.111061 TGTTCCTGAGGTGCTTGCAT 59.889 50.000 0.00 0.00 0.00 3.96
843 844 1.251251 GTTCCTGAGGTGCTTGCATT 58.749 50.000 0.00 0.00 0.00 3.56
844 845 1.068055 GTTCCTGAGGTGCTTGCATTG 60.068 52.381 0.00 0.00 0.00 2.82
845 846 0.401356 TCCTGAGGTGCTTGCATTGA 59.599 50.000 0.00 0.00 0.00 2.57
846 847 0.809385 CCTGAGGTGCTTGCATTGAG 59.191 55.000 0.00 0.00 0.00 3.02
847 848 1.612462 CCTGAGGTGCTTGCATTGAGA 60.612 52.381 0.00 0.00 0.00 3.27
860 861 5.503662 TGCATTGAGATTTTATCGTGCAT 57.496 34.783 0.00 0.00 35.27 3.96
861 862 5.513376 TGCATTGAGATTTTATCGTGCATC 58.487 37.500 0.00 0.00 35.27 3.91
946 947 0.519077 CTCTTGCTCGAAGCCCAAAC 59.481 55.000 4.73 0.00 41.51 2.93
1050 1051 0.815734 GCAGCTACGACTTCCACCTA 59.184 55.000 0.00 0.00 0.00 3.08
1125 1126 2.301738 CCCCAACCTCCTCCAGTCC 61.302 68.421 0.00 0.00 0.00 3.85
1179 1181 4.954118 TCCCCTGACCCGTGCTGT 62.954 66.667 0.00 0.00 0.00 4.40
1366 1368 2.743928 GGCGTGCTCCTTCTGGTG 60.744 66.667 0.00 0.00 34.23 4.17
1396 1398 6.798482 TCGACTGACCAAATTATGTACGTAT 58.202 36.000 0.00 0.00 0.00 3.06
1414 1416 8.794553 TGTACGTATTTACATTTTGGTGGAAAT 58.205 29.630 0.00 2.97 43.32 2.17
1438 1440 5.592688 TGGTTCAAGTCTCTTTAAGTTTGGG 59.407 40.000 0.00 0.00 0.00 4.12
1511 1538 4.952957 TGCTGTTAGAGAGCTTGATCTAGT 59.047 41.667 6.05 0.00 37.35 2.57
1610 1637 9.246670 TGAAAAGAGTCATTCACATTGGATAAT 57.753 29.630 7.15 0.00 30.94 1.28
1647 1674 6.845302 TCATTTGTGCAAATAGTTCAGCTAG 58.155 36.000 9.48 0.00 38.84 3.42
1664 1691 6.746120 TCAGCTAGGACCGTAATAAAAGATC 58.254 40.000 0.00 0.00 0.00 2.75
1870 1898 5.227569 TCTACAAGCCTCAAAATCACTCA 57.772 39.130 0.00 0.00 0.00 3.41
1889 1917 5.973565 CACTCAATGTTTCTTTCTTGGTGAC 59.026 40.000 0.00 0.00 0.00 3.67
1974 2002 1.065854 AGATCTTGAACAGCTTCCCCG 60.066 52.381 0.00 0.00 0.00 5.73
2228 2256 6.044682 CCTCATGTATTTGCTTTTGATTCCC 58.955 40.000 0.00 0.00 0.00 3.97
2235 2263 2.870175 TGCTTTTGATTCCCGAGGAAA 58.130 42.857 9.07 0.00 45.41 3.13
2238 2266 3.696548 GCTTTTGATTCCCGAGGAAATCT 59.303 43.478 9.07 0.00 45.41 2.40
2244 2272 5.858381 TGATTCCCGAGGAAATCTATTCTG 58.142 41.667 9.07 0.00 45.41 3.02
2278 2306 6.595326 CCTCAAATGACTTGATAGTTGCTACA 59.405 38.462 0.13 0.00 43.20 2.74
2286 2314 5.701290 ACTTGATAGTTGCTACAGGAAACAC 59.299 40.000 0.13 0.00 35.93 3.32
2289 2317 5.468746 TGATAGTTGCTACAGGAAACACAAC 59.531 40.000 0.13 0.00 35.93 3.32
2298 2326 6.016610 GCTACAGGAAACACAACCATTTTAGA 60.017 38.462 0.00 0.00 0.00 2.10
2635 2826 7.874528 ACAATATAGCATGAATCTCGTGATGAA 59.125 33.333 0.00 0.00 35.46 2.57
2742 2933 9.836076 CGTGATGAGCATTATTTATGATGATTT 57.164 29.630 0.00 0.00 36.26 2.17
2767 2958 2.983229 AGAACTGCTTATCCTGCACTG 58.017 47.619 0.00 0.00 36.37 3.66
2978 3169 7.683578 TGAGTGCAATATCTAGCTCCAATATT 58.316 34.615 0.00 0.00 0.00 1.28
3335 3526 5.530915 CCCACAGTCTGACAGATTAAAACAA 59.469 40.000 8.73 0.00 0.00 2.83
3355 3546 2.655090 TCACTGAAAATGGCACCTCA 57.345 45.000 0.00 0.00 0.00 3.86
3370 3561 5.221843 TGGCACCTCACTTTCTTACTGTATT 60.222 40.000 0.00 0.00 0.00 1.89
3408 3599 1.529865 GGGACGTCAACAACTGTAAGC 59.470 52.381 18.91 0.00 37.60 3.09
3449 3640 3.379057 TGCAGATGCTAATGACCAACATG 59.621 43.478 6.35 0.00 42.66 3.21
3477 3669 9.247126 TGTTGATTTGACATTCTATGTTTGTTG 57.753 29.630 0.00 0.00 45.03 3.33
3511 3703 2.899900 TGTGTGCTCTGATTCCAGTAGT 59.100 45.455 0.00 0.00 41.16 2.73
3602 3794 6.519353 TTTGTATCACGTGTCAGTTACTTG 57.481 37.500 16.51 0.00 0.00 3.16
3612 3804 6.157211 CGTGTCAGTTACTTGTCCTTTCTAT 58.843 40.000 0.00 0.00 0.00 1.98
3679 3871 3.228188 TGTCCCTTCTCACAAGCAAAT 57.772 42.857 0.00 0.00 0.00 2.32
3687 3879 5.381174 TTCTCACAAGCAAATCAAGGATG 57.619 39.130 0.00 0.00 0.00 3.51
3697 3889 6.012745 AGCAAATCAAGGATGTCTTACCTTT 58.987 36.000 0.00 0.00 43.54 3.11
3828 4020 2.083774 TGGAACTGCCATCATTTCGTC 58.916 47.619 0.00 0.00 43.33 4.20
3833 4025 2.228822 ACTGCCATCATTTCGTCAAACC 59.771 45.455 0.00 0.00 0.00 3.27
3835 4027 2.890311 TGCCATCATTTCGTCAAACCTT 59.110 40.909 0.00 0.00 0.00 3.50
3883 4075 9.598517 AAGTTTAAAATGCTTTGAATGTCTCAA 57.401 25.926 0.00 0.00 42.48 3.02
3884 4076 9.252962 AGTTTAAAATGCTTTGAATGTCTCAAG 57.747 29.630 0.00 0.00 44.84 3.02
3885 4077 9.034544 GTTTAAAATGCTTTGAATGTCTCAAGT 57.965 29.630 0.00 0.00 44.84 3.16
3886 4078 8.578308 TTAAAATGCTTTGAATGTCTCAAGTG 57.422 30.769 0.00 0.00 44.84 3.16
3887 4079 5.779529 AATGCTTTGAATGTCTCAAGTGT 57.220 34.783 0.00 0.00 44.84 3.55
3888 4080 6.882610 AATGCTTTGAATGTCTCAAGTGTA 57.117 33.333 0.00 0.00 44.84 2.90
3889 4081 5.929697 TGCTTTGAATGTCTCAAGTGTAG 57.070 39.130 0.00 0.00 44.84 2.74
3890 4082 5.368145 TGCTTTGAATGTCTCAAGTGTAGT 58.632 37.500 0.00 0.00 44.84 2.73
3891 4083 5.237127 TGCTTTGAATGTCTCAAGTGTAGTG 59.763 40.000 0.00 0.00 44.84 2.74
3892 4084 5.237344 GCTTTGAATGTCTCAAGTGTAGTGT 59.763 40.000 0.00 0.00 44.84 3.55
3893 4085 6.423905 GCTTTGAATGTCTCAAGTGTAGTGTA 59.576 38.462 0.00 0.00 44.84 2.90
3894 4086 7.569591 GCTTTGAATGTCTCAAGTGTAGTGTAC 60.570 40.741 0.00 0.00 44.84 2.90
3895 4087 6.399639 TGAATGTCTCAAGTGTAGTGTACA 57.600 37.500 0.00 0.00 36.08 2.90
3896 4088 6.993079 TGAATGTCTCAAGTGTAGTGTACAT 58.007 36.000 0.00 0.00 41.34 2.29
3897 4089 6.868339 TGAATGTCTCAAGTGTAGTGTACATG 59.132 38.462 0.00 0.00 41.34 3.21
3922 4114 6.708949 GGACAAGTAGTGGTTTAGAATGAACA 59.291 38.462 0.00 0.00 0.00 3.18
3923 4115 7.095187 GGACAAGTAGTGGTTTAGAATGAACAG 60.095 40.741 0.00 0.00 0.00 3.16
3924 4116 6.204882 ACAAGTAGTGGTTTAGAATGAACAGC 59.795 38.462 0.00 0.00 0.00 4.40
3994 4189 7.401955 TGTTCATATGCATGTGTGGATTTAA 57.598 32.000 21.13 5.51 37.58 1.52
4018 4213 4.314740 TTGGTTATTTGCTCACAACACC 57.685 40.909 0.00 0.00 34.87 4.16
4026 4221 4.409718 TTGCTCACAACACCTGTACTAA 57.590 40.909 0.00 0.00 36.10 2.24
4030 4225 4.448060 GCTCACAACACCTGTACTAAGTTC 59.552 45.833 0.00 0.00 36.10 3.01
4033 4228 4.211374 CACAACACCTGTACTAAGTTCTGC 59.789 45.833 0.00 0.00 36.10 4.26
4052 4247 9.035607 AGTTCTGCTGATATATTTGAGTTTACG 57.964 33.333 0.00 0.00 0.00 3.18
4061 4256 9.422196 GATATATTTGAGTTTACGCTGAACAAC 57.578 33.333 0.00 0.00 0.00 3.32
4067 4262 3.560068 AGTTTACGCTGAACAACTTCCTG 59.440 43.478 0.00 0.00 0.00 3.86
4075 4270 5.180492 CGCTGAACAACTTCCTGGTTATAAA 59.820 40.000 0.00 0.00 0.00 1.40
4115 4310 6.528072 GGAAAAAGCTGTCGGATTTCTTATTG 59.472 38.462 0.00 0.00 31.85 1.90
4148 4343 1.105759 GCTCCCCTGACATCATTGCC 61.106 60.000 0.00 0.00 0.00 4.52
4163 4358 3.133362 TCATTGCCCTACTAAAGGTACCG 59.867 47.826 6.18 0.00 44.90 4.02
4179 4374 3.315749 GGTACCGACTGAGTGATCCTTAG 59.684 52.174 0.00 0.00 33.12 2.18
4187 4382 6.293516 CGACTGAGTGATCCTTAGTATGTACC 60.294 46.154 8.09 0.00 39.91 3.34
4188 4383 6.432581 ACTGAGTGATCCTTAGTATGTACCA 58.567 40.000 6.79 0.00 38.18 3.25
4193 4388 5.834204 GTGATCCTTAGTATGTACCACCTCT 59.166 44.000 0.00 0.00 0.00 3.69
4198 4393 5.657302 CCTTAGTATGTACCACCTCTGTTCT 59.343 44.000 0.00 0.00 0.00 3.01
4199 4394 6.405953 CCTTAGTATGTACCACCTCTGTTCTG 60.406 46.154 0.00 0.00 0.00 3.02
4202 4397 5.721960 AGTATGTACCACCTCTGTTCTGAAT 59.278 40.000 0.00 0.00 0.00 2.57
4205 4400 6.620877 TGTACCACCTCTGTTCTGAATTAT 57.379 37.500 0.00 0.00 0.00 1.28
4207 4402 8.141298 TGTACCACCTCTGTTCTGAATTATAA 57.859 34.615 0.00 0.00 0.00 0.98
4211 4406 6.477033 CCACCTCTGTTCTGAATTATAAGACG 59.523 42.308 0.00 0.00 0.00 4.18
4212 4407 7.036220 CACCTCTGTTCTGAATTATAAGACGT 58.964 38.462 0.00 0.00 0.00 4.34
4213 4408 7.545965 CACCTCTGTTCTGAATTATAAGACGTT 59.454 37.037 0.00 0.00 0.00 3.99
4214 4409 8.095169 ACCTCTGTTCTGAATTATAAGACGTTT 58.905 33.333 0.00 0.00 0.00 3.60
4215 4410 8.936864 CCTCTGTTCTGAATTATAAGACGTTTT 58.063 33.333 0.00 0.00 0.00 2.43
4216 4411 9.746711 CTCTGTTCTGAATTATAAGACGTTTTG 57.253 33.333 0.83 0.00 0.00 2.44
4217 4412 8.717821 TCTGTTCTGAATTATAAGACGTTTTGG 58.282 33.333 0.83 0.00 0.00 3.28
4218 4413 8.610248 TGTTCTGAATTATAAGACGTTTTGGA 57.390 30.769 0.83 0.00 0.00 3.53
4219 4414 9.226606 TGTTCTGAATTATAAGACGTTTTGGAT 57.773 29.630 0.83 0.00 0.00 3.41
4232 4427 8.746052 AGACGTTTTGGATATTTCAATATGGA 57.254 30.769 0.00 0.00 31.96 3.41
4233 4428 8.621286 AGACGTTTTGGATATTTCAATATGGAC 58.379 33.333 0.00 0.00 31.96 4.02
4234 4429 8.519799 ACGTTTTGGATATTTCAATATGGACT 57.480 30.769 0.00 0.00 31.96 3.85
4236 4431 9.878599 CGTTTTGGATATTTCAATATGGACTAC 57.121 33.333 0.00 0.00 31.96 2.73
4246 4441 9.770097 ATTTCAATATGGACTACATACAGACTG 57.230 33.333 0.00 0.00 44.41 3.51
4249 4444 8.977412 TCAATATGGACTACATACAGACTGAAA 58.023 33.333 10.08 0.00 44.41 2.69
4251 4446 9.770097 AATATGGACTACATACAGACTGAAATG 57.230 33.333 10.08 14.00 44.41 2.32
4252 4447 6.850752 TGGACTACATACAGACTGAAATGA 57.149 37.500 21.47 9.94 0.00 2.57
4254 4449 6.437477 TGGACTACATACAGACTGAAATGAGT 59.563 38.462 21.47 18.93 0.00 3.41
4255 4450 6.754209 GGACTACATACAGACTGAAATGAGTG 59.246 42.308 21.47 14.86 0.00 3.51
4256 4451 7.363007 GGACTACATACAGACTGAAATGAGTGA 60.363 40.741 21.47 8.83 0.00 3.41
4257 4452 7.896811 ACTACATACAGACTGAAATGAGTGAA 58.103 34.615 21.47 7.35 0.00 3.18
4258 4453 7.815068 ACTACATACAGACTGAAATGAGTGAAC 59.185 37.037 21.47 0.00 0.00 3.18
4259 4454 6.524734 ACATACAGACTGAAATGAGTGAACA 58.475 36.000 21.47 0.00 0.00 3.18
4260 4455 6.992123 ACATACAGACTGAAATGAGTGAACAA 59.008 34.615 21.47 0.00 0.00 2.83
4261 4456 7.498900 ACATACAGACTGAAATGAGTGAACAAA 59.501 33.333 21.47 0.00 0.00 2.83
4262 4457 6.124088 ACAGACTGAAATGAGTGAACAAAC 57.876 37.500 10.08 0.00 0.00 2.93
4263 4458 5.647658 ACAGACTGAAATGAGTGAACAAACA 59.352 36.000 10.08 0.00 0.00 2.83
4264 4459 5.967674 CAGACTGAAATGAGTGAACAAACAC 59.032 40.000 0.00 0.00 40.60 3.32
4265 4460 5.647658 AGACTGAAATGAGTGAACAAACACA 59.352 36.000 0.00 0.00 42.45 3.72
4266 4461 5.640732 ACTGAAATGAGTGAACAAACACAC 58.359 37.500 0.00 0.00 42.45 3.82
4268 4463 6.597672 ACTGAAATGAGTGAACAAACACACTA 59.402 34.615 0.00 0.00 45.54 2.74
4269 4464 7.120579 ACTGAAATGAGTGAACAAACACACTAA 59.879 33.333 0.00 0.00 45.54 2.24
4270 4465 7.821652 TGAAATGAGTGAACAAACACACTAAA 58.178 30.769 0.00 0.00 45.54 1.85
4271 4466 8.465999 TGAAATGAGTGAACAAACACACTAAAT 58.534 29.630 0.00 0.00 45.54 1.40
4272 4467 8.633075 AAATGAGTGAACAAACACACTAAATG 57.367 30.769 0.00 0.00 45.54 2.32
4273 4468 5.577835 TGAGTGAACAAACACACTAAATGC 58.422 37.500 0.00 0.00 45.54 3.56
4274 4469 4.597079 AGTGAACAAACACACTAAATGCG 58.403 39.130 0.00 0.00 44.06 4.73
4275 4470 4.095782 AGTGAACAAACACACTAAATGCGT 59.904 37.500 0.00 0.00 44.06 5.24
4276 4471 4.436523 GTGAACAAACACACTAAATGCGTC 59.563 41.667 0.00 0.00 40.11 5.19
4277 4472 4.334203 TGAACAAACACACTAAATGCGTCT 59.666 37.500 0.00 0.00 0.00 4.18
4278 4473 4.209452 ACAAACACACTAAATGCGTCTG 57.791 40.909 0.00 0.00 0.00 3.51
4279 4474 3.625764 ACAAACACACTAAATGCGTCTGT 59.374 39.130 0.00 0.00 0.00 3.41
4280 4475 4.812091 ACAAACACACTAAATGCGTCTGTA 59.188 37.500 0.00 0.00 0.00 2.74
4281 4476 5.468746 ACAAACACACTAAATGCGTCTGTAT 59.531 36.000 0.00 0.00 0.00 2.29
4282 4477 6.647481 ACAAACACACTAAATGCGTCTGTATA 59.353 34.615 0.00 0.00 0.00 1.47
4283 4478 6.642683 AACACACTAAATGCGTCTGTATAC 57.357 37.500 0.00 0.00 0.00 1.47
4284 4479 5.716094 ACACACTAAATGCGTCTGTATACA 58.284 37.500 5.25 5.25 0.00 2.29
4285 4480 6.338146 ACACACTAAATGCGTCTGTATACAT 58.662 36.000 5.91 0.00 0.00 2.29
4286 4481 6.475727 ACACACTAAATGCGTCTGTATACATC 59.524 38.462 5.91 2.34 0.00 3.06
4287 4482 5.983720 ACACTAAATGCGTCTGTATACATCC 59.016 40.000 5.91 0.00 0.00 3.51
4288 4483 5.983118 CACTAAATGCGTCTGTATACATCCA 59.017 40.000 5.91 2.09 0.00 3.41
4289 4484 6.478673 CACTAAATGCGTCTGTATACATCCAA 59.521 38.462 5.91 0.00 0.00 3.53
4290 4485 7.171508 CACTAAATGCGTCTGTATACATCCAAT 59.828 37.037 5.91 0.00 0.00 3.16
4291 4486 6.942532 AAATGCGTCTGTATACATCCAATT 57.057 33.333 5.91 1.24 0.00 2.32
4292 4487 6.545504 AATGCGTCTGTATACATCCAATTC 57.454 37.500 5.91 0.00 0.00 2.17
4293 4488 5.017294 TGCGTCTGTATACATCCAATTCA 57.983 39.130 5.91 0.00 0.00 2.57
4294 4489 5.049828 TGCGTCTGTATACATCCAATTCAG 58.950 41.667 5.91 0.00 0.00 3.02
4295 4490 5.163457 TGCGTCTGTATACATCCAATTCAGA 60.163 40.000 5.91 0.00 30.96 3.27
4296 4491 5.753438 GCGTCTGTATACATCCAATTCAGAA 59.247 40.000 5.91 0.00 34.03 3.02
4297 4492 6.257849 GCGTCTGTATACATCCAATTCAGAAA 59.742 38.462 5.91 0.00 34.03 2.52
4298 4493 7.201609 GCGTCTGTATACATCCAATTCAGAAAA 60.202 37.037 5.91 0.00 34.03 2.29
4299 4494 8.664798 CGTCTGTATACATCCAATTCAGAAAAA 58.335 33.333 5.91 0.00 34.03 1.94
4340 4535 6.600882 AATTCTGAACGAAGGGAGTAACTA 57.399 37.500 0.00 0.00 34.56 2.24
4342 4537 6.600882 TTCTGAACGAAGGGAGTAACTATT 57.399 37.500 0.00 0.00 0.00 1.73
4345 4540 8.302515 TCTGAACGAAGGGAGTAACTATTTAT 57.697 34.615 0.00 0.00 0.00 1.40
4351 4546 8.456471 ACGAAGGGAGTAACTATTTATTTTTGC 58.544 33.333 0.00 0.00 0.00 3.68
4407 4602 9.930693 TTTCAAACAGTTTTACATAACAACCTT 57.069 25.926 0.00 0.00 0.00 3.50
4409 4604 8.740906 TCAAACAGTTTTACATAACAACCTTGA 58.259 29.630 0.00 0.00 0.00 3.02
4442 4637 6.015856 TGCAGAAGCCTATTACTGATAGACTC 60.016 42.308 0.00 0.00 38.38 3.36
4486 4681 4.237724 GCAAAGGCAAGTTTATCTGAACC 58.762 43.478 0.00 0.00 40.72 3.62
4487 4682 4.261994 GCAAAGGCAAGTTTATCTGAACCA 60.262 41.667 0.00 0.00 40.72 3.67
4489 4684 5.649782 AAGGCAAGTTTATCTGAACCATG 57.350 39.130 0.00 0.00 0.00 3.66
4491 4686 4.702131 AGGCAAGTTTATCTGAACCATGAC 59.298 41.667 0.00 0.00 0.00 3.06
4492 4687 4.458989 GGCAAGTTTATCTGAACCATGACA 59.541 41.667 0.00 0.00 29.80 3.58
4493 4688 5.048083 GGCAAGTTTATCTGAACCATGACAA 60.048 40.000 0.00 0.00 29.80 3.18
4495 4690 7.092716 GCAAGTTTATCTGAACCATGACAATT 58.907 34.615 0.00 0.00 0.00 2.32
4496 4691 8.243426 GCAAGTTTATCTGAACCATGACAATTA 58.757 33.333 0.00 0.00 0.00 1.40
4504 4699 9.818270 ATCTGAACCATGACAATTATTATGGAT 57.182 29.630 14.02 2.23 42.05 3.41
4505 4700 9.288576 TCTGAACCATGACAATTATTATGGATC 57.711 33.333 14.02 11.79 42.05 3.36
4506 4701 8.098220 TGAACCATGACAATTATTATGGATCG 57.902 34.615 14.02 0.00 42.22 3.69
4507 4702 7.174772 TGAACCATGACAATTATTATGGATCGG 59.825 37.037 14.02 0.00 42.22 4.18
4508 4703 6.778821 ACCATGACAATTATTATGGATCGGA 58.221 36.000 14.02 0.00 42.05 4.55
4509 4704 6.881065 ACCATGACAATTATTATGGATCGGAG 59.119 38.462 14.02 0.00 42.05 4.63
4510 4705 6.317140 CCATGACAATTATTATGGATCGGAGG 59.683 42.308 1.27 0.00 42.05 4.30
4511 4706 5.245531 TGACAATTATTATGGATCGGAGGC 58.754 41.667 0.00 0.00 0.00 4.70
4512 4707 5.221823 TGACAATTATTATGGATCGGAGGCA 60.222 40.000 0.00 0.00 0.00 4.75
4513 4708 5.248640 ACAATTATTATGGATCGGAGGCAG 58.751 41.667 0.00 0.00 0.00 4.85
4514 4709 5.221925 ACAATTATTATGGATCGGAGGCAGT 60.222 40.000 0.00 0.00 0.00 4.40
4515 4710 6.013725 ACAATTATTATGGATCGGAGGCAGTA 60.014 38.462 0.00 0.00 0.00 2.74
4516 4711 6.814954 ATTATTATGGATCGGAGGCAGTAT 57.185 37.500 0.00 0.00 0.00 2.12
4519 4714 6.814954 ATTATGGATCGGAGGCAGTATTAT 57.185 37.500 0.00 0.00 0.00 1.28
4548 4743 5.884232 TCTTTGATGCTTTCATATGCTCACT 59.116 36.000 0.00 0.00 33.34 3.41
4549 4744 5.494632 TTGATGCTTTCATATGCTCACTG 57.505 39.130 0.00 0.00 33.34 3.66
4555 4750 4.730035 GCTTTCATATGCTCACTGAGTTGC 60.730 45.833 7.89 1.02 31.39 4.17
4558 4761 1.730501 TATGCTCACTGAGTTGCTGC 58.269 50.000 7.89 0.00 31.39 5.25
4559 4762 0.250597 ATGCTCACTGAGTTGCTGCA 60.251 50.000 7.89 0.00 32.84 4.41
4562 4765 1.944892 GCTCACTGAGTTGCTGCATCT 60.945 52.381 12.74 12.74 31.39 2.90
4575 4778 3.715854 GCATCTTTGCCTGCTCTTG 57.284 52.632 0.00 0.00 43.38 3.02
4576 4779 0.458025 GCATCTTTGCCTGCTCTTGC 60.458 55.000 0.00 0.00 43.38 4.01
4578 4781 1.135373 CATCTTTGCCTGCTCTTGCTG 60.135 52.381 0.00 0.00 40.48 4.41
4581 4784 0.670162 TTTGCCTGCTCTTGCTGTTC 59.330 50.000 0.00 0.00 40.48 3.18
4583 4786 0.179009 TGCCTGCTCTTGCTGTTCTT 60.179 50.000 0.00 0.00 40.48 2.52
4590 4797 1.266175 CTCTTGCTGTTCTTGTGCTGG 59.734 52.381 0.00 0.00 0.00 4.85
4591 4798 1.027357 CTTGCTGTTCTTGTGCTGGT 58.973 50.000 0.00 0.00 0.00 4.00
4604 4811 9.774742 GTTCTTGTGCTGGTTATCTTTAATAAG 57.225 33.333 0.00 0.00 0.00 1.73
4609 4816 9.953565 TGTGCTGGTTATCTTTAATAAGTACTT 57.046 29.630 13.68 13.68 32.98 2.24
4625 4932 6.441088 AAGTACTTCTCTTCTTTCCACCAT 57.559 37.500 1.12 0.00 0.00 3.55
4632 4939 6.485830 TCTCTTCTTTCCACCATAATCGAT 57.514 37.500 0.00 0.00 0.00 3.59
4634 4941 7.338710 TCTCTTCTTTCCACCATAATCGATTT 58.661 34.615 17.19 1.46 0.00 2.17
4643 4950 6.262944 TCCACCATAATCGATTTTTCTGATGG 59.737 38.462 24.26 24.26 38.83 3.51
4644 4951 6.262944 CCACCATAATCGATTTTTCTGATGGA 59.737 38.462 29.32 7.23 36.82 3.41
4645 4952 7.134815 CACCATAATCGATTTTTCTGATGGAC 58.865 38.462 29.32 0.00 36.82 4.02
4647 4954 7.012704 ACCATAATCGATTTTTCTGATGGACTG 59.987 37.037 29.32 12.51 36.82 3.51
4648 4955 5.824904 AATCGATTTTTCTGATGGACTGG 57.175 39.130 4.39 0.00 0.00 4.00
4649 4956 3.009723 TCGATTTTTCTGATGGACTGGC 58.990 45.455 0.00 0.00 0.00 4.85
4650 4957 2.749076 CGATTTTTCTGATGGACTGGCA 59.251 45.455 0.00 0.00 0.00 4.92
4670 4979 4.380233 GGCATATGCAGATGGAATTAGCAC 60.380 45.833 28.07 2.69 44.36 4.40
4858 5170 6.114089 ACTCATGATTGACTTCTTCCATCTG 58.886 40.000 0.00 0.00 29.33 2.90
4948 5260 1.220493 TCATCCCAAGCTAGGCTCCTA 59.780 52.381 0.00 0.00 38.25 2.94
5163 5475 3.181967 CAGCGCGCCTGTGACTAC 61.182 66.667 30.33 0.00 36.79 2.73
5382 5699 7.339466 AGAAATATGCAACTGTAGGGGTAAAAG 59.661 37.037 0.00 0.00 0.00 2.27
5391 5708 8.316214 CAACTGTAGGGGTAAAAGTGAAGTATA 58.684 37.037 0.00 0.00 0.00 1.47
5716 6036 2.536329 CGCTGAAGATGATTCAAGTGCG 60.536 50.000 7.87 7.87 35.45 5.34
5718 6038 3.242349 GCTGAAGATGATTCAAGTGCGAG 60.242 47.826 0.00 0.00 0.00 5.03
5721 6041 2.005451 AGATGATTCAAGTGCGAGTGC 58.995 47.619 0.00 0.00 43.20 4.40
5743 6081 2.031807 CGCCTTCTTCGATCGAGAAGTA 59.968 50.000 31.95 19.07 45.69 2.24
5748 6086 3.607741 TCTTCGATCGAGAAGTACTGGT 58.392 45.455 18.54 0.00 45.69 4.00
5750 6088 3.263489 TCGATCGAGAAGTACTGGTCT 57.737 47.619 15.15 0.00 0.00 3.85
5754 6092 4.331992 CGATCGAGAAGTACTGGTCTGTTA 59.668 45.833 10.26 0.00 0.00 2.41
5770 6108 5.652891 GGTCTGTTAGTCTGATGAGTTCCTA 59.347 44.000 0.00 0.00 0.00 2.94
5771 6109 6.153000 GGTCTGTTAGTCTGATGAGTTCCTAA 59.847 42.308 0.00 0.00 0.00 2.69
5831 6169 1.756172 TGCAGTTTGTGGGGGTGTG 60.756 57.895 0.00 0.00 0.00 3.82
5835 6173 1.074727 CAGTTTGTGGGGGTGTGGATA 59.925 52.381 0.00 0.00 0.00 2.59
5853 6191 5.460419 GTGGATAGTATTCAGAAACGCTCAG 59.540 44.000 0.00 0.00 0.00 3.35
5913 6255 2.292828 AGGGCAGCAGTGTTGTAAAT 57.707 45.000 8.86 0.00 0.00 1.40
5954 6296 5.246656 TGCACATCTGGAAATGGAAAGATTT 59.753 36.000 0.00 0.00 0.00 2.17
5955 6297 5.809051 GCACATCTGGAAATGGAAAGATTTC 59.191 40.000 0.00 0.00 40.31 2.17
5958 6300 6.950041 ACATCTGGAAATGGAAAGATTTCTCA 59.050 34.615 5.37 2.90 40.68 3.27
6003 6345 6.227522 TGTGATTGAGGACGAAAAATGAGTA 58.772 36.000 0.00 0.00 0.00 2.59
6039 6381 8.579850 TGCTGAATTCTACAATTCTTATTGGT 57.420 30.769 7.05 0.00 45.80 3.67
6040 6382 9.679661 TGCTGAATTCTACAATTCTTATTGGTA 57.320 29.630 7.05 0.00 45.80 3.25
6063 6405 3.181493 CGCAGAGATTTGGAAGGAAATGG 60.181 47.826 0.00 0.00 0.00 3.16
6081 6423 1.446272 GTTCCGTCCTTGAGCCTCG 60.446 63.158 0.00 0.00 0.00 4.63
6097 6439 3.008049 AGCCTCGAGGAACTAACATTTGT 59.992 43.478 35.69 0.00 41.55 2.83
6112 6454 3.567164 ACATTTGTCTTCACTGAAGCAGG 59.433 43.478 13.24 10.16 39.29 4.85
6113 6455 2.260844 TTGTCTTCACTGAAGCAGGG 57.739 50.000 13.24 0.00 39.29 4.45
6114 6456 1.423584 TGTCTTCACTGAAGCAGGGA 58.576 50.000 13.24 0.00 42.67 4.20
6212 6832 9.007901 CAAAATTATAAACCCAATCCAAAGCAA 57.992 29.630 0.00 0.00 0.00 3.91
6218 6838 1.068333 CCCAATCCAAAGCAACAGACG 60.068 52.381 0.00 0.00 0.00 4.18
6330 6950 9.604626 GAATTACAAGACTGACTGAAGAAAATG 57.395 33.333 0.00 0.00 0.00 2.32
6367 6987 3.057033 TCGACGAAGAACCCTAGAAAAGG 60.057 47.826 0.00 0.00 46.09 3.11
6480 7101 5.064452 TGTTTTCGCAAATGTTTTCTTGCAT 59.936 32.000 7.48 0.00 46.66 3.96
6491 7112 5.645624 TGTTTTCTTGCATGAAACGAAGAA 58.354 33.333 23.14 8.02 35.91 2.52
6517 7138 0.035725 GGAGTTTCCCCGGTCGAATT 60.036 55.000 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 4.923415 TCTACTCAAGTCATCAGTGAGGA 58.077 43.478 2.74 2.74 42.54 3.71
182 183 6.650120 ACTTTTCAAAGGTCTCAGACTTGTA 58.350 36.000 4.40 0.00 40.31 2.41
377 378 2.342910 AGAGTGCGATTACGACGTTT 57.657 45.000 5.50 0.00 42.66 3.60
414 415 7.313646 CGGTAAATCGGTAAGAGACATCATAT 58.686 38.462 0.00 0.00 0.00 1.78
516 517 6.249911 TCCCAAACCATAATTCATACGGTA 57.750 37.500 0.00 0.00 0.00 4.02
609 610 1.750341 TTCCGACTTGGGTTCGAGCA 61.750 55.000 0.53 0.00 38.76 4.26
749 750 7.803131 AGTTCTACTTTTCTCCCACTTACTTT 58.197 34.615 0.00 0.00 0.00 2.66
815 816 4.985538 AGCACCTCAGGAACATTTTCTTA 58.014 39.130 0.00 0.00 31.71 2.10
837 838 5.307926 TGCACGATAAAATCTCAATGCAA 57.692 34.783 0.00 0.00 38.78 4.08
842 843 9.720667 CTAAATTGATGCACGATAAAATCTCAA 57.279 29.630 0.00 0.00 0.00 3.02
843 844 9.108284 TCTAAATTGATGCACGATAAAATCTCA 57.892 29.630 0.00 0.00 0.00 3.27
846 847 9.882996 TGATCTAAATTGATGCACGATAAAATC 57.117 29.630 0.00 0.00 0.00 2.17
847 848 9.888878 CTGATCTAAATTGATGCACGATAAAAT 57.111 29.630 0.00 0.00 0.00 1.82
860 861 5.191727 TGAAAGGCCCTGATCTAAATTGA 57.808 39.130 0.00 0.00 0.00 2.57
861 862 4.202090 GCTGAAAGGCCCTGATCTAAATTG 60.202 45.833 0.00 0.00 0.00 2.32
1179 1181 1.903860 ACACAGGTAACAATCCGGCTA 59.096 47.619 0.00 0.00 41.41 3.93
1285 1287 0.976641 AGAGCTTGTTCATCACGGGA 59.023 50.000 0.00 0.00 0.00 5.14
1366 1368 0.250513 ATTTGGTCAGTCGAGGCCTC 59.749 55.000 23.79 23.79 0.00 4.70
1396 1398 6.889198 TGAACCATTTCCACCAAAATGTAAA 58.111 32.000 8.15 0.00 42.50 2.01
1414 1416 5.592688 CCCAAACTTAAAGAGACTTGAACCA 59.407 40.000 0.00 0.00 0.00 3.67
1511 1538 6.843752 TCCTTTCTGGGATTAACAGTTAACA 58.156 36.000 7.95 1.82 37.25 2.41
1610 1637 5.354767 TGCACAAATGAGCAAACATTACAA 58.645 33.333 2.98 0.00 38.62 2.41
1621 1648 4.325472 GCTGAACTATTTGCACAAATGAGC 59.675 41.667 16.87 12.03 40.83 4.26
1647 1674 9.683069 TTATTAGACGATCTTTTATTACGGTCC 57.317 33.333 0.00 0.00 0.00 4.46
1809 1836 1.205893 TGCCCAACACAACAAGAAACC 59.794 47.619 0.00 0.00 0.00 3.27
1870 1898 4.342092 CCCTGTCACCAAGAAAGAAACATT 59.658 41.667 0.00 0.00 32.96 2.71
1965 1993 3.569200 GAACCAAGGCGGGGAAGCT 62.569 63.158 4.45 0.00 40.22 3.74
1974 2002 3.365265 CACCTGCGGAACCAAGGC 61.365 66.667 0.00 0.00 0.00 4.35
2069 2097 7.620880 TCTAGCTGAATGGTTAGTATGTTTGT 58.379 34.615 0.00 0.00 0.00 2.83
2070 2098 8.668510 ATCTAGCTGAATGGTTAGTATGTTTG 57.331 34.615 0.00 0.00 0.00 2.93
2228 2256 5.008118 GGGAAAAGCAGAATAGATTTCCTCG 59.992 44.000 13.46 0.00 45.29 4.63
2235 2263 3.788142 TGAGGGGGAAAAGCAGAATAGAT 59.212 43.478 0.00 0.00 0.00 1.98
2238 2266 4.396357 TTTGAGGGGGAAAAGCAGAATA 57.604 40.909 0.00 0.00 0.00 1.75
2244 2272 2.529632 AGTCATTTGAGGGGGAAAAGC 58.470 47.619 0.00 0.00 0.00 3.51
2278 2306 9.325198 GATTTTTCTAAAATGGTTGTGTTTCCT 57.675 29.630 2.37 0.00 0.00 3.36
2289 2317 9.362539 CTGGTCATCAAGATTTTTCTAAAATGG 57.637 33.333 2.37 0.00 0.00 3.16
2473 2501 8.452868 ACAGCTAAATAATGATAATAACCCCCA 58.547 33.333 0.00 0.00 0.00 4.96
2540 2568 6.471233 AGCACACAGAAGAGCACTATAATA 57.529 37.500 0.00 0.00 0.00 0.98
2546 2574 1.967066 ACTAGCACACAGAAGAGCACT 59.033 47.619 0.00 0.00 0.00 4.40
2547 2575 2.447244 ACTAGCACACAGAAGAGCAC 57.553 50.000 0.00 0.00 0.00 4.40
2709 2900 5.835911 AATAATGCTCATCACGAGATTCG 57.164 39.130 0.00 0.00 45.45 3.34
2742 2933 6.003950 AGTGCAGGATAAGCAGTTCTAAAAA 58.996 36.000 0.00 0.00 42.69 1.94
2767 2958 9.530129 CGACTCACATAAGAAAAAGTGATTAAC 57.470 33.333 0.00 0.00 39.92 2.01
2812 3003 6.013725 ACCACTAACACTGAGTGATATTCCAA 60.014 38.462 20.97 0.00 46.01 3.53
2983 3174 7.292356 TCTGCAGTATGGAAAAGGATAATAGGA 59.708 37.037 14.67 0.00 34.45 2.94
3250 3441 4.016444 GGATGTCCAATGTTTTGCCTAGA 58.984 43.478 0.00 0.00 35.64 2.43
3335 3526 2.821969 GTGAGGTGCCATTTTCAGTGAT 59.178 45.455 0.00 0.00 0.00 3.06
3377 3568 2.281484 ACGTCCCGCAATGCTGTT 60.281 55.556 2.94 0.00 0.00 3.16
3408 3599 7.974482 TCTGCAGATCAACAAATATATGGAG 57.026 36.000 13.74 0.00 35.03 3.86
3449 3640 9.630098 ACAAACATAGAATGTCAAATCAACATC 57.370 29.630 0.00 0.00 44.07 3.06
3464 3656 4.887071 AGTGCTGAACCAACAAACATAGAA 59.113 37.500 0.00 0.00 0.00 2.10
3511 3703 5.299949 ACATCGCAGCATATCTTGACATAA 58.700 37.500 0.00 0.00 0.00 1.90
3591 3783 6.128526 GCACATAGAAAGGACAAGTAACTGAC 60.129 42.308 0.00 0.00 0.00 3.51
3593 3785 5.934625 AGCACATAGAAAGGACAAGTAACTG 59.065 40.000 0.00 0.00 0.00 3.16
3602 3794 4.509600 GCATCAGTAGCACATAGAAAGGAC 59.490 45.833 0.00 0.00 0.00 3.85
3612 3804 9.914131 CTAACTATATTAAGCATCAGTAGCACA 57.086 33.333 0.00 0.00 0.00 4.57
3650 3842 5.319043 TGTGAGAAGGGACAAAACCTAAT 57.681 39.130 0.00 0.00 37.35 1.73
3679 3871 4.884668 ACGAAAGGTAAGACATCCTTGA 57.115 40.909 0.00 0.00 42.38 3.02
3779 3971 5.440234 TCTATCCTTCAAGTATGTCTCGC 57.560 43.478 0.00 0.00 0.00 5.03
3809 4001 2.083774 TGACGAAATGATGGCAGTTCC 58.916 47.619 0.00 0.00 44.01 3.62
3816 4008 8.532977 AAATTAAAGGTTTGACGAAATGATGG 57.467 30.769 0.00 0.00 0.00 3.51
3846 4038 9.476202 AAAGCATTTTAAACTTTTCGATAAGCT 57.524 25.926 14.56 0.73 31.62 3.74
3881 4073 5.297547 ACTTGTCCATGTACACTACACTTG 58.702 41.667 0.00 0.00 42.23 3.16
3883 4075 5.773680 ACTACTTGTCCATGTACACTACACT 59.226 40.000 0.00 0.00 42.23 3.55
3884 4076 5.862323 CACTACTTGTCCATGTACACTACAC 59.138 44.000 0.00 0.00 42.23 2.90
3885 4077 5.047590 CCACTACTTGTCCATGTACACTACA 60.048 44.000 0.00 0.00 43.80 2.74
3886 4078 5.047519 ACCACTACTTGTCCATGTACACTAC 60.048 44.000 0.00 0.00 0.00 2.73
3887 4079 5.081728 ACCACTACTTGTCCATGTACACTA 58.918 41.667 0.00 0.00 0.00 2.74
3888 4080 3.901844 ACCACTACTTGTCCATGTACACT 59.098 43.478 0.00 0.00 0.00 3.55
3889 4081 4.267349 ACCACTACTTGTCCATGTACAC 57.733 45.455 0.00 0.00 0.00 2.90
3890 4082 4.967084 AACCACTACTTGTCCATGTACA 57.033 40.909 0.00 0.00 0.00 2.90
3891 4083 6.694447 TCTAAACCACTACTTGTCCATGTAC 58.306 40.000 0.00 0.00 0.00 2.90
3892 4084 6.921486 TCTAAACCACTACTTGTCCATGTA 57.079 37.500 0.00 0.00 0.00 2.29
3893 4085 5.818678 TCTAAACCACTACTTGTCCATGT 57.181 39.130 0.00 0.00 0.00 3.21
3894 4086 6.878923 TCATTCTAAACCACTACTTGTCCATG 59.121 38.462 0.00 0.00 0.00 3.66
3895 4087 7.016153 TCATTCTAAACCACTACTTGTCCAT 57.984 36.000 0.00 0.00 0.00 3.41
3896 4088 6.428083 TCATTCTAAACCACTACTTGTCCA 57.572 37.500 0.00 0.00 0.00 4.02
3897 4089 6.708949 TGTTCATTCTAAACCACTACTTGTCC 59.291 38.462 0.00 0.00 0.00 4.02
3922 4114 7.229506 AGCAAACTCAATTTACTTCTTACAGCT 59.770 33.333 0.00 0.00 0.00 4.24
3923 4115 7.363431 AGCAAACTCAATTTACTTCTTACAGC 58.637 34.615 0.00 0.00 0.00 4.40
3964 4159 5.393243 CCACACATGCATATGAACAACATGA 60.393 40.000 12.92 0.00 40.39 3.07
3969 4164 5.918426 AATCCACACATGCATATGAACAA 57.082 34.783 12.92 0.00 37.73 2.83
3972 4167 7.643569 ACTTAAATCCACACATGCATATGAA 57.356 32.000 12.92 0.00 37.73 2.57
3994 4189 5.348164 GTGTTGTGAGCAAATAACCAAACT 58.652 37.500 0.00 0.00 36.22 2.66
4026 4221 9.035607 CGTAAACTCAAATATATCAGCAGAACT 57.964 33.333 0.00 0.00 0.00 3.01
4030 4225 7.169813 TCAGCGTAAACTCAAATATATCAGCAG 59.830 37.037 0.00 0.00 0.00 4.24
4033 4228 8.817100 TGTTCAGCGTAAACTCAAATATATCAG 58.183 33.333 0.00 0.00 0.00 2.90
4046 4241 3.303791 CCAGGAAGTTGTTCAGCGTAAAC 60.304 47.826 0.00 0.00 33.93 2.01
4052 4247 6.569179 TTTATAACCAGGAAGTTGTTCAGC 57.431 37.500 0.00 0.00 33.93 4.26
4061 4256 8.053355 ACCTACAAGGATTTTATAACCAGGAAG 58.947 37.037 0.00 0.00 37.67 3.46
4067 4262 7.571025 TCCTCACCTACAAGGATTTTATAACC 58.429 38.462 0.00 0.00 37.67 2.85
4075 4270 4.767409 GCTTTTTCCTCACCTACAAGGATT 59.233 41.667 0.00 0.00 41.26 3.01
4115 4310 3.885521 GAGCGCTGGAATGCAGCC 61.886 66.667 18.48 13.25 42.30 4.85
4163 4358 6.546403 TGGTACATACTAAGGATCACTCAGTC 59.454 42.308 0.00 0.00 0.00 3.51
4179 4374 5.401531 TTCAGAACAGAGGTGGTACATAC 57.598 43.478 0.00 0.00 44.52 2.39
4187 4382 7.036220 ACGTCTTATAATTCAGAACAGAGGTG 58.964 38.462 0.00 0.00 0.00 4.00
4188 4383 7.171630 ACGTCTTATAATTCAGAACAGAGGT 57.828 36.000 0.00 0.00 0.00 3.85
4193 4388 8.610248 TCCAAAACGTCTTATAATTCAGAACA 57.390 30.769 0.00 0.00 0.00 3.18
4207 4402 8.621286 GTCCATATTGAAATATCCAAAACGTCT 58.379 33.333 0.00 0.00 29.35 4.18
4220 4415 9.770097 CAGTCTGTATGTAGTCCATATTGAAAT 57.230 33.333 0.00 0.00 38.29 2.17
4221 4416 8.977412 TCAGTCTGTATGTAGTCCATATTGAAA 58.023 33.333 0.00 0.00 38.29 2.69
4222 4417 8.533569 TCAGTCTGTATGTAGTCCATATTGAA 57.466 34.615 0.00 0.00 38.29 2.69
4224 4419 9.770097 ATTTCAGTCTGTATGTAGTCCATATTG 57.230 33.333 0.00 0.00 38.29 1.90
4226 4421 9.147732 TCATTTCAGTCTGTATGTAGTCCATAT 57.852 33.333 13.61 0.00 38.29 1.78
4228 4423 7.124901 ACTCATTTCAGTCTGTATGTAGTCCAT 59.875 37.037 13.61 0.00 37.58 3.41
4232 4427 7.468141 TCACTCATTTCAGTCTGTATGTAGT 57.532 36.000 13.61 12.61 0.00 2.73
4233 4428 7.814587 TGTTCACTCATTTCAGTCTGTATGTAG 59.185 37.037 13.61 12.22 0.00 2.74
4234 4429 7.666623 TGTTCACTCATTTCAGTCTGTATGTA 58.333 34.615 13.61 4.80 0.00 2.29
4236 4431 7.425577 TTGTTCACTCATTTCAGTCTGTATG 57.574 36.000 0.00 5.69 0.00 2.39
4238 4433 6.821160 TGTTTGTTCACTCATTTCAGTCTGTA 59.179 34.615 0.00 0.00 0.00 2.74
4239 4434 5.647658 TGTTTGTTCACTCATTTCAGTCTGT 59.352 36.000 0.00 0.00 0.00 3.41
4240 4435 5.967674 GTGTTTGTTCACTCATTTCAGTCTG 59.032 40.000 0.00 0.00 35.68 3.51
4243 4438 5.415701 AGTGTGTTTGTTCACTCATTTCAGT 59.584 36.000 0.00 0.00 40.28 3.41
4244 4439 5.883661 AGTGTGTTTGTTCACTCATTTCAG 58.116 37.500 0.00 0.00 40.28 3.02
4245 4440 5.895636 AGTGTGTTTGTTCACTCATTTCA 57.104 34.783 0.00 0.00 40.28 2.69
4246 4441 8.745837 CATTTAGTGTGTTTGTTCACTCATTTC 58.254 33.333 1.08 0.00 42.77 2.17
4249 4444 6.208644 GCATTTAGTGTGTTTGTTCACTCAT 58.791 36.000 1.08 0.00 42.77 2.90
4251 4446 4.670621 CGCATTTAGTGTGTTTGTTCACTC 59.329 41.667 1.08 0.00 42.77 3.51
4252 4447 4.597079 CGCATTTAGTGTGTTTGTTCACT 58.403 39.130 0.00 0.00 45.21 3.41
4262 4457 6.074302 GGATGTATACAGACGCATTTAGTGTG 60.074 42.308 11.91 0.00 42.04 3.82
4263 4458 5.983720 GGATGTATACAGACGCATTTAGTGT 59.016 40.000 11.91 0.00 45.36 3.55
4264 4459 5.983118 TGGATGTATACAGACGCATTTAGTG 59.017 40.000 11.91 0.00 0.00 2.74
4265 4460 6.156748 TGGATGTATACAGACGCATTTAGT 57.843 37.500 11.91 0.00 0.00 2.24
4266 4461 7.658179 ATTGGATGTATACAGACGCATTTAG 57.342 36.000 11.91 0.00 0.00 1.85
4267 4462 7.713073 TGAATTGGATGTATACAGACGCATTTA 59.287 33.333 11.91 4.01 0.00 1.40
4268 4463 6.542005 TGAATTGGATGTATACAGACGCATTT 59.458 34.615 11.91 9.86 0.00 2.32
4269 4464 6.054941 TGAATTGGATGTATACAGACGCATT 58.945 36.000 11.91 8.56 0.00 3.56
4270 4465 5.610398 TGAATTGGATGTATACAGACGCAT 58.390 37.500 11.91 0.00 0.00 4.73
4271 4466 5.017294 TGAATTGGATGTATACAGACGCA 57.983 39.130 11.91 5.99 0.00 5.24
4272 4467 5.289595 TCTGAATTGGATGTATACAGACGC 58.710 41.667 11.91 1.01 0.00 5.19
4273 4468 7.770801 TTTCTGAATTGGATGTATACAGACG 57.229 36.000 11.91 0.00 33.64 4.18
4305 4500 9.319143 CCTTCGTTCAGAATTATAAGATGTTCT 57.681 33.333 0.00 0.00 38.34 3.01
4306 4501 8.552034 CCCTTCGTTCAGAATTATAAGATGTTC 58.448 37.037 0.00 0.00 38.34 3.18
4307 4502 8.265055 TCCCTTCGTTCAGAATTATAAGATGTT 58.735 33.333 0.00 0.00 38.34 2.71
4308 4503 7.792032 TCCCTTCGTTCAGAATTATAAGATGT 58.208 34.615 0.00 0.00 38.34 3.06
4309 4504 7.928706 ACTCCCTTCGTTCAGAATTATAAGATG 59.071 37.037 0.00 0.00 38.34 2.90
4310 4505 8.024145 ACTCCCTTCGTTCAGAATTATAAGAT 57.976 34.615 0.00 0.00 38.34 2.40
4313 4508 8.755977 AGTTACTCCCTTCGTTCAGAATTATAA 58.244 33.333 0.00 0.00 38.34 0.98
4315 4510 7.184067 AGTTACTCCCTTCGTTCAGAATTAT 57.816 36.000 0.00 0.00 38.34 1.28
4318 4513 6.793505 ATAGTTACTCCCTTCGTTCAGAAT 57.206 37.500 0.00 0.00 38.34 2.40
4321 4516 8.943909 AATAAATAGTTACTCCCTTCGTTCAG 57.056 34.615 0.00 0.00 0.00 3.02
4322 4517 9.729281 AAAATAAATAGTTACTCCCTTCGTTCA 57.271 29.630 0.00 0.00 0.00 3.18
4326 4521 8.455682 TGCAAAAATAAATAGTTACTCCCTTCG 58.544 33.333 0.00 0.00 0.00 3.79
4328 4523 9.309224 AGTGCAAAAATAAATAGTTACTCCCTT 57.691 29.630 0.00 0.00 0.00 3.95
4395 4590 5.278957 GCAGAATGGTTCAAGGTTGTTATGT 60.279 40.000 0.00 0.00 35.86 2.29
4404 4599 2.094854 GCTTCTGCAGAATGGTTCAAGG 60.095 50.000 28.57 14.77 39.41 3.61
4407 4602 1.074405 AGGCTTCTGCAGAATGGTTCA 59.926 47.619 28.57 5.70 41.91 3.18
4409 4604 3.659183 ATAGGCTTCTGCAGAATGGTT 57.341 42.857 28.57 16.51 41.91 3.67
4480 4675 8.232513 CGATCCATAATAATTGTCATGGTTCAG 58.767 37.037 13.16 5.27 39.21 3.02
4483 4678 7.230747 TCCGATCCATAATAATTGTCATGGTT 58.769 34.615 4.41 0.00 39.21 3.67
4484 4679 6.778821 TCCGATCCATAATAATTGTCATGGT 58.221 36.000 4.41 0.00 39.21 3.55
4485 4680 6.317140 CCTCCGATCCATAATAATTGTCATGG 59.683 42.308 0.00 0.00 39.48 3.66
4486 4681 6.183360 GCCTCCGATCCATAATAATTGTCATG 60.183 42.308 0.00 0.00 0.00 3.07
4487 4682 5.882557 GCCTCCGATCCATAATAATTGTCAT 59.117 40.000 0.00 0.00 0.00 3.06
4489 4684 5.245531 TGCCTCCGATCCATAATAATTGTC 58.754 41.667 0.00 0.00 0.00 3.18
4491 4686 5.248640 ACTGCCTCCGATCCATAATAATTG 58.751 41.667 0.00 0.00 0.00 2.32
4492 4687 5.505181 ACTGCCTCCGATCCATAATAATT 57.495 39.130 0.00 0.00 0.00 1.40
4493 4688 6.814954 ATACTGCCTCCGATCCATAATAAT 57.185 37.500 0.00 0.00 0.00 1.28
4495 4690 7.914427 ATAATACTGCCTCCGATCCATAATA 57.086 36.000 0.00 0.00 0.00 0.98
4496 4691 6.814954 ATAATACTGCCTCCGATCCATAAT 57.185 37.500 0.00 0.00 0.00 1.28
4497 4692 6.620877 AATAATACTGCCTCCGATCCATAA 57.379 37.500 0.00 0.00 0.00 1.90
4498 4693 6.620877 AAATAATACTGCCTCCGATCCATA 57.379 37.500 0.00 0.00 0.00 2.74
4499 4694 5.505181 AAATAATACTGCCTCCGATCCAT 57.495 39.130 0.00 0.00 0.00 3.41
4500 4695 4.974645 AAATAATACTGCCTCCGATCCA 57.025 40.909 0.00 0.00 0.00 3.41
4524 4719 5.884232 AGTGAGCATATGAAAGCATCAAAGA 59.116 36.000 6.97 0.00 42.54 2.52
4558 4761 1.135373 CAGCAAGAGCAGGCAAAGATG 60.135 52.381 0.00 0.00 45.49 2.90
4559 4762 1.174783 CAGCAAGAGCAGGCAAAGAT 58.825 50.000 0.00 0.00 45.49 2.40
4562 4765 0.670162 GAACAGCAAGAGCAGGCAAA 59.330 50.000 0.00 0.00 45.49 3.68
4572 4775 1.027357 ACCAGCACAAGAACAGCAAG 58.973 50.000 0.00 0.00 0.00 4.01
4575 4778 3.077359 AGATAACCAGCACAAGAACAGC 58.923 45.455 0.00 0.00 0.00 4.40
4576 4779 5.695851 AAAGATAACCAGCACAAGAACAG 57.304 39.130 0.00 0.00 0.00 3.16
4578 4781 9.774742 CTTATTAAAGATAACCAGCACAAGAAC 57.225 33.333 0.00 0.00 34.37 3.01
4583 4786 9.953565 AAGTACTTATTAAAGATAACCAGCACA 57.046 29.630 6.26 0.00 36.50 4.57
4604 4811 7.222999 CGATTATGGTGGAAAGAAGAGAAGTAC 59.777 40.741 0.00 0.00 0.00 2.73
4606 4813 6.070767 TCGATTATGGTGGAAAGAAGAGAAGT 60.071 38.462 0.00 0.00 0.00 3.01
4609 4816 5.932619 TCGATTATGGTGGAAAGAAGAGA 57.067 39.130 0.00 0.00 0.00 3.10
4611 4818 7.938140 AAAATCGATTATGGTGGAAAGAAGA 57.062 32.000 11.83 0.00 0.00 2.87
4612 4819 8.462016 AGAAAAATCGATTATGGTGGAAAGAAG 58.538 33.333 11.83 0.00 0.00 2.85
4615 4922 7.761409 TCAGAAAAATCGATTATGGTGGAAAG 58.239 34.615 11.83 0.00 0.00 2.62
4617 4924 7.706159 CATCAGAAAAATCGATTATGGTGGAA 58.294 34.615 11.83 0.00 28.88 3.53
4625 4932 5.296780 GCCAGTCCATCAGAAAAATCGATTA 59.703 40.000 11.83 0.00 0.00 1.75
4632 4939 4.098349 GCATATGCCAGTCCATCAGAAAAA 59.902 41.667 17.26 0.00 34.31 1.94
4634 4941 3.216800 GCATATGCCAGTCCATCAGAAA 58.783 45.455 17.26 0.00 34.31 2.52
4643 4950 2.556144 TCCATCTGCATATGCCAGTC 57.444 50.000 24.54 0.00 41.18 3.51
4644 4951 3.520691 ATTCCATCTGCATATGCCAGT 57.479 42.857 24.54 7.56 41.18 4.00
4645 4952 4.142447 GCTAATTCCATCTGCATATGCCAG 60.142 45.833 24.54 19.84 41.18 4.85
4647 4954 3.760151 TGCTAATTCCATCTGCATATGCC 59.240 43.478 24.54 7.65 41.18 4.40
4648 4955 4.458295 AGTGCTAATTCCATCTGCATATGC 59.542 41.667 21.09 21.09 42.50 3.14
4649 4956 5.619309 GCAGTGCTAATTCCATCTGCATATG 60.619 44.000 8.18 5.12 44.80 1.78
4650 4957 4.458295 GCAGTGCTAATTCCATCTGCATAT 59.542 41.667 8.18 0.00 44.80 1.78
4670 4979 0.322322 ATGGCCCAACACAAATGCAG 59.678 50.000 0.00 0.00 0.00 4.41
4948 5260 0.467844 TGGCAGTCACCACAAAGCAT 60.468 50.000 0.00 0.00 33.75 3.79
5420 5739 6.426328 CAGATCATCCTTTCTTTCGGAATAGG 59.574 42.308 0.00 0.00 35.50 2.57
5427 5746 6.591834 AGTTACACAGATCATCCTTTCTTTCG 59.408 38.462 0.00 0.00 0.00 3.46
5431 5750 7.009179 TCAAGTTACACAGATCATCCTTTCT 57.991 36.000 0.00 0.00 0.00 2.52
5436 5755 7.044181 TGAAGATCAAGTTACACAGATCATCC 58.956 38.462 11.91 4.20 39.39 3.51
5513 5832 1.154263 GTAGCTCGTGCGTTCTCGT 60.154 57.895 3.48 0.00 45.42 4.18
5695 6015 2.536329 CGCACTTGAATCATCTTCAGCG 60.536 50.000 5.93 5.93 35.45 5.18
5716 6036 1.148759 GATCGAAGAAGGCGGCACTC 61.149 60.000 13.08 7.42 43.58 3.51
5718 6038 2.517450 CGATCGAAGAAGGCGGCAC 61.517 63.158 10.26 4.75 43.58 5.01
5721 6041 0.100682 TTCTCGATCGAAGAAGGCGG 59.899 55.000 19.92 4.82 43.58 6.13
5728 6066 3.623960 AGACCAGTACTTCTCGATCGAAG 59.376 47.826 19.92 16.58 44.59 3.79
5743 6081 4.411927 ACTCATCAGACTAACAGACCAGT 58.588 43.478 0.00 0.00 0.00 4.00
5748 6086 7.451877 AGTTTAGGAACTCATCAGACTAACAGA 59.548 37.037 0.00 0.00 42.35 3.41
5750 6088 7.015292 ACAGTTTAGGAACTCATCAGACTAACA 59.985 37.037 0.00 0.00 44.14 2.41
5754 6092 6.183361 ACAACAGTTTAGGAACTCATCAGACT 60.183 38.462 0.00 0.00 44.14 3.24
5786 6124 0.758734 TCAATACCAGCCAGATCCCG 59.241 55.000 0.00 0.00 0.00 5.14
5821 6159 2.775384 TGAATACTATCCACACCCCCAC 59.225 50.000 0.00 0.00 0.00 4.61
5831 6169 5.460419 CACTGAGCGTTTCTGAATACTATCC 59.540 44.000 0.00 0.00 0.00 2.59
5835 6173 4.258702 ACACTGAGCGTTTCTGAATACT 57.741 40.909 0.00 0.00 0.00 2.12
5853 6191 8.458052 TGACAAATCATTCCATGTATACAACAC 58.542 33.333 10.14 0.00 42.09 3.32
5991 6333 5.567138 AAGGCTTGGATACTCATTTTTCG 57.433 39.130 0.00 0.00 37.61 3.46
6018 6360 8.609176 TGCGTACCAATAAGAATTGTAGAATTC 58.391 33.333 15.68 15.68 45.50 2.17
6020 6362 7.985184 TCTGCGTACCAATAAGAATTGTAGAAT 59.015 33.333 0.00 0.00 40.84 2.40
6039 6381 3.973206 TTCCTTCCAAATCTCTGCGTA 57.027 42.857 0.00 0.00 0.00 4.42
6040 6382 2.859165 TTCCTTCCAAATCTCTGCGT 57.141 45.000 0.00 0.00 0.00 5.24
6063 6405 1.446272 CGAGGCTCAAGGACGGAAC 60.446 63.158 15.95 0.00 0.00 3.62
6067 6409 1.595993 TTCCTCGAGGCTCAAGGACG 61.596 60.000 23.66 4.03 38.90 4.79
6073 6415 1.919240 TGTTAGTTCCTCGAGGCTCA 58.081 50.000 27.39 14.63 34.44 4.26
6081 6423 6.706270 TCAGTGAAGACAAATGTTAGTTCCTC 59.294 38.462 0.00 0.00 0.00 3.71
6097 6439 2.329267 TCTTCCCTGCTTCAGTGAAGA 58.671 47.619 32.39 17.79 46.73 2.87
6112 6454 3.068024 TCAATGTGGCTTGTGTTTCTTCC 59.932 43.478 0.00 0.00 0.00 3.46
6113 6455 4.305989 TCAATGTGGCTTGTGTTTCTTC 57.694 40.909 0.00 0.00 0.00 2.87
6114 6456 4.341806 TGATCAATGTGGCTTGTGTTTCTT 59.658 37.500 0.00 0.00 0.00 2.52
6115 6457 3.890756 TGATCAATGTGGCTTGTGTTTCT 59.109 39.130 0.00 0.00 0.00 2.52
6116 6458 3.983344 GTGATCAATGTGGCTTGTGTTTC 59.017 43.478 0.00 0.00 0.00 2.78
6117 6459 3.384146 TGTGATCAATGTGGCTTGTGTTT 59.616 39.130 0.00 0.00 0.00 2.83
6212 6832 1.913262 TGCCCATCTGTCCGTCTGT 60.913 57.895 0.00 0.00 0.00 3.41
6218 6838 2.019984 GAGATTTGTGCCCATCTGTCC 58.980 52.381 0.00 0.00 29.41 4.02
6300 6920 6.641314 TCTTCAGTCAGTCTTGTAATTCGTTC 59.359 38.462 0.00 0.00 0.00 3.95
6367 6987 0.543749 ATGCTGCTACCTCTGGGTTC 59.456 55.000 0.00 0.00 44.73 3.62
6480 7101 0.856641 CCGCGACTTTCTTCGTTTCA 59.143 50.000 8.23 0.00 41.26 2.69
6491 7112 2.346365 GGGGAAACTCCGCGACTT 59.654 61.111 8.23 0.00 39.75 3.01
6517 7138 0.036164 CCACAGATTGTTCCCCGTGA 59.964 55.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.