Multiple sequence alignment - TraesCS2A01G473000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G473000 chr2A 100.000 4210 0 0 857 5066 714328236 714332445 0.000000e+00 7775.0
1 TraesCS2A01G473000 chr2A 100.000 317 0 0 1 317 714327380 714327696 2.030000e-163 586.0
2 TraesCS2A01G473000 chr2A 96.894 161 4 1 76 236 356950042 356949883 8.360000e-68 268.0
3 TraesCS2A01G473000 chr2A 96.914 162 2 3 77 236 527459263 527459423 8.360000e-68 268.0
4 TraesCS2A01G473000 chr2A 85.714 84 12 0 1273 1356 543120707 543120790 6.990000e-14 89.8
5 TraesCS2A01G473000 chr2A 95.745 47 2 0 2694 2740 384891477 384891523 5.440000e-10 76.8
6 TraesCS2A01G473000 chr2D 94.446 3961 129 41 857 4764 576279304 576283226 0.000000e+00 6011.0
7 TraesCS2A01G473000 chr2D 87.343 798 56 17 2992 3773 617726915 617726147 0.000000e+00 872.0
8 TraesCS2A01G473000 chr2D 85.897 78 11 0 1273 1350 405062407 405062484 3.250000e-12 84.2
9 TraesCS2A01G473000 chr2B 91.868 3271 126 52 1486 4674 692460847 692464059 0.000000e+00 4438.0
10 TraesCS2A01G473000 chr2B 93.070 837 31 12 857 1687 692460018 692460833 0.000000e+00 1199.0
11 TraesCS2A01G473000 chr2B 99.342 152 1 0 85 236 238956362 238956513 5.000000e-70 276.0
12 TraesCS2A01G473000 chr2B 96.364 165 3 3 72 234 601198933 601198770 8.360000e-68 268.0
13 TraesCS2A01G473000 chr2B 84.524 84 13 0 1273 1356 479852662 479852745 3.250000e-12 84.2
14 TraesCS2A01G473000 chr2B 92.593 54 3 1 2687 2740 794688301 794688353 5.440000e-10 76.8
15 TraesCS2A01G473000 chr2B 92.593 54 3 1 2687 2740 794797202 794797254 5.440000e-10 76.8
16 TraesCS2A01G473000 chr7B 92.359 301 16 4 4770 5066 104027551 104027254 6.060000e-114 422.0
17 TraesCS2A01G473000 chr7B 86.420 81 9 1 2662 2740 105509176 105509096 2.510000e-13 87.9
18 TraesCS2A01G473000 chr5B 89.423 312 29 4 3465 3773 381076383 381076693 1.710000e-104 390.0
19 TraesCS2A01G473000 chr5B 88.272 324 18 7 3123 3446 302833789 302834092 2.230000e-98 370.0
20 TraesCS2A01G473000 chr5B 87.963 324 19 6 3123 3446 35495523 35495826 1.040000e-96 364.0
21 TraesCS2A01G473000 chr5B 89.754 244 24 1 3530 3773 302834091 302834333 1.370000e-80 311.0
22 TraesCS2A01G473000 chr5B 97.500 40 1 0 2682 2721 348582424 348582463 9.100000e-08 69.4
23 TraesCS2A01G473000 chr6B 88.746 311 28 5 3465 3773 526021364 526021669 1.720000e-99 374.0
24 TraesCS2A01G473000 chr6B 95.238 168 5 3 69 236 511706771 511706607 3.890000e-66 263.0
25 TraesCS2A01G473000 chr6B 74.675 462 90 22 3215 3663 124477271 124476824 4.030000e-41 180.0
26 TraesCS2A01G473000 chr6B 81.905 105 17 2 1262 1364 357125682 357125578 2.510000e-13 87.9
27 TraesCS2A01G473000 chr6B 88.136 59 7 0 2682 2740 185669397 185669339 2.530000e-08 71.3
28 TraesCS2A01G473000 chr3B 88.037 326 16 9 3123 3446 512426198 512426502 1.040000e-96 364.0
29 TraesCS2A01G473000 chr3B 88.211 246 26 2 3530 3773 512426501 512426745 1.780000e-74 291.0
30 TraesCS2A01G473000 chr3B 98.101 158 1 2 80 236 481626706 481626550 1.800000e-69 274.0
31 TraesCS2A01G473000 chr4B 87.908 306 29 5 3471 3773 564128328 564128028 2.240000e-93 353.0
32 TraesCS2A01G473000 chr4B 98.710 155 2 0 82 236 527938883 527938729 5.000000e-70 276.0
33 TraesCS2A01G473000 chr1B 89.754 244 24 1 3530 3773 30436430 30436188 1.370000e-80 311.0
34 TraesCS2A01G473000 chr1B 83.333 324 14 15 3123 3446 30436712 30436429 3.890000e-66 263.0
35 TraesCS2A01G473000 chr1B 91.525 59 5 0 2682 2740 629772933 629772991 1.170000e-11 82.4
36 TraesCS2A01G473000 chr7A 93.720 207 12 1 4860 5066 379033628 379033833 4.930000e-80 309.0
37 TraesCS2A01G473000 chr7A 76.276 333 65 9 3332 3663 387175727 387176046 1.130000e-36 165.0
38 TraesCS2A01G473000 chr4A 98.113 159 2 1 78 236 584344297 584344454 5.000000e-70 276.0
39 TraesCS2A01G473000 chr5A 97.500 160 1 1 90 246 477434626 477434467 2.320000e-68 270.0
40 TraesCS2A01G473000 chr6D 74.786 468 91 22 3209 3663 47260557 47261010 8.660000e-43 185.0
41 TraesCS2A01G473000 chr6D 81.905 105 17 2 1262 1364 234427641 234427537 2.510000e-13 87.9
42 TraesCS2A01G473000 chr6A 77.177 333 63 11 3332 3663 68512261 68511941 1.120000e-41 182.0
43 TraesCS2A01G473000 chr6A 82.857 105 16 2 1262 1364 356209865 356209761 5.400000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G473000 chr2A 714327380 714332445 5065 False 4180.5 7775 100.0000 1 5066 2 chr2A.!!$F4 5065
1 TraesCS2A01G473000 chr2D 576279304 576283226 3922 False 6011.0 6011 94.4460 857 4764 1 chr2D.!!$F2 3907
2 TraesCS2A01G473000 chr2D 617726147 617726915 768 True 872.0 872 87.3430 2992 3773 1 chr2D.!!$R1 781
3 TraesCS2A01G473000 chr2B 692460018 692464059 4041 False 2818.5 4438 92.4690 857 4674 2 chr2B.!!$F5 3817
4 TraesCS2A01G473000 chr5B 302833789 302834333 544 False 340.5 370 89.0130 3123 3773 2 chr5B.!!$F4 650
5 TraesCS2A01G473000 chr3B 512426198 512426745 547 False 327.5 364 88.1240 3123 3773 2 chr3B.!!$F1 650
6 TraesCS2A01G473000 chr1B 30436188 30436712 524 True 287.0 311 86.5435 3123 3773 2 chr1B.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.0 0.00 0.0 38.20 3.49 F
1579 1599 0.179020 TGTGGTTCTGGAGCAGTTGG 60.179 55.0 0.00 0.0 36.22 3.77 F
2276 2508 1.660560 ATGTCGCTGCAATGGCCTTC 61.661 55.0 3.32 0.0 40.13 3.46 F
3973 4264 2.840651 CAACAGGTGAAGTCCCCTATCT 59.159 50.0 0.00 0.0 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 2358 0.459237 CACGAGCTTGCTCTGTAGGG 60.459 60.000 18.75 6.29 0.00 3.53 R
2515 2749 2.283298 ACTGTTGATATGCTGCTTCCG 58.717 47.619 0.00 0.00 0.00 4.30 R
4053 4370 0.034670 GGAGGGCTCACTGCAGAAAT 60.035 55.000 23.35 0.00 45.15 2.17 R
4852 5196 0.031449 CCAAATGTCGCGGTGGTTTT 59.969 50.000 6.13 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.793349 AGTACGTAAACTATCCAACTAGCTG 58.207 40.000 0.00 0.00 0.00 4.24
25 26 4.430908 ACGTAAACTATCCAACTAGCTGC 58.569 43.478 0.00 0.00 0.00 5.25
26 27 4.159879 ACGTAAACTATCCAACTAGCTGCT 59.840 41.667 7.57 7.57 0.00 4.24
27 28 4.504461 CGTAAACTATCCAACTAGCTGCTG 59.496 45.833 13.43 4.99 0.00 4.41
28 29 4.826274 AAACTATCCAACTAGCTGCTGA 57.174 40.909 13.43 0.10 0.00 4.26
29 30 5.365021 AAACTATCCAACTAGCTGCTGAT 57.635 39.130 13.43 8.46 0.00 2.90
30 31 4.333913 ACTATCCAACTAGCTGCTGATG 57.666 45.455 13.43 8.19 0.00 3.07
31 32 3.963374 ACTATCCAACTAGCTGCTGATGA 59.037 43.478 13.43 2.19 0.00 2.92
32 33 4.592351 ACTATCCAACTAGCTGCTGATGAT 59.408 41.667 13.43 9.33 0.00 2.45
33 34 3.189618 TCCAACTAGCTGCTGATGATG 57.810 47.619 13.43 7.32 0.00 3.07
34 35 2.158856 TCCAACTAGCTGCTGATGATGG 60.159 50.000 13.43 15.29 0.00 3.51
35 36 2.421107 CCAACTAGCTGCTGATGATGGT 60.421 50.000 13.43 0.00 0.00 3.55
36 37 3.181462 CCAACTAGCTGCTGATGATGGTA 60.181 47.826 13.43 0.00 0.00 3.25
37 38 4.445453 CAACTAGCTGCTGATGATGGTAA 58.555 43.478 13.43 0.00 0.00 2.85
38 39 4.065321 ACTAGCTGCTGATGATGGTAAC 57.935 45.455 13.43 0.00 0.00 2.50
39 40 3.708631 ACTAGCTGCTGATGATGGTAACT 59.291 43.478 13.43 0.00 37.61 2.24
40 41 3.191078 AGCTGCTGATGATGGTAACTC 57.809 47.619 0.00 0.00 37.61 3.01
41 42 2.770802 AGCTGCTGATGATGGTAACTCT 59.229 45.455 0.00 0.00 37.61 3.24
42 43 3.963374 AGCTGCTGATGATGGTAACTCTA 59.037 43.478 0.00 0.00 37.61 2.43
43 44 4.592351 AGCTGCTGATGATGGTAACTCTAT 59.408 41.667 0.00 0.00 37.61 1.98
44 45 4.689812 GCTGCTGATGATGGTAACTCTATG 59.310 45.833 0.00 0.00 37.61 2.23
45 46 5.510349 GCTGCTGATGATGGTAACTCTATGA 60.510 44.000 0.00 0.00 37.61 2.15
46 47 6.094193 TGCTGATGATGGTAACTCTATGAG 57.906 41.667 0.00 0.00 35.52 2.90
47 48 5.600069 TGCTGATGATGGTAACTCTATGAGT 59.400 40.000 0.00 0.00 45.64 3.41
61 62 6.940739 ACTCTATGAGTTGAGTAATGCAAGT 58.059 36.000 0.00 0.00 40.28 3.16
62 63 7.390027 ACTCTATGAGTTGAGTAATGCAAGTT 58.610 34.615 0.00 0.00 40.28 2.66
63 64 7.880195 ACTCTATGAGTTGAGTAATGCAAGTTT 59.120 33.333 0.00 0.00 40.28 2.66
64 65 8.621532 TCTATGAGTTGAGTAATGCAAGTTTT 57.378 30.769 0.00 0.00 0.00 2.43
65 66 9.066892 TCTATGAGTTGAGTAATGCAAGTTTTT 57.933 29.630 0.00 0.00 0.00 1.94
66 67 9.334693 CTATGAGTTGAGTAATGCAAGTTTTTC 57.665 33.333 0.00 0.00 0.00 2.29
67 68 7.094508 TGAGTTGAGTAATGCAAGTTTTTCA 57.905 32.000 0.00 0.00 0.00 2.69
68 69 7.715657 TGAGTTGAGTAATGCAAGTTTTTCAT 58.284 30.769 0.00 0.00 0.00 2.57
69 70 7.862372 TGAGTTGAGTAATGCAAGTTTTTCATC 59.138 33.333 0.00 0.00 0.00 2.92
70 71 7.147976 AGTTGAGTAATGCAAGTTTTTCATCC 58.852 34.615 0.00 0.00 0.00 3.51
71 72 6.647334 TGAGTAATGCAAGTTTTTCATCCA 57.353 33.333 0.00 0.00 0.00 3.41
72 73 7.048629 TGAGTAATGCAAGTTTTTCATCCAA 57.951 32.000 0.00 0.00 0.00 3.53
73 74 7.495901 TGAGTAATGCAAGTTTTTCATCCAAA 58.504 30.769 0.00 0.00 0.00 3.28
74 75 7.984050 TGAGTAATGCAAGTTTTTCATCCAAAA 59.016 29.630 0.00 0.00 31.73 2.44
75 76 8.369218 AGTAATGCAAGTTTTTCATCCAAAAG 57.631 30.769 0.00 0.00 35.34 2.27
76 77 8.203485 AGTAATGCAAGTTTTTCATCCAAAAGA 58.797 29.630 0.00 0.00 35.34 2.52
77 78 7.862512 AATGCAAGTTTTTCATCCAAAAGAA 57.137 28.000 0.00 0.00 35.34 2.52
78 79 7.862512 ATGCAAGTTTTTCATCCAAAAGAAA 57.137 28.000 0.00 0.00 35.34 2.52
79 80 7.306205 TGCAAGTTTTTCATCCAAAAGAAAG 57.694 32.000 0.00 0.00 35.34 2.62
80 81 7.102346 TGCAAGTTTTTCATCCAAAAGAAAGA 58.898 30.769 0.00 0.00 35.34 2.52
81 82 7.769970 TGCAAGTTTTTCATCCAAAAGAAAGAT 59.230 29.630 0.00 0.00 35.34 2.40
82 83 8.615211 GCAAGTTTTTCATCCAAAAGAAAGATT 58.385 29.630 0.00 0.00 35.34 2.40
83 84 9.925268 CAAGTTTTTCATCCAAAAGAAAGATTG 57.075 29.630 0.00 0.00 35.34 2.67
84 85 9.671279 AAGTTTTTCATCCAAAAGAAAGATTGT 57.329 25.926 0.00 0.00 35.34 2.71
106 107 7.854934 TGTAAGTAACAACAACAACAACAAC 57.145 32.000 0.00 0.00 34.29 3.32
107 108 7.423199 TGTAAGTAACAACAACAACAACAACA 58.577 30.769 0.00 0.00 34.29 3.33
108 109 7.919091 TGTAAGTAACAACAACAACAACAACAA 59.081 29.630 0.00 0.00 34.29 2.83
109 110 7.772332 AAGTAACAACAACAACAACAACAAA 57.228 28.000 0.00 0.00 0.00 2.83
110 111 7.401484 AGTAACAACAACAACAACAACAAAG 57.599 32.000 0.00 0.00 0.00 2.77
111 112 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
112 113 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
113 114 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
114 115 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
115 116 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
116 117 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
117 118 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
118 119 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
119 120 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
120 121 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
121 122 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
122 123 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
123 124 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
124 125 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
125 126 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
126 127 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
127 128 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
128 129 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
129 130 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
130 131 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
131 132 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
140 141 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
141 142 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
142 143 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
143 144 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
144 145 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
145 146 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
146 147 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
147 148 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
148 149 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
149 150 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
150 151 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
151 152 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
166 167 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
167 168 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
168 169 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
169 170 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
170 171 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
171 172 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
172 173 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
173 174 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
174 175 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
175 176 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
176 177 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
177 178 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
185 186 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
186 187 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
187 188 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
188 189 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
189 190 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
190 191 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
191 192 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
192 193 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
193 194 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
194 195 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
195 196 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
196 197 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
197 198 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
198 199 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
199 200 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
200 201 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
201 202 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
202 203 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
203 204 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
204 205 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
205 206 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
206 207 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
207 208 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
208 209 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
209 210 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
210 211 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
211 212 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
212 213 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
213 214 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
214 215 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
215 216 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
216 217 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
217 218 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
218 219 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
220 221 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
221 222 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
222 223 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
223 224 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
224 225 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
225 226 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
226 227 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
227 228 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
228 229 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
229 230 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
230 231 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
231 232 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
232 233 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
233 234 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
234 235 3.133721 CCTGTCCATAGCTAGCTCTTTGT 59.866 47.826 23.26 0.00 0.00 2.83
235 236 4.367450 CTGTCCATAGCTAGCTCTTTGTC 58.633 47.826 23.26 12.44 0.00 3.18
236 237 3.133003 TGTCCATAGCTAGCTCTTTGTCC 59.867 47.826 23.26 10.15 0.00 4.02
237 238 2.700897 TCCATAGCTAGCTCTTTGTCCC 59.299 50.000 23.26 0.00 0.00 4.46
238 239 2.435805 CCATAGCTAGCTCTTTGTCCCA 59.564 50.000 23.26 0.00 0.00 4.37
239 240 3.118261 CCATAGCTAGCTCTTTGTCCCAA 60.118 47.826 23.26 0.00 0.00 4.12
240 241 4.517285 CATAGCTAGCTCTTTGTCCCAAA 58.483 43.478 23.26 0.00 0.00 3.28
241 242 3.508845 AGCTAGCTCTTTGTCCCAAAA 57.491 42.857 12.68 0.00 0.00 2.44
242 243 3.416156 AGCTAGCTCTTTGTCCCAAAAG 58.584 45.455 12.68 0.00 38.31 2.27
243 244 3.073062 AGCTAGCTCTTTGTCCCAAAAGA 59.927 43.478 12.68 0.00 42.47 2.52
244 245 3.821033 GCTAGCTCTTTGTCCCAAAAGAA 59.179 43.478 7.70 0.00 43.67 2.52
245 246 4.278419 GCTAGCTCTTTGTCCCAAAAGAAA 59.722 41.667 7.70 0.00 43.67 2.52
246 247 4.926140 AGCTCTTTGTCCCAAAAGAAAG 57.074 40.909 1.48 0.00 43.67 2.62
247 248 4.536765 AGCTCTTTGTCCCAAAAGAAAGA 58.463 39.130 0.00 0.00 43.67 2.52
248 249 5.143369 AGCTCTTTGTCCCAAAAGAAAGAT 58.857 37.500 0.00 0.00 43.67 2.40
249 250 5.600069 AGCTCTTTGTCCCAAAAGAAAGATT 59.400 36.000 0.00 0.00 43.67 2.40
250 251 5.693555 GCTCTTTGTCCCAAAAGAAAGATTG 59.306 40.000 0.00 0.00 43.67 2.67
251 252 6.683861 GCTCTTTGTCCCAAAAGAAAGATTGT 60.684 38.462 0.00 0.00 43.67 2.71
252 253 7.470009 GCTCTTTGTCCCAAAAGAAAGATTGTA 60.470 37.037 0.00 0.00 43.67 2.41
253 254 8.299990 TCTTTGTCCCAAAAGAAAGATTGTAA 57.700 30.769 0.00 0.00 41.92 2.41
254 255 8.413229 TCTTTGTCCCAAAAGAAAGATTGTAAG 58.587 33.333 0.00 0.00 41.92 2.34
255 256 7.654022 TTGTCCCAAAAGAAAGATTGTAAGT 57.346 32.000 0.00 0.00 0.00 2.24
256 257 8.754991 TTGTCCCAAAAGAAAGATTGTAAGTA 57.245 30.769 0.00 0.00 0.00 2.24
257 258 8.934023 TGTCCCAAAAGAAAGATTGTAAGTAT 57.066 30.769 0.00 0.00 0.00 2.12
258 259 9.362151 TGTCCCAAAAGAAAGATTGTAAGTATT 57.638 29.630 0.00 0.00 0.00 1.89
261 262 9.341899 CCCAAAAGAAAGATTGTAAGTATTTCG 57.658 33.333 0.00 0.00 35.53 3.46
953 956 3.756783 CTCCCGTCCCTCTCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
954 957 3.742248 CTCCCGTCCCTCTCCCCTC 62.742 73.684 0.00 0.00 0.00 4.30
955 958 4.862823 CCCGTCCCTCTCCCCTCC 62.863 77.778 0.00 0.00 0.00 4.30
956 959 4.862823 CCGTCCCTCTCCCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
957 960 4.862823 CGTCCCTCTCCCCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
1412 1421 3.316253 GCTCTGATGCGAGATTTGTTC 57.684 47.619 0.00 0.00 32.74 3.18
1437 1446 1.825622 GGCTTGCCCTAGTGGATGC 60.826 63.158 0.00 0.00 35.39 3.91
1439 1448 1.379642 GCTTGCCCTAGTGGATGCAC 61.380 60.000 9.70 9.70 35.39 4.57
1440 1449 1.078497 TTGCCCTAGTGGATGCACG 60.078 57.895 12.02 0.00 35.39 5.34
1501 1511 1.204704 TGTGATGGTAGAACTGCGAGG 59.795 52.381 0.00 0.00 0.00 4.63
1513 1523 1.270147 ACTGCGAGGCGAGTTACTTTT 60.270 47.619 0.00 0.00 0.00 2.27
1515 1525 0.720027 GCGAGGCGAGTTACTTTTCC 59.280 55.000 0.00 0.00 0.00 3.13
1519 1529 0.794473 GGCGAGTTACTTTTCCGTGG 59.206 55.000 0.00 0.00 0.00 4.94
1524 1534 4.569564 GCGAGTTACTTTTCCGTGGATTAT 59.430 41.667 0.00 0.00 0.00 1.28
1526 1536 5.579511 CGAGTTACTTTTCCGTGGATTATGT 59.420 40.000 0.00 0.00 0.00 2.29
1530 1540 7.333672 AGTTACTTTTCCGTGGATTATGTCTTC 59.666 37.037 0.00 0.00 0.00 2.87
1531 1541 4.630069 ACTTTTCCGTGGATTATGTCTTCG 59.370 41.667 0.00 0.00 0.00 3.79
1533 1543 3.431922 TCCGTGGATTATGTCTTCGTC 57.568 47.619 0.00 0.00 0.00 4.20
1543 1554 2.526304 TGTCTTCGTCACAGGGAAAG 57.474 50.000 0.00 0.00 0.00 2.62
1579 1599 0.179020 TGTGGTTCTGGAGCAGTTGG 60.179 55.000 0.00 0.00 36.22 3.77
1678 1703 8.589335 TCTCTAGTTAACTGATGTGTTTGTTC 57.411 34.615 18.56 0.00 0.00 3.18
1733 1962 2.913777 CATGTTCTGCAGACCATGTG 57.086 50.000 34.14 19.70 39.28 3.21
1734 1963 2.156917 CATGTTCTGCAGACCATGTGT 58.843 47.619 34.14 11.89 39.28 3.72
1790 2022 6.215121 TGTTAATTTGCAGTTCCAATCTGTG 58.785 36.000 0.00 0.00 35.60 3.66
2099 2331 4.930963 ACAAGATGACAATGCGTTCAAAA 58.069 34.783 0.00 0.00 0.00 2.44
2126 2358 2.494073 TGGGTTTGTGAAGTTTGGTGAC 59.506 45.455 0.00 0.00 0.00 3.67
2222 2454 4.217118 CCAGCAGCAAATAGAAAGACAACT 59.783 41.667 0.00 0.00 0.00 3.16
2273 2505 2.103538 CATGTCGCTGCAATGGCC 59.896 61.111 0.00 0.00 40.13 5.36
2276 2508 1.660560 ATGTCGCTGCAATGGCCTTC 61.661 55.000 3.32 0.00 40.13 3.46
2315 2549 6.932356 ACATTTACTTCTCATGCATACCTG 57.068 37.500 0.00 0.00 0.00 4.00
2387 2621 7.015226 TCTACTTGTTTGTGTCTGAACAATG 57.985 36.000 2.58 1.28 42.76 2.82
2599 2835 9.643693 CATTTCTTGTTTAAATCAGTTATGCCT 57.356 29.630 0.00 0.00 0.00 4.75
2898 3135 3.641436 TCACCAGAGTTTAGCAGTTGAGA 59.359 43.478 0.00 0.00 0.00 3.27
2944 3181 6.433847 TTGAGAGTTAAACTTCCCATCTCA 57.566 37.500 0.00 0.00 39.77 3.27
3467 3748 5.390991 GCTTTGTTCAGTATGCTAACAGGTC 60.391 44.000 6.17 0.00 34.80 3.85
3542 3827 9.844790 GAAGTACTTCCTTCTAAGTTACTCTTC 57.155 37.037 22.74 0.00 40.20 2.87
3706 3997 7.551585 ACTTCTATCCTGTCTTGAGTTGTATG 58.448 38.462 0.00 0.00 0.00 2.39
3965 4256 4.456806 ACCGCAACAGGTGAAGTC 57.543 55.556 0.00 0.00 44.07 3.01
3973 4264 2.840651 CAACAGGTGAAGTCCCCTATCT 59.159 50.000 0.00 0.00 0.00 1.98
4053 4370 4.705023 GCCTGGCTAATCTAAAACTTTCCA 59.295 41.667 12.43 0.00 0.00 3.53
4205 4526 3.372566 CCCCATGGCAAGGTCTATTGTTA 60.373 47.826 6.09 0.00 32.56 2.41
4248 4569 4.681978 AGCTGTTGTCCGTCCCGC 62.682 66.667 0.00 0.00 0.00 6.13
4302 4623 2.719774 GCTTTGTTTCGCCGCATGC 61.720 57.895 7.91 7.91 0.00 4.06
4324 4645 4.569564 GCCCTTGTCTACTGTTATTTACCG 59.430 45.833 0.00 0.00 0.00 4.02
4415 4746 4.081198 TGTTGCTTTGTGGTTTGGATTCTT 60.081 37.500 0.00 0.00 0.00 2.52
4417 4748 3.069443 TGCTTTGTGGTTTGGATTCTTCC 59.931 43.478 0.00 0.00 42.94 3.46
4433 4764 8.776119 TGGATTCTTCCTTTTATCAGAGAAGAT 58.224 33.333 0.00 0.00 41.73 2.40
4467 4803 0.038166 TTTGGTCTGGTGGCCTGATC 59.962 55.000 3.32 0.00 34.19 2.92
4469 4805 2.187946 GTCTGGTGGCCTGATCGG 59.812 66.667 3.32 0.00 34.19 4.18
4502 4838 1.077285 CAGATCACAGGGCATGGCA 60.077 57.895 22.06 0.00 0.00 4.92
4554 4890 8.144155 TCGTTTGATAGTGTTTGTTTCATACA 57.856 30.769 0.00 0.00 34.12 2.29
4555 4891 8.279800 TCGTTTGATAGTGTTTGTTTCATACAG 58.720 33.333 0.00 0.00 38.19 2.74
4556 4892 8.067784 CGTTTGATAGTGTTTGTTTCATACAGT 58.932 33.333 6.10 6.10 38.19 3.55
4585 4923 5.649782 AGAATGGTTTGATTAGCACTTGG 57.350 39.130 0.00 0.00 0.00 3.61
4615 4959 6.494842 CCGTGGATTCGTCAATTATTTTGAT 58.505 36.000 0.00 0.00 0.00 2.57
4619 4963 8.184192 GTGGATTCGTCAATTATTTTGATGTCT 58.816 33.333 7.26 0.00 36.92 3.41
4636 4980 5.918576 TGATGTCTTTGTAGTCGTAGTTGTG 59.081 40.000 0.00 0.00 0.00 3.33
4656 5000 3.888930 GTGATCTCCCTTTTGTTTGGTGA 59.111 43.478 0.00 0.00 0.00 4.02
4674 5018 8.739972 GTTTGGTGACATTTTGGTTCTATCTAT 58.260 33.333 0.00 0.00 42.32 1.98
4742 5086 2.719426 GCAAGAGCAGAGCATTTTGT 57.281 45.000 0.00 0.00 41.58 2.83
4764 5108 8.488308 TTGTTTCTACTTTCTACTACTCCCTT 57.512 34.615 0.00 0.00 0.00 3.95
4765 5109 7.893658 TGTTTCTACTTTCTACTACTCCCTTG 58.106 38.462 0.00 0.00 0.00 3.61
4766 5110 7.039223 TGTTTCTACTTTCTACTACTCCCTTGG 60.039 40.741 0.00 0.00 0.00 3.61
4767 5111 6.150034 TCTACTTTCTACTACTCCCTTGGT 57.850 41.667 0.00 0.00 0.00 3.67
4768 5112 6.186234 TCTACTTTCTACTACTCCCTTGGTC 58.814 44.000 0.00 0.00 0.00 4.02
4769 5113 3.762823 ACTTTCTACTACTCCCTTGGTCG 59.237 47.826 0.00 0.00 0.00 4.79
4770 5114 2.431954 TCTACTACTCCCTTGGTCGG 57.568 55.000 0.00 0.00 0.00 4.79
4771 5115 0.745468 CTACTACTCCCTTGGTCGGC 59.255 60.000 0.00 0.00 0.00 5.54
4772 5116 0.333993 TACTACTCCCTTGGTCGGCT 59.666 55.000 0.00 0.00 0.00 5.52
4773 5117 0.333993 ACTACTCCCTTGGTCGGCTA 59.666 55.000 0.00 0.00 0.00 3.93
4774 5118 1.033574 CTACTCCCTTGGTCGGCTAG 58.966 60.000 0.00 0.00 0.00 3.42
4775 5119 0.333993 TACTCCCTTGGTCGGCTAGT 59.666 55.000 0.00 0.00 0.00 2.57
4776 5120 0.544595 ACTCCCTTGGTCGGCTAGTT 60.545 55.000 0.00 0.00 0.00 2.24
4777 5121 0.613777 CTCCCTTGGTCGGCTAGTTT 59.386 55.000 0.00 0.00 0.00 2.66
4778 5122 0.323629 TCCCTTGGTCGGCTAGTTTG 59.676 55.000 0.00 0.00 0.00 2.93
4779 5123 0.676782 CCCTTGGTCGGCTAGTTTGG 60.677 60.000 0.00 0.00 0.00 3.28
4780 5124 0.036306 CCTTGGTCGGCTAGTTTGGT 59.964 55.000 0.00 0.00 0.00 3.67
4781 5125 1.276989 CCTTGGTCGGCTAGTTTGGTA 59.723 52.381 0.00 0.00 0.00 3.25
4782 5126 2.618053 CTTGGTCGGCTAGTTTGGTAG 58.382 52.381 0.00 0.00 0.00 3.18
4783 5127 0.248289 TGGTCGGCTAGTTTGGTAGC 59.752 55.000 0.00 0.00 44.14 3.58
4789 5133 2.762535 GCTAGTTTGGTAGCCTGTGA 57.237 50.000 0.00 0.00 39.74 3.58
4790 5134 3.268023 GCTAGTTTGGTAGCCTGTGAT 57.732 47.619 0.00 0.00 39.74 3.06
4791 5135 3.198872 GCTAGTTTGGTAGCCTGTGATC 58.801 50.000 0.00 0.00 39.74 2.92
4792 5136 2.789409 AGTTTGGTAGCCTGTGATCC 57.211 50.000 0.00 0.00 0.00 3.36
4793 5137 1.282157 AGTTTGGTAGCCTGTGATCCC 59.718 52.381 0.00 0.00 0.00 3.85
4794 5138 1.004277 GTTTGGTAGCCTGTGATCCCA 59.996 52.381 0.00 0.00 0.00 4.37
4795 5139 0.911769 TTGGTAGCCTGTGATCCCAG 59.088 55.000 0.00 0.00 0.00 4.45
4816 5160 1.460504 GGAAGATCCCCGTCAAAACC 58.539 55.000 0.00 0.00 0.00 3.27
4817 5161 1.460504 GAAGATCCCCGTCAAAACCC 58.539 55.000 0.00 0.00 0.00 4.11
4818 5162 0.774908 AAGATCCCCGTCAAAACCCA 59.225 50.000 0.00 0.00 0.00 4.51
4819 5163 0.328258 AGATCCCCGTCAAAACCCAG 59.672 55.000 0.00 0.00 0.00 4.45
4820 5164 0.679960 GATCCCCGTCAAAACCCAGG 60.680 60.000 0.00 0.00 0.00 4.45
4821 5165 2.150014 ATCCCCGTCAAAACCCAGGG 62.150 60.000 2.85 2.85 41.68 4.45
4822 5166 2.989253 CCCGTCAAAACCCAGGGC 60.989 66.667 4.91 0.00 35.09 5.19
4823 5167 2.203422 CCGTCAAAACCCAGGGCA 60.203 61.111 4.91 0.00 0.00 5.36
4824 5168 2.561037 CCGTCAAAACCCAGGGCAC 61.561 63.158 4.91 0.00 0.00 5.01
4825 5169 1.826054 CGTCAAAACCCAGGGCACA 60.826 57.895 4.91 0.00 0.00 4.57
4826 5170 1.178534 CGTCAAAACCCAGGGCACAT 61.179 55.000 4.91 0.00 0.00 3.21
4827 5171 1.884497 CGTCAAAACCCAGGGCACATA 60.884 52.381 4.91 0.00 0.00 2.29
4828 5172 1.818674 GTCAAAACCCAGGGCACATAG 59.181 52.381 4.91 0.00 0.00 2.23
4829 5173 0.532115 CAAAACCCAGGGCACATAGC 59.468 55.000 4.91 0.00 44.65 2.97
4855 5199 2.629210 CGAACTCGCCGTGCAAAA 59.371 55.556 0.00 0.00 0.00 2.44
4856 5200 1.721133 CGAACTCGCCGTGCAAAAC 60.721 57.895 0.00 0.00 0.00 2.43
4857 5201 1.370051 GAACTCGCCGTGCAAAACC 60.370 57.895 0.00 0.00 0.00 3.27
4858 5202 2.054140 GAACTCGCCGTGCAAAACCA 62.054 55.000 0.00 0.00 0.00 3.67
4859 5203 2.051345 CTCGCCGTGCAAAACCAC 60.051 61.111 0.00 0.00 0.00 4.16
4860 5204 3.536498 CTCGCCGTGCAAAACCACC 62.536 63.158 0.00 0.00 32.10 4.61
4861 5205 4.973360 CGCCGTGCAAAACCACCG 62.973 66.667 0.00 0.00 32.10 4.94
4863 5207 4.973360 CCGTGCAAAACCACCGCG 62.973 66.667 0.00 0.00 32.10 6.46
4864 5208 3.943034 CGTGCAAAACCACCGCGA 61.943 61.111 8.23 0.00 34.71 5.87
4865 5209 2.353030 GTGCAAAACCACCGCGAC 60.353 61.111 8.23 0.00 0.00 5.19
4866 5210 2.824489 TGCAAAACCACCGCGACA 60.824 55.556 8.23 0.00 0.00 4.35
4867 5211 2.190170 TGCAAAACCACCGCGACAT 61.190 52.632 8.23 0.00 0.00 3.06
4868 5212 1.007849 GCAAAACCACCGCGACATT 60.008 52.632 8.23 0.00 0.00 2.71
4869 5213 0.596341 GCAAAACCACCGCGACATTT 60.596 50.000 8.23 0.00 0.00 2.32
4870 5214 1.127701 CAAAACCACCGCGACATTTG 58.872 50.000 8.23 7.98 0.00 2.32
4871 5215 0.031449 AAAACCACCGCGACATTTGG 59.969 50.000 8.23 8.41 35.06 3.28
4872 5216 1.104577 AAACCACCGCGACATTTGGT 61.105 50.000 8.23 9.11 44.52 3.67
4873 5217 1.512156 AACCACCGCGACATTTGGTC 61.512 55.000 8.23 0.00 41.68 4.02
4874 5218 1.671054 CCACCGCGACATTTGGTCT 60.671 57.895 8.23 0.00 44.68 3.85
4875 5219 1.497278 CACCGCGACATTTGGTCTG 59.503 57.895 8.23 0.00 44.68 3.51
4876 5220 2.325082 ACCGCGACATTTGGTCTGC 61.325 57.895 8.23 0.00 44.68 4.26
4877 5221 2.034879 CCGCGACATTTGGTCTGCT 61.035 57.895 8.23 0.00 44.68 4.24
4878 5222 1.421485 CGCGACATTTGGTCTGCTC 59.579 57.895 0.00 0.00 44.68 4.26
4879 5223 1.421485 GCGACATTTGGTCTGCTCG 59.579 57.895 0.00 0.00 44.68 5.03
4880 5224 1.421485 CGACATTTGGTCTGCTCGC 59.579 57.895 0.00 0.00 44.68 5.03
4881 5225 1.016130 CGACATTTGGTCTGCTCGCT 61.016 55.000 0.00 0.00 44.68 4.93
4882 5226 1.160137 GACATTTGGTCTGCTCGCTT 58.840 50.000 0.00 0.00 43.46 4.68
4883 5227 0.877071 ACATTTGGTCTGCTCGCTTG 59.123 50.000 0.00 0.00 0.00 4.01
4884 5228 0.455633 CATTTGGTCTGCTCGCTTGC 60.456 55.000 0.00 0.00 0.00 4.01
4885 5229 0.607489 ATTTGGTCTGCTCGCTTGCT 60.607 50.000 0.00 0.00 0.00 3.91
4886 5230 1.509644 TTTGGTCTGCTCGCTTGCTG 61.510 55.000 0.00 0.00 0.00 4.41
4887 5231 3.123620 GGTCTGCTCGCTTGCTGG 61.124 66.667 5.24 0.00 33.58 4.85
4888 5232 3.123620 GTCTGCTCGCTTGCTGGG 61.124 66.667 5.24 0.00 33.58 4.45
4889 5233 3.313524 TCTGCTCGCTTGCTGGGA 61.314 61.111 5.24 0.00 36.19 4.37
4890 5234 2.124819 CTGCTCGCTTGCTGGGAT 60.125 61.111 0.00 0.00 37.01 3.85
4891 5235 1.144716 CTGCTCGCTTGCTGGGATA 59.855 57.895 0.00 0.00 37.01 2.59
4892 5236 0.250209 CTGCTCGCTTGCTGGGATAT 60.250 55.000 0.00 0.00 37.01 1.63
4893 5237 0.181114 TGCTCGCTTGCTGGGATATT 59.819 50.000 0.00 0.00 37.01 1.28
4894 5238 0.871057 GCTCGCTTGCTGGGATATTC 59.129 55.000 0.00 0.00 37.01 1.75
4895 5239 1.542108 GCTCGCTTGCTGGGATATTCT 60.542 52.381 0.00 0.00 37.01 2.40
4896 5240 2.411904 CTCGCTTGCTGGGATATTCTC 58.588 52.381 0.00 0.00 37.01 2.87
4897 5241 1.070758 TCGCTTGCTGGGATATTCTCC 59.929 52.381 0.00 0.00 44.11 3.71
4907 5251 2.200955 GGATATTCTCCCCTGATCCCC 58.799 57.143 0.00 0.00 38.19 4.81
4908 5252 2.226013 GGATATTCTCCCCTGATCCCCT 60.226 54.545 0.00 0.00 38.19 4.79
4909 5253 3.536287 GATATTCTCCCCTGATCCCCTT 58.464 50.000 0.00 0.00 0.00 3.95
4910 5254 1.826447 ATTCTCCCCTGATCCCCTTC 58.174 55.000 0.00 0.00 0.00 3.46
4911 5255 0.327576 TTCTCCCCTGATCCCCTTCC 60.328 60.000 0.00 0.00 0.00 3.46
4912 5256 1.238896 TCTCCCCTGATCCCCTTCCT 61.239 60.000 0.00 0.00 0.00 3.36
4913 5257 0.327964 CTCCCCTGATCCCCTTCCTT 60.328 60.000 0.00 0.00 0.00 3.36
4914 5258 0.123266 TCCCCTGATCCCCTTCCTTT 59.877 55.000 0.00 0.00 0.00 3.11
4915 5259 0.553333 CCCCTGATCCCCTTCCTTTC 59.447 60.000 0.00 0.00 0.00 2.62
4916 5260 0.553333 CCCTGATCCCCTTCCTTTCC 59.447 60.000 0.00 0.00 0.00 3.13
4917 5261 0.553333 CCTGATCCCCTTCCTTTCCC 59.447 60.000 0.00 0.00 0.00 3.97
4918 5262 1.601248 CTGATCCCCTTCCTTTCCCT 58.399 55.000 0.00 0.00 0.00 4.20
4919 5263 1.213926 CTGATCCCCTTCCTTTCCCTG 59.786 57.143 0.00 0.00 0.00 4.45
4920 5264 0.553333 GATCCCCTTCCTTTCCCTGG 59.447 60.000 0.00 0.00 0.00 4.45
4921 5265 0.926220 ATCCCCTTCCTTTCCCTGGG 60.926 60.000 6.33 6.33 37.68 4.45
4922 5266 1.543896 CCCCTTCCTTTCCCTGGGA 60.544 63.158 12.53 12.53 40.23 4.37
4923 5267 1.575447 CCCCTTCCTTTCCCTGGGAG 61.575 65.000 16.38 5.20 40.23 4.30
4924 5268 0.550147 CCCTTCCTTTCCCTGGGAGA 60.550 60.000 16.38 10.96 40.23 3.71
4925 5269 0.915364 CCTTCCTTTCCCTGGGAGAG 59.085 60.000 23.16 23.16 34.21 3.20
4926 5270 1.555765 CCTTCCTTTCCCTGGGAGAGA 60.556 57.143 29.71 18.37 36.19 3.10
4927 5271 2.269940 CTTCCTTTCCCTGGGAGAGAA 58.730 52.381 29.71 23.11 36.19 2.87
4928 5272 2.433444 TCCTTTCCCTGGGAGAGAAA 57.567 50.000 29.71 16.85 36.19 2.52
4929 5273 2.713595 TCCTTTCCCTGGGAGAGAAAA 58.286 47.619 29.71 14.54 36.19 2.29
4930 5274 2.375509 TCCTTTCCCTGGGAGAGAAAAC 59.624 50.000 29.71 0.00 36.19 2.43
4931 5275 2.555448 CCTTTCCCTGGGAGAGAAAACC 60.555 54.545 29.71 0.00 36.19 3.27
4932 5276 1.827792 TTCCCTGGGAGAGAAAACCA 58.172 50.000 16.38 0.00 31.21 3.67
4933 5277 2.059756 TCCCTGGGAGAGAAAACCAT 57.940 50.000 12.53 0.00 33.07 3.55
4934 5278 1.635487 TCCCTGGGAGAGAAAACCATG 59.365 52.381 12.53 0.00 33.07 3.66
4935 5279 1.467920 CCTGGGAGAGAAAACCATGC 58.532 55.000 0.00 0.00 33.07 4.06
4936 5280 1.467920 CTGGGAGAGAAAACCATGCC 58.532 55.000 0.00 0.00 33.07 4.40
4937 5281 1.005215 CTGGGAGAGAAAACCATGCCT 59.995 52.381 0.00 0.00 33.07 4.75
4938 5282 2.239654 CTGGGAGAGAAAACCATGCCTA 59.760 50.000 0.00 0.00 33.07 3.93
4939 5283 2.852449 TGGGAGAGAAAACCATGCCTAT 59.148 45.455 0.00 0.00 0.00 2.57
4940 5284 4.044308 TGGGAGAGAAAACCATGCCTATA 58.956 43.478 0.00 0.00 0.00 1.31
4941 5285 4.665009 TGGGAGAGAAAACCATGCCTATAT 59.335 41.667 0.00 0.00 0.00 0.86
4942 5286 5.849475 TGGGAGAGAAAACCATGCCTATATA 59.151 40.000 0.00 0.00 0.00 0.86
4943 5287 6.505344 TGGGAGAGAAAACCATGCCTATATAT 59.495 38.462 0.00 0.00 0.00 0.86
4944 5288 6.825721 GGGAGAGAAAACCATGCCTATATATG 59.174 42.308 0.00 0.00 0.00 1.78
4945 5289 7.398024 GGAGAGAAAACCATGCCTATATATGT 58.602 38.462 0.00 0.00 0.00 2.29
4946 5290 7.550906 GGAGAGAAAACCATGCCTATATATGTC 59.449 40.741 0.00 0.00 0.00 3.06
4947 5291 7.099764 AGAGAAAACCATGCCTATATATGTCG 58.900 38.462 0.00 0.00 0.00 4.35
4948 5292 6.173339 AGAAAACCATGCCTATATATGTCGG 58.827 40.000 0.00 0.00 0.00 4.79
4949 5293 4.487714 AACCATGCCTATATATGTCGGG 57.512 45.455 0.00 0.00 0.00 5.14
4950 5294 2.771943 ACCATGCCTATATATGTCGGGG 59.228 50.000 0.00 0.00 0.00 5.73
4951 5295 3.038280 CCATGCCTATATATGTCGGGGA 58.962 50.000 0.00 0.00 0.00 4.81
4952 5296 3.070159 CCATGCCTATATATGTCGGGGAG 59.930 52.174 0.00 0.00 0.00 4.30
4953 5297 3.750501 TGCCTATATATGTCGGGGAGA 57.249 47.619 0.00 0.00 0.00 3.71
4954 5298 4.055710 TGCCTATATATGTCGGGGAGAA 57.944 45.455 0.00 0.00 0.00 2.87
4955 5299 4.422057 TGCCTATATATGTCGGGGAGAAA 58.578 43.478 0.00 0.00 0.00 2.52
4956 5300 4.841813 TGCCTATATATGTCGGGGAGAAAA 59.158 41.667 0.00 0.00 0.00 2.29
4957 5301 5.046591 TGCCTATATATGTCGGGGAGAAAAG 60.047 44.000 0.00 0.00 0.00 2.27
4958 5302 5.420409 CCTATATATGTCGGGGAGAAAAGC 58.580 45.833 0.00 0.00 0.00 3.51
4959 5303 2.640316 ATATGTCGGGGAGAAAAGCC 57.360 50.000 0.00 0.00 0.00 4.35
4960 5304 1.281419 TATGTCGGGGAGAAAAGCCA 58.719 50.000 0.00 0.00 0.00 4.75
4961 5305 0.322546 ATGTCGGGGAGAAAAGCCAC 60.323 55.000 0.00 0.00 0.00 5.01
4963 5307 3.431725 CGGGGAGAAAAGCCACGC 61.432 66.667 0.00 0.00 46.30 5.34
4964 5308 3.062466 GGGGAGAAAAGCCACGCC 61.062 66.667 0.00 0.00 0.00 5.68
4965 5309 2.034221 GGGAGAAAAGCCACGCCT 59.966 61.111 0.00 0.00 0.00 5.52
4966 5310 2.335712 GGGAGAAAAGCCACGCCTG 61.336 63.158 0.00 0.00 0.00 4.85
4967 5311 1.302511 GGAGAAAAGCCACGCCTGA 60.303 57.895 0.00 0.00 0.00 3.86
4968 5312 1.578206 GGAGAAAAGCCACGCCTGAC 61.578 60.000 0.00 0.00 0.00 3.51
4980 5324 4.827087 CCTGACGCTGGCGCATCT 62.827 66.667 10.83 0.00 44.19 2.90
4981 5325 2.104928 CTGACGCTGGCGCATCTA 59.895 61.111 10.83 0.00 44.19 1.98
4982 5326 1.948138 CTGACGCTGGCGCATCTAG 60.948 63.158 10.83 2.50 44.19 2.43
4983 5327 3.333969 GACGCTGGCGCATCTAGC 61.334 66.667 10.83 12.27 44.79 3.42
4994 5338 0.530288 GCATCTAGCGATCTCCTCCC 59.470 60.000 0.00 0.00 0.00 4.30
4995 5339 1.181786 CATCTAGCGATCTCCTCCCC 58.818 60.000 0.00 0.00 0.00 4.81
4996 5340 1.080638 ATCTAGCGATCTCCTCCCCT 58.919 55.000 0.00 0.00 0.00 4.79
4997 5341 0.402504 TCTAGCGATCTCCTCCCCTC 59.597 60.000 0.00 0.00 0.00 4.30
4998 5342 0.404040 CTAGCGATCTCCTCCCCTCT 59.596 60.000 0.00 0.00 0.00 3.69
4999 5343 0.402504 TAGCGATCTCCTCCCCTCTC 59.597 60.000 0.00 0.00 0.00 3.20
5000 5344 1.906333 GCGATCTCCTCCCCTCTCC 60.906 68.421 0.00 0.00 0.00 3.71
5001 5345 1.539165 CGATCTCCTCCCCTCTCCA 59.461 63.158 0.00 0.00 0.00 3.86
5002 5346 0.825840 CGATCTCCTCCCCTCTCCAC 60.826 65.000 0.00 0.00 0.00 4.02
5003 5347 0.560688 GATCTCCTCCCCTCTCCACT 59.439 60.000 0.00 0.00 0.00 4.00
5004 5348 0.264359 ATCTCCTCCCCTCTCCACTG 59.736 60.000 0.00 0.00 0.00 3.66
5005 5349 1.149782 TCTCCTCCCCTCTCCACTGT 61.150 60.000 0.00 0.00 0.00 3.55
5006 5350 0.686112 CTCCTCCCCTCTCCACTGTC 60.686 65.000 0.00 0.00 0.00 3.51
5007 5351 1.687493 CCTCCCCTCTCCACTGTCC 60.687 68.421 0.00 0.00 0.00 4.02
5008 5352 1.390125 CTCCCCTCTCCACTGTCCT 59.610 63.158 0.00 0.00 0.00 3.85
5009 5353 0.686112 CTCCCCTCTCCACTGTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
5010 5354 1.687493 CCCCTCTCCACTGTCCTCC 60.687 68.421 0.00 0.00 0.00 4.30
5011 5355 1.079256 CCCTCTCCACTGTCCTCCA 59.921 63.158 0.00 0.00 0.00 3.86
5012 5356 0.545309 CCCTCTCCACTGTCCTCCAA 60.545 60.000 0.00 0.00 0.00 3.53
5013 5357 1.352083 CCTCTCCACTGTCCTCCAAA 58.648 55.000 0.00 0.00 0.00 3.28
5014 5358 1.912043 CCTCTCCACTGTCCTCCAAAT 59.088 52.381 0.00 0.00 0.00 2.32
5015 5359 2.307098 CCTCTCCACTGTCCTCCAAATT 59.693 50.000 0.00 0.00 0.00 1.82
5016 5360 3.341823 CTCTCCACTGTCCTCCAAATTG 58.658 50.000 0.00 0.00 0.00 2.32
5017 5361 1.815003 CTCCACTGTCCTCCAAATTGC 59.185 52.381 0.00 0.00 0.00 3.56
5018 5362 1.144708 TCCACTGTCCTCCAAATTGCA 59.855 47.619 0.00 0.00 0.00 4.08
5019 5363 1.542915 CCACTGTCCTCCAAATTGCAG 59.457 52.381 0.00 0.00 0.00 4.41
5020 5364 2.507484 CACTGTCCTCCAAATTGCAGA 58.493 47.619 4.91 0.00 0.00 4.26
5021 5365 2.486982 CACTGTCCTCCAAATTGCAGAG 59.513 50.000 4.91 0.00 0.00 3.35
5023 5367 1.425066 TGTCCTCCAAATTGCAGAGGT 59.575 47.619 16.21 0.00 46.15 3.85
5024 5368 1.815003 GTCCTCCAAATTGCAGAGGTG 59.185 52.381 16.21 5.24 46.15 4.00
5025 5369 1.704628 TCCTCCAAATTGCAGAGGTGA 59.295 47.619 16.21 0.00 46.15 4.02
5026 5370 2.309755 TCCTCCAAATTGCAGAGGTGAT 59.690 45.455 16.21 0.00 46.15 3.06
5027 5371 2.686915 CCTCCAAATTGCAGAGGTGATC 59.313 50.000 10.14 0.00 41.96 2.92
5028 5372 3.618351 CTCCAAATTGCAGAGGTGATCT 58.382 45.455 0.00 0.00 39.56 2.75
5029 5373 3.614092 TCCAAATTGCAGAGGTGATCTC 58.386 45.455 0.00 0.00 42.75 2.75
5030 5374 2.686915 CCAAATTGCAGAGGTGATCTCC 59.313 50.000 5.64 5.64 43.44 3.71
5031 5375 2.686915 CAAATTGCAGAGGTGATCTCCC 59.313 50.000 10.22 2.09 43.44 4.30
5032 5376 1.890552 ATTGCAGAGGTGATCTCCCT 58.109 50.000 10.22 7.18 43.44 4.20
5033 5377 0.907486 TTGCAGAGGTGATCTCCCTG 59.093 55.000 19.70 19.70 43.44 4.45
5034 5378 0.252421 TGCAGAGGTGATCTCCCTGT 60.252 55.000 22.45 12.47 43.44 4.00
5035 5379 0.463620 GCAGAGGTGATCTCCCTGTC 59.536 60.000 22.45 15.55 43.44 3.51
5036 5380 1.857965 CAGAGGTGATCTCCCTGTCA 58.142 55.000 17.42 0.00 43.44 3.58
5037 5381 2.396608 CAGAGGTGATCTCCCTGTCAT 58.603 52.381 17.42 0.00 43.44 3.06
5038 5382 3.570540 CAGAGGTGATCTCCCTGTCATA 58.429 50.000 17.42 0.00 43.44 2.15
5039 5383 3.573538 CAGAGGTGATCTCCCTGTCATAG 59.426 52.174 17.42 0.00 43.44 2.23
5040 5384 3.465210 AGAGGTGATCTCCCTGTCATAGA 59.535 47.826 10.22 0.00 43.44 1.98
5041 5385 4.078922 AGAGGTGATCTCCCTGTCATAGAA 60.079 45.833 10.22 0.00 43.44 2.10
5042 5386 4.222336 AGGTGATCTCCCTGTCATAGAAG 58.778 47.826 10.22 0.00 0.00 2.85
5043 5387 3.323403 GGTGATCTCCCTGTCATAGAAGG 59.677 52.174 2.14 0.00 0.00 3.46
5044 5388 4.219115 GTGATCTCCCTGTCATAGAAGGA 58.781 47.826 0.00 0.00 35.40 3.36
5045 5389 4.280677 GTGATCTCCCTGTCATAGAAGGAG 59.719 50.000 0.00 0.00 44.59 3.69
5047 5391 4.177537 TCTCCCTGTCATAGAAGGAGAG 57.822 50.000 2.97 1.61 46.33 3.20
5048 5392 3.117322 TCTCCCTGTCATAGAAGGAGAGG 60.117 52.174 2.97 0.00 46.33 3.69
5049 5393 2.859404 TCCCTGTCATAGAAGGAGAGGA 59.141 50.000 6.36 0.00 45.99 3.71
5050 5394 3.469006 TCCCTGTCATAGAAGGAGAGGAT 59.531 47.826 6.36 0.00 45.99 3.24
5051 5395 3.831911 CCCTGTCATAGAAGGAGAGGATC 59.168 52.174 6.36 0.00 45.99 3.36
5052 5396 3.831911 CCTGTCATAGAAGGAGAGGATCC 59.168 52.174 2.48 2.48 45.99 3.36
5059 5403 3.913107 GGAGAGGATCCCCCATGG 58.087 66.667 8.55 4.14 43.01 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.679884 GCAGCTAGTTGGATAGTTTACGTACT 60.680 42.308 8.78 0.00 0.00 2.73
1 2 5.458126 GCAGCTAGTTGGATAGTTTACGTAC 59.542 44.000 8.78 0.00 0.00 3.67
2 3 5.359009 AGCAGCTAGTTGGATAGTTTACGTA 59.641 40.000 8.78 0.00 0.00 3.57
3 4 4.159879 AGCAGCTAGTTGGATAGTTTACGT 59.840 41.667 8.78 0.00 0.00 3.57
4 5 4.504461 CAGCAGCTAGTTGGATAGTTTACG 59.496 45.833 8.78 0.00 0.00 3.18
5 6 5.661458 TCAGCAGCTAGTTGGATAGTTTAC 58.339 41.667 8.78 0.00 0.00 2.01
6 7 5.932619 TCAGCAGCTAGTTGGATAGTTTA 57.067 39.130 8.78 0.00 0.00 2.01
7 8 4.826274 TCAGCAGCTAGTTGGATAGTTT 57.174 40.909 8.78 0.00 0.00 2.66
8 9 4.406972 TCATCAGCAGCTAGTTGGATAGTT 59.593 41.667 8.78 0.00 0.00 2.24
9 10 3.963374 TCATCAGCAGCTAGTTGGATAGT 59.037 43.478 8.78 0.00 0.00 2.12
10 11 4.597404 TCATCAGCAGCTAGTTGGATAG 57.403 45.455 8.78 0.57 0.00 2.08
11 12 4.262765 CCATCATCAGCAGCTAGTTGGATA 60.263 45.833 8.78 0.00 0.00 2.59
12 13 3.496337 CCATCATCAGCAGCTAGTTGGAT 60.496 47.826 8.78 0.96 0.00 3.41
13 14 2.158856 CCATCATCAGCAGCTAGTTGGA 60.159 50.000 8.78 0.00 0.00 3.53
14 15 2.219458 CCATCATCAGCAGCTAGTTGG 58.781 52.381 8.78 0.00 0.00 3.77
15 16 2.915349 ACCATCATCAGCAGCTAGTTG 58.085 47.619 1.58 1.58 0.00 3.16
16 17 4.163078 AGTTACCATCATCAGCAGCTAGTT 59.837 41.667 0.00 0.00 0.00 2.24
17 18 3.708631 AGTTACCATCATCAGCAGCTAGT 59.291 43.478 0.00 0.00 0.00 2.57
18 19 4.039004 AGAGTTACCATCATCAGCAGCTAG 59.961 45.833 0.00 0.00 0.00 3.42
19 20 3.963374 AGAGTTACCATCATCAGCAGCTA 59.037 43.478 0.00 0.00 0.00 3.32
20 21 2.770802 AGAGTTACCATCATCAGCAGCT 59.229 45.455 0.00 0.00 0.00 4.24
21 22 3.191078 AGAGTTACCATCATCAGCAGC 57.809 47.619 0.00 0.00 0.00 5.25
22 23 6.094193 TCATAGAGTTACCATCATCAGCAG 57.906 41.667 0.00 0.00 0.00 4.24
23 24 5.600069 ACTCATAGAGTTACCATCATCAGCA 59.400 40.000 0.00 0.00 40.28 4.41
24 25 6.095432 ACTCATAGAGTTACCATCATCAGC 57.905 41.667 0.00 0.00 40.28 4.26
37 38 6.940739 ACTTGCATTACTCAACTCATAGAGT 58.059 36.000 0.00 0.00 45.64 3.24
38 39 7.840342 AACTTGCATTACTCAACTCATAGAG 57.160 36.000 0.00 0.00 37.87 2.43
39 40 8.621532 AAAACTTGCATTACTCAACTCATAGA 57.378 30.769 0.00 0.00 0.00 1.98
40 41 9.334693 GAAAAACTTGCATTACTCAACTCATAG 57.665 33.333 0.00 0.00 0.00 2.23
41 42 8.845227 TGAAAAACTTGCATTACTCAACTCATA 58.155 29.630 0.00 0.00 0.00 2.15
42 43 7.715657 TGAAAAACTTGCATTACTCAACTCAT 58.284 30.769 0.00 0.00 0.00 2.90
43 44 7.094508 TGAAAAACTTGCATTACTCAACTCA 57.905 32.000 0.00 0.00 0.00 3.41
44 45 7.327032 GGATGAAAAACTTGCATTACTCAACTC 59.673 37.037 0.00 0.00 0.00 3.01
45 46 7.147976 GGATGAAAAACTTGCATTACTCAACT 58.852 34.615 0.00 0.00 0.00 3.16
46 47 6.922957 TGGATGAAAAACTTGCATTACTCAAC 59.077 34.615 0.00 0.00 0.00 3.18
47 48 7.048629 TGGATGAAAAACTTGCATTACTCAA 57.951 32.000 0.00 0.00 0.00 3.02
48 49 6.647334 TGGATGAAAAACTTGCATTACTCA 57.353 33.333 0.00 0.00 0.00 3.41
49 50 7.945033 TTTGGATGAAAAACTTGCATTACTC 57.055 32.000 0.00 0.00 0.00 2.59
50 51 8.203485 TCTTTTGGATGAAAAACTTGCATTACT 58.797 29.630 0.00 0.00 33.04 2.24
51 52 8.364129 TCTTTTGGATGAAAAACTTGCATTAC 57.636 30.769 0.00 0.00 33.04 1.89
52 53 8.954950 TTCTTTTGGATGAAAAACTTGCATTA 57.045 26.923 0.00 0.00 33.04 1.90
53 54 7.862512 TTCTTTTGGATGAAAAACTTGCATT 57.137 28.000 0.00 0.00 33.04 3.56
54 55 7.769970 TCTTTCTTTTGGATGAAAAACTTGCAT 59.230 29.630 0.00 0.00 33.04 3.96
55 56 7.102346 TCTTTCTTTTGGATGAAAAACTTGCA 58.898 30.769 0.00 0.00 33.04 4.08
56 57 7.538303 TCTTTCTTTTGGATGAAAAACTTGC 57.462 32.000 0.00 0.00 33.04 4.01
57 58 9.925268 CAATCTTTCTTTTGGATGAAAAACTTG 57.075 29.630 0.00 0.00 33.04 3.16
58 59 9.671279 ACAATCTTTCTTTTGGATGAAAAACTT 57.329 25.926 0.00 0.00 33.04 2.66
81 82 7.919091 TGTTGTTGTTGTTGTTGTTACTTACAA 59.081 29.630 0.88 0.88 44.31 2.41
82 83 7.423199 TGTTGTTGTTGTTGTTGTTACTTACA 58.577 30.769 0.00 0.00 34.12 2.41
83 84 7.854934 TGTTGTTGTTGTTGTTGTTACTTAC 57.145 32.000 0.00 0.00 0.00 2.34
84 85 8.867112 TTTGTTGTTGTTGTTGTTGTTACTTA 57.133 26.923 0.00 0.00 0.00 2.24
85 86 7.517575 GCTTTGTTGTTGTTGTTGTTGTTACTT 60.518 33.333 0.00 0.00 0.00 2.24
86 87 6.074034 GCTTTGTTGTTGTTGTTGTTGTTACT 60.074 34.615 0.00 0.00 0.00 2.24
87 88 6.068300 GCTTTGTTGTTGTTGTTGTTGTTAC 58.932 36.000 0.00 0.00 0.00 2.50
88 89 5.177696 GGCTTTGTTGTTGTTGTTGTTGTTA 59.822 36.000 0.00 0.00 0.00 2.41
89 90 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
90 91 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
91 92 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
92 93 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
93 94 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
94 95 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
95 96 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
96 97 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
97 98 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
98 99 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
99 100 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
100 101 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
101 102 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
102 103 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
103 104 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
104 105 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
105 106 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
106 107 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
107 108 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
108 109 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
109 110 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
110 111 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
121 122 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
122 123 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
123 124 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
124 125 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
125 126 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
126 127 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
127 128 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
128 129 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
129 130 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
130 131 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
131 132 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
132 133 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
133 134 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
134 135 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
135 136 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
136 137 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
137 138 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
138 139 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
139 140 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
140 141 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
141 142 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
142 143 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
143 144 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
144 145 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
145 146 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
146 147 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
147 148 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
148 149 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
149 150 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
150 151 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
151 152 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
152 153 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
153 154 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
154 155 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
155 156 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
156 157 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
157 158 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
158 159 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
159 160 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
160 161 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
169 170 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
170 171 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
171 172 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
172 173 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
173 174 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
174 175 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
175 176 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
176 177 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
177 178 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
178 179 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
179 180 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
180 181 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
181 182 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
182 183 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
183 184 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
184 185 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
185 186 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
186 187 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
187 188 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
188 189 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
189 190 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
190 191 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
191 192 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
192 193 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
193 194 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
194 195 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
195 196 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
196 197 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
197 198 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
198 199 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
199 200 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
200 201 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
201 202 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
203 204 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
204 205 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
205 206 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
206 207 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
207 208 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
208 209 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
209 210 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
210 211 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
211 212 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
212 213 3.133721 ACAAAGAGCTAGCTATGGACAGG 59.866 47.826 19.38 4.81 0.00 4.00
213 214 4.367450 GACAAAGAGCTAGCTATGGACAG 58.633 47.826 19.38 6.25 0.00 3.51
214 215 3.133003 GGACAAAGAGCTAGCTATGGACA 59.867 47.826 19.38 0.00 0.00 4.02
215 216 3.493524 GGGACAAAGAGCTAGCTATGGAC 60.494 52.174 19.38 10.81 0.00 4.02
216 217 2.700897 GGGACAAAGAGCTAGCTATGGA 59.299 50.000 19.38 0.00 0.00 3.41
217 218 2.435805 TGGGACAAAGAGCTAGCTATGG 59.564 50.000 19.38 13.23 31.92 2.74
218 219 3.827008 TGGGACAAAGAGCTAGCTATG 57.173 47.619 19.38 18.66 31.92 2.23
232 233 8.934023 ATACTTACAATCTTTCTTTTGGGACA 57.066 30.769 0.00 0.00 0.00 4.02
235 236 9.341899 CGAAATACTTACAATCTTTCTTTTGGG 57.658 33.333 0.00 0.00 0.00 4.12
953 956 0.703056 CTAGGGAGGAGAGAGGGGGA 60.703 65.000 0.00 0.00 0.00 4.81
954 957 1.857777 CTAGGGAGGAGAGAGGGGG 59.142 68.421 0.00 0.00 0.00 5.40
1449 1458 5.163227 CCCTAACCCTTTTACATCTAGACCC 60.163 48.000 0.00 0.00 0.00 4.46
1501 1511 1.787012 TCCACGGAAAAGTAACTCGC 58.213 50.000 0.00 0.00 0.00 5.03
1513 1523 2.756207 TGACGAAGACATAATCCACGGA 59.244 45.455 0.00 0.00 32.81 4.69
1515 1525 3.507786 TGTGACGAAGACATAATCCACG 58.492 45.455 0.00 0.00 33.41 4.94
1519 1529 4.386867 TCCCTGTGACGAAGACATAATC 57.613 45.455 0.00 0.00 33.41 1.75
1524 1534 2.036387 TCTTTCCCTGTGACGAAGACA 58.964 47.619 0.00 0.00 0.00 3.41
1526 1536 3.830744 TTTCTTTCCCTGTGACGAAGA 57.169 42.857 0.00 0.00 0.00 2.87
1530 1540 4.787598 CTTGATTTTCTTTCCCTGTGACG 58.212 43.478 0.00 0.00 0.00 4.35
1531 1541 4.279420 AGCTTGATTTTCTTTCCCTGTGAC 59.721 41.667 0.00 0.00 0.00 3.67
1533 1543 4.861102 AGCTTGATTTTCTTTCCCTGTG 57.139 40.909 0.00 0.00 0.00 3.66
1579 1599 0.739561 TACAACCGTGCCAAAACACC 59.260 50.000 0.00 0.00 37.25 4.16
1671 1691 7.937394 AGGGTACATATATAAGCAGGAACAAAC 59.063 37.037 0.00 0.00 0.00 2.93
1678 1703 9.216117 GTGTAAAAGGGTACATATATAAGCAGG 57.784 37.037 0.00 0.00 36.42 4.85
2099 2331 4.343814 CCAAACTTCACAAACCCATAACCT 59.656 41.667 0.00 0.00 0.00 3.50
2126 2358 0.459237 CACGAGCTTGCTCTGTAGGG 60.459 60.000 18.75 6.29 0.00 3.53
2222 2454 1.089978 TACCTCTCTCCTGAACCCCA 58.910 55.000 0.00 0.00 0.00 4.96
2315 2549 5.520376 AGGCACCATAAAACATAGCAATC 57.480 39.130 0.00 0.00 0.00 2.67
2412 2646 6.270156 TGAATAATGTCTTCTTGCATGCAA 57.730 33.333 30.12 30.12 0.00 4.08
2413 2647 5.900865 TGAATAATGTCTTCTTGCATGCA 57.099 34.783 18.46 18.46 0.00 3.96
2515 2749 2.283298 ACTGTTGATATGCTGCTTCCG 58.717 47.619 0.00 0.00 0.00 4.30
2524 2758 7.148188 GGCATATATGGTGGAACTGTTGATATG 60.148 40.741 14.51 0.00 36.74 1.78
2599 2835 7.771826 ACTACAAACTTAGGACAGCAAACTTAA 59.228 33.333 0.00 0.00 0.00 1.85
3178 3454 6.491745 TGGAATTGGTACTGTAAATGAAAGCA 59.508 34.615 0.00 0.00 0.00 3.91
3542 3827 2.634815 AGGCCTGAATATGCAGTCAG 57.365 50.000 3.11 14.81 44.61 3.51
3740 4031 4.038271 TCCTGAGGCTGAAAATGTTCAT 57.962 40.909 0.00 0.00 42.85 2.57
3965 4256 6.821388 AGATTTGCGCTTATATAGATAGGGG 58.179 40.000 9.73 0.00 32.54 4.79
3973 4264 8.088365 TCAAGAGCTAAGATTTGCGCTTATATA 58.912 33.333 9.73 0.00 43.92 0.86
4021 4312 2.563013 ATTAGCCAGGCTGCTGGTGG 62.563 60.000 25.59 13.43 45.87 4.61
4022 4313 1.077212 ATTAGCCAGGCTGCTGGTG 60.077 57.895 25.59 0.00 45.87 4.17
4053 4370 0.034670 GGAGGGCTCACTGCAGAAAT 60.035 55.000 23.35 0.00 45.15 2.17
4222 4543 4.122776 GACGGACAACAGCTGATCATAAT 58.877 43.478 23.35 0.04 0.00 1.28
4248 4569 4.785301 ACATATCCAAAGGATCACCACAG 58.215 43.478 1.05 0.00 42.11 3.66
4302 4623 5.727434 ACGGTAAATAACAGTAGACAAGGG 58.273 41.667 0.00 0.00 34.49 3.95
4356 4677 1.335496 GCAGGAAGCAAACGGTACAAA 59.665 47.619 0.00 0.00 44.79 2.83
4415 4746 8.432805 GGGTTATCATCTTCTCTGATAAAAGGA 58.567 37.037 7.18 0.00 43.53 3.36
4417 4748 9.618890 TTGGGTTATCATCTTCTCTGATAAAAG 57.381 33.333 7.18 0.00 43.53 2.27
4433 4764 3.153919 GACCAAAGCTGTTGGGTTATCA 58.846 45.455 23.11 0.00 40.50 2.15
4557 4893 9.686683 AAGTGCTAATCAAACCATTCTAGTAAT 57.313 29.630 0.00 0.00 0.00 1.89
4558 4894 8.946085 CAAGTGCTAATCAAACCATTCTAGTAA 58.054 33.333 0.00 0.00 0.00 2.24
4582 4920 0.953471 CGAATCCACGGCTGAACCAA 60.953 55.000 0.00 0.00 39.03 3.67
4585 4923 0.669318 TGACGAATCCACGGCTGAAC 60.669 55.000 0.00 0.00 42.29 3.18
4615 4959 5.503662 TCACAACTACGACTACAAAGACA 57.496 39.130 0.00 0.00 0.00 3.41
4619 4963 5.336213 GGGAGATCACAACTACGACTACAAA 60.336 44.000 0.00 0.00 0.00 2.83
4636 4980 3.888930 TGTCACCAAACAAAAGGGAGATC 59.111 43.478 0.00 0.00 0.00 2.75
4656 5000 9.520515 ACAGAACAATAGATAGAACCAAAATGT 57.479 29.630 0.00 0.00 0.00 2.71
4742 5086 7.015064 ACCAAGGGAGTAGTAGAAAGTAGAAA 58.985 38.462 0.00 0.00 0.00 2.52
4764 5108 0.248289 GCTACCAAACTAGCCGACCA 59.752 55.000 0.00 0.00 34.16 4.02
4765 5109 3.061093 GCTACCAAACTAGCCGACC 57.939 57.895 0.00 0.00 34.16 4.79
4770 5114 2.762535 TCACAGGCTACCAAACTAGC 57.237 50.000 0.00 0.00 38.80 3.42
4771 5115 3.432326 GGGATCACAGGCTACCAAACTAG 60.432 52.174 0.00 0.00 0.00 2.57
4772 5116 2.504175 GGGATCACAGGCTACCAAACTA 59.496 50.000 0.00 0.00 0.00 2.24
4773 5117 1.282157 GGGATCACAGGCTACCAAACT 59.718 52.381 0.00 0.00 0.00 2.66
4774 5118 1.004277 TGGGATCACAGGCTACCAAAC 59.996 52.381 0.00 0.00 0.00 2.93
4775 5119 1.281867 CTGGGATCACAGGCTACCAAA 59.718 52.381 17.80 0.00 34.84 3.28
4776 5120 0.911769 CTGGGATCACAGGCTACCAA 59.088 55.000 17.80 0.00 34.84 3.67
4777 5121 2.607811 CTGGGATCACAGGCTACCA 58.392 57.895 17.80 0.00 34.84 3.25
4784 5128 1.419387 GATCTTCCCCTGGGATCACAG 59.581 57.143 18.63 18.63 44.74 3.66
4785 5129 1.511613 GATCTTCCCCTGGGATCACA 58.488 55.000 16.20 0.00 44.74 3.58
4786 5130 0.767998 GGATCTTCCCCTGGGATCAC 59.232 60.000 16.20 0.00 44.74 3.06
4787 5131 3.264477 GGATCTTCCCCTGGGATCA 57.736 57.895 16.20 0.00 44.74 2.92
4797 5141 1.460504 GGTTTTGACGGGGATCTTCC 58.539 55.000 0.00 0.00 35.23 3.46
4798 5142 1.271707 TGGGTTTTGACGGGGATCTTC 60.272 52.381 0.00 0.00 0.00 2.87
4799 5143 0.774908 TGGGTTTTGACGGGGATCTT 59.225 50.000 0.00 0.00 0.00 2.40
4800 5144 0.328258 CTGGGTTTTGACGGGGATCT 59.672 55.000 0.00 0.00 0.00 2.75
4801 5145 0.679960 CCTGGGTTTTGACGGGGATC 60.680 60.000 0.00 0.00 0.00 3.36
4802 5146 1.382629 CCTGGGTTTTGACGGGGAT 59.617 57.895 0.00 0.00 0.00 3.85
4803 5147 2.840576 CCTGGGTTTTGACGGGGA 59.159 61.111 0.00 0.00 0.00 4.81
4804 5148 2.282887 CCCTGGGTTTTGACGGGG 60.283 66.667 3.97 0.00 46.28 5.73
4805 5149 2.989253 GCCCTGGGTTTTGACGGG 60.989 66.667 15.56 0.00 37.97 5.28
4806 5150 2.203422 TGCCCTGGGTTTTGACGG 60.203 61.111 15.56 0.00 0.00 4.79
4807 5151 1.178534 ATGTGCCCTGGGTTTTGACG 61.179 55.000 15.56 0.00 0.00 4.35
4808 5152 1.818674 CTATGTGCCCTGGGTTTTGAC 59.181 52.381 15.56 4.51 0.00 3.18
4809 5153 1.890573 GCTATGTGCCCTGGGTTTTGA 60.891 52.381 15.56 0.00 35.15 2.69
4810 5154 0.532115 GCTATGTGCCCTGGGTTTTG 59.468 55.000 15.56 1.68 35.15 2.44
4811 5155 2.976099 GCTATGTGCCCTGGGTTTT 58.024 52.632 15.56 0.00 35.15 2.43
4812 5156 4.764143 GCTATGTGCCCTGGGTTT 57.236 55.556 15.56 0.00 35.15 3.27
4838 5182 1.721133 GTTTTGCACGGCGAGTTCG 60.721 57.895 16.62 0.00 43.27 3.95
4839 5183 1.370051 GGTTTTGCACGGCGAGTTC 60.370 57.895 16.62 0.00 0.00 3.01
4840 5184 2.115911 TGGTTTTGCACGGCGAGTT 61.116 52.632 16.62 0.00 0.00 3.01
4841 5185 2.515057 TGGTTTTGCACGGCGAGT 60.515 55.556 16.62 0.00 0.00 4.18
4842 5186 2.051345 GTGGTTTTGCACGGCGAG 60.051 61.111 16.62 7.03 0.00 5.03
4843 5187 3.587933 GGTGGTTTTGCACGGCGA 61.588 61.111 16.62 0.00 0.00 5.54
4844 5188 4.973360 CGGTGGTTTTGCACGGCG 62.973 66.667 4.80 4.80 0.00 6.46
4846 5190 4.973360 CGCGGTGGTTTTGCACGG 62.973 66.667 0.00 0.00 0.00 4.94
4847 5191 3.943034 TCGCGGTGGTTTTGCACG 61.943 61.111 6.13 0.00 0.00 5.34
4848 5192 2.353030 GTCGCGGTGGTTTTGCAC 60.353 61.111 6.13 0.00 0.00 4.57
4849 5193 1.729470 AATGTCGCGGTGGTTTTGCA 61.729 50.000 6.13 0.00 0.00 4.08
4850 5194 0.596341 AAATGTCGCGGTGGTTTTGC 60.596 50.000 6.13 0.00 0.00 3.68
4851 5195 1.127701 CAAATGTCGCGGTGGTTTTG 58.872 50.000 6.13 6.41 0.00 2.44
4852 5196 0.031449 CCAAATGTCGCGGTGGTTTT 59.969 50.000 6.13 0.00 0.00 2.43
4853 5197 1.104577 ACCAAATGTCGCGGTGGTTT 61.105 50.000 6.13 0.00 41.68 3.27
4854 5198 1.512156 GACCAAATGTCGCGGTGGTT 61.512 55.000 6.13 0.00 44.42 3.67
4855 5199 2.112297 ACCAAATGTCGCGGTGGT 59.888 55.556 6.13 9.79 39.58 4.16
4856 5200 2.867472 GACCAAATGTCGCGGTGG 59.133 61.111 6.13 9.12 33.49 4.61
4863 5207 1.135859 CAAGCGAGCAGACCAAATGTC 60.136 52.381 0.00 0.00 44.82 3.06
4864 5208 0.877071 CAAGCGAGCAGACCAAATGT 59.123 50.000 0.00 0.00 0.00 2.71
4865 5209 0.455633 GCAAGCGAGCAGACCAAATG 60.456 55.000 0.00 0.00 0.00 2.32
4866 5210 0.607489 AGCAAGCGAGCAGACCAAAT 60.607 50.000 6.21 0.00 36.85 2.32
4867 5211 1.227943 AGCAAGCGAGCAGACCAAA 60.228 52.632 6.21 0.00 36.85 3.28
4868 5212 1.962822 CAGCAAGCGAGCAGACCAA 60.963 57.895 6.21 0.00 36.85 3.67
4869 5213 2.357881 CAGCAAGCGAGCAGACCA 60.358 61.111 6.21 0.00 36.85 4.02
4870 5214 3.123620 CCAGCAAGCGAGCAGACC 61.124 66.667 6.21 0.00 36.85 3.85
4871 5215 2.866085 ATCCCAGCAAGCGAGCAGAC 62.866 60.000 6.21 0.00 36.85 3.51
4872 5216 1.329913 TATCCCAGCAAGCGAGCAGA 61.330 55.000 6.21 0.71 36.85 4.26
4873 5217 0.250209 ATATCCCAGCAAGCGAGCAG 60.250 55.000 6.21 0.00 36.85 4.24
4874 5218 0.181114 AATATCCCAGCAAGCGAGCA 59.819 50.000 6.21 0.00 36.85 4.26
4875 5219 0.871057 GAATATCCCAGCAAGCGAGC 59.129 55.000 0.00 0.00 0.00 5.03
4876 5220 2.411904 GAGAATATCCCAGCAAGCGAG 58.588 52.381 0.00 0.00 0.00 5.03
4877 5221 1.070758 GGAGAATATCCCAGCAAGCGA 59.929 52.381 0.00 0.00 43.01 4.93
4878 5222 1.517242 GGAGAATATCCCAGCAAGCG 58.483 55.000 0.00 0.00 43.01 4.68
4888 5232 3.213160 AGGGGATCAGGGGAGAATATC 57.787 52.381 0.00 0.00 0.00 1.63
4889 5233 3.536287 GAAGGGGATCAGGGGAGAATAT 58.464 50.000 0.00 0.00 0.00 1.28
4890 5234 2.429383 GGAAGGGGATCAGGGGAGAATA 60.429 54.545 0.00 0.00 0.00 1.75
4891 5235 1.700576 GGAAGGGGATCAGGGGAGAAT 60.701 57.143 0.00 0.00 0.00 2.40
4892 5236 0.327576 GGAAGGGGATCAGGGGAGAA 60.328 60.000 0.00 0.00 0.00 2.87
4893 5237 1.238896 AGGAAGGGGATCAGGGGAGA 61.239 60.000 0.00 0.00 0.00 3.71
4894 5238 0.327964 AAGGAAGGGGATCAGGGGAG 60.328 60.000 0.00 0.00 0.00 4.30
4895 5239 0.123266 AAAGGAAGGGGATCAGGGGA 59.877 55.000 0.00 0.00 0.00 4.81
4896 5240 0.553333 GAAAGGAAGGGGATCAGGGG 59.447 60.000 0.00 0.00 0.00 4.79
4897 5241 0.553333 GGAAAGGAAGGGGATCAGGG 59.447 60.000 0.00 0.00 0.00 4.45
4898 5242 0.553333 GGGAAAGGAAGGGGATCAGG 59.447 60.000 0.00 0.00 0.00 3.86
4899 5243 1.213926 CAGGGAAAGGAAGGGGATCAG 59.786 57.143 0.00 0.00 0.00 2.90
4900 5244 1.298953 CAGGGAAAGGAAGGGGATCA 58.701 55.000 0.00 0.00 0.00 2.92
4901 5245 0.553333 CCAGGGAAAGGAAGGGGATC 59.447 60.000 0.00 0.00 0.00 3.36
4902 5246 0.926220 CCCAGGGAAAGGAAGGGGAT 60.926 60.000 0.00 0.00 37.80 3.85
4903 5247 1.543896 CCCAGGGAAAGGAAGGGGA 60.544 63.158 0.00 0.00 37.80 4.81
4904 5248 1.543896 TCCCAGGGAAAGGAAGGGG 60.544 63.158 5.36 0.00 40.02 4.79
4905 5249 0.550147 TCTCCCAGGGAAAGGAAGGG 60.550 60.000 10.32 0.00 40.98 3.95
4906 5250 0.915364 CTCTCCCAGGGAAAGGAAGG 59.085 60.000 10.32 0.00 0.00 3.46
4907 5251 1.958288 TCTCTCCCAGGGAAAGGAAG 58.042 55.000 10.32 2.61 0.00 3.46
4908 5252 2.433444 TTCTCTCCCAGGGAAAGGAA 57.567 50.000 10.32 11.01 0.00 3.36
4909 5253 2.375509 GTTTTCTCTCCCAGGGAAAGGA 59.624 50.000 10.32 0.00 31.88 3.36
4910 5254 2.555448 GGTTTTCTCTCCCAGGGAAAGG 60.555 54.545 10.32 2.63 31.88 3.11
4911 5255 2.108250 TGGTTTTCTCTCCCAGGGAAAG 59.892 50.000 10.32 5.95 31.88 2.62
4912 5256 2.140224 TGGTTTTCTCTCCCAGGGAAA 58.860 47.619 10.32 0.00 0.00 3.13
4913 5257 1.827792 TGGTTTTCTCTCCCAGGGAA 58.172 50.000 10.32 0.00 0.00 3.97
4914 5258 1.635487 CATGGTTTTCTCTCCCAGGGA 59.365 52.381 8.35 8.35 0.00 4.20
4915 5259 1.957113 GCATGGTTTTCTCTCCCAGGG 60.957 57.143 0.00 0.00 30.95 4.45
4916 5260 1.467920 GCATGGTTTTCTCTCCCAGG 58.532 55.000 0.00 0.00 33.34 4.45
4917 5261 1.005215 AGGCATGGTTTTCTCTCCCAG 59.995 52.381 0.00 0.00 0.00 4.45
4918 5262 1.075601 AGGCATGGTTTTCTCTCCCA 58.924 50.000 0.00 0.00 0.00 4.37
4919 5263 3.584733 ATAGGCATGGTTTTCTCTCCC 57.415 47.619 0.00 0.00 0.00 4.30
4920 5264 7.398024 ACATATATAGGCATGGTTTTCTCTCC 58.602 38.462 0.00 0.00 0.00 3.71
4921 5265 7.276658 CGACATATATAGGCATGGTTTTCTCTC 59.723 40.741 0.00 0.00 0.00 3.20
4922 5266 7.099764 CGACATATATAGGCATGGTTTTCTCT 58.900 38.462 0.00 0.00 0.00 3.10
4923 5267 6.313905 CCGACATATATAGGCATGGTTTTCTC 59.686 42.308 0.00 0.00 0.00 2.87
4924 5268 6.173339 CCGACATATATAGGCATGGTTTTCT 58.827 40.000 0.00 0.00 0.00 2.52
4925 5269 5.354234 CCCGACATATATAGGCATGGTTTTC 59.646 44.000 0.00 0.00 0.00 2.29
4926 5270 5.253330 CCCGACATATATAGGCATGGTTTT 58.747 41.667 0.00 0.00 0.00 2.43
4927 5271 4.324254 CCCCGACATATATAGGCATGGTTT 60.324 45.833 0.00 0.00 0.00 3.27
4928 5272 3.199946 CCCCGACATATATAGGCATGGTT 59.800 47.826 0.00 0.00 0.00 3.67
4929 5273 2.771943 CCCCGACATATATAGGCATGGT 59.228 50.000 0.00 0.00 0.00 3.55
4930 5274 3.038280 TCCCCGACATATATAGGCATGG 58.962 50.000 0.00 0.00 0.00 3.66
4931 5275 3.960755 TCTCCCCGACATATATAGGCATG 59.039 47.826 0.00 0.00 0.00 4.06
4932 5276 4.265856 TCTCCCCGACATATATAGGCAT 57.734 45.455 0.00 0.00 0.00 4.40
4933 5277 3.750501 TCTCCCCGACATATATAGGCA 57.249 47.619 0.00 0.00 0.00 4.75
4934 5278 5.416271 TTTTCTCCCCGACATATATAGGC 57.584 43.478 0.00 0.00 0.00 3.93
4935 5279 5.420409 GCTTTTCTCCCCGACATATATAGG 58.580 45.833 0.00 0.00 0.00 2.57
4936 5280 5.046591 TGGCTTTTCTCCCCGACATATATAG 60.047 44.000 0.00 0.00 0.00 1.31
4937 5281 4.841813 TGGCTTTTCTCCCCGACATATATA 59.158 41.667 0.00 0.00 0.00 0.86
4938 5282 3.650942 TGGCTTTTCTCCCCGACATATAT 59.349 43.478 0.00 0.00 0.00 0.86
4939 5283 3.042682 TGGCTTTTCTCCCCGACATATA 58.957 45.455 0.00 0.00 0.00 0.86
4940 5284 1.843851 TGGCTTTTCTCCCCGACATAT 59.156 47.619 0.00 0.00 0.00 1.78
4941 5285 1.065709 GTGGCTTTTCTCCCCGACATA 60.066 52.381 0.00 0.00 0.00 2.29
4942 5286 0.322546 GTGGCTTTTCTCCCCGACAT 60.323 55.000 0.00 0.00 0.00 3.06
4943 5287 1.072505 GTGGCTTTTCTCCCCGACA 59.927 57.895 0.00 0.00 0.00 4.35
4944 5288 2.033194 CGTGGCTTTTCTCCCCGAC 61.033 63.158 0.00 0.00 0.00 4.79
4945 5289 2.345991 CGTGGCTTTTCTCCCCGA 59.654 61.111 0.00 0.00 0.00 5.14
4946 5290 3.431725 GCGTGGCTTTTCTCCCCG 61.432 66.667 0.00 0.00 0.00 5.73
4947 5291 3.062466 GGCGTGGCTTTTCTCCCC 61.062 66.667 0.00 0.00 0.00 4.81
4948 5292 2.034221 AGGCGTGGCTTTTCTCCC 59.966 61.111 0.00 0.00 0.00 4.30
4949 5293 1.302511 TCAGGCGTGGCTTTTCTCC 60.303 57.895 6.56 0.00 0.00 3.71
4950 5294 1.869690 GTCAGGCGTGGCTTTTCTC 59.130 57.895 3.23 0.00 0.00 2.87
4951 5295 1.961277 CGTCAGGCGTGGCTTTTCT 60.961 57.895 9.60 0.00 35.54 2.52
4952 5296 2.556287 CGTCAGGCGTGGCTTTTC 59.444 61.111 9.60 0.00 35.54 2.29
4953 5297 3.660111 GCGTCAGGCGTGGCTTTT 61.660 61.111 9.60 0.00 43.66 2.27
4975 5319 0.530288 GGGAGGAGATCGCTAGATGC 59.470 60.000 0.00 0.00 37.19 3.91
4976 5320 1.181786 GGGGAGGAGATCGCTAGATG 58.818 60.000 0.00 0.00 40.63 2.90
4977 5321 1.005450 GAGGGGAGGAGATCGCTAGAT 59.995 57.143 0.00 0.00 40.63 1.98
4978 5322 0.402504 GAGGGGAGGAGATCGCTAGA 59.597 60.000 0.00 0.00 40.63 2.43
4979 5323 0.404040 AGAGGGGAGGAGATCGCTAG 59.596 60.000 0.00 0.00 40.63 3.42
4980 5324 0.402504 GAGAGGGGAGGAGATCGCTA 59.597 60.000 0.00 0.00 40.63 4.26
4981 5325 1.152830 GAGAGGGGAGGAGATCGCT 59.847 63.158 0.00 0.00 40.63 4.93
4982 5326 1.906333 GGAGAGGGGAGGAGATCGC 60.906 68.421 0.00 0.00 40.10 4.58
4983 5327 0.825840 GTGGAGAGGGGAGGAGATCG 60.826 65.000 0.00 0.00 0.00 3.69
4984 5328 0.560688 AGTGGAGAGGGGAGGAGATC 59.439 60.000 0.00 0.00 0.00 2.75
4985 5329 0.264359 CAGTGGAGAGGGGAGGAGAT 59.736 60.000 0.00 0.00 0.00 2.75
4986 5330 1.149782 ACAGTGGAGAGGGGAGGAGA 61.150 60.000 0.00 0.00 0.00 3.71
4987 5331 0.686112 GACAGTGGAGAGGGGAGGAG 60.686 65.000 0.00 0.00 0.00 3.69
4988 5332 1.388531 GACAGTGGAGAGGGGAGGA 59.611 63.158 0.00 0.00 0.00 3.71
4989 5333 1.687493 GGACAGTGGAGAGGGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
4990 5334 0.686112 GAGGACAGTGGAGAGGGGAG 60.686 65.000 0.00 0.00 0.00 4.30
4991 5335 1.388531 GAGGACAGTGGAGAGGGGA 59.611 63.158 0.00 0.00 0.00 4.81
4992 5336 1.687493 GGAGGACAGTGGAGAGGGG 60.687 68.421 0.00 0.00 0.00 4.79
4993 5337 0.545309 TTGGAGGACAGTGGAGAGGG 60.545 60.000 0.00 0.00 0.00 4.30
4994 5338 1.352083 TTTGGAGGACAGTGGAGAGG 58.648 55.000 0.00 0.00 0.00 3.69
4995 5339 3.341823 CAATTTGGAGGACAGTGGAGAG 58.658 50.000 0.00 0.00 0.00 3.20
4996 5340 2.553028 GCAATTTGGAGGACAGTGGAGA 60.553 50.000 0.00 0.00 0.00 3.71
4997 5341 1.815003 GCAATTTGGAGGACAGTGGAG 59.185 52.381 0.00 0.00 0.00 3.86
4998 5342 1.144708 TGCAATTTGGAGGACAGTGGA 59.855 47.619 0.00 0.00 0.00 4.02
4999 5343 1.542915 CTGCAATTTGGAGGACAGTGG 59.457 52.381 9.85 0.00 31.71 4.00
5000 5344 2.486982 CTCTGCAATTTGGAGGACAGTG 59.513 50.000 16.64 4.00 36.40 3.66
5001 5345 2.553904 CCTCTGCAATTTGGAGGACAGT 60.554 50.000 16.64 0.00 46.82 3.55
5002 5346 2.089980 CCTCTGCAATTTGGAGGACAG 58.910 52.381 16.64 7.84 46.82 3.51
5003 5347 1.425066 ACCTCTGCAATTTGGAGGACA 59.575 47.619 22.10 3.87 46.82 4.02
5004 5348 1.815003 CACCTCTGCAATTTGGAGGAC 59.185 52.381 22.10 0.00 46.82 3.85
5005 5349 1.704628 TCACCTCTGCAATTTGGAGGA 59.295 47.619 22.10 8.86 46.82 3.71
5007 5351 3.618351 AGATCACCTCTGCAATTTGGAG 58.382 45.455 11.35 11.35 37.15 3.86
5008 5352 3.614092 GAGATCACCTCTGCAATTTGGA 58.386 45.455 0.00 0.00 38.86 3.53
5009 5353 2.686915 GGAGATCACCTCTGCAATTTGG 59.313 50.000 1.33 0.00 41.70 3.28
5010 5354 2.686915 GGGAGATCACCTCTGCAATTTG 59.313 50.000 9.20 0.00 43.75 2.32
5011 5355 2.579860 AGGGAGATCACCTCTGCAATTT 59.420 45.455 9.20 0.00 43.75 1.82
5012 5356 2.092538 CAGGGAGATCACCTCTGCAATT 60.093 50.000 9.20 0.00 43.75 2.32
5013 5357 1.489649 CAGGGAGATCACCTCTGCAAT 59.510 52.381 9.20 0.00 43.75 3.56
5014 5358 0.907486 CAGGGAGATCACCTCTGCAA 59.093 55.000 9.20 0.00 43.75 4.08
5015 5359 0.252421 ACAGGGAGATCACCTCTGCA 60.252 55.000 19.97 0.00 43.75 4.41
5016 5360 0.463620 GACAGGGAGATCACCTCTGC 59.536 60.000 19.97 12.86 41.66 4.26
5017 5361 1.857965 TGACAGGGAGATCACCTCTG 58.142 55.000 19.05 19.05 41.66 3.35
5018 5362 2.864885 ATGACAGGGAGATCACCTCT 57.135 50.000 9.20 2.08 41.66 3.69
5019 5363 3.838565 TCTATGACAGGGAGATCACCTC 58.161 50.000 9.20 0.00 41.22 3.85
5020 5364 3.981516 TCTATGACAGGGAGATCACCT 57.018 47.619 9.20 6.16 39.43 4.00
5021 5365 3.323403 CCTTCTATGACAGGGAGATCACC 59.677 52.174 0.00 0.00 0.00 4.02
5022 5366 4.219115 TCCTTCTATGACAGGGAGATCAC 58.781 47.826 0.00 0.00 0.00 3.06
5023 5367 4.168871 TCTCCTTCTATGACAGGGAGATCA 59.831 45.833 5.97 0.00 44.97 2.92
5024 5368 4.735369 TCTCCTTCTATGACAGGGAGATC 58.265 47.826 5.97 0.00 44.97 2.75
5025 5369 4.823364 TCTCCTTCTATGACAGGGAGAT 57.177 45.455 5.97 0.00 44.97 2.75
5026 5370 3.117322 CCTCTCCTTCTATGACAGGGAGA 60.117 52.174 9.25 9.25 46.82 3.71
5027 5371 3.117322 TCCTCTCCTTCTATGACAGGGAG 60.117 52.174 0.00 0.00 43.35 4.30
5028 5372 2.859404 TCCTCTCCTTCTATGACAGGGA 59.141 50.000 0.00 0.00 0.00 4.20
5029 5373 3.320610 TCCTCTCCTTCTATGACAGGG 57.679 52.381 0.00 0.00 0.00 4.45
5030 5374 3.831911 GGATCCTCTCCTTCTATGACAGG 59.168 52.174 3.84 0.00 41.29 4.00
5031 5375 3.831911 GGGATCCTCTCCTTCTATGACAG 59.168 52.174 12.58 0.00 44.28 3.51
5032 5376 3.438668 GGGGATCCTCTCCTTCTATGACA 60.439 52.174 12.58 0.00 44.28 3.58
5033 5377 3.169908 GGGGATCCTCTCCTTCTATGAC 58.830 54.545 12.58 0.00 44.28 3.06
5034 5378 2.112691 GGGGGATCCTCTCCTTCTATGA 59.887 54.545 12.53 0.00 44.28 2.15
5035 5379 2.158097 TGGGGGATCCTCTCCTTCTATG 60.158 54.545 12.53 0.00 44.28 2.23
5036 5380 2.165112 TGGGGGATCCTCTCCTTCTAT 58.835 52.381 12.53 0.00 44.28 1.98
5037 5381 1.632769 TGGGGGATCCTCTCCTTCTA 58.367 55.000 12.53 0.00 44.28 2.10
5038 5382 0.955752 ATGGGGGATCCTCTCCTTCT 59.044 55.000 12.53 0.00 44.28 2.85
5039 5383 1.063183 CATGGGGGATCCTCTCCTTC 58.937 60.000 12.53 0.00 44.28 3.46
5040 5384 0.402566 CCATGGGGGATCCTCTCCTT 60.403 60.000 12.53 6.73 44.28 3.36
5041 5385 1.241327 CCATGGGGGATCCTCTCCT 59.759 63.158 12.53 0.00 44.28 3.69
5042 5386 3.913107 CCATGGGGGATCCTCTCC 58.087 66.667 12.53 11.54 44.11 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.