Multiple sequence alignment - TraesCS2A01G472100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G472100 chr2A 100.000 2459 0 0 1 2459 713933285 713930827 0.000000e+00 4542
1 TraesCS2A01G472100 chr2B 91.916 1002 57 16 689 1684 691781247 691780264 0.000000e+00 1380
2 TraesCS2A01G472100 chr2B 87.801 623 36 12 1869 2459 691780197 691779583 0.000000e+00 693
3 TraesCS2A01G472100 chr2B 93.284 268 14 3 423 690 691787715 691787452 2.290000e-105 392
4 TraesCS2A01G472100 chr2B 91.633 251 15 3 414 659 691781491 691781242 2.340000e-90 342
5 TraesCS2A01G472100 chr2D 92.998 557 33 3 1134 1689 575763849 575763298 0.000000e+00 808
6 TraesCS2A01G472100 chr2D 87.087 635 55 16 1848 2459 575763300 575762670 0.000000e+00 693
7 TraesCS2A01G472100 chr2D 93.498 323 18 2 414 735 575764274 575763954 6.150000e-131 477
8 TraesCS2A01G472100 chr5D 95.092 163 7 1 1688 1850 12270501 12270340 3.140000e-64 255
9 TraesCS2A01G472100 chr1A 93.902 164 10 0 1687 1850 325051737 325051900 5.250000e-62 248
10 TraesCS2A01G472100 chr6D 93.865 163 10 0 1688 1850 10417983 10418145 1.890000e-61 246
11 TraesCS2A01G472100 chr3D 93.865 163 10 0 1688 1850 137982509 137982347 1.890000e-61 246
12 TraesCS2A01G472100 chr3B 93.865 163 10 0 1688 1850 201028669 201028507 1.890000e-61 246
13 TraesCS2A01G472100 chr4D 93.865 163 9 1 1688 1850 334164391 334164552 6.790000e-61 244
14 TraesCS2A01G472100 chr5B 93.293 164 11 0 1687 1850 607838389 607838552 2.440000e-60 243
15 TraesCS2A01G472100 chr5B 90.960 177 12 4 1680 1854 554821201 554821027 4.090000e-58 235
16 TraesCS2A01G472100 chr7D 91.813 171 14 0 1687 1857 571260880 571261050 3.160000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G472100 chr2A 713930827 713933285 2458 True 4542.000000 4542 100.000000 1 2459 1 chr2A.!!$R1 2458
1 TraesCS2A01G472100 chr2B 691779583 691781491 1908 True 805.000000 1380 90.450000 414 2459 3 chr2B.!!$R2 2045
2 TraesCS2A01G472100 chr2D 575762670 575764274 1604 True 659.333333 808 91.194333 414 2459 3 chr2D.!!$R1 2045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.033781 ACGCAAGGTGCATGCAAATT 59.966 45.0 24.58 17.10 45.36 1.82 F
168 169 0.717224 CGCAAGGTGCATGCAAATTC 59.283 50.0 24.58 9.96 45.36 2.17 F
1188 1196 0.601841 TTCCCGCAGTTCCGAAACTC 60.602 55.0 0.00 0.00 43.99 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1161 1169 0.035439 GAACTGCGGGAATGGAAGGA 60.035 55.000 0.0 0.0 0.00 3.36 R
1386 1394 0.106669 GGAACCCAGGAATGGTAGGC 60.107 60.000 0.0 0.0 34.15 3.93 R
2101 2164 1.004745 AGCCACGGGATTTGTTCAGAT 59.995 47.619 0.0 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.642445 TGCATGGCATAAGATGAAGTTG 57.358 40.909 0.00 0.00 31.71 3.16
26 27 4.018490 TGCATGGCATAAGATGAAGTTGT 58.982 39.130 0.00 0.00 31.71 3.32
27 28 4.096833 TGCATGGCATAAGATGAAGTTGTC 59.903 41.667 0.00 0.00 31.71 3.18
28 29 4.337555 GCATGGCATAAGATGAAGTTGTCT 59.662 41.667 0.00 0.00 0.00 3.41
29 30 5.163581 GCATGGCATAAGATGAAGTTGTCTT 60.164 40.000 0.00 5.66 38.22 3.01
30 31 6.038603 GCATGGCATAAGATGAAGTTGTCTTA 59.961 38.462 0.00 8.84 40.19 2.10
31 32 7.255381 GCATGGCATAAGATGAAGTTGTCTTAT 60.255 37.037 0.00 11.62 44.38 1.73
37 38 8.885494 ATAAGATGAAGTTGTCTTATGAGAGC 57.115 34.615 14.73 0.00 42.83 4.09
38 39 5.347342 AGATGAAGTTGTCTTATGAGAGCG 58.653 41.667 0.00 0.00 33.64 5.03
39 40 3.849911 TGAAGTTGTCTTATGAGAGCGG 58.150 45.455 0.00 0.00 33.64 5.52
40 41 2.301577 AGTTGTCTTATGAGAGCGGC 57.698 50.000 0.00 0.00 31.07 6.53
41 42 1.827969 AGTTGTCTTATGAGAGCGGCT 59.172 47.619 0.00 0.00 31.07 5.52
42 43 3.024547 AGTTGTCTTATGAGAGCGGCTA 58.975 45.455 0.60 0.00 31.07 3.93
43 44 3.639094 AGTTGTCTTATGAGAGCGGCTAT 59.361 43.478 0.60 0.00 31.07 2.97
44 45 4.100189 AGTTGTCTTATGAGAGCGGCTATT 59.900 41.667 0.60 0.00 31.07 1.73
45 46 4.244425 TGTCTTATGAGAGCGGCTATTC 57.756 45.455 0.60 4.68 31.07 1.75
46 47 3.891977 TGTCTTATGAGAGCGGCTATTCT 59.108 43.478 0.60 0.00 31.07 2.40
47 48 5.070685 TGTCTTATGAGAGCGGCTATTCTA 58.929 41.667 0.60 0.00 31.07 2.10
48 49 5.535030 TGTCTTATGAGAGCGGCTATTCTAA 59.465 40.000 0.60 1.29 31.07 2.10
49 50 6.090129 GTCTTATGAGAGCGGCTATTCTAAG 58.910 44.000 0.60 10.97 31.07 2.18
50 51 2.802787 TGAGAGCGGCTATTCTAAGC 57.197 50.000 0.60 0.00 41.99 3.09
61 62 5.681337 GCTATTCTAAGCCCAAACTCATC 57.319 43.478 0.00 0.00 36.45 2.92
62 63 5.372373 GCTATTCTAAGCCCAAACTCATCT 58.628 41.667 0.00 0.00 36.45 2.90
63 64 6.525629 GCTATTCTAAGCCCAAACTCATCTA 58.474 40.000 0.00 0.00 36.45 1.98
64 65 7.164803 GCTATTCTAAGCCCAAACTCATCTAT 58.835 38.462 0.00 0.00 36.45 1.98
65 66 7.663493 GCTATTCTAAGCCCAAACTCATCTATT 59.337 37.037 0.00 0.00 36.45 1.73
66 67 9.566432 CTATTCTAAGCCCAAACTCATCTATTT 57.434 33.333 0.00 0.00 0.00 1.40
67 68 7.865706 TTCTAAGCCCAAACTCATCTATTTC 57.134 36.000 0.00 0.00 0.00 2.17
68 69 6.357367 TCTAAGCCCAAACTCATCTATTTCC 58.643 40.000 0.00 0.00 0.00 3.13
69 70 3.545703 AGCCCAAACTCATCTATTTCCG 58.454 45.455 0.00 0.00 0.00 4.30
70 71 3.054361 AGCCCAAACTCATCTATTTCCGT 60.054 43.478 0.00 0.00 0.00 4.69
71 72 3.065371 GCCCAAACTCATCTATTTCCGTG 59.935 47.826 0.00 0.00 0.00 4.94
72 73 4.261801 CCCAAACTCATCTATTTCCGTGT 58.738 43.478 0.00 0.00 0.00 4.49
73 74 4.094887 CCCAAACTCATCTATTTCCGTGTG 59.905 45.833 0.00 0.00 0.00 3.82
74 75 4.695455 CCAAACTCATCTATTTCCGTGTGT 59.305 41.667 0.00 0.00 0.00 3.72
75 76 5.390885 CCAAACTCATCTATTTCCGTGTGTG 60.391 44.000 0.00 0.00 0.00 3.82
76 77 4.801330 ACTCATCTATTTCCGTGTGTGA 57.199 40.909 0.00 0.00 0.00 3.58
77 78 5.147330 ACTCATCTATTTCCGTGTGTGAA 57.853 39.130 0.00 0.00 0.00 3.18
78 79 4.929808 ACTCATCTATTTCCGTGTGTGAAC 59.070 41.667 0.00 0.00 0.00 3.18
79 80 4.888917 TCATCTATTTCCGTGTGTGAACA 58.111 39.130 0.00 0.00 0.00 3.18
80 81 4.929211 TCATCTATTTCCGTGTGTGAACAG 59.071 41.667 0.00 0.00 0.00 3.16
81 82 4.330944 TCTATTTCCGTGTGTGAACAGT 57.669 40.909 0.00 0.00 0.00 3.55
82 83 5.456548 TCTATTTCCGTGTGTGAACAGTA 57.543 39.130 0.00 0.00 0.00 2.74
83 84 5.845103 TCTATTTCCGTGTGTGAACAGTAA 58.155 37.500 0.00 0.00 0.00 2.24
84 85 6.282167 TCTATTTCCGTGTGTGAACAGTAAA 58.718 36.000 0.00 0.00 0.00 2.01
85 86 6.932400 TCTATTTCCGTGTGTGAACAGTAAAT 59.068 34.615 0.00 0.00 0.00 1.40
86 87 5.821516 TTTCCGTGTGTGAACAGTAAATT 57.178 34.783 0.00 0.00 0.00 1.82
87 88 5.412526 TTCCGTGTGTGAACAGTAAATTC 57.587 39.130 0.00 0.00 0.00 2.17
88 89 4.699637 TCCGTGTGTGAACAGTAAATTCT 58.300 39.130 0.00 0.00 0.00 2.40
89 90 5.120399 TCCGTGTGTGAACAGTAAATTCTT 58.880 37.500 0.00 0.00 0.00 2.52
90 91 6.282167 TCCGTGTGTGAACAGTAAATTCTTA 58.718 36.000 0.00 0.00 0.00 2.10
91 92 6.762187 TCCGTGTGTGAACAGTAAATTCTTAA 59.238 34.615 0.00 0.00 0.00 1.85
92 93 7.042321 TCCGTGTGTGAACAGTAAATTCTTAAG 60.042 37.037 0.00 0.00 0.00 1.85
93 94 7.042321 CCGTGTGTGAACAGTAAATTCTTAAGA 60.042 37.037 0.00 0.00 0.00 2.10
94 95 8.332464 CGTGTGTGAACAGTAAATTCTTAAGAA 58.668 33.333 19.83 19.83 38.56 2.52
95 96 9.651718 GTGTGTGAACAGTAAATTCTTAAGAAG 57.348 33.333 21.75 10.48 37.48 2.85
96 97 9.607988 TGTGTGAACAGTAAATTCTTAAGAAGA 57.392 29.630 21.75 8.32 37.48 2.87
150 151 7.821595 TTTACAGTCATAATGGTTGAGTACG 57.178 36.000 0.00 0.00 0.00 3.67
151 152 4.181578 ACAGTCATAATGGTTGAGTACGC 58.818 43.478 0.00 0.00 0.00 4.42
152 153 4.180817 CAGTCATAATGGTTGAGTACGCA 58.819 43.478 0.00 0.00 0.00 5.24
153 154 4.629634 CAGTCATAATGGTTGAGTACGCAA 59.370 41.667 8.05 8.05 0.00 4.85
155 156 4.034048 GTCATAATGGTTGAGTACGCAAGG 59.966 45.833 12.62 0.00 46.39 3.61
156 157 2.561478 AATGGTTGAGTACGCAAGGT 57.439 45.000 12.62 0.00 46.39 3.50
157 158 1.808411 ATGGTTGAGTACGCAAGGTG 58.192 50.000 12.62 0.00 46.39 4.00
158 159 0.882927 TGGTTGAGTACGCAAGGTGC 60.883 55.000 12.62 0.86 46.39 5.01
159 160 0.882927 GGTTGAGTACGCAAGGTGCA 60.883 55.000 12.62 0.00 45.36 4.57
160 161 1.156736 GTTGAGTACGCAAGGTGCAT 58.843 50.000 12.62 0.00 45.36 3.96
161 162 1.135972 GTTGAGTACGCAAGGTGCATG 60.136 52.381 12.62 0.00 45.36 4.06
162 163 1.298157 TGAGTACGCAAGGTGCATGC 61.298 55.000 11.82 11.82 45.36 4.06
163 164 1.298157 GAGTACGCAAGGTGCATGCA 61.298 55.000 18.46 18.46 45.36 3.96
164 165 0.888736 AGTACGCAAGGTGCATGCAA 60.889 50.000 24.58 3.50 45.36 4.08
165 166 0.039617 GTACGCAAGGTGCATGCAAA 60.040 50.000 24.58 0.00 45.36 3.68
166 167 0.887247 TACGCAAGGTGCATGCAAAT 59.113 45.000 24.58 11.35 45.36 2.32
167 168 0.033781 ACGCAAGGTGCATGCAAATT 59.966 45.000 24.58 17.10 45.36 1.82
168 169 0.717224 CGCAAGGTGCATGCAAATTC 59.283 50.000 24.58 9.96 45.36 2.17
169 170 1.670674 CGCAAGGTGCATGCAAATTCT 60.671 47.619 24.58 14.47 45.36 2.40
170 171 2.419667 GCAAGGTGCATGCAAATTCTT 58.580 42.857 24.58 19.22 44.26 2.52
171 172 3.587923 GCAAGGTGCATGCAAATTCTTA 58.412 40.909 24.58 0.00 44.26 2.10
172 173 4.186159 GCAAGGTGCATGCAAATTCTTAT 58.814 39.130 24.58 1.32 44.26 1.73
173 174 4.033587 GCAAGGTGCATGCAAATTCTTATG 59.966 41.667 24.58 13.65 44.26 1.90
174 175 4.395959 AGGTGCATGCAAATTCTTATGG 57.604 40.909 24.58 0.00 0.00 2.74
175 176 3.770933 AGGTGCATGCAAATTCTTATGGT 59.229 39.130 24.58 0.00 0.00 3.55
176 177 3.866910 GGTGCATGCAAATTCTTATGGTG 59.133 43.478 24.58 0.00 0.00 4.17
177 178 4.497300 GTGCATGCAAATTCTTATGGTGT 58.503 39.130 24.58 0.00 0.00 4.16
178 179 4.563976 GTGCATGCAAATTCTTATGGTGTC 59.436 41.667 24.58 0.00 0.00 3.67
179 180 4.220163 TGCATGCAAATTCTTATGGTGTCA 59.780 37.500 20.30 0.00 0.00 3.58
180 181 4.563976 GCATGCAAATTCTTATGGTGTCAC 59.436 41.667 14.21 0.00 0.00 3.67
181 182 4.418013 TGCAAATTCTTATGGTGTCACG 57.582 40.909 0.00 0.00 0.00 4.35
182 183 4.068599 TGCAAATTCTTATGGTGTCACGA 58.931 39.130 0.00 0.00 0.00 4.35
183 184 4.083537 TGCAAATTCTTATGGTGTCACGAC 60.084 41.667 0.00 0.00 0.00 4.34
184 185 4.083537 GCAAATTCTTATGGTGTCACGACA 60.084 41.667 0.00 0.00 39.32 4.35
185 186 5.391950 GCAAATTCTTATGGTGTCACGACAT 60.392 40.000 2.72 0.00 43.97 3.06
186 187 6.611381 CAAATTCTTATGGTGTCACGACATT 58.389 36.000 2.72 0.00 43.97 2.71
187 188 6.422776 AATTCTTATGGTGTCACGACATTC 57.577 37.500 2.72 0.42 43.97 2.67
188 189 4.529109 TCTTATGGTGTCACGACATTCA 57.471 40.909 2.72 5.98 43.97 2.57
189 190 4.888917 TCTTATGGTGTCACGACATTCAA 58.111 39.130 2.72 0.00 43.97 2.69
190 191 5.487433 TCTTATGGTGTCACGACATTCAAT 58.513 37.500 2.72 0.00 43.97 2.57
191 192 5.351189 TCTTATGGTGTCACGACATTCAATG 59.649 40.000 2.72 0.00 43.97 2.82
192 193 3.118905 TGGTGTCACGACATTCAATGA 57.881 42.857 3.79 0.00 43.97 2.57
193 194 3.066380 TGGTGTCACGACATTCAATGAG 58.934 45.455 3.79 0.13 43.97 2.90
194 195 2.416547 GGTGTCACGACATTCAATGAGG 59.583 50.000 3.79 0.00 43.97 3.86
195 196 3.067106 GTGTCACGACATTCAATGAGGT 58.933 45.455 3.79 0.00 43.97 3.85
196 197 3.123621 GTGTCACGACATTCAATGAGGTC 59.876 47.826 3.79 6.96 43.97 3.85
200 201 1.583856 CGACATTCAATGAGGTCGTCG 59.416 52.381 22.58 16.47 45.73 5.12
201 202 1.927174 GACATTCAATGAGGTCGTCGG 59.073 52.381 3.79 0.00 0.00 4.79
202 203 1.548719 ACATTCAATGAGGTCGTCGGA 59.451 47.619 3.79 0.00 0.00 4.55
203 204 2.028476 ACATTCAATGAGGTCGTCGGAA 60.028 45.455 3.79 0.00 0.00 4.30
204 205 2.823924 TTCAATGAGGTCGTCGGAAA 57.176 45.000 0.00 0.00 0.00 3.13
205 206 2.823924 TCAATGAGGTCGTCGGAAAA 57.176 45.000 0.00 0.00 0.00 2.29
206 207 3.114668 TCAATGAGGTCGTCGGAAAAA 57.885 42.857 0.00 0.00 0.00 1.94
280 281 9.913310 TTTTTGTTATTTTCCCTGAATTTCCTT 57.087 25.926 0.00 0.00 0.00 3.36
281 282 9.913310 TTTTGTTATTTTCCCTGAATTTCCTTT 57.087 25.926 0.00 0.00 0.00 3.11
282 283 9.913310 TTTGTTATTTTCCCTGAATTTCCTTTT 57.087 25.926 0.00 0.00 0.00 2.27
283 284 9.913310 TTGTTATTTTCCCTGAATTTCCTTTTT 57.087 25.926 0.00 0.00 0.00 1.94
284 285 9.336171 TGTTATTTTCCCTGAATTTCCTTTTTG 57.664 29.630 0.00 0.00 0.00 2.44
285 286 8.783093 GTTATTTTCCCTGAATTTCCTTTTTGG 58.217 33.333 0.00 0.00 37.10 3.28
286 287 4.350368 TTCCCTGAATTTCCTTTTTGGC 57.650 40.909 0.00 0.00 35.26 4.52
287 288 3.312890 TCCCTGAATTTCCTTTTTGGCA 58.687 40.909 0.00 0.00 35.26 4.92
288 289 3.713764 TCCCTGAATTTCCTTTTTGGCAA 59.286 39.130 0.00 0.00 35.26 4.52
289 290 4.164988 TCCCTGAATTTCCTTTTTGGCAAA 59.835 37.500 8.93 8.93 35.26 3.68
290 291 4.275689 CCCTGAATTTCCTTTTTGGCAAAC 59.724 41.667 13.10 0.00 35.26 2.93
291 292 4.880696 CCTGAATTTCCTTTTTGGCAAACA 59.119 37.500 13.10 5.27 35.26 2.83
292 293 5.356470 CCTGAATTTCCTTTTTGGCAAACAA 59.644 36.000 13.10 9.37 37.28 2.83
293 294 6.127786 CCTGAATTTCCTTTTTGGCAAACAAA 60.128 34.615 13.10 9.62 46.82 2.83
304 305 2.283799 GCAAACAAAATCTTGCGTGC 57.716 45.000 0.00 0.00 38.66 5.34
305 306 1.860326 GCAAACAAAATCTTGCGTGCT 59.140 42.857 1.08 0.00 40.22 4.40
306 307 2.097250 GCAAACAAAATCTTGCGTGCTC 60.097 45.455 1.08 0.00 40.22 4.26
307 308 3.374745 CAAACAAAATCTTGCGTGCTCT 58.625 40.909 0.00 0.00 35.84 4.09
308 309 3.715628 AACAAAATCTTGCGTGCTCTT 57.284 38.095 0.00 0.00 35.84 2.85
309 310 4.829064 AACAAAATCTTGCGTGCTCTTA 57.171 36.364 0.00 0.00 35.84 2.10
310 311 4.410492 ACAAAATCTTGCGTGCTCTTAG 57.590 40.909 0.00 0.00 35.84 2.18
311 312 4.065088 ACAAAATCTTGCGTGCTCTTAGA 58.935 39.130 0.00 0.00 35.84 2.10
312 313 4.515191 ACAAAATCTTGCGTGCTCTTAGAA 59.485 37.500 0.00 0.00 35.84 2.10
313 314 5.008613 ACAAAATCTTGCGTGCTCTTAGAAA 59.991 36.000 0.00 0.00 35.84 2.52
314 315 5.689383 AAATCTTGCGTGCTCTTAGAAAA 57.311 34.783 0.00 0.00 0.00 2.29
315 316 4.670227 ATCTTGCGTGCTCTTAGAAAAC 57.330 40.909 0.00 0.00 0.00 2.43
316 317 3.728845 TCTTGCGTGCTCTTAGAAAACT 58.271 40.909 0.00 0.00 0.00 2.66
317 318 3.741344 TCTTGCGTGCTCTTAGAAAACTC 59.259 43.478 0.00 0.00 0.00 3.01
318 319 3.106242 TGCGTGCTCTTAGAAAACTCA 57.894 42.857 0.00 0.00 0.00 3.41
319 320 3.462982 TGCGTGCTCTTAGAAAACTCAA 58.537 40.909 0.00 0.00 0.00 3.02
320 321 3.494626 TGCGTGCTCTTAGAAAACTCAAG 59.505 43.478 0.00 0.00 0.00 3.02
321 322 3.495001 GCGTGCTCTTAGAAAACTCAAGT 59.505 43.478 0.00 0.00 0.00 3.16
322 323 4.684703 GCGTGCTCTTAGAAAACTCAAGTA 59.315 41.667 0.00 0.00 0.00 2.24
323 324 5.348997 GCGTGCTCTTAGAAAACTCAAGTAT 59.651 40.000 0.00 0.00 0.00 2.12
324 325 6.454450 GCGTGCTCTTAGAAAACTCAAGTATC 60.454 42.308 0.00 0.00 0.00 2.24
325 326 6.035112 CGTGCTCTTAGAAAACTCAAGTATCC 59.965 42.308 0.00 0.00 0.00 2.59
326 327 7.100409 GTGCTCTTAGAAAACTCAAGTATCCT 58.900 38.462 0.00 0.00 0.00 3.24
327 328 7.064016 GTGCTCTTAGAAAACTCAAGTATCCTG 59.936 40.741 0.00 0.00 0.00 3.86
328 329 6.536941 GCTCTTAGAAAACTCAAGTATCCTGG 59.463 42.308 0.00 0.00 0.00 4.45
329 330 7.579723 GCTCTTAGAAAACTCAAGTATCCTGGA 60.580 40.741 0.00 0.00 0.00 3.86
330 331 8.380742 TCTTAGAAAACTCAAGTATCCTGGAT 57.619 34.615 14.66 14.66 0.00 3.41
331 332 8.260818 TCTTAGAAAACTCAAGTATCCTGGATG 58.739 37.037 19.42 4.00 0.00 3.51
332 333 6.380079 AGAAAACTCAAGTATCCTGGATGT 57.620 37.500 19.42 4.41 0.00 3.06
333 334 6.410540 AGAAAACTCAAGTATCCTGGATGTC 58.589 40.000 19.42 11.71 0.00 3.06
334 335 5.762179 AAACTCAAGTATCCTGGATGTCA 57.238 39.130 19.42 0.00 0.00 3.58
335 336 4.744795 ACTCAAGTATCCTGGATGTCAC 57.255 45.455 19.42 9.54 0.00 3.67
336 337 4.096681 ACTCAAGTATCCTGGATGTCACA 58.903 43.478 19.42 0.00 0.00 3.58
337 338 4.532126 ACTCAAGTATCCTGGATGTCACAA 59.468 41.667 19.42 0.00 0.00 3.33
338 339 5.013079 ACTCAAGTATCCTGGATGTCACAAA 59.987 40.000 19.42 0.00 0.00 2.83
339 340 5.875224 TCAAGTATCCTGGATGTCACAAAA 58.125 37.500 19.42 0.00 0.00 2.44
340 341 6.303054 TCAAGTATCCTGGATGTCACAAAAA 58.697 36.000 19.42 0.00 0.00 1.94
341 342 6.947733 TCAAGTATCCTGGATGTCACAAAAAT 59.052 34.615 19.42 0.00 0.00 1.82
342 343 7.451255 TCAAGTATCCTGGATGTCACAAAAATT 59.549 33.333 19.42 0.00 0.00 1.82
343 344 7.781324 AGTATCCTGGATGTCACAAAAATTT 57.219 32.000 19.42 0.00 0.00 1.82
344 345 8.877864 AGTATCCTGGATGTCACAAAAATTTA 57.122 30.769 19.42 0.00 0.00 1.40
345 346 8.960591 AGTATCCTGGATGTCACAAAAATTTAG 58.039 33.333 19.42 0.00 0.00 1.85
346 347 8.956426 GTATCCTGGATGTCACAAAAATTTAGA 58.044 33.333 19.42 0.00 0.00 2.10
347 348 7.831691 TCCTGGATGTCACAAAAATTTAGAA 57.168 32.000 0.00 0.00 0.00 2.10
348 349 8.421249 TCCTGGATGTCACAAAAATTTAGAAT 57.579 30.769 0.00 0.00 0.00 2.40
349 350 8.522830 TCCTGGATGTCACAAAAATTTAGAATC 58.477 33.333 0.00 0.00 0.00 2.52
350 351 8.526147 CCTGGATGTCACAAAAATTTAGAATCT 58.474 33.333 0.00 0.00 0.00 2.40
351 352 9.918630 CTGGATGTCACAAAAATTTAGAATCTT 57.081 29.630 0.00 0.00 0.00 2.40
397 398 9.982651 TTCCCTGAATTTACTATTAATCGAGAG 57.017 33.333 0.00 0.00 0.00 3.20
398 399 8.088981 TCCCTGAATTTACTATTAATCGAGAGC 58.911 37.037 0.00 0.00 0.00 4.09
399 400 7.872993 CCCTGAATTTACTATTAATCGAGAGCA 59.127 37.037 0.00 0.00 0.00 4.26
400 401 9.429359 CCTGAATTTACTATTAATCGAGAGCAT 57.571 33.333 0.00 0.00 0.00 3.79
420 421 5.011533 AGCATCTGACCCATATTCAGTAGTC 59.988 44.000 3.43 0.00 41.22 2.59
447 448 1.480954 TCTTGCTCGGTATTCCCACTC 59.519 52.381 0.00 0.00 0.00 3.51
454 455 4.833390 CTCGGTATTCCCACTCTTTTTCT 58.167 43.478 0.00 0.00 0.00 2.52
499 500 2.224354 TGCTGCAGACTGTCTCATTTCA 60.224 45.455 20.43 0.00 0.00 2.69
663 668 1.136891 GAAATTGGTAGCCATGCCACC 59.863 52.381 0.00 0.00 41.40 4.61
695 700 2.899303 AAAAGATTCCCACCCACGAT 57.101 45.000 0.00 0.00 0.00 3.73
722 728 5.474532 ACTCACTACGTGTACAATCTTGGTA 59.525 40.000 0.00 0.00 34.79 3.25
733 739 9.394477 GTGTACAATCTTGGTAATCAAAAGTTC 57.606 33.333 0.00 0.00 34.56 3.01
742 748 9.364989 CTTGGTAATCAAAAGTTCAGAACAAAA 57.635 29.630 15.85 0.00 34.56 2.44
768 774 5.982890 AAAATCCCAACCACTATGAACTG 57.017 39.130 0.00 0.00 0.00 3.16
787 793 2.398554 CGCCGTCCATCAACCCAAG 61.399 63.158 0.00 0.00 0.00 3.61
809 815 1.346395 TGCTAAGCGAAGAACTTCCCA 59.654 47.619 8.66 0.00 36.27 4.37
830 836 1.039068 ACTCCCTGATCTGCATCTCG 58.961 55.000 0.00 0.00 0.00 4.04
907 913 6.273260 AGTGGTGGCCATAGTATATCATCTTT 59.727 38.462 9.72 0.00 35.28 2.52
931 937 4.696479 ACAAATAGCCCCAGTATCTCAG 57.304 45.455 0.00 0.00 0.00 3.35
933 939 4.910304 ACAAATAGCCCCAGTATCTCAGAT 59.090 41.667 0.00 0.00 0.00 2.90
934 940 5.370880 ACAAATAGCCCCAGTATCTCAGATT 59.629 40.000 0.00 0.00 0.00 2.40
935 941 5.753721 AATAGCCCCAGTATCTCAGATTC 57.246 43.478 0.00 0.00 0.00 2.52
945 951 7.396907 CCCAGTATCTCAGATTCACAGATATCT 59.603 40.741 0.00 0.00 32.91 1.98
992 1000 2.720758 CTAGCGCGCACACACAGTC 61.721 63.158 35.10 0.00 0.00 3.51
1006 1014 2.289694 ACACAGTCACTTACCATGGCTC 60.290 50.000 13.04 0.00 26.46 4.70
1008 1016 1.278985 CAGTCACTTACCATGGCTCCA 59.721 52.381 13.04 0.00 26.46 3.86
1009 1017 1.556911 AGTCACTTACCATGGCTCCAG 59.443 52.381 13.04 5.06 0.00 3.86
1128 1136 2.031516 CACACCAGCTCAGCCTTCG 61.032 63.158 0.00 0.00 0.00 3.79
1131 1139 2.507992 CCAGCTCAGCCTTCGACG 60.508 66.667 0.00 0.00 0.00 5.12
1146 1154 2.281276 ACGCCGGAAGTTCCAACC 60.281 61.111 21.76 7.89 35.91 3.77
1156 1164 2.086610 AGTTCCAACCACATTGCCTT 57.913 45.000 0.00 0.00 36.93 4.35
1161 1169 2.971330 TCCAACCACATTGCCTTCAATT 59.029 40.909 0.00 0.00 40.74 2.32
1188 1196 0.601841 TTCCCGCAGTTCCGAAACTC 60.602 55.000 0.00 0.00 43.99 3.01
1197 1205 1.606668 GTTCCGAAACTCACAATGCCA 59.393 47.619 0.00 0.00 32.36 4.92
1215 1223 1.668751 CCACCAATACCGTTCATTCCG 59.331 52.381 0.00 0.00 0.00 4.30
1339 1347 1.078891 ATGCCACCAATGCCCTCAA 59.921 52.632 0.00 0.00 0.00 3.02
1346 1354 1.901833 ACCAATGCCCTCAATTCCAAC 59.098 47.619 0.00 0.00 0.00 3.77
1349 1357 3.962718 CCAATGCCCTCAATTCCAACTAT 59.037 43.478 0.00 0.00 0.00 2.12
1350 1358 4.406649 CCAATGCCCTCAATTCCAACTATT 59.593 41.667 0.00 0.00 0.00 1.73
1362 1370 9.300681 TCAATTCCAACTATTATTCCATCCATC 57.699 33.333 0.00 0.00 0.00 3.51
1386 1394 5.007626 CCCGATCACAATACCAACAACTATG 59.992 44.000 0.00 0.00 0.00 2.23
1441 1449 0.921896 ATTCATGTCCCCACCTCCAG 59.078 55.000 0.00 0.00 0.00 3.86
1464 1472 1.379916 CACCAGCCCATGAAGGTCA 59.620 57.895 0.00 0.00 34.66 4.02
1509 1517 4.938832 CAGGGGTTTGATTCGTACACATAA 59.061 41.667 0.00 0.00 0.00 1.90
1542 1551 9.347934 CAGTGTGTTTGTAATGTTTTTGTTCTA 57.652 29.630 0.00 0.00 0.00 2.10
1698 1707 4.837093 TTTTGAATGATACTCCCTCCGT 57.163 40.909 0.00 0.00 0.00 4.69
1699 1708 4.837093 TTTGAATGATACTCCCTCCGTT 57.163 40.909 0.00 0.00 0.00 4.44
1700 1709 4.402056 TTGAATGATACTCCCTCCGTTC 57.598 45.455 0.00 0.00 0.00 3.95
1701 1710 2.698797 TGAATGATACTCCCTCCGTTCC 59.301 50.000 0.00 0.00 0.00 3.62
1702 1711 2.777459 ATGATACTCCCTCCGTTCCT 57.223 50.000 0.00 0.00 0.00 3.36
1703 1712 3.897657 ATGATACTCCCTCCGTTCCTA 57.102 47.619 0.00 0.00 0.00 2.94
1704 1713 3.675348 TGATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
1705 1714 3.985127 TGATACTCCCTCCGTTCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
1706 1715 4.553678 TGATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
1707 1716 5.708544 TGATACTCCCTCCGTTCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
1708 1717 6.320518 TGATACTCCCTCCGTTCCTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
1709 1718 7.472741 TGATACTCCCTCCGTTCCTAAATATA 58.527 38.462 0.00 0.00 0.00 0.86
1710 1719 7.951806 TGATACTCCCTCCGTTCCTAAATATAA 59.048 37.037 0.00 0.00 0.00 0.98
1711 1720 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1712 1721 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1713 1722 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1714 1723 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1715 1724 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1716 1725 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1717 1726 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1718 1727 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1745 1754 9.698309 AGAGATTCCAATAAATGACTACATACG 57.302 33.333 0.00 0.00 35.50 3.06
1746 1755 8.833231 AGATTCCAATAAATGACTACATACGG 57.167 34.615 0.00 0.00 35.50 4.02
1747 1756 8.647796 AGATTCCAATAAATGACTACATACGGA 58.352 33.333 0.00 0.00 35.50 4.69
1748 1757 9.268268 GATTCCAATAAATGACTACATACGGAA 57.732 33.333 0.00 0.00 35.50 4.30
1749 1758 8.428186 TTCCAATAAATGACTACATACGGAAC 57.572 34.615 0.00 0.00 35.50 3.62
1750 1759 7.557724 TCCAATAAATGACTACATACGGAACA 58.442 34.615 0.00 0.00 35.50 3.18
1751 1760 8.041919 TCCAATAAATGACTACATACGGAACAA 58.958 33.333 0.00 0.00 35.50 2.83
1752 1761 8.670135 CCAATAAATGACTACATACGGAACAAA 58.330 33.333 0.00 0.00 35.50 2.83
1756 1765 7.915293 AATGACTACATACGGAACAAAATGA 57.085 32.000 0.00 0.00 35.50 2.57
1757 1766 6.961359 TGACTACATACGGAACAAAATGAG 57.039 37.500 0.00 0.00 0.00 2.90
1758 1767 6.460781 TGACTACATACGGAACAAAATGAGT 58.539 36.000 0.00 0.00 0.00 3.41
1759 1768 6.367695 TGACTACATACGGAACAAAATGAGTG 59.632 38.462 0.00 0.00 0.00 3.51
1760 1769 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
1761 1770 6.932400 ACTACATACGGAACAAAATGAGTGAA 59.068 34.615 0.00 0.00 0.00 3.18
1762 1771 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
1763 1772 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
1764 1773 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
1765 1774 7.822334 ACATACGGAACAAAATGAGTGAATCTA 59.178 33.333 0.00 0.00 0.00 1.98
1766 1775 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
1767 1776 5.995282 ACGGAACAAAATGAGTGAATCTACA 59.005 36.000 0.00 0.00 0.00 2.74
1768 1777 6.073222 ACGGAACAAAATGAGTGAATCTACAC 60.073 38.462 0.00 0.00 40.60 2.90
1809 1818 5.707242 ACATCCGTATGTAGTCCATAGTG 57.293 43.478 0.00 0.00 44.66 2.74
1810 1819 4.523173 ACATCCGTATGTAGTCCATAGTGG 59.477 45.833 0.00 0.00 44.66 4.00
1811 1820 4.442401 TCCGTATGTAGTCCATAGTGGA 57.558 45.455 0.00 0.00 45.98 4.02
1812 1821 7.143487 ACATCCGTATGTAGTCCATAGTGGAA 61.143 42.308 0.00 0.00 45.76 3.53
1813 1822 8.401784 ACATCCGTATGTAGTCCATAGTGGAAT 61.402 40.741 4.27 4.27 45.76 3.01
1845 1854 9.503399 AAAATACTTATATTTAGAAGCGGAGGG 57.497 33.333 0.00 0.00 39.61 4.30
1846 1855 8.431910 AATACTTATATTTAGAAGCGGAGGGA 57.568 34.615 0.00 0.00 0.00 4.20
1883 1892 7.377928 GTCAACTGTCAACAGAAAAGAATGATG 59.622 37.037 16.71 1.32 46.59 3.07
1972 2034 7.149569 TGACAGAAAGGAAAGATAGCATTTG 57.850 36.000 0.00 0.00 0.00 2.32
1973 2035 6.716628 TGACAGAAAGGAAAGATAGCATTTGT 59.283 34.615 0.00 0.00 0.00 2.83
2028 2090 5.801947 GCATTAACTGAATAAACACCAGCAG 59.198 40.000 0.00 0.00 0.00 4.24
2057 2119 3.367498 GGCACGGCATGTTAATTTACCAA 60.367 43.478 0.00 0.00 0.00 3.67
2070 2133 9.237187 TGTTAATTTACCAAGACATGCTTATGA 57.763 29.630 0.00 0.00 34.31 2.15
2079 2142 7.148188 ACCAAGACATGCTTATGACAAGTATTG 60.148 37.037 0.00 0.00 43.55 1.90
2101 2164 4.709886 TGGCTAGATGTAAGCTTCAGTGTA 59.290 41.667 0.00 0.00 39.97 2.90
2189 2260 2.938956 ACTCCTGGACTTCCAAACAG 57.061 50.000 0.00 0.00 46.97 3.16
2271 2353 5.068636 ACTGACACATTGAAGCAAGAGATT 58.931 37.500 0.00 0.00 0.00 2.40
2308 2392 6.431198 AACGGTGATAACAAACATGGATAC 57.569 37.500 0.00 0.00 0.00 2.24
2366 2450 9.816354 AGCACTAACACAGAATAACAAAATTTT 57.184 25.926 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.018490 ACAACTTCATCTTATGCCATGCA 58.982 39.130 0.00 0.00 44.86 3.96
5 6 4.337555 AGACAACTTCATCTTATGCCATGC 59.662 41.667 0.00 0.00 0.00 4.06
6 7 6.446781 AAGACAACTTCATCTTATGCCATG 57.553 37.500 0.00 0.00 33.35 3.66
12 13 7.651304 CGCTCTCATAAGACAACTTCATCTTAT 59.349 37.037 1.52 1.52 45.05 1.73
13 14 6.975197 CGCTCTCATAAGACAACTTCATCTTA 59.025 38.462 0.00 0.00 40.70 2.10
14 15 5.809562 CGCTCTCATAAGACAACTTCATCTT 59.190 40.000 0.00 0.00 38.67 2.40
15 16 5.347342 CGCTCTCATAAGACAACTTCATCT 58.653 41.667 0.00 0.00 37.53 2.90
16 17 4.505922 CCGCTCTCATAAGACAACTTCATC 59.494 45.833 0.00 0.00 37.53 2.92
17 18 4.437239 CCGCTCTCATAAGACAACTTCAT 58.563 43.478 0.00 0.00 37.53 2.57
18 19 3.849911 CCGCTCTCATAAGACAACTTCA 58.150 45.455 0.00 0.00 37.53 3.02
19 20 2.605366 GCCGCTCTCATAAGACAACTTC 59.395 50.000 0.00 0.00 37.53 3.01
20 21 2.234908 AGCCGCTCTCATAAGACAACTT 59.765 45.455 0.00 0.00 39.81 2.66
21 22 1.827969 AGCCGCTCTCATAAGACAACT 59.172 47.619 0.00 0.00 0.00 3.16
22 23 2.301577 AGCCGCTCTCATAAGACAAC 57.698 50.000 0.00 0.00 0.00 3.32
23 24 4.342378 AGAATAGCCGCTCTCATAAGACAA 59.658 41.667 0.00 0.00 0.00 3.18
24 25 3.891977 AGAATAGCCGCTCTCATAAGACA 59.108 43.478 0.00 0.00 0.00 3.41
25 26 4.513198 AGAATAGCCGCTCTCATAAGAC 57.487 45.455 0.00 0.00 0.00 3.01
26 27 5.336055 GCTTAGAATAGCCGCTCTCATAAGA 60.336 44.000 14.73 0.00 35.06 2.10
27 28 4.862018 GCTTAGAATAGCCGCTCTCATAAG 59.138 45.833 0.00 3.83 35.06 1.73
28 29 4.810790 GCTTAGAATAGCCGCTCTCATAA 58.189 43.478 0.00 0.00 35.06 1.90
29 30 4.442375 GCTTAGAATAGCCGCTCTCATA 57.558 45.455 0.00 0.00 35.06 2.15
30 31 3.311486 GCTTAGAATAGCCGCTCTCAT 57.689 47.619 0.00 0.00 35.06 2.90
31 32 2.802787 GCTTAGAATAGCCGCTCTCA 57.197 50.000 0.00 0.00 35.06 3.27
39 40 5.372373 AGATGAGTTTGGGCTTAGAATAGC 58.628 41.667 0.00 0.00 40.48 2.97
40 41 9.566432 AAATAGATGAGTTTGGGCTTAGAATAG 57.434 33.333 0.00 0.00 0.00 1.73
41 42 9.561069 GAAATAGATGAGTTTGGGCTTAGAATA 57.439 33.333 0.00 0.00 0.00 1.75
42 43 7.503902 GGAAATAGATGAGTTTGGGCTTAGAAT 59.496 37.037 0.00 0.00 0.00 2.40
43 44 6.828785 GGAAATAGATGAGTTTGGGCTTAGAA 59.171 38.462 0.00 0.00 0.00 2.10
44 45 6.357367 GGAAATAGATGAGTTTGGGCTTAGA 58.643 40.000 0.00 0.00 0.00 2.10
45 46 5.237344 CGGAAATAGATGAGTTTGGGCTTAG 59.763 44.000 0.00 0.00 0.00 2.18
46 47 5.123227 CGGAAATAGATGAGTTTGGGCTTA 58.877 41.667 0.00 0.00 0.00 3.09
47 48 3.947834 CGGAAATAGATGAGTTTGGGCTT 59.052 43.478 0.00 0.00 0.00 4.35
48 49 3.054361 ACGGAAATAGATGAGTTTGGGCT 60.054 43.478 0.00 0.00 0.00 5.19
49 50 3.065371 CACGGAAATAGATGAGTTTGGGC 59.935 47.826 0.00 0.00 0.00 5.36
50 51 4.094887 CACACGGAAATAGATGAGTTTGGG 59.905 45.833 0.00 0.00 0.00 4.12
51 52 4.695455 ACACACGGAAATAGATGAGTTTGG 59.305 41.667 0.00 0.00 0.00 3.28
52 53 5.408299 TCACACACGGAAATAGATGAGTTTG 59.592 40.000 0.00 0.00 0.00 2.93
53 54 5.547465 TCACACACGGAAATAGATGAGTTT 58.453 37.500 0.00 0.00 0.00 2.66
54 55 5.147330 TCACACACGGAAATAGATGAGTT 57.853 39.130 0.00 0.00 0.00 3.01
55 56 4.801330 TCACACACGGAAATAGATGAGT 57.199 40.909 0.00 0.00 0.00 3.41
56 57 4.929211 TGTTCACACACGGAAATAGATGAG 59.071 41.667 0.00 0.00 0.00 2.90
57 58 4.888917 TGTTCACACACGGAAATAGATGA 58.111 39.130 0.00 0.00 0.00 2.92
58 59 4.690748 ACTGTTCACACACGGAAATAGATG 59.309 41.667 0.00 0.00 0.00 2.90
59 60 4.894784 ACTGTTCACACACGGAAATAGAT 58.105 39.130 0.00 0.00 0.00 1.98
60 61 4.330944 ACTGTTCACACACGGAAATAGA 57.669 40.909 0.00 0.00 0.00 1.98
61 62 6.533819 TTTACTGTTCACACACGGAAATAG 57.466 37.500 0.00 0.00 0.00 1.73
62 63 7.442969 AGAATTTACTGTTCACACACGGAAATA 59.557 33.333 0.00 0.00 30.50 1.40
63 64 6.262273 AGAATTTACTGTTCACACACGGAAAT 59.738 34.615 0.00 0.00 31.27 2.17
64 65 5.587043 AGAATTTACTGTTCACACACGGAAA 59.413 36.000 0.00 0.00 0.00 3.13
65 66 5.120399 AGAATTTACTGTTCACACACGGAA 58.880 37.500 0.00 0.00 0.00 4.30
66 67 4.699637 AGAATTTACTGTTCACACACGGA 58.300 39.130 0.00 0.00 0.00 4.69
67 68 5.418310 AAGAATTTACTGTTCACACACGG 57.582 39.130 0.00 0.00 0.00 4.94
68 69 7.847487 TCTTAAGAATTTACTGTTCACACACG 58.153 34.615 1.68 0.00 0.00 4.49
69 70 9.651718 CTTCTTAAGAATTTACTGTTCACACAC 57.348 33.333 18.02 0.00 33.01 3.82
70 71 9.607988 TCTTCTTAAGAATTTACTGTTCACACA 57.392 29.630 18.02 0.00 33.83 3.72
124 125 8.714179 CGTACTCAACCATTATGACTGTAAAAA 58.286 33.333 0.00 0.00 0.00 1.94
125 126 7.148540 GCGTACTCAACCATTATGACTGTAAAA 60.149 37.037 0.00 0.00 0.00 1.52
126 127 6.311935 GCGTACTCAACCATTATGACTGTAAA 59.688 38.462 0.00 0.00 0.00 2.01
127 128 5.808540 GCGTACTCAACCATTATGACTGTAA 59.191 40.000 0.00 0.00 0.00 2.41
128 129 5.105675 TGCGTACTCAACCATTATGACTGTA 60.106 40.000 0.00 0.00 0.00 2.74
129 130 4.181578 GCGTACTCAACCATTATGACTGT 58.818 43.478 0.00 0.00 0.00 3.55
130 131 4.180817 TGCGTACTCAACCATTATGACTG 58.819 43.478 0.00 0.00 0.00 3.51
131 132 4.465632 TGCGTACTCAACCATTATGACT 57.534 40.909 0.00 0.00 0.00 3.41
132 133 4.034048 CCTTGCGTACTCAACCATTATGAC 59.966 45.833 0.00 0.00 0.00 3.06
133 134 4.188462 CCTTGCGTACTCAACCATTATGA 58.812 43.478 0.00 0.00 0.00 2.15
134 135 3.938963 ACCTTGCGTACTCAACCATTATG 59.061 43.478 0.00 0.00 0.00 1.90
135 136 3.938963 CACCTTGCGTACTCAACCATTAT 59.061 43.478 0.00 0.00 0.00 1.28
136 137 3.331150 CACCTTGCGTACTCAACCATTA 58.669 45.455 0.00 0.00 0.00 1.90
137 138 2.151202 CACCTTGCGTACTCAACCATT 58.849 47.619 0.00 0.00 0.00 3.16
138 139 1.808411 CACCTTGCGTACTCAACCAT 58.192 50.000 0.00 0.00 0.00 3.55
139 140 0.882927 GCACCTTGCGTACTCAACCA 60.883 55.000 0.00 0.00 31.71 3.67
140 141 1.866925 GCACCTTGCGTACTCAACC 59.133 57.895 0.00 0.00 31.71 3.77
150 151 2.088950 AGAATTTGCATGCACCTTGC 57.911 45.000 22.58 6.73 45.29 4.01
151 152 4.569162 CCATAAGAATTTGCATGCACCTTG 59.431 41.667 22.58 10.70 0.00 3.61
152 153 4.223477 ACCATAAGAATTTGCATGCACCTT 59.777 37.500 22.58 21.10 0.00 3.50
153 154 3.770933 ACCATAAGAATTTGCATGCACCT 59.229 39.130 22.58 12.28 0.00 4.00
154 155 3.866910 CACCATAAGAATTTGCATGCACC 59.133 43.478 22.58 10.06 0.00 5.01
155 156 4.497300 ACACCATAAGAATTTGCATGCAC 58.503 39.130 22.58 9.12 0.00 4.57
156 157 4.220163 TGACACCATAAGAATTTGCATGCA 59.780 37.500 18.46 18.46 0.00 3.96
157 158 4.563976 GTGACACCATAAGAATTTGCATGC 59.436 41.667 11.82 11.82 0.00 4.06
158 159 4.794762 CGTGACACCATAAGAATTTGCATG 59.205 41.667 0.00 0.00 0.00 4.06
159 160 4.699735 TCGTGACACCATAAGAATTTGCAT 59.300 37.500 0.00 0.00 0.00 3.96
160 161 4.068599 TCGTGACACCATAAGAATTTGCA 58.931 39.130 0.00 0.00 0.00 4.08
161 162 4.083537 TGTCGTGACACCATAAGAATTTGC 60.084 41.667 0.00 0.00 36.21 3.68
162 163 5.605564 TGTCGTGACACCATAAGAATTTG 57.394 39.130 0.00 0.00 36.21 2.32
163 164 6.429692 TGAATGTCGTGACACCATAAGAATTT 59.570 34.615 4.57 0.00 45.05 1.82
164 165 5.937540 TGAATGTCGTGACACCATAAGAATT 59.062 36.000 4.57 0.00 45.05 2.17
165 166 5.487433 TGAATGTCGTGACACCATAAGAAT 58.513 37.500 4.57 0.00 45.05 2.40
166 167 4.888917 TGAATGTCGTGACACCATAAGAA 58.111 39.130 4.57 0.00 45.05 2.52
167 168 4.529109 TGAATGTCGTGACACCATAAGA 57.471 40.909 4.57 0.00 45.05 2.10
168 169 5.351189 TCATTGAATGTCGTGACACCATAAG 59.649 40.000 4.57 0.00 45.05 1.73
169 170 5.241662 TCATTGAATGTCGTGACACCATAA 58.758 37.500 4.57 0.00 45.05 1.90
170 171 4.826556 TCATTGAATGTCGTGACACCATA 58.173 39.130 4.57 0.00 45.05 2.74
171 172 3.673902 TCATTGAATGTCGTGACACCAT 58.326 40.909 4.57 0.00 45.05 3.55
172 173 3.066380 CTCATTGAATGTCGTGACACCA 58.934 45.455 4.57 4.03 45.05 4.17
173 174 2.416547 CCTCATTGAATGTCGTGACACC 59.583 50.000 4.57 1.39 45.05 4.16
174 175 3.067106 ACCTCATTGAATGTCGTGACAC 58.933 45.455 4.57 0.00 45.05 3.67
175 176 3.325870 GACCTCATTGAATGTCGTGACA 58.674 45.455 4.99 4.99 46.44 3.58
176 177 2.345641 CGACCTCATTGAATGTCGTGAC 59.654 50.000 21.35 0.00 44.00 3.67
177 178 2.606108 CGACCTCATTGAATGTCGTGA 58.394 47.619 21.35 0.00 44.00 4.35
181 182 1.927174 CCGACGACCTCATTGAATGTC 59.073 52.381 4.93 6.10 0.00 3.06
182 183 1.548719 TCCGACGACCTCATTGAATGT 59.451 47.619 4.93 0.00 0.00 2.71
183 184 2.293677 TCCGACGACCTCATTGAATG 57.706 50.000 0.00 0.00 0.00 2.67
184 185 3.328382 TTTCCGACGACCTCATTGAAT 57.672 42.857 0.00 0.00 0.00 2.57
185 186 2.823924 TTTCCGACGACCTCATTGAA 57.176 45.000 0.00 0.00 0.00 2.69
186 187 2.823924 TTTTCCGACGACCTCATTGA 57.176 45.000 0.00 0.00 0.00 2.57
254 255 9.913310 AAGGAAATTCAGGGAAAATAACAAAAA 57.087 25.926 0.00 0.00 0.00 1.94
255 256 9.913310 AAAGGAAATTCAGGGAAAATAACAAAA 57.087 25.926 0.00 0.00 0.00 2.44
256 257 9.913310 AAAAGGAAATTCAGGGAAAATAACAAA 57.087 25.926 0.00 0.00 0.00 2.83
257 258 9.913310 AAAAAGGAAATTCAGGGAAAATAACAA 57.087 25.926 0.00 0.00 0.00 2.83
258 259 9.336171 CAAAAAGGAAATTCAGGGAAAATAACA 57.664 29.630 0.00 0.00 0.00 2.41
259 260 8.783093 CCAAAAAGGAAATTCAGGGAAAATAAC 58.217 33.333 0.00 0.00 41.22 1.89
260 261 7.446931 GCCAAAAAGGAAATTCAGGGAAAATAA 59.553 33.333 0.00 0.00 41.22 1.40
261 262 6.939730 GCCAAAAAGGAAATTCAGGGAAAATA 59.060 34.615 0.00 0.00 41.22 1.40
262 263 5.769662 GCCAAAAAGGAAATTCAGGGAAAAT 59.230 36.000 0.00 0.00 41.22 1.82
263 264 5.129634 GCCAAAAAGGAAATTCAGGGAAAA 58.870 37.500 0.00 0.00 41.22 2.29
264 265 4.164988 TGCCAAAAAGGAAATTCAGGGAAA 59.835 37.500 0.00 0.00 41.22 3.13
265 266 3.713764 TGCCAAAAAGGAAATTCAGGGAA 59.286 39.130 0.00 0.00 41.22 3.97
266 267 3.312890 TGCCAAAAAGGAAATTCAGGGA 58.687 40.909 0.00 0.00 41.22 4.20
267 268 3.767902 TGCCAAAAAGGAAATTCAGGG 57.232 42.857 0.00 0.00 41.22 4.45
268 269 4.880696 TGTTTGCCAAAAAGGAAATTCAGG 59.119 37.500 0.00 0.00 41.22 3.86
269 270 6.434018 TTGTTTGCCAAAAAGGAAATTCAG 57.566 33.333 0.00 0.00 41.22 3.02
270 271 6.824305 TTTGTTTGCCAAAAAGGAAATTCA 57.176 29.167 0.00 0.00 40.05 2.57
281 282 3.063180 CACGCAAGATTTTGTTTGCCAAA 59.937 39.130 3.89 0.00 45.17 3.28
282 283 2.606725 CACGCAAGATTTTGTTTGCCAA 59.393 40.909 3.89 0.00 45.17 4.52
283 284 2.200067 CACGCAAGATTTTGTTTGCCA 58.800 42.857 3.89 0.00 45.17 4.92
284 285 1.070643 GCACGCAAGATTTTGTTTGCC 60.071 47.619 10.86 0.00 45.17 4.52
285 286 1.860326 AGCACGCAAGATTTTGTTTGC 59.140 42.857 12.97 12.97 44.67 3.68
286 287 3.374745 AGAGCACGCAAGATTTTGTTTG 58.625 40.909 0.00 0.00 43.62 2.93
287 288 3.715628 AGAGCACGCAAGATTTTGTTT 57.284 38.095 0.00 0.00 43.62 2.83
288 289 3.715628 AAGAGCACGCAAGATTTTGTT 57.284 38.095 0.00 0.00 43.62 2.83
289 290 4.065088 TCTAAGAGCACGCAAGATTTTGT 58.935 39.130 0.00 0.00 43.62 2.83
290 291 4.668576 TCTAAGAGCACGCAAGATTTTG 57.331 40.909 0.00 0.00 43.62 2.44
291 292 5.689383 TTTCTAAGAGCACGCAAGATTTT 57.311 34.783 0.00 0.00 43.62 1.82
292 293 5.239525 AGTTTTCTAAGAGCACGCAAGATTT 59.760 36.000 0.00 0.00 43.62 2.17
293 294 4.757149 AGTTTTCTAAGAGCACGCAAGATT 59.243 37.500 0.00 0.00 43.62 2.40
294 295 4.319177 AGTTTTCTAAGAGCACGCAAGAT 58.681 39.130 0.00 0.00 43.62 2.40
295 296 3.728845 AGTTTTCTAAGAGCACGCAAGA 58.271 40.909 0.00 0.00 43.62 3.02
296 297 5.837782 CTTGAGTTTTCTAAGAGCACGCAAG 60.838 44.000 8.76 8.76 38.39 4.01
297 298 3.462982 TGAGTTTTCTAAGAGCACGCAA 58.537 40.909 0.00 0.00 0.00 4.85
298 299 3.106242 TGAGTTTTCTAAGAGCACGCA 57.894 42.857 0.00 0.00 0.00 5.24
299 300 3.495001 ACTTGAGTTTTCTAAGAGCACGC 59.505 43.478 0.00 0.00 0.00 5.34
300 301 6.035112 GGATACTTGAGTTTTCTAAGAGCACG 59.965 42.308 0.00 0.00 0.00 5.34
301 302 7.297229 GGATACTTGAGTTTTCTAAGAGCAC 57.703 40.000 0.00 0.00 0.00 4.40
320 321 8.956426 TCTAAATTTTTGTGACATCCAGGATAC 58.044 33.333 0.00 0.00 0.00 2.24
321 322 9.527157 TTCTAAATTTTTGTGACATCCAGGATA 57.473 29.630 0.00 0.00 0.00 2.59
322 323 8.421249 TTCTAAATTTTTGTGACATCCAGGAT 57.579 30.769 0.00 0.00 0.00 3.24
323 324 7.831691 TTCTAAATTTTTGTGACATCCAGGA 57.168 32.000 0.00 0.00 0.00 3.86
324 325 8.526147 AGATTCTAAATTTTTGTGACATCCAGG 58.474 33.333 0.00 0.00 0.00 4.45
325 326 9.918630 AAGATTCTAAATTTTTGTGACATCCAG 57.081 29.630 0.00 0.00 0.00 3.86
371 372 9.982651 CTCTCGATTAATAGTAAATTCAGGGAA 57.017 33.333 0.00 0.00 0.00 3.97
372 373 8.088981 GCTCTCGATTAATAGTAAATTCAGGGA 58.911 37.037 0.00 0.00 0.00 4.20
373 374 7.872993 TGCTCTCGATTAATAGTAAATTCAGGG 59.127 37.037 0.00 0.00 0.00 4.45
374 375 8.818141 TGCTCTCGATTAATAGTAAATTCAGG 57.182 34.615 0.00 0.00 0.00 3.86
379 380 9.632807 GTCAGATGCTCTCGATTAATAGTAAAT 57.367 33.333 0.00 0.00 0.00 1.40
380 381 8.082852 GGTCAGATGCTCTCGATTAATAGTAAA 58.917 37.037 0.00 0.00 0.00 2.01
381 382 7.309255 GGGTCAGATGCTCTCGATTAATAGTAA 60.309 40.741 0.00 0.00 0.00 2.24
382 383 6.151312 GGGTCAGATGCTCTCGATTAATAGTA 59.849 42.308 0.00 0.00 0.00 1.82
383 384 5.047660 GGGTCAGATGCTCTCGATTAATAGT 60.048 44.000 0.00 0.00 0.00 2.12
384 385 5.047731 TGGGTCAGATGCTCTCGATTAATAG 60.048 44.000 0.00 0.00 0.00 1.73
385 386 4.832823 TGGGTCAGATGCTCTCGATTAATA 59.167 41.667 0.00 0.00 0.00 0.98
386 387 3.643320 TGGGTCAGATGCTCTCGATTAAT 59.357 43.478 0.00 0.00 0.00 1.40
387 388 3.031013 TGGGTCAGATGCTCTCGATTAA 58.969 45.455 0.00 0.00 0.00 1.40
388 389 2.666317 TGGGTCAGATGCTCTCGATTA 58.334 47.619 0.00 0.00 0.00 1.75
389 390 1.489481 TGGGTCAGATGCTCTCGATT 58.511 50.000 0.00 0.00 0.00 3.34
390 391 1.714541 ATGGGTCAGATGCTCTCGAT 58.285 50.000 0.00 0.00 0.00 3.59
391 392 2.364972 TATGGGTCAGATGCTCTCGA 57.635 50.000 0.00 0.00 0.00 4.04
392 393 3.006217 TGAATATGGGTCAGATGCTCTCG 59.994 47.826 0.00 0.00 0.00 4.04
393 394 4.040217 ACTGAATATGGGTCAGATGCTCTC 59.960 45.833 9.41 0.00 44.44 3.20
394 395 3.972638 ACTGAATATGGGTCAGATGCTCT 59.027 43.478 9.41 0.00 44.44 4.09
395 396 4.348863 ACTGAATATGGGTCAGATGCTC 57.651 45.455 9.41 0.00 44.44 4.26
396 397 4.904251 ACTACTGAATATGGGTCAGATGCT 59.096 41.667 9.41 0.00 44.44 3.79
397 398 5.220710 ACTACTGAATATGGGTCAGATGC 57.779 43.478 9.41 0.00 44.44 3.91
398 399 5.305386 TGGACTACTGAATATGGGTCAGATG 59.695 44.000 9.41 4.81 44.44 2.90
399 400 5.305644 GTGGACTACTGAATATGGGTCAGAT 59.694 44.000 9.41 0.00 44.44 2.90
400 401 4.649674 GTGGACTACTGAATATGGGTCAGA 59.350 45.833 9.41 0.00 44.44 3.27
401 402 4.499865 CGTGGACTACTGAATATGGGTCAG 60.500 50.000 2.01 2.01 46.59 3.51
402 403 3.383505 CGTGGACTACTGAATATGGGTCA 59.616 47.826 0.00 0.00 0.00 4.02
403 404 3.383825 ACGTGGACTACTGAATATGGGTC 59.616 47.826 0.00 0.00 0.00 4.46
404 405 3.371965 ACGTGGACTACTGAATATGGGT 58.628 45.455 0.00 0.00 0.00 4.51
405 406 4.402056 AACGTGGACTACTGAATATGGG 57.598 45.455 0.00 0.00 0.00 4.00
406 407 5.661458 AGAAACGTGGACTACTGAATATGG 58.339 41.667 0.00 0.00 0.00 2.74
407 408 6.455646 GCAAGAAACGTGGACTACTGAATATG 60.456 42.308 0.00 0.00 0.00 1.78
408 409 5.581085 GCAAGAAACGTGGACTACTGAATAT 59.419 40.000 0.00 0.00 0.00 1.28
409 410 4.927425 GCAAGAAACGTGGACTACTGAATA 59.073 41.667 0.00 0.00 0.00 1.75
410 411 3.746492 GCAAGAAACGTGGACTACTGAAT 59.254 43.478 0.00 0.00 0.00 2.57
411 412 3.128349 GCAAGAAACGTGGACTACTGAA 58.872 45.455 0.00 0.00 0.00 3.02
412 413 2.364324 AGCAAGAAACGTGGACTACTGA 59.636 45.455 0.00 0.00 0.00 3.41
420 421 1.722011 ATACCGAGCAAGAAACGTGG 58.278 50.000 0.00 0.00 0.00 4.94
447 448 9.203421 ACCAAAAAGACTACAAAACAGAAAAAG 57.797 29.630 0.00 0.00 0.00 2.27
454 455 7.479980 CATGAGACCAAAAAGACTACAAAACA 58.520 34.615 0.00 0.00 0.00 2.83
527 532 0.319728 TCTCTGCAGCTTGGTCACTC 59.680 55.000 9.47 0.00 0.00 3.51
598 603 1.333619 CACGGTCAGGTTTCAGGTTTG 59.666 52.381 0.00 0.00 0.00 2.93
663 668 5.877012 TGGGAATCTTTTTCTCTCGATGAAG 59.123 40.000 0.00 0.00 0.00 3.02
749 755 2.680805 CGCAGTTCATAGTGGTTGGGAT 60.681 50.000 0.00 0.00 0.00 3.85
750 756 1.338674 CGCAGTTCATAGTGGTTGGGA 60.339 52.381 0.00 0.00 0.00 4.37
752 758 0.447801 GCGCAGTTCATAGTGGTTGG 59.552 55.000 0.30 0.00 0.00 3.77
753 759 0.447801 GGCGCAGTTCATAGTGGTTG 59.552 55.000 10.83 0.00 0.00 3.77
754 760 1.019278 CGGCGCAGTTCATAGTGGTT 61.019 55.000 10.83 0.00 0.00 3.67
756 762 1.421410 GACGGCGCAGTTCATAGTGG 61.421 60.000 15.89 0.00 0.00 4.00
758 764 1.153628 GGACGGCGCAGTTCATAGT 60.154 57.895 15.89 0.00 0.00 2.12
760 766 0.529773 GATGGACGGCGCAGTTCATA 60.530 55.000 30.59 7.95 40.25 2.15
761 767 1.815421 GATGGACGGCGCAGTTCAT 60.815 57.895 30.90 30.90 42.69 2.57
762 768 2.434185 GATGGACGGCGCAGTTCA 60.434 61.111 24.01 24.01 33.58 3.18
763 769 2.032634 TTGATGGACGGCGCAGTTC 61.033 57.895 15.89 14.14 0.00 3.01
764 770 2.031919 TTGATGGACGGCGCAGTT 59.968 55.556 15.89 0.00 0.00 3.16
765 771 2.742372 GTTGATGGACGGCGCAGT 60.742 61.111 14.51 14.51 0.00 4.40
766 772 3.499737 GGTTGATGGACGGCGCAG 61.500 66.667 10.83 8.25 0.00 5.18
787 793 1.395262 GGAAGTTCTTCGCTTAGCAGC 59.605 52.381 4.70 0.00 43.41 5.25
809 815 2.158986 CGAGATGCAGATCAGGGAGTTT 60.159 50.000 0.00 0.00 0.00 2.66
830 836 1.816074 TCACCGCCCAATGTACTTTC 58.184 50.000 0.00 0.00 0.00 2.62
907 913 4.966168 TGAGATACTGGGGCTATTTGTACA 59.034 41.667 0.00 0.00 0.00 2.90
931 937 7.783090 TTTGCTCTGAAGATATCTGTGAATC 57.217 36.000 5.86 0.00 0.00 2.52
933 939 9.671279 TTTATTTGCTCTGAAGATATCTGTGAA 57.329 29.630 5.86 0.00 0.00 3.18
934 940 9.102757 GTTTATTTGCTCTGAAGATATCTGTGA 57.897 33.333 5.86 4.42 0.00 3.58
935 941 8.886719 TGTTTATTTGCTCTGAAGATATCTGTG 58.113 33.333 5.86 0.00 0.00 3.66
945 951 6.095440 GGCCTTCTATGTTTATTTGCTCTGAA 59.905 38.462 0.00 0.00 0.00 3.02
981 989 1.948104 TGGTAAGTGACTGTGTGTGC 58.052 50.000 0.00 0.00 0.00 4.57
988 996 1.278985 TGGAGCCATGGTAAGTGACTG 59.721 52.381 14.67 0.00 0.00 3.51
992 1000 0.620556 ACCTGGAGCCATGGTAAGTG 59.379 55.000 14.67 1.50 31.50 3.16
1079 1087 1.166531 AGCTGCCGTGTCCAAAAGAC 61.167 55.000 0.00 0.00 46.51 3.01
1124 1132 2.092882 GGAACTTCCGGCGTCGAAG 61.093 63.158 12.93 19.75 39.00 3.79
1128 1136 2.322830 GGTTGGAACTTCCGGCGTC 61.323 63.158 6.01 0.00 40.17 5.19
1131 1139 0.893727 ATGTGGTTGGAACTTCCGGC 60.894 55.000 0.00 0.00 40.17 6.13
1146 1154 3.258872 TGGAAGGAATTGAAGGCAATGTG 59.741 43.478 0.00 0.00 43.71 3.21
1156 1164 1.005332 TGCGGGAATGGAAGGAATTGA 59.995 47.619 0.00 0.00 0.00 2.57
1161 1169 0.035439 GAACTGCGGGAATGGAAGGA 60.035 55.000 0.00 0.00 0.00 3.36
1188 1196 1.173043 ACGGTATTGGTGGCATTGTG 58.827 50.000 0.00 0.00 0.00 3.33
1197 1205 3.463944 GATCGGAATGAACGGTATTGGT 58.536 45.455 0.00 0.00 0.00 3.67
1215 1223 1.595382 CATGGCGACCTTCGGGATC 60.595 63.158 0.00 0.00 40.84 3.36
1339 1347 7.184862 GGGATGGATGGAATAATAGTTGGAAT 58.815 38.462 0.00 0.00 0.00 3.01
1346 1354 6.051717 GTGATCGGGATGGATGGAATAATAG 58.948 44.000 0.00 0.00 0.00 1.73
1349 1357 3.650461 TGTGATCGGGATGGATGGAATAA 59.350 43.478 0.00 0.00 0.00 1.40
1350 1358 3.247162 TGTGATCGGGATGGATGGAATA 58.753 45.455 0.00 0.00 0.00 1.75
1362 1370 3.343617 AGTTGTTGGTATTGTGATCGGG 58.656 45.455 0.00 0.00 0.00 5.14
1386 1394 0.106669 GGAACCCAGGAATGGTAGGC 60.107 60.000 0.00 0.00 34.15 3.93
1441 1449 0.890683 CTTCATGGGCTGGTGGTTTC 59.109 55.000 0.00 0.00 0.00 2.78
1536 1545 8.682710 GCCAGTAATAAAACATCCAATAGAACA 58.317 33.333 0.00 0.00 0.00 3.18
1542 1551 6.340522 GCAAGCCAGTAATAAAACATCCAAT 58.659 36.000 0.00 0.00 0.00 3.16
1552 1561 3.057876 CACCAAACGCAAGCCAGTAATAA 60.058 43.478 0.00 0.00 45.62 1.40
1553 1562 2.486203 CACCAAACGCAAGCCAGTAATA 59.514 45.455 0.00 0.00 45.62 0.98
1554 1563 1.269448 CACCAAACGCAAGCCAGTAAT 59.731 47.619 0.00 0.00 45.62 1.89
1687 1696 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1688 1697 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1689 1698 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1690 1699 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1691 1700 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1692 1701 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1719 1728 9.698309 CGTATGTAGTCATTTATTGGAATCTCT 57.302 33.333 0.00 0.00 35.70 3.10
1720 1729 8.926710 CCGTATGTAGTCATTTATTGGAATCTC 58.073 37.037 0.00 0.00 35.70 2.75
1721 1730 8.647796 TCCGTATGTAGTCATTTATTGGAATCT 58.352 33.333 0.00 0.00 35.70 2.40
1722 1731 8.827177 TCCGTATGTAGTCATTTATTGGAATC 57.173 34.615 0.00 0.00 35.70 2.52
1723 1732 9.052759 GTTCCGTATGTAGTCATTTATTGGAAT 57.947 33.333 0.00 0.00 35.70 3.01
1724 1733 8.041919 TGTTCCGTATGTAGTCATTTATTGGAA 58.958 33.333 0.00 0.00 35.70 3.53
1725 1734 7.557724 TGTTCCGTATGTAGTCATTTATTGGA 58.442 34.615 0.00 0.00 35.70 3.53
1726 1735 7.780008 TGTTCCGTATGTAGTCATTTATTGG 57.220 36.000 0.00 0.00 35.70 3.16
1730 1739 9.438228 TCATTTTGTTCCGTATGTAGTCATTTA 57.562 29.630 0.00 0.00 35.70 1.40
1731 1740 8.330466 TCATTTTGTTCCGTATGTAGTCATTT 57.670 30.769 0.00 0.00 35.70 2.32
1732 1741 7.606456 ACTCATTTTGTTCCGTATGTAGTCATT 59.394 33.333 0.00 0.00 35.70 2.57
1733 1742 7.064609 CACTCATTTTGTTCCGTATGTAGTCAT 59.935 37.037 0.00 0.00 38.00 3.06
1734 1743 6.367695 CACTCATTTTGTTCCGTATGTAGTCA 59.632 38.462 0.00 0.00 0.00 3.41
1735 1744 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
1736 1745 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
1737 1746 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
1738 1747 7.822334 AGATTCACTCATTTTGTTCCGTATGTA 59.178 33.333 0.00 0.00 0.00 2.29
1739 1748 6.655003 AGATTCACTCATTTTGTTCCGTATGT 59.345 34.615 0.00 0.00 0.00 2.29
1740 1749 7.076842 AGATTCACTCATTTTGTTCCGTATG 57.923 36.000 0.00 0.00 0.00 2.39
1741 1750 7.822334 TGTAGATTCACTCATTTTGTTCCGTAT 59.178 33.333 0.00 0.00 0.00 3.06
1742 1751 7.117236 GTGTAGATTCACTCATTTTGTTCCGTA 59.883 37.037 0.00 0.00 35.68 4.02
1743 1752 5.995282 TGTAGATTCACTCATTTTGTTCCGT 59.005 36.000 0.00 0.00 0.00 4.69
1744 1753 6.147821 AGTGTAGATTCACTCATTTTGTTCCG 59.852 38.462 0.00 0.00 44.07 4.30
1745 1754 7.440523 AGTGTAGATTCACTCATTTTGTTCC 57.559 36.000 0.00 0.00 44.07 3.62
1777 1786 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
1778 1787 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
1779 1788 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
1783 1792 9.121658 CACTATGGACTACATACGGATGTATAT 57.878 37.037 20.64 12.15 45.42 0.86
1784 1793 7.555195 CCACTATGGACTACATACGGATGTATA 59.445 40.741 20.64 10.04 42.60 1.47
1785 1794 6.377429 CCACTATGGACTACATACGGATGTAT 59.623 42.308 20.64 9.39 42.60 2.29
1786 1795 5.708697 CCACTATGGACTACATACGGATGTA 59.291 44.000 19.32 19.32 41.62 2.29
1787 1796 4.523173 CCACTATGGACTACATACGGATGT 59.477 45.833 19.12 19.12 44.08 3.06
1788 1797 4.765339 TCCACTATGGACTACATACGGATG 59.235 45.833 5.94 5.94 42.67 3.51
1789 1798 4.994282 TCCACTATGGACTACATACGGAT 58.006 43.478 0.00 0.00 42.67 4.18
1790 1799 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
1819 1828 9.503399 CCCTCCGCTTCTAAATATAAGTATTTT 57.497 33.333 0.00 0.00 40.21 1.82
1820 1829 8.877195 TCCCTCCGCTTCTAAATATAAGTATTT 58.123 33.333 0.00 0.00 41.92 1.40
1821 1830 8.431910 TCCCTCCGCTTCTAAATATAAGTATT 57.568 34.615 0.00 0.00 31.89 1.89
1822 1831 7.674772 ACTCCCTCCGCTTCTAAATATAAGTAT 59.325 37.037 0.00 0.00 0.00 2.12
1823 1832 7.008941 ACTCCCTCCGCTTCTAAATATAAGTA 58.991 38.462 0.00 0.00 0.00 2.24
1824 1833 5.839606 ACTCCCTCCGCTTCTAAATATAAGT 59.160 40.000 0.00 0.00 0.00 2.24
1825 1834 6.347859 ACTCCCTCCGCTTCTAAATATAAG 57.652 41.667 0.00 0.00 0.00 1.73
1826 1835 6.071503 GCTACTCCCTCCGCTTCTAAATATAA 60.072 42.308 0.00 0.00 0.00 0.98
1827 1836 5.418209 GCTACTCCCTCCGCTTCTAAATATA 59.582 44.000 0.00 0.00 0.00 0.86
1828 1837 4.221041 GCTACTCCCTCCGCTTCTAAATAT 59.779 45.833 0.00 0.00 0.00 1.28
1829 1838 3.573110 GCTACTCCCTCCGCTTCTAAATA 59.427 47.826 0.00 0.00 0.00 1.40
1830 1839 2.365941 GCTACTCCCTCCGCTTCTAAAT 59.634 50.000 0.00 0.00 0.00 1.40
1831 1840 1.755380 GCTACTCCCTCCGCTTCTAAA 59.245 52.381 0.00 0.00 0.00 1.85
1832 1841 1.341679 TGCTACTCCCTCCGCTTCTAA 60.342 52.381 0.00 0.00 0.00 2.10
1833 1842 0.257905 TGCTACTCCCTCCGCTTCTA 59.742 55.000 0.00 0.00 0.00 2.10
1834 1843 0.397816 ATGCTACTCCCTCCGCTTCT 60.398 55.000 0.00 0.00 0.00 2.85
1835 1844 0.249657 CATGCTACTCCCTCCGCTTC 60.250 60.000 0.00 0.00 0.00 3.86
1836 1845 1.690219 CCATGCTACTCCCTCCGCTT 61.690 60.000 0.00 0.00 0.00 4.68
1837 1846 2.136878 CCATGCTACTCCCTCCGCT 61.137 63.158 0.00 0.00 0.00 5.52
1838 1847 2.423446 CCATGCTACTCCCTCCGC 59.577 66.667 0.00 0.00 0.00 5.54
1839 1848 1.330655 ACACCATGCTACTCCCTCCG 61.331 60.000 0.00 0.00 0.00 4.63
1840 1849 0.466124 GACACCATGCTACTCCCTCC 59.534 60.000 0.00 0.00 0.00 4.30
1841 1850 1.195115 TGACACCATGCTACTCCCTC 58.805 55.000 0.00 0.00 0.00 4.30
1842 1851 1.279271 GTTGACACCATGCTACTCCCT 59.721 52.381 0.00 0.00 0.00 4.20
1843 1852 1.279271 AGTTGACACCATGCTACTCCC 59.721 52.381 0.00 0.00 0.00 4.30
1844 1853 2.289694 ACAGTTGACACCATGCTACTCC 60.290 50.000 0.00 0.00 0.00 3.85
1845 1854 2.996621 GACAGTTGACACCATGCTACTC 59.003 50.000 0.00 0.00 0.00 2.59
1846 1855 2.368548 TGACAGTTGACACCATGCTACT 59.631 45.455 0.00 0.00 0.00 2.57
1928 1980 5.241285 TGTCAAACAAAAGATGAGCATGCTA 59.759 36.000 22.74 9.75 0.00 3.49
1930 1982 4.300803 TGTCAAACAAAAGATGAGCATGC 58.699 39.130 10.51 10.51 0.00 4.06
2011 2073 3.119708 GCTTCCTGCTGGTGTTTATTCAG 60.120 47.826 9.73 0.00 38.95 3.02
2012 2074 2.819608 GCTTCCTGCTGGTGTTTATTCA 59.180 45.455 9.73 0.00 38.95 2.57
2013 2075 2.819608 TGCTTCCTGCTGGTGTTTATTC 59.180 45.455 9.73 0.00 43.37 1.75
2028 2090 3.818787 CATGCCGTGCCTGCTTCC 61.819 66.667 0.00 0.00 0.00 3.46
2046 2108 9.237187 TGTCATAAGCATGTCTTGGTAAATTAA 57.763 29.630 11.24 0.00 34.16 1.40
2057 2119 5.297776 GCCAATACTTGTCATAAGCATGTCT 59.702 40.000 0.00 0.00 33.57 3.41
2070 2133 6.240549 AGCTTACATCTAGCCAATACTTGT 57.759 37.500 0.00 0.00 39.47 3.16
2079 2142 4.130286 ACACTGAAGCTTACATCTAGCC 57.870 45.455 0.00 0.00 39.47 3.93
2101 2164 1.004745 AGCCACGGGATTTGTTCAGAT 59.995 47.619 0.00 0.00 0.00 2.90
2113 2176 1.797211 GAGTCCGAGATAGCCACGGG 61.797 65.000 12.85 0.00 45.61 5.28
2271 2353 8.568794 TGTTATCACCGTTAACATCAAATTTGA 58.431 29.630 22.52 22.52 42.14 2.69
2273 2355 9.751542 TTTGTTATCACCGTTAACATCAAATTT 57.248 25.926 6.39 0.00 38.84 1.82
2366 2450 4.083565 GGAACTTAGTGGTGCCCATTTTA 58.916 43.478 0.00 0.00 35.28 1.52
2374 2458 4.218417 ACAATCAATGGAACTTAGTGGTGC 59.782 41.667 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.