Multiple sequence alignment - TraesCS2A01G470200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G470200 chr2A 100.000 2768 0 0 1 2768 713015478 713018245 0.000000e+00 5112.0
1 TraesCS2A01G470200 chr2A 89.912 228 20 1 592 816 713216711 713216484 9.700000e-75 291.0
2 TraesCS2A01G470200 chr2A 100.000 37 0 0 1822 1858 725997629 725997665 4.950000e-08 69.4
3 TraesCS2A01G470200 chr2B 95.366 1597 64 5 199 1791 690930187 690931777 0.000000e+00 2531.0
4 TraesCS2A01G470200 chr2B 88.584 1314 110 13 476 1774 691050797 691049509 0.000000e+00 1559.0
5 TraesCS2A01G470200 chr2B 95.380 909 41 1 1860 2768 120569276 120568369 0.000000e+00 1445.0
6 TraesCS2A01G470200 chr2B 88.462 104 7 3 199 301 691050888 691050789 1.350000e-23 121.0
7 TraesCS2A01G470200 chr2B 97.436 39 1 0 1822 1860 716599712 716599750 1.780000e-07 67.6
8 TraesCS2A01G470200 chr2D 88.880 1322 109 12 476 1774 575162416 575161110 0.000000e+00 1592.0
9 TraesCS2A01G470200 chr2D 94.427 933 45 3 862 1791 574656540 574657468 0.000000e+00 1428.0
10 TraesCS2A01G470200 chr2D 93.556 838 39 5 33 858 574655373 574656207 0.000000e+00 1234.0
11 TraesCS2A01G470200 chr2D 88.445 926 79 5 860 1774 575169178 575168270 0.000000e+00 1092.0
12 TraesCS2A01G470200 chr2D 91.899 395 31 1 788 1181 575174956 575174562 4.030000e-153 551.0
13 TraesCS2A01G470200 chr2D 86.643 277 19 7 476 744 575175220 575174954 9.700000e-75 291.0
14 TraesCS2A01G470200 chr2D 87.500 104 8 3 199 301 575162507 575162408 6.260000e-22 115.0
15 TraesCS2A01G470200 chr2D 100.000 39 0 0 1822 1860 590994096 590994134 3.820000e-09 73.1
16 TraesCS2A01G470200 chr6A 96.175 915 33 2 1855 2768 36082950 36082037 0.000000e+00 1495.0
17 TraesCS2A01G470200 chr6B 94.290 683 39 0 2086 2768 135384686 135385368 0.000000e+00 1046.0
18 TraesCS2A01G470200 chr6B 78.953 917 178 14 1860 2768 26406061 26405152 6.550000e-171 610.0
19 TraesCS2A01G470200 chr1D 85.621 918 101 6 1853 2768 114135910 114135022 0.000000e+00 935.0
20 TraesCS2A01G470200 chr7D 88.336 703 82 0 2066 2768 581258978 581258276 0.000000e+00 845.0
21 TraesCS2A01G470200 chr7D 89.514 658 66 1 1115 1769 152219593 152220250 0.000000e+00 830.0
22 TraesCS2A01G470200 chr7D 88.821 653 67 3 1121 1770 141562156 141562805 0.000000e+00 797.0
23 TraesCS2A01G470200 chr7D 92.373 236 18 0 434 669 152218446 152218681 1.230000e-88 337.0
24 TraesCS2A01G470200 chr7D 93.151 219 15 0 763 981 141561588 141561806 3.440000e-84 322.0
25 TraesCS2A01G470200 chr7D 82.768 354 58 2 771 1124 474006489 474006139 2.070000e-81 313.0
26 TraesCS2A01G470200 chr7D 89.030 237 25 1 433 669 141561022 141561257 2.700000e-75 292.0
27 TraesCS2A01G470200 chr7D 87.755 147 15 2 978 1124 141561914 141562057 4.740000e-38 169.0
28 TraesCS2A01G470200 chr7D 89.855 69 5 1 366 432 152218232 152218300 1.370000e-13 87.9
29 TraesCS2A01G470200 chr7A 89.433 653 63 4 1121 1770 144170867 144170218 0.000000e+00 819.0
30 TraesCS2A01G470200 chr7A 88.906 658 70 1 1115 1769 152833772 152834429 0.000000e+00 808.0
31 TraesCS2A01G470200 chr7A 95.824 431 15 1 1858 2285 430243409 430243839 0.000000e+00 693.0
32 TraesCS2A01G470200 chr7A 95.400 413 19 0 2356 2768 430266204 430266616 0.000000e+00 658.0
33 TraesCS2A01G470200 chr7A 93.220 236 16 0 434 669 152832566 152832801 5.670000e-92 348.0
34 TraesCS2A01G470200 chr7A 88.608 237 26 1 433 669 144171951 144171716 1.250000e-73 287.0
35 TraesCS2A01G470200 chr7A 87.755 147 15 2 978 1124 144171106 144170963 4.740000e-38 169.0
36 TraesCS2A01G470200 chr7A 97.826 92 2 0 2274 2365 430244166 430244257 2.850000e-35 159.0
37 TraesCS2A01G470200 chr7B 88.450 658 73 1 1115 1769 114395044 114395701 0.000000e+00 791.0
38 TraesCS2A01G470200 chr7B 88.497 652 69 3 1121 1769 106859041 106858393 0.000000e+00 784.0
39 TraesCS2A01G470200 chr7B 80.878 706 125 7 2067 2768 74814583 74815282 5.210000e-152 547.0
40 TraesCS2A01G470200 chr7B 92.797 236 17 0 434 669 114393909 114394144 2.640000e-90 342.0
41 TraesCS2A01G470200 chr7B 92.694 219 16 0 763 981 106859597 106859379 1.600000e-82 316.0
42 TraesCS2A01G470200 chr7B 88.608 237 26 1 433 669 106860166 106859931 1.250000e-73 287.0
43 TraesCS2A01G470200 chr7B 78.308 461 84 14 1860 2311 424574465 424574918 1.620000e-72 283.0
44 TraesCS2A01G470200 chr7B 83.422 187 28 3 1858 2042 74813206 74813391 1.320000e-38 171.0
45 TraesCS2A01G470200 chr7B 89.231 65 7 0 368 432 114393730 114393794 6.350000e-12 82.4
46 TraesCS2A01G470200 chr3A 79.258 916 177 12 1860 2768 85379694 85378785 6.510000e-176 627.0
47 TraesCS2A01G470200 chr4A 82.962 628 104 1 2140 2767 595540880 595540256 5.180000e-157 564.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G470200 chr2A 713015478 713018245 2767 False 5112.000000 5112 100.000000 1 2768 1 chr2A.!!$F1 2767
1 TraesCS2A01G470200 chr2B 690930187 690931777 1590 False 2531.000000 2531 95.366000 199 1791 1 chr2B.!!$F1 1592
2 TraesCS2A01G470200 chr2B 120568369 120569276 907 True 1445.000000 1445 95.380000 1860 2768 1 chr2B.!!$R1 908
3 TraesCS2A01G470200 chr2B 691049509 691050888 1379 True 840.000000 1559 88.523000 199 1774 2 chr2B.!!$R2 1575
4 TraesCS2A01G470200 chr2D 574655373 574657468 2095 False 1331.000000 1428 93.991500 33 1791 2 chr2D.!!$F2 1758
5 TraesCS2A01G470200 chr2D 575168270 575169178 908 True 1092.000000 1092 88.445000 860 1774 1 chr2D.!!$R1 914
6 TraesCS2A01G470200 chr2D 575161110 575162507 1397 True 853.500000 1592 88.190000 199 1774 2 chr2D.!!$R2 1575
7 TraesCS2A01G470200 chr2D 575174562 575175220 658 True 421.000000 551 89.271000 476 1181 2 chr2D.!!$R3 705
8 TraesCS2A01G470200 chr6A 36082037 36082950 913 True 1495.000000 1495 96.175000 1855 2768 1 chr6A.!!$R1 913
9 TraesCS2A01G470200 chr6B 135384686 135385368 682 False 1046.000000 1046 94.290000 2086 2768 1 chr6B.!!$F1 682
10 TraesCS2A01G470200 chr6B 26405152 26406061 909 True 610.000000 610 78.953000 1860 2768 1 chr6B.!!$R1 908
11 TraesCS2A01G470200 chr1D 114135022 114135910 888 True 935.000000 935 85.621000 1853 2768 1 chr1D.!!$R1 915
12 TraesCS2A01G470200 chr7D 581258276 581258978 702 True 845.000000 845 88.336000 2066 2768 1 chr7D.!!$R2 702
13 TraesCS2A01G470200 chr7D 152218232 152220250 2018 False 418.300000 830 90.580667 366 1769 3 chr7D.!!$F2 1403
14 TraesCS2A01G470200 chr7D 141561022 141562805 1783 False 395.000000 797 89.689250 433 1770 4 chr7D.!!$F1 1337
15 TraesCS2A01G470200 chr7A 152832566 152834429 1863 False 578.000000 808 91.063000 434 1769 2 chr7A.!!$F2 1335
16 TraesCS2A01G470200 chr7A 430243409 430244257 848 False 426.000000 693 96.825000 1858 2365 2 chr7A.!!$F3 507
17 TraesCS2A01G470200 chr7A 144170218 144171951 1733 True 425.000000 819 88.598667 433 1770 3 chr7A.!!$R1 1337
18 TraesCS2A01G470200 chr7B 106858393 106860166 1773 True 462.333333 784 89.933000 433 1769 3 chr7B.!!$R1 1336
19 TraesCS2A01G470200 chr7B 114393730 114395701 1971 False 405.133333 791 90.159333 368 1769 3 chr7B.!!$F3 1401
20 TraesCS2A01G470200 chr7B 74813206 74815282 2076 False 359.000000 547 82.150000 1858 2768 2 chr7B.!!$F2 910
21 TraesCS2A01G470200 chr3A 85378785 85379694 909 True 627.000000 627 79.258000 1860 2768 1 chr3A.!!$R1 908
22 TraesCS2A01G470200 chr4A 595540256 595540880 624 True 564.000000 564 82.962000 2140 2767 1 chr4A.!!$R1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 361 0.029567 CCCTAGCAGACGTCGATGTC 59.97 60.0 26.87 26.87 39.21 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 4538 0.108186 CGTAGTCTTGCCATCAGCCA 60.108 55.0 0.0 0.0 42.71 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.288810 ACTGGCAAAGAAAATCTTTCATGTA 57.711 32.000 2.47 0.00 42.60 2.29
53 54 6.640499 TGGCAAAGAAAATCTTTCATGTAACG 59.360 34.615 2.47 0.00 42.60 3.18
70 71 8.465999 TCATGTAACGAAGAAATAAAATGGCAT 58.534 29.630 0.00 0.00 0.00 4.40
86 87 8.735692 AAAATGGCATACATAATGGGAAAAAG 57.264 30.769 0.00 0.00 39.40 2.27
89 90 5.362430 TGGCATACATAATGGGAAAAAGGAC 59.638 40.000 0.00 0.00 35.99 3.85
96 97 6.436218 ACATAATGGGAAAAAGGACAGGTTAC 59.564 38.462 0.00 0.00 0.00 2.50
97 98 2.853705 TGGGAAAAAGGACAGGTTACG 58.146 47.619 0.00 0.00 0.00 3.18
99 100 3.390639 TGGGAAAAAGGACAGGTTACGTA 59.609 43.478 0.00 0.00 0.00 3.57
172 173 2.802816 AGTTGCGTGCTTCAGAGTTAAG 59.197 45.455 0.00 0.00 0.00 1.85
173 174 2.800544 GTTGCGTGCTTCAGAGTTAAGA 59.199 45.455 0.00 0.00 0.00 2.10
175 176 3.059884 TGCGTGCTTCAGAGTTAAGAAG 58.940 45.455 0.00 0.00 43.12 2.85
233 234 3.486875 CGGTTTAGGCAATTTGATCGACC 60.487 47.826 0.00 0.75 0.00 4.79
348 361 0.029567 CCCTAGCAGACGTCGATGTC 59.970 60.000 26.87 26.87 39.21 3.06
889 1646 2.936032 AGCTCCCCAACCTCCACC 60.936 66.667 0.00 0.00 0.00 4.61
1041 2078 1.279527 TAGACGTTGCAAGTTCGGCG 61.280 55.000 11.92 0.00 37.69 6.46
1371 2552 4.529219 TGCCAGCCCATCTACGCG 62.529 66.667 3.53 3.53 0.00 6.01
1443 2624 2.062177 CCGGTACCATCCCTTCGGT 61.062 63.158 13.54 0.00 39.41 4.69
1459 2640 3.286751 GTGCCGGCAAGTTCAGCA 61.287 61.111 34.66 0.58 0.00 4.41
1478 2659 1.135199 CATCAACATGTTCAGGCTGGC 60.135 52.381 15.73 8.78 0.00 4.85
1509 2690 1.656263 GTTCGTCGTCGTGAGCACA 60.656 57.895 1.33 0.00 38.33 4.57
1584 2765 4.021925 GGGTTCTGGCCGCTCACT 62.022 66.667 0.00 0.00 0.00 3.41
1593 2774 1.291877 GGCCGCTCACTGTGTACTTG 61.292 60.000 7.79 0.00 0.00 3.16
1773 2961 4.780815 TCAAGACCAAGTTGTGAACAGAT 58.219 39.130 1.45 0.00 0.00 2.90
1774 2962 4.816385 TCAAGACCAAGTTGTGAACAGATC 59.184 41.667 1.45 0.00 0.00 2.75
1775 2963 3.393800 AGACCAAGTTGTGAACAGATCG 58.606 45.455 1.45 0.00 0.00 3.69
1776 2964 3.069586 AGACCAAGTTGTGAACAGATCGA 59.930 43.478 1.45 0.00 0.00 3.59
1777 2965 3.804036 ACCAAGTTGTGAACAGATCGAA 58.196 40.909 1.45 0.00 0.00 3.71
1778 2966 3.809832 ACCAAGTTGTGAACAGATCGAAG 59.190 43.478 1.45 0.00 0.00 3.79
1812 3000 2.987413 TTAGATTGTGCAAGCCAACG 57.013 45.000 0.00 0.00 0.00 4.10
1813 3001 0.521291 TAGATTGTGCAAGCCAACGC 59.479 50.000 0.00 0.00 0.00 4.84
1814 3002 2.050168 ATTGTGCAAGCCAACGCG 60.050 55.556 3.53 3.53 41.18 6.01
1815 3003 4.921847 TTGTGCAAGCCAACGCGC 62.922 61.111 5.73 0.00 41.18 6.86
1832 3020 3.454573 CGTGGCGCTACTGGGGTA 61.455 66.667 22.04 0.00 0.00 3.69
1833 3021 2.499685 GTGGCGCTACTGGGGTAG 59.500 66.667 17.55 0.00 45.91 3.18
1839 3027 2.499685 CTACTGGGGTAGCACGGC 59.500 66.667 2.03 0.00 38.91 5.68
1840 3028 3.078836 TACTGGGGTAGCACGGCC 61.079 66.667 2.03 0.00 0.00 6.13
1841 3029 3.908904 TACTGGGGTAGCACGGCCA 62.909 63.158 2.24 0.00 0.00 5.36
1842 3030 4.028490 CTGGGGTAGCACGGCCAA 62.028 66.667 2.24 0.00 0.00 4.52
1843 3031 4.338710 TGGGGTAGCACGGCCAAC 62.339 66.667 2.24 0.00 0.00 3.77
1844 3032 4.338710 GGGGTAGCACGGCCAACA 62.339 66.667 2.24 0.00 0.00 3.33
1845 3033 2.045340 GGGTAGCACGGCCAACAT 60.045 61.111 2.24 0.00 0.00 2.71
1846 3034 2.406616 GGGTAGCACGGCCAACATG 61.407 63.158 2.24 0.00 0.00 3.21
1847 3035 1.674322 GGTAGCACGGCCAACATGT 60.674 57.895 2.24 0.00 0.00 3.21
1848 3036 1.501741 GTAGCACGGCCAACATGTG 59.498 57.895 2.24 3.03 36.70 3.21
2015 3208 1.762957 CTGTTCCCATGGTAGATCGGT 59.237 52.381 11.73 0.00 0.00 4.69
2018 3211 1.704641 TCCCATGGTAGATCGGTGAG 58.295 55.000 11.73 0.00 0.00 3.51
2074 4436 1.756950 CGAACGGGATCAGAGGGGA 60.757 63.158 0.00 0.00 0.00 4.81
2592 5292 1.621072 GGGTGAGAGTCCCAGATCTGT 60.621 57.143 21.11 2.39 44.05 3.41
2654 5355 4.019231 GGAGATTGGTTGGGAGAAGTAGTT 60.019 45.833 0.00 0.00 0.00 2.24
2711 5412 0.669077 AGTATCTTAGAGTGCGGGCG 59.331 55.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.612066 AGATTTTCTTTGCCAGTTCAATAAAAA 57.388 25.926 0.00 0.00 31.29 1.94
17 18 9.612066 AAGATTTTCTTTGCCAGTTCAATAAAA 57.388 25.926 0.00 0.00 31.57 1.52
18 19 9.612066 AAAGATTTTCTTTGCCAGTTCAATAAA 57.388 25.926 1.85 0.00 44.34 1.40
19 20 9.260002 GAAAGATTTTCTTTGCCAGTTCAATAA 57.740 29.630 7.20 0.00 45.85 1.40
20 21 8.420222 TGAAAGATTTTCTTTGCCAGTTCAATA 58.580 29.630 7.20 0.00 45.85 1.90
21 22 7.274447 TGAAAGATTTTCTTTGCCAGTTCAAT 58.726 30.769 7.20 0.00 45.85 2.57
22 23 6.638610 TGAAAGATTTTCTTTGCCAGTTCAA 58.361 32.000 7.20 0.00 45.85 2.69
23 24 6.219417 TGAAAGATTTTCTTTGCCAGTTCA 57.781 33.333 7.20 0.00 45.85 3.18
24 25 6.703165 ACATGAAAGATTTTCTTTGCCAGTTC 59.297 34.615 7.20 0.00 45.85 3.01
25 26 6.585416 ACATGAAAGATTTTCTTTGCCAGTT 58.415 32.000 7.20 0.00 45.85 3.16
26 27 6.165700 ACATGAAAGATTTTCTTTGCCAGT 57.834 33.333 7.20 0.00 45.85 4.00
27 28 7.148918 CGTTACATGAAAGATTTTCTTTGCCAG 60.149 37.037 7.20 0.00 45.85 4.85
28 29 6.640499 CGTTACATGAAAGATTTTCTTTGCCA 59.360 34.615 7.20 1.41 45.85 4.92
29 30 6.861055 TCGTTACATGAAAGATTTTCTTTGCC 59.139 34.615 7.20 0.00 45.85 4.52
30 31 7.851822 TCGTTACATGAAAGATTTTCTTTGC 57.148 32.000 7.20 1.26 45.85 3.68
31 32 9.663904 TCTTCGTTACATGAAAGATTTTCTTTG 57.336 29.630 7.20 0.00 45.85 2.77
61 62 7.774625 CCTTTTTCCCATTATGTATGCCATTTT 59.225 33.333 0.00 0.00 34.86 1.82
65 66 5.362430 GTCCTTTTTCCCATTATGTATGCCA 59.638 40.000 0.00 0.00 32.60 4.92
70 71 6.147437 ACCTGTCCTTTTTCCCATTATGTA 57.853 37.500 0.00 0.00 0.00 2.29
80 81 5.467735 ACACATACGTAACCTGTCCTTTTTC 59.532 40.000 0.00 0.00 0.00 2.29
86 87 3.248266 GTGACACATACGTAACCTGTCC 58.752 50.000 19.79 12.04 31.94 4.02
89 90 3.616821 CCATGTGACACATACGTAACCTG 59.383 47.826 20.42 6.88 36.53 4.00
172 173 3.717294 TTCCCGGGCCTCAGCTTC 61.717 66.667 18.49 0.00 39.73 3.86
173 174 4.035102 GTTCCCGGGCCTCAGCTT 62.035 66.667 18.49 0.00 39.73 3.74
175 176 3.860930 TTTGTTCCCGGGCCTCAGC 62.861 63.158 18.49 0.09 38.76 4.26
176 177 1.000896 ATTTGTTCCCGGGCCTCAG 60.001 57.895 18.49 0.00 0.00 3.35
181 182 1.134818 GGATTTGATTTGTTCCCGGGC 60.135 52.381 18.49 2.59 0.00 6.13
233 234 0.518636 TACTCCGTGTTCCGTCTTCG 59.481 55.000 0.00 0.00 33.66 3.79
309 322 3.188786 ATCTCGCGCGCTTCAACC 61.189 61.111 30.48 0.00 0.00 3.77
348 361 3.917760 GGCAGTCCCCCGATCTCG 61.918 72.222 0.00 0.00 39.44 4.04
565 729 1.515736 GCACGGAGGTGTAGTACGC 60.516 63.158 5.22 5.22 46.13 4.42
889 1646 2.913054 ATCGACAGCCACGCCATCTG 62.913 60.000 0.00 0.00 0.00 2.90
1041 2078 2.871022 CAGTGTCAGCCATATCTTCTGC 59.129 50.000 0.00 0.00 0.00 4.26
1299 2477 0.249531 TGCAGACGTTGGCGAAGTTA 60.250 50.000 7.71 0.00 42.00 2.24
1459 2640 1.180029 GCCAGCCTGAACATGTTGAT 58.820 50.000 17.58 0.00 0.00 2.57
1509 2690 1.457346 GCAGCAAGATGGCAAGTACT 58.543 50.000 0.00 0.00 35.83 2.73
1584 2765 1.116536 TCTCCACGGGCAAGTACACA 61.117 55.000 0.00 0.00 0.00 3.72
1593 2774 0.249911 GGATGTACATCTCCACGGGC 60.250 60.000 29.87 11.32 37.92 6.13
1664 2845 1.154836 GCGAAACACACGAAGCTCG 60.155 57.895 0.00 4.36 46.93 5.03
1791 2979 3.637432 CGTTGGCTTGCACAATCTAAAA 58.363 40.909 0.00 0.00 0.00 1.52
1792 2980 2.606795 GCGTTGGCTTGCACAATCTAAA 60.607 45.455 0.00 0.00 35.83 1.85
1793 2981 1.068610 GCGTTGGCTTGCACAATCTAA 60.069 47.619 0.00 0.00 35.83 2.10
1794 2982 0.521291 GCGTTGGCTTGCACAATCTA 59.479 50.000 0.00 0.00 35.83 1.98
1795 2983 1.286880 GCGTTGGCTTGCACAATCT 59.713 52.632 0.00 0.00 35.83 2.40
1796 2984 2.082366 CGCGTTGGCTTGCACAATC 61.082 57.895 0.00 0.00 36.88 2.67
1797 2985 2.050168 CGCGTTGGCTTGCACAAT 60.050 55.556 0.00 0.00 36.88 2.71
1798 2986 4.921847 GCGCGTTGGCTTGCACAA 62.922 61.111 8.43 0.00 36.88 3.33
1815 3003 3.426117 CTACCCCAGTAGCGCCACG 62.426 68.421 2.29 0.00 39.66 4.94
1816 3004 2.499685 CTACCCCAGTAGCGCCAC 59.500 66.667 2.29 0.00 39.66 5.01
1823 3011 3.078836 GGCCGTGCTACCCCAGTA 61.079 66.667 0.00 0.00 0.00 2.74
1825 3013 4.028490 TTGGCCGTGCTACCCCAG 62.028 66.667 0.00 0.00 0.00 4.45
1826 3014 4.338710 GTTGGCCGTGCTACCCCA 62.339 66.667 0.00 0.00 0.00 4.96
1827 3015 3.638592 ATGTTGGCCGTGCTACCCC 62.639 63.158 0.00 0.00 0.00 4.95
1828 3016 2.045340 ATGTTGGCCGTGCTACCC 60.045 61.111 0.00 0.00 0.00 3.69
1829 3017 1.674322 ACATGTTGGCCGTGCTACC 60.674 57.895 0.00 0.00 33.01 3.18
1830 3018 1.501741 CACATGTTGGCCGTGCTAC 59.498 57.895 0.00 0.00 33.01 3.58
1831 3019 1.673993 CCACATGTTGGCCGTGCTA 60.674 57.895 0.00 0.00 39.07 3.49
1832 3020 2.985282 CCACATGTTGGCCGTGCT 60.985 61.111 0.00 0.00 39.07 4.40
1840 3028 1.284657 CTCGCTAGAGCCACATGTTG 58.715 55.000 0.00 0.00 37.73 3.33
1841 3029 0.176680 CCTCGCTAGAGCCACATGTT 59.823 55.000 0.00 0.00 43.05 2.71
1842 3030 1.680522 CCCTCGCTAGAGCCACATGT 61.681 60.000 0.00 0.00 43.05 3.21
1843 3031 1.068753 CCCTCGCTAGAGCCACATG 59.931 63.158 0.00 0.00 43.05 3.21
1844 3032 1.381872 ACCCTCGCTAGAGCCACAT 60.382 57.895 0.00 0.00 43.05 3.21
1845 3033 2.037367 ACCCTCGCTAGAGCCACA 59.963 61.111 0.00 0.00 43.05 4.17
1846 3034 2.787567 GGACCCTCGCTAGAGCCAC 61.788 68.421 0.00 0.00 43.05 5.01
1847 3035 2.442272 GGACCCTCGCTAGAGCCA 60.442 66.667 0.00 0.00 43.05 4.75
1848 3036 2.442272 TGGACCCTCGCTAGAGCC 60.442 66.667 0.00 0.00 43.05 4.70
1849 3037 2.787567 GGTGGACCCTCGCTAGAGC 61.788 68.421 0.00 0.00 43.05 4.09
1850 3038 1.379977 TGGTGGACCCTCGCTAGAG 60.380 63.158 0.00 0.00 43.98 2.43
1851 3039 1.681327 GTGGTGGACCCTCGCTAGA 60.681 63.158 0.00 0.00 34.29 2.43
1852 3040 2.893398 GTGGTGGACCCTCGCTAG 59.107 66.667 0.00 0.00 34.29 3.42
1853 3041 3.066190 CGTGGTGGACCCTCGCTA 61.066 66.667 0.00 0.00 42.63 4.26
2003 3196 2.176247 AACCCTCACCGATCTACCAT 57.824 50.000 0.00 0.00 0.00 3.55
2015 3208 1.302511 GCGCTCCTGAAAACCCTCA 60.303 57.895 0.00 0.00 0.00 3.86
2018 3211 2.391389 CGAGCGCTCCTGAAAACCC 61.391 63.158 30.66 3.44 0.00 4.11
2176 4538 0.108186 CGTAGTCTTGCCATCAGCCA 60.108 55.000 0.00 0.00 42.71 4.75
2592 5292 5.067954 TGATTCCGTCCTCATATCTAACGA 58.932 41.667 0.00 0.00 35.45 3.85
2654 5355 5.964477 ACCATCCTTCTCAACATCTACCTTA 59.036 40.000 0.00 0.00 0.00 2.69
2711 5412 4.195416 AGGGCTCAAAGATCGAGATTTTC 58.805 43.478 0.00 0.00 31.84 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.