Multiple sequence alignment - TraesCS2A01G470000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G470000 chr2A 100.000 3482 0 0 1 3482 712960570 712964051 0.000000e+00 6431.0
1 TraesCS2A01G470000 chr2D 92.904 1691 102 9 795 2478 574481284 574482963 0.000000e+00 2442.0
2 TraesCS2A01G470000 chr2D 96.450 676 22 2 2808 3482 584247039 584247713 0.000000e+00 1114.0
3 TraesCS2A01G470000 chr2D 82.231 726 88 19 809 1504 574470272 574470986 3.870000e-164 588.0
4 TraesCS2A01G470000 chr2D 86.344 227 16 3 584 797 574480513 574480737 2.090000e-57 233.0
5 TraesCS2A01G470000 chr2D 96.667 120 2 1 2701 2818 584245202 584245321 7.620000e-47 198.0
6 TraesCS2A01G470000 chr2D 87.500 136 17 0 1 136 574480293 574480428 1.290000e-34 158.0
7 TraesCS2A01G470000 chr2D 91.176 68 5 1 1846 1912 574471456 574471523 1.330000e-14 91.6
8 TraesCS2A01G470000 chr2B 92.792 1429 91 6 858 2285 690736610 690738027 0.000000e+00 2058.0
9 TraesCS2A01G470000 chr2B 96.041 783 30 1 2701 3482 733044443 733043661 0.000000e+00 1273.0
10 TraesCS2A01G470000 chr2B 86.433 855 99 11 1507 2357 690748265 690749106 0.000000e+00 920.0
11 TraesCS2A01G470000 chr2B 84.062 778 115 8 1459 2233 690785776 690786547 0.000000e+00 741.0
12 TraesCS2A01G470000 chr2B 83.835 532 78 7 979 1504 690725137 690725666 1.870000e-137 499.0
13 TraesCS2A01G470000 chr2B 87.850 428 24 10 2265 2687 690738285 690738689 8.740000e-131 477.0
14 TraesCS2A01G470000 chr2B 85.818 275 28 8 71 342 690734279 690734545 7.360000e-72 281.0
15 TraesCS2A01G470000 chr2B 93.902 82 3 2 651 731 690736452 690736532 4.720000e-24 122.0
16 TraesCS2A01G470000 chr2B 90.278 72 7 0 584 655 690734543 690734614 1.030000e-15 95.3
17 TraesCS2A01G470000 chr2B 97.561 41 1 0 762 802 690736542 690736582 1.730000e-08 71.3
18 TraesCS2A01G470000 chr6A 98.851 783 8 1 2701 3482 13605285 13606067 0.000000e+00 1395.0
19 TraesCS2A01G470000 chr6A 98.340 783 12 1 2701 3482 473740639 473741421 0.000000e+00 1373.0
20 TraesCS2A01G470000 chr5D 97.190 783 21 1 2701 3482 198231502 198230720 0.000000e+00 1323.0
21 TraesCS2A01G470000 chr4D 96.552 783 22 2 2701 3482 40620803 40620025 0.000000e+00 1291.0
22 TraesCS2A01G470000 chr7D 95.913 783 31 1 2701 3482 9041184 9041966 0.000000e+00 1267.0
23 TraesCS2A01G470000 chr7D 85.547 256 33 4 343 595 611139750 611139496 7.410000e-67 265.0
24 TraesCS2A01G470000 chr1A 91.737 593 44 2 2701 3288 412520215 412520807 0.000000e+00 819.0
25 TraesCS2A01G470000 chr1A 92.386 197 15 0 3286 3482 412554556 412554752 7.360000e-72 281.0
26 TraesCS2A01G470000 chr6B 88.889 243 23 4 342 582 246789239 246789479 2.630000e-76 296.0
27 TraesCS2A01G470000 chr5A 86.694 248 30 3 340 585 681868873 681869119 4.430000e-69 272.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G470000 chr2A 712960570 712964051 3481 False 6431.000000 6431 100.000000 1 3482 1 chr2A.!!$F1 3481
1 TraesCS2A01G470000 chr2D 574480293 574482963 2670 False 944.333333 2442 88.916000 1 2478 3 chr2D.!!$F2 2477
2 TraesCS2A01G470000 chr2D 584245202 584247713 2511 False 656.000000 1114 96.558500 2701 3482 2 chr2D.!!$F3 781
3 TraesCS2A01G470000 chr2D 574470272 574471523 1251 False 339.800000 588 86.703500 809 1912 2 chr2D.!!$F1 1103
4 TraesCS2A01G470000 chr2B 733043661 733044443 782 True 1273.000000 1273 96.041000 2701 3482 1 chr2B.!!$R1 781
5 TraesCS2A01G470000 chr2B 690748265 690749106 841 False 920.000000 920 86.433000 1507 2357 1 chr2B.!!$F2 850
6 TraesCS2A01G470000 chr2B 690785776 690786547 771 False 741.000000 741 84.062000 1459 2233 1 chr2B.!!$F3 774
7 TraesCS2A01G470000 chr2B 690734279 690738689 4410 False 517.433333 2058 91.366833 71 2687 6 chr2B.!!$F4 2616
8 TraesCS2A01G470000 chr2B 690725137 690725666 529 False 499.000000 499 83.835000 979 1504 1 chr2B.!!$F1 525
9 TraesCS2A01G470000 chr6A 13605285 13606067 782 False 1395.000000 1395 98.851000 2701 3482 1 chr6A.!!$F1 781
10 TraesCS2A01G470000 chr6A 473740639 473741421 782 False 1373.000000 1373 98.340000 2701 3482 1 chr6A.!!$F2 781
11 TraesCS2A01G470000 chr5D 198230720 198231502 782 True 1323.000000 1323 97.190000 2701 3482 1 chr5D.!!$R1 781
12 TraesCS2A01G470000 chr4D 40620025 40620803 778 True 1291.000000 1291 96.552000 2701 3482 1 chr4D.!!$R1 781
13 TraesCS2A01G470000 chr7D 9041184 9041966 782 False 1267.000000 1267 95.913000 2701 3482 1 chr7D.!!$F1 781
14 TraesCS2A01G470000 chr1A 412520215 412520807 592 False 819.000000 819 91.737000 2701 3288 1 chr1A.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 381 0.032813 CCAGGTCCATCCAGCCAAAT 60.033 55.0 0.00 0.0 39.02 2.32 F
529 531 0.036010 AACGAGATGTGAAGCCCTGG 60.036 55.0 0.00 0.0 0.00 4.45 F
582 584 0.179045 CTAGGATCCAAACAGCCCCG 60.179 60.0 15.82 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 3837 1.069823 CGATGAACTGAGCATAGCCCT 59.930 52.381 0.0 0.0 0.00 5.19 R
1695 4305 1.198637 GACAACCTTGATGCTCTGTGC 59.801 52.381 0.0 0.0 43.25 4.57 R
2496 5397 2.095466 GCCGACGATTTGAAACATCCAA 60.095 45.455 0.0 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 6.509418 AGAAAAAGCAAAAAGGAAAAACCC 57.491 33.333 0.00 0.00 40.05 4.11
57 58 1.484653 AGCAAAAAGGAAAAACCCGCT 59.515 42.857 0.00 0.00 40.05 5.52
81 82 3.513912 GGAACCTTCCTAAAACCATTGGG 59.486 47.826 7.78 0.00 44.11 4.12
136 137 3.238597 ACCACATGTTATTTGGCTGGTT 58.761 40.909 0.00 0.00 33.25 3.67
139 140 4.081531 CCACATGTTATTTGGCTGGTTCAT 60.082 41.667 0.00 0.00 0.00 2.57
141 142 6.267817 CACATGTTATTTGGCTGGTTCATAG 58.732 40.000 0.00 0.00 0.00 2.23
142 143 5.951747 ACATGTTATTTGGCTGGTTCATAGT 59.048 36.000 0.00 0.00 0.00 2.12
151 152 0.249120 TGGTTCATAGTGGGAGTGCG 59.751 55.000 0.00 0.00 0.00 5.34
201 202 6.346838 GCAAAAAGCGAGATTTAACATTTGCT 60.347 34.615 11.00 0.00 43.90 3.91
204 205 5.886960 AGCGAGATTTAACATTTGCTCTT 57.113 34.783 0.00 0.00 0.00 2.85
211 212 8.324163 AGATTTAACATTTGCTCTTAAGTCGT 57.676 30.769 1.63 0.00 0.00 4.34
212 213 8.784043 AGATTTAACATTTGCTCTTAAGTCGTT 58.216 29.630 1.63 0.49 0.00 3.85
227 228 7.981789 TCTTAAGTCGTTGAATAGATGCAGATT 59.018 33.333 1.63 0.00 0.00 2.40
243 244 6.297694 TGCAGATTATTTGTTTTGTTTGGC 57.702 33.333 0.00 0.00 0.00 4.52
248 249 9.733219 CAGATTATTTGTTTTGTTTGGCATTTT 57.267 25.926 0.00 0.00 0.00 1.82
249 250 9.949174 AGATTATTTGTTTTGTTTGGCATTTTC 57.051 25.926 0.00 0.00 0.00 2.29
250 251 9.949174 GATTATTTGTTTTGTTTGGCATTTTCT 57.051 25.926 0.00 0.00 0.00 2.52
251 252 9.733219 ATTATTTGTTTTGTTTGGCATTTTCTG 57.267 25.926 0.00 0.00 0.00 3.02
262 263 3.255969 GCATTTTCTGGATGCCAATGT 57.744 42.857 0.00 0.00 43.10 2.71
282 283 1.372683 CATGTGGGCGGATCCTAGG 59.627 63.158 10.75 0.82 34.39 3.02
351 353 8.154649 TCTTTCTAAAGTAAAGAGGCTGTTTG 57.845 34.615 18.88 2.08 37.89 2.93
352 354 6.877611 TTCTAAAGTAAAGAGGCTGTTTGG 57.122 37.500 18.88 0.00 0.00 3.28
353 355 5.937111 TCTAAAGTAAAGAGGCTGTTTGGT 58.063 37.500 18.88 3.81 0.00 3.67
354 356 6.362248 TCTAAAGTAAAGAGGCTGTTTGGTT 58.638 36.000 18.88 11.91 0.00 3.67
355 357 7.511268 TCTAAAGTAAAGAGGCTGTTTGGTTA 58.489 34.615 18.88 12.33 0.00 2.85
356 358 6.387041 AAAGTAAAGAGGCTGTTTGGTTAC 57.613 37.500 18.88 9.38 0.00 2.50
357 359 5.306114 AGTAAAGAGGCTGTTTGGTTACT 57.694 39.130 18.88 11.41 0.00 2.24
358 360 5.063880 AGTAAAGAGGCTGTTTGGTTACTG 58.936 41.667 18.88 0.00 31.06 2.74
359 361 3.577805 AAGAGGCTGTTTGGTTACTGT 57.422 42.857 0.00 0.00 0.00 3.55
360 362 3.127425 AGAGGCTGTTTGGTTACTGTC 57.873 47.619 0.00 0.00 0.00 3.51
361 363 2.152016 GAGGCTGTTTGGTTACTGTCC 58.848 52.381 0.00 0.00 0.00 4.02
362 364 1.493022 AGGCTGTTTGGTTACTGTCCA 59.507 47.619 0.00 0.00 0.00 4.02
363 365 1.880027 GGCTGTTTGGTTACTGTCCAG 59.120 52.381 0.00 0.00 36.28 3.86
364 366 1.880027 GCTGTTTGGTTACTGTCCAGG 59.120 52.381 0.00 0.00 36.28 4.45
365 367 2.748465 GCTGTTTGGTTACTGTCCAGGT 60.748 50.000 0.00 0.00 36.28 4.00
366 368 3.139077 CTGTTTGGTTACTGTCCAGGTC 58.861 50.000 0.00 0.00 36.28 3.85
367 369 2.158726 TGTTTGGTTACTGTCCAGGTCC 60.159 50.000 0.00 0.00 36.28 4.46
368 370 1.809133 TTGGTTACTGTCCAGGTCCA 58.191 50.000 0.00 1.97 36.28 4.02
369 371 2.038863 TGGTTACTGTCCAGGTCCAT 57.961 50.000 0.00 0.00 0.00 3.41
370 372 1.906574 TGGTTACTGTCCAGGTCCATC 59.093 52.381 0.00 0.00 0.00 3.51
371 373 1.209747 GGTTACTGTCCAGGTCCATCC 59.790 57.143 0.00 0.00 0.00 3.51
372 374 1.906574 GTTACTGTCCAGGTCCATCCA 59.093 52.381 0.00 0.00 39.02 3.41
373 375 1.866015 TACTGTCCAGGTCCATCCAG 58.134 55.000 0.00 0.00 39.02 3.86
374 376 1.222936 CTGTCCAGGTCCATCCAGC 59.777 63.158 0.00 0.00 39.02 4.85
375 377 2.262774 CTGTCCAGGTCCATCCAGCC 62.263 65.000 0.00 0.00 39.02 4.85
376 378 2.124768 TCCAGGTCCATCCAGCCA 59.875 61.111 0.00 0.00 39.02 4.75
377 379 1.541118 TCCAGGTCCATCCAGCCAA 60.541 57.895 0.00 0.00 39.02 4.52
378 380 1.139498 TCCAGGTCCATCCAGCCAAA 61.139 55.000 0.00 0.00 39.02 3.28
379 381 0.032813 CCAGGTCCATCCAGCCAAAT 60.033 55.000 0.00 0.00 39.02 2.32
380 382 1.396653 CAGGTCCATCCAGCCAAATC 58.603 55.000 0.00 0.00 39.02 2.17
381 383 0.107017 AGGTCCATCCAGCCAAATCG 60.107 55.000 0.00 0.00 39.02 3.34
382 384 1.728490 GGTCCATCCAGCCAAATCGC 61.728 60.000 0.00 0.00 35.97 4.58
383 385 1.819208 TCCATCCAGCCAAATCGCG 60.819 57.895 0.00 0.00 0.00 5.87
384 386 2.717485 CATCCAGCCAAATCGCGG 59.283 61.111 6.13 0.00 0.00 6.46
385 387 2.516930 ATCCAGCCAAATCGCGGG 60.517 61.111 6.13 0.00 44.55 6.13
386 388 3.344137 ATCCAGCCAAATCGCGGGT 62.344 57.895 6.13 0.00 43.72 5.28
388 390 4.481112 CAGCCAAATCGCGGGTGC 62.481 66.667 6.13 2.33 44.39 5.01
389 391 4.722700 AGCCAAATCGCGGGTGCT 62.723 61.111 6.13 4.92 39.65 4.40
390 392 4.481112 GCCAAATCGCGGGTGCTG 62.481 66.667 6.13 0.00 39.65 4.41
391 393 3.814268 CCAAATCGCGGGTGCTGG 61.814 66.667 6.13 2.59 39.65 4.85
392 394 3.814268 CAAATCGCGGGTGCTGGG 61.814 66.667 6.13 0.00 39.65 4.45
404 406 3.747976 GCTGGGGCGCGTCAAAAT 61.748 61.111 14.93 0.00 0.00 1.82
405 407 2.403378 GCTGGGGCGCGTCAAAATA 61.403 57.895 14.93 0.00 0.00 1.40
406 408 1.724582 GCTGGGGCGCGTCAAAATAT 61.725 55.000 14.93 0.00 0.00 1.28
407 409 0.307760 CTGGGGCGCGTCAAAATATC 59.692 55.000 14.93 0.00 0.00 1.63
408 410 1.278637 GGGGCGCGTCAAAATATCG 59.721 57.895 14.93 0.00 0.00 2.92
409 411 1.278637 GGGCGCGTCAAAATATCGG 59.721 57.895 14.93 0.00 0.00 4.18
410 412 1.368850 GGCGCGTCAAAATATCGGC 60.369 57.895 5.47 0.00 38.44 5.54
411 413 1.717728 GCGCGTCAAAATATCGGCG 60.718 57.895 8.43 0.00 0.00 6.46
412 414 1.921475 CGCGTCAAAATATCGGCGA 59.079 52.632 13.87 13.87 0.00 5.54
413 415 0.111704 CGCGTCAAAATATCGGCGAG 60.112 55.000 17.22 0.00 0.00 5.03
414 416 0.383124 GCGTCAAAATATCGGCGAGC 60.383 55.000 17.22 5.94 0.00 5.03
415 417 0.927537 CGTCAAAATATCGGCGAGCA 59.072 50.000 17.22 6.04 0.00 4.26
416 418 1.326245 CGTCAAAATATCGGCGAGCAA 59.674 47.619 17.22 3.54 0.00 3.91
417 419 2.222931 CGTCAAAATATCGGCGAGCAAA 60.223 45.455 17.22 0.68 0.00 3.68
418 420 3.546020 CGTCAAAATATCGGCGAGCAAAT 60.546 43.478 17.22 0.00 0.00 2.32
419 421 3.968724 GTCAAAATATCGGCGAGCAAATC 59.031 43.478 17.22 0.00 0.00 2.17
439 441 3.691342 CCGCCCACGTCTCTCCAA 61.691 66.667 0.00 0.00 37.70 3.53
440 442 2.432628 CGCCCACGTCTCTCCAAC 60.433 66.667 0.00 0.00 33.53 3.77
441 443 2.432628 GCCCACGTCTCTCCAACG 60.433 66.667 0.00 0.00 45.37 4.10
442 444 2.927580 GCCCACGTCTCTCCAACGA 61.928 63.158 2.33 0.00 42.62 3.85
443 445 1.890894 CCCACGTCTCTCCAACGAT 59.109 57.895 2.33 0.00 42.62 3.73
444 446 0.246635 CCCACGTCTCTCCAACGATT 59.753 55.000 2.33 0.00 42.62 3.34
445 447 1.337823 CCCACGTCTCTCCAACGATTT 60.338 52.381 2.33 0.00 42.62 2.17
446 448 1.726791 CCACGTCTCTCCAACGATTTG 59.273 52.381 2.33 0.00 42.62 2.32
453 455 3.262936 CCAACGATTTGGCGCAGA 58.737 55.556 10.83 0.00 46.09 4.26
454 456 1.578926 CCAACGATTTGGCGCAGAA 59.421 52.632 10.83 2.91 46.09 3.02
455 457 0.039617 CCAACGATTTGGCGCAGAAA 60.040 50.000 10.83 8.13 46.09 2.52
456 458 1.052287 CAACGATTTGGCGCAGAAAC 58.948 50.000 10.83 0.61 33.86 2.78
457 459 0.665835 AACGATTTGGCGCAGAAACA 59.334 45.000 10.83 0.00 33.86 2.83
458 460 0.665835 ACGATTTGGCGCAGAAACAA 59.334 45.000 10.83 0.00 33.86 2.83
459 461 1.052287 CGATTTGGCGCAGAAACAAC 58.948 50.000 10.83 2.78 0.00 3.32
460 462 1.052287 GATTTGGCGCAGAAACAACG 58.948 50.000 10.83 0.00 0.00 4.10
461 463 0.318614 ATTTGGCGCAGAAACAACGG 60.319 50.000 10.83 0.00 0.00 4.44
462 464 2.343163 TTTGGCGCAGAAACAACGGG 62.343 55.000 10.83 0.00 0.00 5.28
463 465 2.975799 GGCGCAGAAACAACGGGA 60.976 61.111 10.83 0.00 0.00 5.14
464 466 2.548295 GGCGCAGAAACAACGGGAA 61.548 57.895 10.83 0.00 0.00 3.97
465 467 1.357334 GCGCAGAAACAACGGGAAA 59.643 52.632 0.30 0.00 0.00 3.13
466 468 0.248702 GCGCAGAAACAACGGGAAAA 60.249 50.000 0.30 0.00 0.00 2.29
467 469 1.472990 CGCAGAAACAACGGGAAAAC 58.527 50.000 0.00 0.00 0.00 2.43
468 470 1.472990 GCAGAAACAACGGGAAAACG 58.527 50.000 0.00 0.00 40.31 3.60
475 477 3.641492 ACGGGAAAACGTTACGGC 58.359 55.556 10.20 0.00 46.25 5.68
476 478 2.309501 ACGGGAAAACGTTACGGCG 61.310 57.895 10.20 4.80 46.25 6.46
477 479 2.862436 GGGAAAACGTTACGGCGG 59.138 61.111 13.24 0.00 35.98 6.13
478 480 2.679934 GGGAAAACGTTACGGCGGG 61.680 63.158 13.24 0.00 35.98 6.13
479 481 2.174107 GAAAACGTTACGGCGGGC 59.826 61.111 13.24 0.00 35.98 6.13
480 482 2.281002 AAAACGTTACGGCGGGCT 60.281 55.556 13.24 0.00 35.98 5.19
481 483 1.844771 GAAAACGTTACGGCGGGCTT 61.845 55.000 13.24 0.00 35.98 4.35
482 484 2.120355 AAAACGTTACGGCGGGCTTG 62.120 55.000 13.24 0.00 35.98 4.01
492 494 3.053291 CGGGCTTGGCGTGCTAAA 61.053 61.111 1.82 0.00 0.00 1.85
493 495 2.566529 GGGCTTGGCGTGCTAAAC 59.433 61.111 1.82 0.00 0.00 2.01
494 496 1.971695 GGGCTTGGCGTGCTAAACT 60.972 57.895 1.82 0.00 0.00 2.66
495 497 1.210155 GGCTTGGCGTGCTAAACTG 59.790 57.895 1.82 0.00 0.00 3.16
496 498 1.515521 GGCTTGGCGTGCTAAACTGT 61.516 55.000 1.82 0.00 0.00 3.55
497 499 0.385974 GCTTGGCGTGCTAAACTGTG 60.386 55.000 0.00 0.00 0.00 3.66
498 500 0.238289 CTTGGCGTGCTAAACTGTGG 59.762 55.000 0.00 0.00 0.00 4.17
499 501 1.169661 TTGGCGTGCTAAACTGTGGG 61.170 55.000 0.00 0.00 0.00 4.61
500 502 1.302192 GGCGTGCTAAACTGTGGGA 60.302 57.895 0.00 0.00 0.00 4.37
501 503 1.298859 GGCGTGCTAAACTGTGGGAG 61.299 60.000 0.00 0.00 0.00 4.30
502 504 1.912371 GCGTGCTAAACTGTGGGAGC 61.912 60.000 2.79 2.79 35.43 4.70
503 505 0.320771 CGTGCTAAACTGTGGGAGCT 60.321 55.000 9.39 0.00 35.89 4.09
504 506 1.443802 GTGCTAAACTGTGGGAGCTC 58.556 55.000 4.71 4.71 35.89 4.09
505 507 1.055849 TGCTAAACTGTGGGAGCTCA 58.944 50.000 17.19 0.00 35.89 4.26
506 508 1.630369 TGCTAAACTGTGGGAGCTCAT 59.370 47.619 17.19 0.00 35.89 2.90
507 509 2.284190 GCTAAACTGTGGGAGCTCATC 58.716 52.381 17.19 7.71 32.04 2.92
519 521 2.898705 GAGCTCATCCAAACGAGATGT 58.101 47.619 9.40 0.00 41.56 3.06
520 522 2.606725 GAGCTCATCCAAACGAGATGTG 59.393 50.000 9.40 0.00 41.56 3.21
521 523 2.234661 AGCTCATCCAAACGAGATGTGA 59.765 45.455 6.93 0.00 41.56 3.58
522 524 3.002791 GCTCATCCAAACGAGATGTGAA 58.997 45.455 6.93 0.00 41.56 3.18
523 525 3.063180 GCTCATCCAAACGAGATGTGAAG 59.937 47.826 6.93 0.00 41.56 3.02
524 526 3.002791 TCATCCAAACGAGATGTGAAGC 58.997 45.455 0.00 0.00 41.56 3.86
525 527 1.808411 TCCAAACGAGATGTGAAGCC 58.192 50.000 0.00 0.00 0.00 4.35
526 528 0.804989 CCAAACGAGATGTGAAGCCC 59.195 55.000 0.00 0.00 0.00 5.19
527 529 1.611673 CCAAACGAGATGTGAAGCCCT 60.612 52.381 0.00 0.00 0.00 5.19
528 530 1.466167 CAAACGAGATGTGAAGCCCTG 59.534 52.381 0.00 0.00 0.00 4.45
529 531 0.036010 AACGAGATGTGAAGCCCTGG 60.036 55.000 0.00 0.00 0.00 4.45
530 532 1.194781 ACGAGATGTGAAGCCCTGGT 61.195 55.000 0.00 0.00 0.00 4.00
531 533 0.460987 CGAGATGTGAAGCCCTGGTC 60.461 60.000 0.00 0.00 0.00 4.02
532 534 0.460987 GAGATGTGAAGCCCTGGTCG 60.461 60.000 0.00 0.00 0.00 4.79
533 535 0.904865 AGATGTGAAGCCCTGGTCGA 60.905 55.000 0.00 0.00 0.00 4.20
534 536 0.741221 GATGTGAAGCCCTGGTCGAC 60.741 60.000 7.13 7.13 0.00 4.20
535 537 2.432628 GTGAAGCCCTGGTCGACG 60.433 66.667 9.92 0.00 0.00 5.12
536 538 4.373116 TGAAGCCCTGGTCGACGC 62.373 66.667 9.92 7.28 0.00 5.19
540 542 4.778143 GCCCTGGTCGACGCCAAT 62.778 66.667 9.92 0.00 38.18 3.16
541 543 2.897207 CCCTGGTCGACGCCAATA 59.103 61.111 9.92 0.00 38.18 1.90
542 544 1.445942 CCCTGGTCGACGCCAATAT 59.554 57.895 9.92 0.00 38.18 1.28
543 545 0.179056 CCCTGGTCGACGCCAATATT 60.179 55.000 9.92 0.00 38.18 1.28
544 546 1.663695 CCTGGTCGACGCCAATATTT 58.336 50.000 9.92 0.00 38.18 1.40
545 547 2.014128 CCTGGTCGACGCCAATATTTT 58.986 47.619 9.92 0.00 38.18 1.82
546 548 2.223249 CCTGGTCGACGCCAATATTTTG 60.223 50.000 9.92 0.00 38.18 2.44
558 560 4.732784 CCAATATTTTGGTTGGACAGACG 58.267 43.478 6.76 0.00 46.15 4.18
559 561 4.217550 CCAATATTTTGGTTGGACAGACGT 59.782 41.667 6.76 0.00 46.15 4.34
560 562 5.153513 CAATATTTTGGTTGGACAGACGTG 58.846 41.667 0.00 0.00 0.00 4.49
561 563 1.384525 TTTTGGTTGGACAGACGTGG 58.615 50.000 0.00 0.00 0.00 4.94
562 564 0.464735 TTTGGTTGGACAGACGTGGG 60.465 55.000 0.00 0.00 0.00 4.61
563 565 2.668550 GGTTGGACAGACGTGGGC 60.669 66.667 0.00 0.00 0.00 5.36
564 566 2.426023 GTTGGACAGACGTGGGCT 59.574 61.111 0.00 0.00 0.00 5.19
565 567 1.669440 GTTGGACAGACGTGGGCTA 59.331 57.895 0.00 0.00 0.00 3.93
566 568 0.389948 GTTGGACAGACGTGGGCTAG 60.390 60.000 0.00 0.00 0.00 3.42
567 569 1.541310 TTGGACAGACGTGGGCTAGG 61.541 60.000 0.00 0.00 0.00 3.02
568 570 1.681327 GGACAGACGTGGGCTAGGA 60.681 63.158 0.00 0.00 0.00 2.94
569 571 1.043673 GGACAGACGTGGGCTAGGAT 61.044 60.000 0.00 0.00 0.00 3.24
570 572 0.386113 GACAGACGTGGGCTAGGATC 59.614 60.000 0.00 0.00 0.00 3.36
571 573 1.043673 ACAGACGTGGGCTAGGATCC 61.044 60.000 2.48 2.48 0.00 3.36
572 574 1.043116 CAGACGTGGGCTAGGATCCA 61.043 60.000 15.82 0.00 0.00 3.41
573 575 0.325296 AGACGTGGGCTAGGATCCAA 60.325 55.000 15.82 0.00 34.47 3.53
574 576 0.539986 GACGTGGGCTAGGATCCAAA 59.460 55.000 15.82 0.00 34.47 3.28
575 577 0.252197 ACGTGGGCTAGGATCCAAAC 59.748 55.000 15.82 1.60 34.47 2.93
576 578 0.251916 CGTGGGCTAGGATCCAAACA 59.748 55.000 15.82 2.47 34.47 2.83
577 579 1.743772 CGTGGGCTAGGATCCAAACAG 60.744 57.143 15.82 6.43 34.47 3.16
578 580 0.255890 TGGGCTAGGATCCAAACAGC 59.744 55.000 15.82 15.64 0.00 4.40
579 581 3.102090 GGCTAGGATCCAAACAGCC 57.898 57.895 23.00 23.00 44.54 4.85
580 582 0.466372 GGCTAGGATCCAAACAGCCC 60.466 60.000 25.24 13.81 44.93 5.19
581 583 0.466372 GCTAGGATCCAAACAGCCCC 60.466 60.000 15.82 0.00 0.00 5.80
582 584 0.179045 CTAGGATCCAAACAGCCCCG 60.179 60.000 15.82 0.00 0.00 5.73
645 647 7.490402 TCGAAAATATTCTTCGTCTTCCTTACC 59.510 37.037 21.31 0.00 44.64 2.85
744 2601 2.038387 ATCCCTTTGGTATCGTGTGC 57.962 50.000 0.00 0.00 0.00 4.57
751 2608 1.803334 TGGTATCGTGTGCCTTTCAC 58.197 50.000 0.47 0.00 45.82 3.18
768 2625 5.392767 TTTCACATCTCTTCTCGCTAACT 57.607 39.130 0.00 0.00 0.00 2.24
802 2659 9.773328 CATGTGAACACGAAGTTATAATTCATT 57.227 29.630 0.00 0.00 41.61 2.57
846 3251 0.179234 TCGTTTCTGTTCCCACTGCA 59.821 50.000 0.00 0.00 0.00 4.41
851 3256 2.543777 TCTGTTCCCACTGCAACTAC 57.456 50.000 0.00 0.00 0.00 2.73
853 3258 2.037251 TCTGTTCCCACTGCAACTACTC 59.963 50.000 0.00 0.00 0.00 2.59
854 3259 1.071699 TGTTCCCACTGCAACTACTCC 59.928 52.381 0.00 0.00 0.00 3.85
855 3260 0.320374 TTCCCACTGCAACTACTCCG 59.680 55.000 0.00 0.00 0.00 4.63
856 3261 1.741770 CCCACTGCAACTACTCCGC 60.742 63.158 0.00 0.00 0.00 5.54
977 3387 1.202545 CCTCGCCTAGAAAAGCCCTAC 60.203 57.143 0.00 0.00 0.00 3.18
992 3435 1.096386 CCTACGCTAGCCTGAGACGT 61.096 60.000 9.66 1.54 40.53 4.34
1010 3454 1.657822 GTCCCTCGCATTCCTCTTTC 58.342 55.000 0.00 0.00 0.00 2.62
1088 3532 1.064946 GACCTCGTCGAGATGCCTG 59.935 63.158 23.74 8.02 0.00 4.85
1094 3538 4.193334 TCGAGATGCCTGACGCCG 62.193 66.667 0.00 0.00 36.24 6.46
1199 3643 4.980805 TTCAGCGTCGGCGGCTTT 62.981 61.111 13.05 0.00 46.35 3.51
1277 3721 1.202486 TCGGCGTTCTTGAACTGTCTT 60.202 47.619 6.85 0.00 0.00 3.01
1295 3739 3.942115 GTCTTAGCCCAGAAAAGGATGTC 59.058 47.826 0.00 0.00 0.00 3.06
1362 3806 3.244561 GGTCACCAAGTTTGAGGAGATGA 60.245 47.826 0.00 0.00 0.00 2.92
1393 3837 3.591023 TCACTCCGAAATGCGTTTATCA 58.409 40.909 3.32 0.00 38.67 2.15
1695 4305 0.914644 TCCCATGAAGGAGAAGGCAG 59.085 55.000 0.00 0.00 41.22 4.85
1776 4386 1.134521 TGTACACGGATTCCATGCCTC 60.135 52.381 0.00 0.00 0.00 4.70
1840 4461 0.036483 TTGCTAGTTGCTGCGGATCA 60.036 50.000 0.00 0.00 43.37 2.92
1860 4481 6.153680 GGATCAGTATGGACTAGATGGGTTAG 59.846 46.154 0.00 0.00 36.16 2.34
1915 4537 0.778815 GACGTCGAGACTGTTGCAAG 59.221 55.000 0.00 0.00 0.00 4.01
2011 4633 6.595326 CAGAATGTTCTACAAGCTGTTATGGA 59.405 38.462 0.00 0.00 35.34 3.41
2072 4694 5.104402 TCTGCTCATGAAGGACATATTGGAA 60.104 40.000 0.00 0.00 37.46 3.53
2161 4783 7.248437 TCTATGTTCTACCGTGATATTATGCG 58.752 38.462 0.00 0.00 0.00 4.73
2198 4820 9.888878 CATTTTGACGCTATTTTCATCATATCT 57.111 29.630 0.00 0.00 0.00 1.98
2312 5213 8.359642 CACTTTCCCATTCTTCAGTTTATTCAA 58.640 33.333 0.00 0.00 0.00 2.69
2377 5278 5.675684 TCTGAGTATTGTGGCAATGTAGA 57.324 39.130 4.78 1.55 0.00 2.59
2411 5312 8.871686 ATTACTCAAACCAATGAACAACTTTC 57.128 30.769 0.00 0.00 0.00 2.62
2472 5373 2.783135 ACTGCACGTTCAGATCCATTT 58.217 42.857 22.14 0.00 37.51 2.32
2483 5384 9.667107 ACGTTCAGATCCATTTCTAAATTAAGA 57.333 29.630 0.00 0.00 0.00 2.10
2513 5414 9.487790 ACAAAATATTTGGATGTTTCAAATCGT 57.512 25.926 9.65 0.00 41.97 3.73
2514 5415 9.956797 CAAAATATTTGGATGTTTCAAATCGTC 57.043 29.630 0.39 0.00 41.97 4.20
2515 5416 7.969387 AATATTTGGATGTTTCAAATCGTCG 57.031 32.000 5.47 0.00 41.97 5.12
2516 5417 3.822594 TTGGATGTTTCAAATCGTCGG 57.177 42.857 0.00 0.00 0.00 4.79
2517 5418 1.466950 TGGATGTTTCAAATCGTCGGC 59.533 47.619 0.00 0.00 0.00 5.54
2518 5419 1.466950 GGATGTTTCAAATCGTCGGCA 59.533 47.619 0.00 0.00 0.00 5.69
2519 5420 2.095466 GGATGTTTCAAATCGTCGGCAA 60.095 45.455 0.00 0.00 0.00 4.52
2520 5421 3.427503 GGATGTTTCAAATCGTCGGCAAT 60.428 43.478 0.00 0.00 0.00 3.56
2521 5422 3.196007 TGTTTCAAATCGTCGGCAATC 57.804 42.857 0.00 0.00 0.00 2.67
2522 5423 2.811431 TGTTTCAAATCGTCGGCAATCT 59.189 40.909 0.00 0.00 0.00 2.40
2523 5424 3.252215 TGTTTCAAATCGTCGGCAATCTT 59.748 39.130 0.00 0.00 0.00 2.40
2524 5425 4.226761 GTTTCAAATCGTCGGCAATCTTT 58.773 39.130 0.00 0.00 0.00 2.52
2525 5426 5.049336 TGTTTCAAATCGTCGGCAATCTTTA 60.049 36.000 0.00 0.00 0.00 1.85
2526 5427 4.593597 TCAAATCGTCGGCAATCTTTAC 57.406 40.909 0.00 0.00 0.00 2.01
2527 5428 3.997681 TCAAATCGTCGGCAATCTTTACA 59.002 39.130 0.00 0.00 0.00 2.41
2528 5429 4.634004 TCAAATCGTCGGCAATCTTTACAT 59.366 37.500 0.00 0.00 0.00 2.29
2529 5430 5.123186 TCAAATCGTCGGCAATCTTTACATT 59.877 36.000 0.00 0.00 0.00 2.71
2581 5482 7.951530 ACAAATTTTCCTTTTGTGATGCTAG 57.048 32.000 1.32 0.00 43.65 3.42
2590 5491 5.471456 CCTTTTGTGATGCTAGTCAGTCTTT 59.529 40.000 0.00 0.00 0.00 2.52
2609 5510 2.536761 TTGGGGTTTGTAGAGTCGTG 57.463 50.000 0.00 0.00 0.00 4.35
2645 5546 2.956333 AGTACAAGGCAAGTGGGAAAAC 59.044 45.455 0.00 0.00 0.00 2.43
2648 5549 0.264657 AAGGCAAGTGGGAAAACCCT 59.735 50.000 6.85 0.00 39.07 4.34
2651 5557 0.673985 GCAAGTGGGAAAACCCTCAC 59.326 55.000 6.85 0.00 39.07 3.51
2687 5593 7.525360 GCAAGTGGGAAAATCCATAGAGAAAAA 60.525 37.037 0.00 0.00 38.64 1.94
2688 5594 7.709149 AGTGGGAAAATCCATAGAGAAAAAG 57.291 36.000 0.00 0.00 38.64 2.27
2689 5595 7.470192 AGTGGGAAAATCCATAGAGAAAAAGA 58.530 34.615 0.00 0.00 38.64 2.52
2690 5596 8.118600 AGTGGGAAAATCCATAGAGAAAAAGAT 58.881 33.333 0.00 0.00 38.64 2.40
2691 5597 8.193438 GTGGGAAAATCCATAGAGAAAAAGATG 58.807 37.037 0.00 0.00 38.64 2.90
2692 5598 7.147846 TGGGAAAATCCATAGAGAAAAAGATGC 60.148 37.037 0.00 0.00 38.64 3.91
2693 5599 7.205992 GGAAAATCCATAGAGAAAAAGATGCC 58.794 38.462 0.00 0.00 36.28 4.40
2694 5600 7.069208 GGAAAATCCATAGAGAAAAAGATGCCT 59.931 37.037 0.00 0.00 36.28 4.75
2695 5601 7.579761 AAATCCATAGAGAAAAAGATGCCTC 57.420 36.000 0.00 0.00 0.00 4.70
2696 5602 5.698741 TCCATAGAGAAAAAGATGCCTCA 57.301 39.130 0.00 0.00 0.00 3.86
2697 5603 6.065976 TCCATAGAGAAAAAGATGCCTCAA 57.934 37.500 0.00 0.00 0.00 3.02
2698 5604 6.118170 TCCATAGAGAAAAAGATGCCTCAAG 58.882 40.000 0.00 0.00 0.00 3.02
2699 5605 5.884792 CCATAGAGAAAAAGATGCCTCAAGT 59.115 40.000 0.00 0.00 0.00 3.16
2791 5699 1.139058 GATCCTATGACGGGCACTTGT 59.861 52.381 0.00 0.00 0.00 3.16
2847 7482 5.507974 TGTAGATGTTCGCAGAATACTACG 58.492 41.667 0.00 0.00 45.90 3.51
2966 7601 4.511454 GGATGCATACTTTTCGAGCACATA 59.489 41.667 0.10 0.00 38.12 2.29
3182 7821 6.464180 GGAGGACATCAAGCATCTTCTATTCT 60.464 42.308 0.00 0.00 0.00 2.40
3229 7869 0.179000 CCGACTAGGCTTGCTGGAAT 59.821 55.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.332502 GGGTTTTTCCTTTTTGCTTTTTCTATA 57.667 29.630 0.00 0.00 36.25 1.31
30 31 6.314152 CGGGTTTTTCCTTTTTGCTTTTTCTA 59.686 34.615 0.00 0.00 36.25 2.10
33 34 4.380023 GCGGGTTTTTCCTTTTTGCTTTTT 60.380 37.500 0.00 0.00 36.25 1.94
40 41 2.502130 TCCAAGCGGGTTTTTCCTTTTT 59.498 40.909 0.00 0.00 38.11 1.94
118 119 5.951747 ACTATGAACCAGCCAAATAACATGT 59.048 36.000 0.00 0.00 0.00 3.21
123 124 4.017958 TCCCACTATGAACCAGCCAAATAA 60.018 41.667 0.00 0.00 0.00 1.40
136 137 0.817654 CTGTCGCACTCCCACTATGA 59.182 55.000 0.00 0.00 0.00 2.15
139 140 1.228769 ACCTGTCGCACTCCCACTA 60.229 57.895 0.00 0.00 0.00 2.74
141 142 2.172483 ATCACCTGTCGCACTCCCAC 62.172 60.000 0.00 0.00 0.00 4.61
142 143 1.888436 GATCACCTGTCGCACTCCCA 61.888 60.000 0.00 0.00 0.00 4.37
151 152 3.616956 TGGAAGTCATGATCACCTGTC 57.383 47.619 0.00 0.00 0.00 3.51
201 202 6.863275 TCTGCATCTATTCAACGACTTAAGA 58.137 36.000 10.09 0.00 0.00 2.10
204 205 9.764363 AATAATCTGCATCTATTCAACGACTTA 57.236 29.630 0.00 0.00 0.00 2.24
227 228 7.554118 TCCAGAAAATGCCAAACAAAACAAATA 59.446 29.630 0.00 0.00 0.00 1.40
243 244 2.933906 GCACATTGGCATCCAGAAAATG 59.066 45.455 0.00 0.00 33.81 2.32
258 259 1.380246 ATCCGCCCACATGCACATT 60.380 52.632 0.00 0.00 0.00 2.71
262 263 2.043604 CTAGGATCCGCCCACATGCA 62.044 60.000 5.98 0.00 37.37 3.96
282 283 4.508662 ACGAAGAGGAATCTCATGGAAAC 58.491 43.478 0.00 0.00 42.34 2.78
330 332 5.937111 ACCAAACAGCCTCTTTACTTTAGA 58.063 37.500 0.00 0.00 0.00 2.10
331 333 6.635030 AACCAAACAGCCTCTTTACTTTAG 57.365 37.500 0.00 0.00 0.00 1.85
332 334 7.227910 CAGTAACCAAACAGCCTCTTTACTTTA 59.772 37.037 0.00 0.00 0.00 1.85
336 338 4.820173 ACAGTAACCAAACAGCCTCTTTAC 59.180 41.667 0.00 0.00 0.00 2.01
337 339 5.043737 ACAGTAACCAAACAGCCTCTTTA 57.956 39.130 0.00 0.00 0.00 1.85
338 340 3.883489 GACAGTAACCAAACAGCCTCTTT 59.117 43.478 0.00 0.00 0.00 2.52
339 341 3.477530 GACAGTAACCAAACAGCCTCTT 58.522 45.455 0.00 0.00 0.00 2.85
340 342 2.224548 GGACAGTAACCAAACAGCCTCT 60.225 50.000 0.00 0.00 0.00 3.69
341 343 2.152016 GGACAGTAACCAAACAGCCTC 58.848 52.381 0.00 0.00 0.00 4.70
342 344 1.493022 TGGACAGTAACCAAACAGCCT 59.507 47.619 0.00 0.00 34.25 4.58
343 345 1.880027 CTGGACAGTAACCAAACAGCC 59.120 52.381 0.00 0.00 36.95 4.85
344 346 1.880027 CCTGGACAGTAACCAAACAGC 59.120 52.381 0.00 0.00 36.95 4.40
345 347 3.139077 GACCTGGACAGTAACCAAACAG 58.861 50.000 0.00 0.00 36.95 3.16
346 348 2.158726 GGACCTGGACAGTAACCAAACA 60.159 50.000 0.00 0.00 36.95 2.83
347 349 2.158726 TGGACCTGGACAGTAACCAAAC 60.159 50.000 0.00 0.00 36.95 2.93
348 350 2.128535 TGGACCTGGACAGTAACCAAA 58.871 47.619 0.00 0.00 36.95 3.28
349 351 1.809133 TGGACCTGGACAGTAACCAA 58.191 50.000 0.00 0.00 36.95 3.67
350 352 1.906574 GATGGACCTGGACAGTAACCA 59.093 52.381 0.00 10.17 35.96 3.67
351 353 1.209747 GGATGGACCTGGACAGTAACC 59.790 57.143 0.00 0.13 35.41 2.85
352 354 1.906574 TGGATGGACCTGGACAGTAAC 59.093 52.381 0.00 0.00 39.86 2.50
353 355 2.187958 CTGGATGGACCTGGACAGTAA 58.812 52.381 0.00 0.00 39.86 2.24
354 356 1.866015 CTGGATGGACCTGGACAGTA 58.134 55.000 0.00 0.00 39.86 2.74
355 357 1.557269 GCTGGATGGACCTGGACAGT 61.557 60.000 0.00 0.00 39.86 3.55
356 358 1.222936 GCTGGATGGACCTGGACAG 59.777 63.158 0.00 0.17 39.86 3.51
357 359 2.300967 GGCTGGATGGACCTGGACA 61.301 63.158 0.00 0.00 39.86 4.02
358 360 1.852157 TTGGCTGGATGGACCTGGAC 61.852 60.000 0.00 0.00 39.86 4.02
359 361 1.139498 TTTGGCTGGATGGACCTGGA 61.139 55.000 0.00 0.00 39.86 3.86
360 362 0.032813 ATTTGGCTGGATGGACCTGG 60.033 55.000 0.00 0.00 39.86 4.45
361 363 1.396653 GATTTGGCTGGATGGACCTG 58.603 55.000 0.00 0.00 39.86 4.00
362 364 0.107017 CGATTTGGCTGGATGGACCT 60.107 55.000 0.00 0.00 39.86 3.85
363 365 1.728490 GCGATTTGGCTGGATGGACC 61.728 60.000 0.00 0.00 39.54 4.46
364 366 1.729881 GCGATTTGGCTGGATGGAC 59.270 57.895 0.00 0.00 0.00 4.02
365 367 1.819208 CGCGATTTGGCTGGATGGA 60.819 57.895 0.00 0.00 0.00 3.41
366 368 2.717485 CGCGATTTGGCTGGATGG 59.283 61.111 0.00 0.00 0.00 3.51
367 369 2.717485 CCGCGATTTGGCTGGATG 59.283 61.111 8.23 0.00 0.00 3.51
368 370 2.516930 CCCGCGATTTGGCTGGAT 60.517 61.111 8.23 0.00 39.40 3.41
369 371 4.028490 ACCCGCGATTTGGCTGGA 62.028 61.111 8.23 0.00 39.40 3.86
370 372 3.814268 CACCCGCGATTTGGCTGG 61.814 66.667 8.23 0.00 42.35 4.85
371 373 4.481112 GCACCCGCGATTTGGCTG 62.481 66.667 8.23 2.65 0.00 4.85
372 374 4.722700 AGCACCCGCGATTTGGCT 62.723 61.111 8.23 6.26 45.49 4.75
373 375 4.481112 CAGCACCCGCGATTTGGC 62.481 66.667 8.23 3.63 45.49 4.52
374 376 3.814268 CCAGCACCCGCGATTTGG 61.814 66.667 8.23 1.61 45.49 3.28
375 377 3.814268 CCCAGCACCCGCGATTTG 61.814 66.667 8.23 1.85 45.49 2.32
387 389 1.724582 ATATTTTGACGCGCCCCAGC 61.725 55.000 5.73 0.00 0.00 4.85
388 390 0.307760 GATATTTTGACGCGCCCCAG 59.692 55.000 5.73 0.00 0.00 4.45
389 391 1.433053 CGATATTTTGACGCGCCCCA 61.433 55.000 5.73 0.00 0.00 4.96
390 392 1.278637 CGATATTTTGACGCGCCCC 59.721 57.895 5.73 0.00 0.00 5.80
391 393 1.278637 CCGATATTTTGACGCGCCC 59.721 57.895 5.73 0.00 0.00 6.13
392 394 1.368850 GCCGATATTTTGACGCGCC 60.369 57.895 5.73 0.00 0.00 6.53
393 395 1.717728 CGCCGATATTTTGACGCGC 60.718 57.895 5.73 0.00 0.00 6.86
394 396 0.111704 CTCGCCGATATTTTGACGCG 60.112 55.000 3.53 3.53 0.00 6.01
395 397 0.383124 GCTCGCCGATATTTTGACGC 60.383 55.000 0.00 0.00 0.00 5.19
396 398 0.927537 TGCTCGCCGATATTTTGACG 59.072 50.000 0.00 0.00 0.00 4.35
397 399 3.398954 TTTGCTCGCCGATATTTTGAC 57.601 42.857 0.00 0.00 0.00 3.18
398 400 3.303066 CGATTTGCTCGCCGATATTTTGA 60.303 43.478 0.00 0.00 41.14 2.69
399 401 2.966708 CGATTTGCTCGCCGATATTTTG 59.033 45.455 0.00 0.00 41.14 2.44
400 402 2.032030 CCGATTTGCTCGCCGATATTTT 60.032 45.455 0.00 0.00 46.25 1.82
401 403 1.531149 CCGATTTGCTCGCCGATATTT 59.469 47.619 0.00 0.00 46.25 1.40
402 404 1.148310 CCGATTTGCTCGCCGATATT 58.852 50.000 0.00 0.00 46.25 1.28
403 405 1.291877 GCCGATTTGCTCGCCGATAT 61.292 55.000 0.00 0.00 46.25 1.63
404 406 1.954146 GCCGATTTGCTCGCCGATA 60.954 57.895 0.00 0.00 46.25 2.92
405 407 3.272334 GCCGATTTGCTCGCCGAT 61.272 61.111 0.00 0.00 46.25 4.18
422 424 3.691342 TTGGAGAGACGTGGGCGG 61.691 66.667 0.00 0.00 43.45 6.13
423 425 2.432628 GTTGGAGAGACGTGGGCG 60.433 66.667 0.00 0.00 44.93 6.13
424 426 2.227089 ATCGTTGGAGAGACGTGGGC 62.227 60.000 0.00 0.00 41.08 5.36
425 427 0.246635 AATCGTTGGAGAGACGTGGG 59.753 55.000 0.00 0.00 41.08 4.61
426 428 1.726791 CAAATCGTTGGAGAGACGTGG 59.273 52.381 0.00 0.00 41.08 4.94
437 439 1.052287 GTTTCTGCGCCAAATCGTTG 58.948 50.000 4.18 0.00 34.25 4.10
438 440 0.665835 TGTTTCTGCGCCAAATCGTT 59.334 45.000 4.18 0.00 0.00 3.85
439 441 0.665835 TTGTTTCTGCGCCAAATCGT 59.334 45.000 4.18 0.00 0.00 3.73
440 442 1.052287 GTTGTTTCTGCGCCAAATCG 58.948 50.000 4.18 0.00 0.00 3.34
441 443 1.052287 CGTTGTTTCTGCGCCAAATC 58.948 50.000 4.18 0.00 0.00 2.17
442 444 0.318614 CCGTTGTTTCTGCGCCAAAT 60.319 50.000 4.18 0.00 0.00 2.32
443 445 1.064946 CCGTTGTTTCTGCGCCAAA 59.935 52.632 4.18 0.30 0.00 3.28
444 446 2.718731 CCGTTGTTTCTGCGCCAA 59.281 55.556 4.18 0.00 0.00 4.52
445 447 3.283684 CCCGTTGTTTCTGCGCCA 61.284 61.111 4.18 0.00 0.00 5.69
446 448 2.065906 TTTCCCGTTGTTTCTGCGCC 62.066 55.000 4.18 0.00 0.00 6.53
447 449 0.248702 TTTTCCCGTTGTTTCTGCGC 60.249 50.000 0.00 0.00 0.00 6.09
448 450 1.472990 GTTTTCCCGTTGTTTCTGCG 58.527 50.000 0.00 0.00 0.00 5.18
449 451 1.202211 ACGTTTTCCCGTTGTTTCTGC 60.202 47.619 0.00 0.00 37.96 4.26
450 452 2.836479 ACGTTTTCCCGTTGTTTCTG 57.164 45.000 0.00 0.00 37.96 3.02
458 460 2.309501 CGCCGTAACGTTTTCCCGT 61.310 57.895 5.91 0.00 44.23 5.28
459 461 2.471166 CGCCGTAACGTTTTCCCG 59.529 61.111 5.91 4.26 0.00 5.14
460 462 2.679934 CCCGCCGTAACGTTTTCCC 61.680 63.158 5.91 0.00 0.00 3.97
461 463 2.862436 CCCGCCGTAACGTTTTCC 59.138 61.111 5.91 0.00 0.00 3.13
462 464 1.844771 AAGCCCGCCGTAACGTTTTC 61.845 55.000 5.91 0.00 0.00 2.29
463 465 1.893335 AAGCCCGCCGTAACGTTTT 60.893 52.632 5.91 0.00 0.00 2.43
464 466 2.281002 AAGCCCGCCGTAACGTTT 60.281 55.556 5.91 0.00 0.00 3.60
465 467 3.045492 CAAGCCCGCCGTAACGTT 61.045 61.111 5.88 5.88 0.00 3.99
475 477 3.053291 TTTAGCACGCCAAGCCCG 61.053 61.111 0.00 0.00 0.00 6.13
476 478 1.971695 AGTTTAGCACGCCAAGCCC 60.972 57.895 0.00 0.00 0.00 5.19
477 479 1.210155 CAGTTTAGCACGCCAAGCC 59.790 57.895 0.00 0.00 0.00 4.35
478 480 0.385974 CACAGTTTAGCACGCCAAGC 60.386 55.000 0.00 0.00 0.00 4.01
479 481 0.238289 CCACAGTTTAGCACGCCAAG 59.762 55.000 0.00 0.00 0.00 3.61
480 482 1.169661 CCCACAGTTTAGCACGCCAA 61.170 55.000 0.00 0.00 0.00 4.52
481 483 1.599518 CCCACAGTTTAGCACGCCA 60.600 57.895 0.00 0.00 0.00 5.69
482 484 1.298859 CTCCCACAGTTTAGCACGCC 61.299 60.000 0.00 0.00 0.00 5.68
483 485 1.912371 GCTCCCACAGTTTAGCACGC 61.912 60.000 0.00 0.00 35.05 5.34
484 486 0.320771 AGCTCCCACAGTTTAGCACG 60.321 55.000 0.00 0.00 37.44 5.34
485 487 1.270839 TGAGCTCCCACAGTTTAGCAC 60.271 52.381 12.15 0.00 37.44 4.40
486 488 1.055849 TGAGCTCCCACAGTTTAGCA 58.944 50.000 12.15 0.00 37.44 3.49
487 489 2.284190 GATGAGCTCCCACAGTTTAGC 58.716 52.381 12.15 0.00 35.16 3.09
488 490 2.237143 TGGATGAGCTCCCACAGTTTAG 59.763 50.000 12.15 0.00 44.23 1.85
489 491 2.265367 TGGATGAGCTCCCACAGTTTA 58.735 47.619 12.15 0.00 44.23 2.01
490 492 1.067295 TGGATGAGCTCCCACAGTTT 58.933 50.000 12.15 0.00 44.23 2.66
491 493 1.067295 TTGGATGAGCTCCCACAGTT 58.933 50.000 12.15 0.00 44.23 3.16
492 494 1.067295 TTTGGATGAGCTCCCACAGT 58.933 50.000 12.15 0.00 44.23 3.55
493 495 1.457346 GTTTGGATGAGCTCCCACAG 58.543 55.000 12.15 0.00 44.23 3.66
494 496 0.321564 CGTTTGGATGAGCTCCCACA 60.322 55.000 12.15 2.29 44.23 4.17
495 497 0.036388 TCGTTTGGATGAGCTCCCAC 60.036 55.000 12.15 1.23 44.23 4.61
496 498 0.250234 CTCGTTTGGATGAGCTCCCA 59.750 55.000 12.15 9.59 44.23 4.37
497 499 0.537188 TCTCGTTTGGATGAGCTCCC 59.463 55.000 12.15 6.67 44.23 4.30
498 500 2.208431 CATCTCGTTTGGATGAGCTCC 58.792 52.381 12.15 0.00 42.02 4.70
499 501 2.606725 CACATCTCGTTTGGATGAGCTC 59.393 50.000 6.82 6.82 42.02 4.09
500 502 2.234661 TCACATCTCGTTTGGATGAGCT 59.765 45.455 10.13 0.00 42.02 4.09
501 503 2.621338 TCACATCTCGTTTGGATGAGC 58.379 47.619 10.13 0.00 42.02 4.26
502 504 3.063180 GCTTCACATCTCGTTTGGATGAG 59.937 47.826 10.13 3.33 42.02 2.90
503 505 3.002791 GCTTCACATCTCGTTTGGATGA 58.997 45.455 10.13 0.00 42.02 2.92
504 506 2.096496 GGCTTCACATCTCGTTTGGATG 59.904 50.000 0.00 0.00 44.17 3.51
505 507 2.359900 GGCTTCACATCTCGTTTGGAT 58.640 47.619 0.00 0.00 0.00 3.41
506 508 1.610624 GGGCTTCACATCTCGTTTGGA 60.611 52.381 0.00 0.00 0.00 3.53
507 509 0.804989 GGGCTTCACATCTCGTTTGG 59.195 55.000 0.00 0.00 0.00 3.28
508 510 1.466167 CAGGGCTTCACATCTCGTTTG 59.534 52.381 0.00 0.00 0.00 2.93
509 511 1.611673 CCAGGGCTTCACATCTCGTTT 60.612 52.381 0.00 0.00 0.00 3.60
510 512 0.036010 CCAGGGCTTCACATCTCGTT 60.036 55.000 0.00 0.00 0.00 3.85
511 513 1.194781 ACCAGGGCTTCACATCTCGT 61.195 55.000 0.00 0.00 0.00 4.18
512 514 0.460987 GACCAGGGCTTCACATCTCG 60.461 60.000 0.00 0.00 0.00 4.04
513 515 0.460987 CGACCAGGGCTTCACATCTC 60.461 60.000 0.00 0.00 0.00 2.75
514 516 0.904865 TCGACCAGGGCTTCACATCT 60.905 55.000 0.00 0.00 0.00 2.90
515 517 0.741221 GTCGACCAGGGCTTCACATC 60.741 60.000 3.51 0.00 0.00 3.06
516 518 1.296715 GTCGACCAGGGCTTCACAT 59.703 57.895 3.51 0.00 0.00 3.21
517 519 2.741092 GTCGACCAGGGCTTCACA 59.259 61.111 3.51 0.00 0.00 3.58
518 520 2.432628 CGTCGACCAGGGCTTCAC 60.433 66.667 10.58 0.00 0.00 3.18
519 521 4.373116 GCGTCGACCAGGGCTTCA 62.373 66.667 10.58 0.00 0.00 3.02
523 525 2.660258 ATATTGGCGTCGACCAGGGC 62.660 60.000 10.58 9.24 41.82 5.19
524 526 0.179056 AATATTGGCGTCGACCAGGG 60.179 55.000 10.58 0.00 41.82 4.45
525 527 1.663695 AAATATTGGCGTCGACCAGG 58.336 50.000 10.58 0.00 41.82 4.45
526 528 3.051606 CAAAATATTGGCGTCGACCAG 57.948 47.619 10.58 0.00 41.82 4.00
537 539 5.153513 CACGTCTGTCCAACCAAAATATTG 58.846 41.667 0.00 0.00 36.25 1.90
538 540 4.217550 CCACGTCTGTCCAACCAAAATATT 59.782 41.667 0.00 0.00 0.00 1.28
539 541 3.756434 CCACGTCTGTCCAACCAAAATAT 59.244 43.478 0.00 0.00 0.00 1.28
540 542 3.142951 CCACGTCTGTCCAACCAAAATA 58.857 45.455 0.00 0.00 0.00 1.40
541 543 1.953686 CCACGTCTGTCCAACCAAAAT 59.046 47.619 0.00 0.00 0.00 1.82
542 544 1.384525 CCACGTCTGTCCAACCAAAA 58.615 50.000 0.00 0.00 0.00 2.44
543 545 0.464735 CCCACGTCTGTCCAACCAAA 60.465 55.000 0.00 0.00 0.00 3.28
544 546 1.147376 CCCACGTCTGTCCAACCAA 59.853 57.895 0.00 0.00 0.00 3.67
545 547 2.825982 CCCACGTCTGTCCAACCA 59.174 61.111 0.00 0.00 0.00 3.67
546 548 1.823169 TAGCCCACGTCTGTCCAACC 61.823 60.000 0.00 0.00 0.00 3.77
547 549 0.389948 CTAGCCCACGTCTGTCCAAC 60.390 60.000 0.00 0.00 0.00 3.77
548 550 1.541310 CCTAGCCCACGTCTGTCCAA 61.541 60.000 0.00 0.00 0.00 3.53
549 551 1.982395 CCTAGCCCACGTCTGTCCA 60.982 63.158 0.00 0.00 0.00 4.02
550 552 1.043673 ATCCTAGCCCACGTCTGTCC 61.044 60.000 0.00 0.00 0.00 4.02
551 553 0.386113 GATCCTAGCCCACGTCTGTC 59.614 60.000 0.00 0.00 0.00 3.51
552 554 1.043673 GGATCCTAGCCCACGTCTGT 61.044 60.000 3.84 0.00 0.00 3.41
553 555 1.043116 TGGATCCTAGCCCACGTCTG 61.043 60.000 14.23 0.00 0.00 3.51
554 556 0.325296 TTGGATCCTAGCCCACGTCT 60.325 55.000 14.23 0.00 31.11 4.18
555 557 0.539986 TTTGGATCCTAGCCCACGTC 59.460 55.000 14.23 0.00 31.11 4.34
556 558 0.252197 GTTTGGATCCTAGCCCACGT 59.748 55.000 14.23 0.00 31.11 4.49
557 559 0.251916 TGTTTGGATCCTAGCCCACG 59.748 55.000 14.23 0.00 31.11 4.94
558 560 2.019156 GCTGTTTGGATCCTAGCCCAC 61.019 57.143 14.23 0.92 31.11 4.61
559 561 0.255890 GCTGTTTGGATCCTAGCCCA 59.744 55.000 14.23 3.02 0.00 5.36
560 562 0.466372 GGCTGTTTGGATCCTAGCCC 60.466 60.000 26.15 11.99 46.29 5.19
561 563 3.102090 GGCTGTTTGGATCCTAGCC 57.898 57.895 24.08 24.08 46.04 3.93
562 564 0.466372 GGGGCTGTTTGGATCCTAGC 60.466 60.000 14.23 16.05 0.00 3.42
563 565 0.179045 CGGGGCTGTTTGGATCCTAG 60.179 60.000 14.23 7.35 0.00 3.02
564 566 0.619255 TCGGGGCTGTTTGGATCCTA 60.619 55.000 14.23 1.56 0.00 2.94
565 567 1.497309 TTCGGGGCTGTTTGGATCCT 61.497 55.000 14.23 0.00 0.00 3.24
566 568 1.001393 TTCGGGGCTGTTTGGATCC 60.001 57.895 4.20 4.20 0.00 3.36
567 569 0.322546 ACTTCGGGGCTGTTTGGATC 60.323 55.000 0.00 0.00 0.00 3.36
568 570 0.322546 GACTTCGGGGCTGTTTGGAT 60.323 55.000 0.00 0.00 0.00 3.41
569 571 1.072505 GACTTCGGGGCTGTTTGGA 59.927 57.895 0.00 0.00 0.00 3.53
570 572 0.537371 AAGACTTCGGGGCTGTTTGG 60.537 55.000 0.00 0.00 30.75 3.28
571 573 1.318576 AAAGACTTCGGGGCTGTTTG 58.681 50.000 0.00 0.00 30.75 2.93
572 574 2.067365 AAAAGACTTCGGGGCTGTTT 57.933 45.000 0.00 0.00 30.75 2.83
573 575 2.943036 TAAAAGACTTCGGGGCTGTT 57.057 45.000 0.00 0.00 34.30 3.16
574 576 2.304761 TCATAAAAGACTTCGGGGCTGT 59.695 45.455 0.00 0.00 30.75 4.40
575 577 2.939103 CTCATAAAAGACTTCGGGGCTG 59.061 50.000 0.00 0.00 30.75 4.85
576 578 2.838202 TCTCATAAAAGACTTCGGGGCT 59.162 45.455 0.00 0.00 32.36 5.19
577 579 3.261981 TCTCATAAAAGACTTCGGGGC 57.738 47.619 0.00 0.00 0.00 5.80
578 580 4.130118 CCATCTCATAAAAGACTTCGGGG 58.870 47.826 0.00 0.00 0.00 5.73
579 581 3.561725 GCCATCTCATAAAAGACTTCGGG 59.438 47.826 0.00 0.00 0.00 5.14
580 582 3.561725 GGCCATCTCATAAAAGACTTCGG 59.438 47.826 0.00 0.00 0.00 4.30
581 583 3.246226 CGGCCATCTCATAAAAGACTTCG 59.754 47.826 2.24 0.00 0.00 3.79
582 584 3.561725 CCGGCCATCTCATAAAAGACTTC 59.438 47.826 2.24 0.00 0.00 3.01
744 2601 3.244033 AGCGAGAAGAGATGTGAAAGG 57.756 47.619 0.00 0.00 0.00 3.11
751 2608 5.158101 TCGTTAGTTAGCGAGAAGAGATG 57.842 43.478 0.00 0.00 34.06 2.90
755 2612 5.556355 TGAATCGTTAGTTAGCGAGAAGA 57.444 39.130 4.53 0.00 41.94 2.87
758 2615 5.034797 CACATGAATCGTTAGTTAGCGAGA 58.965 41.667 0.00 0.00 41.94 4.04
759 2616 5.034797 TCACATGAATCGTTAGTTAGCGAG 58.965 41.667 0.00 0.00 41.94 5.03
768 2625 4.986034 ACTTCGTGTTCACATGAATCGTTA 59.014 37.500 13.70 9.01 46.90 3.18
846 3251 1.665161 CGTCGTTTGAGCGGAGTAGTT 60.665 52.381 0.00 0.00 0.00 2.24
851 3256 2.426183 CGTCGTCGTTTGAGCGGAG 61.426 63.158 0.00 0.00 0.00 4.63
853 3258 2.784957 TACCGTCGTCGTTTGAGCGG 62.785 60.000 0.71 0.00 39.50 5.52
854 3259 0.795735 ATACCGTCGTCGTTTGAGCG 60.796 55.000 0.71 0.00 35.01 5.03
855 3260 0.638746 CATACCGTCGTCGTTTGAGC 59.361 55.000 0.71 0.00 35.01 4.26
856 3261 0.638746 GCATACCGTCGTCGTTTGAG 59.361 55.000 0.71 0.00 35.01 3.02
941 3347 4.388499 GGGAAGTGAAGGCGCGGA 62.388 66.667 8.83 0.00 0.00 5.54
977 3387 2.409651 GGACGTCTCAGGCTAGCG 59.590 66.667 16.46 0.00 0.00 4.26
987 3427 1.668101 GAGGAATGCGAGGGACGTCT 61.668 60.000 16.46 0.00 44.60 4.18
992 3435 0.175760 CGAAAGAGGAATGCGAGGGA 59.824 55.000 0.00 0.00 0.00 4.20
1145 3589 3.420222 CTTTTCGACGCCGATGCCG 62.420 63.158 0.00 0.00 45.10 5.69
1199 3643 3.119101 GGAAGAAGCTGATCGTCCAGTTA 60.119 47.826 13.59 0.00 44.44 2.24
1277 3721 3.181329 TCTGACATCCTTTTCTGGGCTA 58.819 45.455 0.00 0.00 0.00 3.93
1362 3806 5.116882 GCATTTCGGAGTGAAGGTATACTT 58.883 41.667 2.25 0.00 43.65 2.24
1376 3820 2.285083 CCCTGATAAACGCATTTCGGA 58.715 47.619 0.00 0.00 43.86 4.55
1379 3823 4.787598 CATAGCCCTGATAAACGCATTTC 58.212 43.478 0.00 0.00 0.00 2.17
1393 3837 1.069823 CGATGAACTGAGCATAGCCCT 59.930 52.381 0.00 0.00 0.00 5.19
1695 4305 1.198637 GACAACCTTGATGCTCTGTGC 59.801 52.381 0.00 0.00 43.25 4.57
1840 4461 5.148502 CCACTAACCCATCTAGTCCATACT 58.851 45.833 0.00 0.00 39.91 2.12
1915 4537 4.479619 CTGCTCTGCTAAAACCAATGTTC 58.520 43.478 0.00 0.00 32.15 3.18
2011 4633 7.008021 ACCAAATGCTTAAATCCATCAGTTT 57.992 32.000 0.00 0.00 0.00 2.66
2072 4694 9.495572 CAGGACTAGTCAGTAAGAGAAATTTTT 57.504 33.333 23.91 0.00 34.21 1.94
2083 4705 5.725338 TCCTCTAGACAGGACTAGTCAGTAA 59.275 44.000 23.91 11.95 37.68 2.24
2161 4783 2.661195 GCGTCAAAATGCATACACCAAC 59.339 45.455 0.00 0.00 37.37 3.77
2220 4842 5.006552 CGAGACAATTTGTTTTGCCAAATGT 59.993 36.000 3.08 0.00 42.63 2.71
2340 5241 9.314321 ACAATACTCAGATAAATGTTCTTACCG 57.686 33.333 0.00 0.00 0.00 4.02
2357 5258 6.051074 CAGATCTACATTGCCACAATACTCA 58.949 40.000 0.00 0.00 0.00 3.41
2377 5278 9.739276 TTCATTGGTTTGAGTAATTCTACAGAT 57.261 29.630 0.00 0.00 0.00 2.90
2432 5333 8.603181 GTGCAGTTTTACAAAAGAAATGATGTT 58.397 29.630 0.00 0.00 0.00 2.71
2494 5395 4.732784 CCGACGATTTGAAACATCCAAAT 58.267 39.130 0.00 0.00 44.23 2.32
2496 5397 2.095466 GCCGACGATTTGAAACATCCAA 60.095 45.455 0.00 0.00 0.00 3.53
2507 5408 5.560966 AATGTAAAGATTGCCGACGATTT 57.439 34.783 0.00 0.00 0.00 2.17
2510 5411 5.113383 ACATAATGTAAAGATTGCCGACGA 58.887 37.500 0.00 0.00 0.00 4.20
2511 5412 5.403897 ACATAATGTAAAGATTGCCGACG 57.596 39.130 0.00 0.00 0.00 5.12
2512 5413 7.438459 ACTCTACATAATGTAAAGATTGCCGAC 59.562 37.037 0.00 0.00 31.67 4.79
2513 5414 7.497595 ACTCTACATAATGTAAAGATTGCCGA 58.502 34.615 0.00 0.00 31.67 5.54
2514 5415 7.715265 ACTCTACATAATGTAAAGATTGCCG 57.285 36.000 0.00 0.00 31.67 5.69
2528 5429 9.924650 GTCCTCTTTCAAACTTACTCTACATAA 57.075 33.333 0.00 0.00 0.00 1.90
2529 5430 9.310449 AGTCCTCTTTCAAACTTACTCTACATA 57.690 33.333 0.00 0.00 0.00 2.29
2546 5447 7.423844 AAAGGAAAATTTGTGAGTCCTCTTT 57.576 32.000 8.48 0.00 37.75 2.52
2549 5450 6.573434 ACAAAAGGAAAATTTGTGAGTCCTC 58.427 36.000 8.48 0.00 46.26 3.71
2550 5451 6.544928 ACAAAAGGAAAATTTGTGAGTCCT 57.455 33.333 3.00 3.00 46.26 3.85
2581 5482 4.457466 TCTACAAACCCCAAAAGACTGAC 58.543 43.478 0.00 0.00 0.00 3.51
2590 5491 1.764134 ACACGACTCTACAAACCCCAA 59.236 47.619 0.00 0.00 0.00 4.12
2626 5527 2.312390 GGTTTTCCCACTTGCCTTGTA 58.688 47.619 0.00 0.00 0.00 2.41
2661 5567 4.526970 TCTCTATGGATTTTCCCACTTGC 58.473 43.478 0.00 0.00 39.34 4.01
2662 5568 7.466746 TTTTCTCTATGGATTTTCCCACTTG 57.533 36.000 0.00 0.00 39.34 3.16
2664 5570 7.470192 TCTTTTTCTCTATGGATTTTCCCACT 58.530 34.615 0.00 0.00 39.34 4.00
2665 5571 7.703058 TCTTTTTCTCTATGGATTTTCCCAC 57.297 36.000 0.00 0.00 39.34 4.61
2666 5572 7.147846 GCATCTTTTTCTCTATGGATTTTCCCA 60.148 37.037 0.00 0.00 41.05 4.37
2667 5573 7.205992 GCATCTTTTTCTCTATGGATTTTCCC 58.794 38.462 0.00 0.00 35.03 3.97
2669 5575 8.005192 AGGCATCTTTTTCTCTATGGATTTTC 57.995 34.615 0.00 0.00 0.00 2.29
2687 5593 2.465813 ACTAGCTGACTTGAGGCATCT 58.534 47.619 0.00 0.00 0.00 2.90
2688 5594 2.977772 ACTAGCTGACTTGAGGCATC 57.022 50.000 0.00 0.00 0.00 3.91
2689 5595 2.836981 AGAACTAGCTGACTTGAGGCAT 59.163 45.455 0.00 0.00 0.00 4.40
2690 5596 2.028658 CAGAACTAGCTGACTTGAGGCA 60.029 50.000 0.00 0.00 38.14 4.75
2691 5597 2.232452 TCAGAACTAGCTGACTTGAGGC 59.768 50.000 0.00 0.00 39.84 4.70
2692 5598 4.734398 ATCAGAACTAGCTGACTTGAGG 57.266 45.455 0.00 0.00 46.72 3.86
2696 5602 5.936956 CCTTCAAATCAGAACTAGCTGACTT 59.063 40.000 0.00 0.00 46.72 3.01
2697 5603 5.012561 ACCTTCAAATCAGAACTAGCTGACT 59.987 40.000 0.00 0.00 46.72 3.41
2698 5604 5.241662 ACCTTCAAATCAGAACTAGCTGAC 58.758 41.667 0.00 0.00 46.72 3.51
2847 7482 4.018597 AGGCATGGAGATTGATAGGAATCC 60.019 45.833 0.00 0.00 33.46 3.01
2966 7601 2.840651 CAGGGTTCTCCATCCTAGTTGT 59.159 50.000 0.00 0.00 38.24 3.32
3229 7869 4.696877 CACTGGCAATGACTGATTCACTAA 59.303 41.667 0.00 0.00 36.92 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.