Multiple sequence alignment - TraesCS2A01G468100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G468100 chr2A 100.000 3854 0 0 1 3854 712185853 712182000 0.000000e+00 7118.0
1 TraesCS2A01G468100 chr2A 90.196 51 4 1 1835 1885 712184127 712184078 8.940000e-07 65.8
2 TraesCS2A01G468100 chr2D 94.877 2030 60 11 1848 3854 649360621 649358613 0.000000e+00 3133.0
3 TraesCS2A01G468100 chr2D 95.386 932 32 2 702 1623 649361572 649360642 0.000000e+00 1472.0
4 TraesCS2A01G468100 chr2D 90.650 738 50 12 703 1437 6564728 6565449 0.000000e+00 963.0
5 TraesCS2A01G468100 chr3A 93.625 1898 105 8 1967 3854 688023890 688021999 0.000000e+00 2820.0
6 TraesCS2A01G468100 chr7D 90.355 2001 112 28 1872 3854 626619932 626621869 0.000000e+00 2551.0
7 TraesCS2A01G468100 chr7D 92.426 1109 58 10 1901 2998 501795605 501796698 0.000000e+00 1559.0
8 TraesCS2A01G468100 chr7D 89.912 1130 63 21 703 1814 501794502 501795598 0.000000e+00 1408.0
9 TraesCS2A01G468100 chr7D 91.806 720 45 7 3143 3854 459876533 459877246 0.000000e+00 990.0
10 TraesCS2A01G468100 chr7D 90.028 722 57 8 3143 3854 501796847 501797563 0.000000e+00 920.0
11 TraesCS2A01G468100 chr7D 94.432 431 14 5 1393 1814 626619512 626619941 0.000000e+00 654.0
12 TraesCS2A01G468100 chr7A 87.500 1616 107 24 1872 3444 618078006 618076443 0.000000e+00 1777.0
13 TraesCS2A01G468100 chr7A 90.869 1128 76 11 703 1814 618079113 618077997 0.000000e+00 1487.0
14 TraesCS2A01G468100 chr7A 100.000 29 0 0 19 47 604377391 604377419 2.000000e-03 54.7
15 TraesCS2A01G468100 chr4D 92.997 1171 47 11 1872 3032 12304783 12305928 0.000000e+00 1676.0
16 TraesCS2A01G468100 chr4D 91.897 1123 65 11 704 1814 12303684 12304792 0.000000e+00 1546.0
17 TraesCS2A01G468100 chr4D 90.234 1024 70 9 1915 2923 434988485 434989493 0.000000e+00 1310.0
18 TraesCS2A01G468100 chr4D 91.180 737 43 13 703 1437 434987408 434988124 0.000000e+00 981.0
19 TraesCS2A01G468100 chr4D 91.310 725 46 9 3143 3854 12305992 12306712 0.000000e+00 974.0
20 TraesCS2A01G468100 chr4D 92.835 656 41 5 3201 3854 497687254 497687905 0.000000e+00 946.0
21 TraesCS2A01G468100 chr4D 84.141 1053 74 33 735 1762 51790829 51789845 0.000000e+00 933.0
22 TraesCS2A01G468100 chr1A 92.703 1110 56 8 1901 2998 574237583 574238679 0.000000e+00 1578.0
23 TraesCS2A01G468100 chr1A 86.372 1130 86 37 702 1814 574236498 574237576 0.000000e+00 1171.0
24 TraesCS2A01G468100 chr1B 90.414 1064 76 9 1901 2953 610631446 610632494 0.000000e+00 1376.0
25 TraesCS2A01G468100 chr1B 88.975 771 74 7 703 1471 610566843 610567604 0.000000e+00 942.0
26 TraesCS2A01G468100 chr1B 87.458 295 26 6 1530 1814 610631146 610631439 2.870000e-86 329.0
27 TraesCS2A01G468100 chr1B 88.764 89 7 3 1732 1818 665223157 665223244 5.270000e-19 106.0
28 TraesCS2A01G468100 chr6A 90.344 1046 69 11 1872 2908 63179497 63180519 0.000000e+00 1343.0
29 TraesCS2A01G468100 chr6A 91.480 669 49 7 3191 3854 53304874 53304209 0.000000e+00 913.0
30 TraesCS2A01G468100 chr6A 85.132 417 22 17 1407 1814 63179121 63179506 1.300000e-104 390.0
31 TraesCS2A01G468100 chr3D 90.527 1024 67 9 1915 2923 580704394 580705402 0.000000e+00 1327.0
32 TraesCS2A01G468100 chr3D 90.823 741 48 12 702 1437 32372729 32372004 0.000000e+00 974.0
33 TraesCS2A01G468100 chr6B 88.468 1136 80 12 1872 2998 678710718 678709625 0.000000e+00 1325.0
34 TraesCS2A01G468100 chr6B 90.066 302 17 4 1522 1814 678711006 678710709 2.810000e-101 379.0
35 TraesCS2A01G468100 chr5D 87.957 1121 81 20 703 1814 489064961 489063886 0.000000e+00 1273.0
36 TraesCS2A01G468100 chr5D 92.222 720 43 6 3143 3854 494290868 494290154 0.000000e+00 1007.0
37 TraesCS2A01G468100 chr5B 88.477 998 66 24 2046 3032 690044934 690043975 0.000000e+00 1160.0
38 TraesCS2A01G468100 chr5B 90.859 733 51 11 704 1431 690057870 690057149 0.000000e+00 968.0
39 TraesCS2A01G468100 chr5B 90.588 85 5 3 1732 1814 549164542 549164459 4.070000e-20 110.0
40 TraesCS2A01G468100 chr1D 90.946 740 48 11 702 1437 492587469 492588193 0.000000e+00 977.0
41 TraesCS2A01G468100 chr7B 90.871 723 52 8 3143 3853 543847072 543847792 0.000000e+00 957.0
42 TraesCS2A01G468100 chr7B 87.805 328 18 9 1480 1797 536987347 536987032 7.870000e-97 364.0
43 TraesCS2A01G468100 chr3B 87.640 89 8 3 1732 1818 465328022 465327935 2.450000e-17 100.0
44 TraesCS2A01G468100 chr3B 92.593 54 4 0 1418 1471 727811037 727811090 1.150000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G468100 chr2A 712182000 712185853 3853 True 3591.900000 7118 95.098000 1 3854 2 chr2A.!!$R1 3853
1 TraesCS2A01G468100 chr2D 649358613 649361572 2959 True 2302.500000 3133 95.131500 702 3854 2 chr2D.!!$R1 3152
2 TraesCS2A01G468100 chr2D 6564728 6565449 721 False 963.000000 963 90.650000 703 1437 1 chr2D.!!$F1 734
3 TraesCS2A01G468100 chr3A 688021999 688023890 1891 True 2820.000000 2820 93.625000 1967 3854 1 chr3A.!!$R1 1887
4 TraesCS2A01G468100 chr7D 626619512 626621869 2357 False 1602.500000 2551 92.393500 1393 3854 2 chr7D.!!$F3 2461
5 TraesCS2A01G468100 chr7D 501794502 501797563 3061 False 1295.666667 1559 90.788667 703 3854 3 chr7D.!!$F2 3151
6 TraesCS2A01G468100 chr7D 459876533 459877246 713 False 990.000000 990 91.806000 3143 3854 1 chr7D.!!$F1 711
7 TraesCS2A01G468100 chr7A 618076443 618079113 2670 True 1632.000000 1777 89.184500 703 3444 2 chr7A.!!$R1 2741
8 TraesCS2A01G468100 chr4D 12303684 12306712 3028 False 1398.666667 1676 92.068000 704 3854 3 chr4D.!!$F2 3150
9 TraesCS2A01G468100 chr4D 434987408 434989493 2085 False 1145.500000 1310 90.707000 703 2923 2 chr4D.!!$F3 2220
10 TraesCS2A01G468100 chr4D 497687254 497687905 651 False 946.000000 946 92.835000 3201 3854 1 chr4D.!!$F1 653
11 TraesCS2A01G468100 chr4D 51789845 51790829 984 True 933.000000 933 84.141000 735 1762 1 chr4D.!!$R1 1027
12 TraesCS2A01G468100 chr1A 574236498 574238679 2181 False 1374.500000 1578 89.537500 702 2998 2 chr1A.!!$F1 2296
13 TraesCS2A01G468100 chr1B 610566843 610567604 761 False 942.000000 942 88.975000 703 1471 1 chr1B.!!$F1 768
14 TraesCS2A01G468100 chr1B 610631146 610632494 1348 False 852.500000 1376 88.936000 1530 2953 2 chr1B.!!$F3 1423
15 TraesCS2A01G468100 chr6A 53304209 53304874 665 True 913.000000 913 91.480000 3191 3854 1 chr6A.!!$R1 663
16 TraesCS2A01G468100 chr6A 63179121 63180519 1398 False 866.500000 1343 87.738000 1407 2908 2 chr6A.!!$F1 1501
17 TraesCS2A01G468100 chr3D 580704394 580705402 1008 False 1327.000000 1327 90.527000 1915 2923 1 chr3D.!!$F1 1008
18 TraesCS2A01G468100 chr3D 32372004 32372729 725 True 974.000000 974 90.823000 702 1437 1 chr3D.!!$R1 735
19 TraesCS2A01G468100 chr6B 678709625 678711006 1381 True 852.000000 1325 89.267000 1522 2998 2 chr6B.!!$R1 1476
20 TraesCS2A01G468100 chr5D 489063886 489064961 1075 True 1273.000000 1273 87.957000 703 1814 1 chr5D.!!$R1 1111
21 TraesCS2A01G468100 chr5D 494290154 494290868 714 True 1007.000000 1007 92.222000 3143 3854 1 chr5D.!!$R2 711
22 TraesCS2A01G468100 chr5B 690043975 690044934 959 True 1160.000000 1160 88.477000 2046 3032 1 chr5B.!!$R2 986
23 TraesCS2A01G468100 chr5B 690057149 690057870 721 True 968.000000 968 90.859000 704 1431 1 chr5B.!!$R3 727
24 TraesCS2A01G468100 chr1D 492587469 492588193 724 False 977.000000 977 90.946000 702 1437 1 chr1D.!!$F1 735
25 TraesCS2A01G468100 chr7B 543847072 543847792 720 False 957.000000 957 90.871000 3143 3853 1 chr7B.!!$F1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 506 0.037046 GGTCCGGCTCCTCGTAAAAA 60.037 55.000 0.00 0.00 0.00 1.94 F
521 522 0.603975 AAAAGACCTCGGCTGTCAGC 60.604 55.000 16.93 16.93 41.46 4.26 F
669 670 1.205655 TCACTGATCTTTGCTCCGGAG 59.794 52.381 27.83 27.83 0.00 4.63 F
948 972 1.302511 CGCACCAAGTAGCTGGGTT 60.303 57.895 0.00 0.00 35.20 4.11 F
2175 2358 2.621055 TGTGGTTGCCAACTATGACAAC 59.379 45.455 7.62 0.15 45.80 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 2259 1.342819 CTCCTAGCATGCCTACTGTCC 59.657 57.143 15.66 0.00 0.00 4.02 R
2147 2330 1.963515 AGTTGGCAACCACATTCCTTC 59.036 47.619 25.81 0.00 30.78 3.46 R
2461 2656 2.093288 CCTTGCTGAGCTCATCAACCTA 60.093 50.000 25.11 8.86 37.52 3.08 R
2569 2765 2.924421 CTGGAGCTTTAACTCATCCCC 58.076 52.381 0.00 0.00 38.50 4.81 R
3321 3674 0.326264 GAAGCTGGGAGCCTGAGAAA 59.674 55.000 0.00 0.00 43.77 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 9.958234 TTTGTGAAATTTATTCTGAATTCACGA 57.042 25.926 20.24 17.72 32.93 4.35
62 63 9.958234 TTGTGAAATTTATTCTGAATTCACGAA 57.042 25.926 20.24 17.13 32.93 3.85
63 64 9.393249 TGTGAAATTTATTCTGAATTCACGAAC 57.607 29.630 20.24 9.43 32.93 3.95
64 65 8.567221 GTGAAATTTATTCTGAATTCACGAACG 58.433 33.333 17.15 4.42 0.00 3.95
65 66 8.286800 TGAAATTTATTCTGAATTCACGAACGT 58.713 29.630 17.15 9.25 0.00 3.99
66 67 9.113876 GAAATTTATTCTGAATTCACGAACGTT 57.886 29.630 17.15 0.00 0.00 3.99
69 70 9.916397 ATTTATTCTGAATTCACGAACGTTATC 57.084 29.630 17.15 0.00 0.00 1.75
71 72 4.725359 TCTGAATTCACGAACGTTATCGA 58.275 39.130 16.02 2.97 45.48 3.59
72 73 4.556135 TCTGAATTCACGAACGTTATCGAC 59.444 41.667 16.02 0.00 45.48 4.20
131 132 8.558973 TTTGTGAACATTTTTGGATTCAAAGT 57.441 26.923 0.00 0.00 42.93 2.66
132 133 7.769272 TGTGAACATTTTTGGATTCAAAGTC 57.231 32.000 0.00 0.00 42.93 3.01
133 134 7.326454 TGTGAACATTTTTGGATTCAAAGTCA 58.674 30.769 0.00 0.00 42.93 3.41
134 135 7.277539 TGTGAACATTTTTGGATTCAAAGTCAC 59.722 33.333 15.42 15.42 42.93 3.67
135 136 7.277539 GTGAACATTTTTGGATTCAAAGTCACA 59.722 33.333 16.46 7.90 42.93 3.58
136 137 7.821359 TGAACATTTTTGGATTCAAAGTCACAA 59.179 29.630 0.00 0.00 42.93 3.33
137 138 7.538303 ACATTTTTGGATTCAAAGTCACAAC 57.462 32.000 0.00 0.00 42.93 3.32
138 139 6.538381 ACATTTTTGGATTCAAAGTCACAACC 59.462 34.615 0.00 0.00 42.93 3.77
139 140 5.930837 TTTTGGATTCAAAGTCACAACCT 57.069 34.783 0.00 0.00 42.93 3.50
140 141 5.930837 TTTGGATTCAAAGTCACAACCTT 57.069 34.783 0.00 0.00 37.89 3.50
141 142 5.930837 TTGGATTCAAAGTCACAACCTTT 57.069 34.783 0.00 0.00 32.48 3.11
142 143 5.930837 TGGATTCAAAGTCACAACCTTTT 57.069 34.783 0.00 0.00 29.89 2.27
143 144 5.659463 TGGATTCAAAGTCACAACCTTTTG 58.341 37.500 0.00 0.00 38.83 2.44
144 145 5.420421 TGGATTCAAAGTCACAACCTTTTGA 59.580 36.000 0.00 0.00 37.66 2.69
145 146 6.071108 TGGATTCAAAGTCACAACCTTTTGAA 60.071 34.615 12.01 12.01 46.95 2.69
150 151 7.363205 CAAAGTCACAACCTTTTGAATTTGT 57.637 32.000 14.52 0.00 45.77 2.83
151 152 6.966435 AAGTCACAACCTTTTGAATTTGTG 57.034 33.333 6.92 6.92 46.71 3.33
158 159 8.791327 ACAACCTTTTGAATTTGTGAAGATTT 57.209 26.923 0.00 0.00 36.48 2.17
159 160 9.230122 ACAACCTTTTGAATTTGTGAAGATTTT 57.770 25.926 0.00 0.00 36.48 1.82
265 266 8.928270 ACACGGACATTGTTAAAATTTACAAA 57.072 26.923 9.88 0.00 37.75 2.83
266 267 9.535878 ACACGGACATTGTTAAAATTTACAAAT 57.464 25.926 9.88 3.16 37.75 2.32
320 321 7.776933 TTGAATGTAGATGTGTATTGAGAGC 57.223 36.000 0.00 0.00 0.00 4.09
321 322 6.877236 TGAATGTAGATGTGTATTGAGAGCA 58.123 36.000 0.00 0.00 0.00 4.26
322 323 7.503549 TGAATGTAGATGTGTATTGAGAGCAT 58.496 34.615 0.00 0.00 0.00 3.79
323 324 8.641541 TGAATGTAGATGTGTATTGAGAGCATA 58.358 33.333 0.00 0.00 0.00 3.14
324 325 8.824159 AATGTAGATGTGTATTGAGAGCATAC 57.176 34.615 0.00 0.00 0.00 2.39
325 326 6.438763 TGTAGATGTGTATTGAGAGCATACG 58.561 40.000 0.00 0.00 0.00 3.06
326 327 5.521906 AGATGTGTATTGAGAGCATACGT 57.478 39.130 0.00 0.00 0.00 3.57
327 328 5.524284 AGATGTGTATTGAGAGCATACGTC 58.476 41.667 0.00 0.00 0.00 4.34
328 329 4.983671 TGTGTATTGAGAGCATACGTCT 57.016 40.909 0.00 0.00 0.00 4.18
329 330 4.921547 TGTGTATTGAGAGCATACGTCTC 58.078 43.478 0.00 0.00 40.87 3.36
330 331 3.969352 GTGTATTGAGAGCATACGTCTCG 59.031 47.826 0.00 0.00 43.03 4.04
331 332 3.626217 TGTATTGAGAGCATACGTCTCGT 59.374 43.478 0.00 0.00 43.03 4.18
332 333 2.544480 TTGAGAGCATACGTCTCGTG 57.456 50.000 0.00 0.00 43.03 4.35
333 334 1.450025 TGAGAGCATACGTCTCGTGT 58.550 50.000 0.00 0.00 43.03 4.49
334 335 2.624636 TGAGAGCATACGTCTCGTGTA 58.375 47.619 0.00 0.00 43.03 2.90
335 336 3.203716 TGAGAGCATACGTCTCGTGTAT 58.796 45.455 0.00 0.00 43.03 2.29
339 340 4.276183 AGAGCATACGTCTCGTGTATGATT 59.724 41.667 15.24 4.40 45.82 2.57
340 341 4.976731 GAGCATACGTCTCGTGTATGATTT 59.023 41.667 15.24 2.34 45.82 2.17
341 342 6.017357 AGAGCATACGTCTCGTGTATGATTTA 60.017 38.462 15.24 0.00 45.82 1.40
342 343 6.635641 GAGCATACGTCTCGTGTATGATTTAA 59.364 38.462 15.24 0.00 45.82 1.52
343 344 7.149112 GAGCATACGTCTCGTGTATGATTTAAG 60.149 40.741 15.24 0.00 45.82 1.85
345 346 7.909777 ATACGTCTCGTGTATGATTTAAGTG 57.090 36.000 0.00 0.00 41.39 3.16
346 347 5.706916 ACGTCTCGTGTATGATTTAAGTGT 58.293 37.500 0.00 0.00 39.18 3.55
347 348 6.845302 ACGTCTCGTGTATGATTTAAGTGTA 58.155 36.000 0.00 0.00 39.18 2.90
348 349 7.307694 ACGTCTCGTGTATGATTTAAGTGTAA 58.692 34.615 0.00 0.00 39.18 2.41
349 350 7.972277 ACGTCTCGTGTATGATTTAAGTGTAAT 59.028 33.333 0.00 0.00 39.18 1.89
350 351 8.469902 CGTCTCGTGTATGATTTAAGTGTAATC 58.530 37.037 0.00 0.00 33.58 1.75
351 352 9.297586 GTCTCGTGTATGATTTAAGTGTAATCA 57.702 33.333 0.00 0.00 43.80 2.57
355 356 9.864034 CGTGTATGATTTAAGTGTAATCATTCC 57.136 33.333 14.16 8.02 45.67 3.01
360 361 8.236585 TGATTTAAGTGTAATCATTCCATGGG 57.763 34.615 13.02 0.00 37.15 4.00
361 362 8.058235 TGATTTAAGTGTAATCATTCCATGGGA 58.942 33.333 13.02 2.34 37.15 4.37
362 363 7.880160 TTTAAGTGTAATCATTCCATGGGAG 57.120 36.000 13.02 2.07 31.21 4.30
363 364 3.825328 AGTGTAATCATTCCATGGGAGC 58.175 45.455 13.02 0.00 31.21 4.70
364 365 3.461085 AGTGTAATCATTCCATGGGAGCT 59.539 43.478 13.02 0.00 31.21 4.09
365 366 3.567164 GTGTAATCATTCCATGGGAGCTG 59.433 47.826 13.02 0.00 31.21 4.24
366 367 1.700955 AATCATTCCATGGGAGCTGC 58.299 50.000 13.02 0.00 31.21 5.25
367 368 0.178970 ATCATTCCATGGGAGCTGCC 60.179 55.000 18.95 18.95 31.21 4.85
368 369 1.076559 CATTCCATGGGAGCTGCCA 60.077 57.895 30.51 30.51 38.95 4.92
369 370 0.469331 CATTCCATGGGAGCTGCCAT 60.469 55.000 32.18 32.18 38.95 4.40
370 371 0.469331 ATTCCATGGGAGCTGCCATG 60.469 55.000 44.09 44.09 42.20 3.66
372 373 4.923068 CATGGGAGCTGCCATGAT 57.077 55.556 46.96 25.16 44.43 2.45
373 374 2.341452 CATGGGAGCTGCCATGATG 58.659 57.895 46.96 30.88 44.43 3.07
374 375 0.467474 CATGGGAGCTGCCATGATGT 60.467 55.000 46.96 24.43 44.43 3.06
375 376 1.142936 ATGGGAGCTGCCATGATGTA 58.857 50.000 36.04 9.97 38.95 2.29
376 377 0.181114 TGGGAGCTGCCATGATGTAC 59.819 55.000 24.87 0.00 38.95 2.90
377 378 0.536006 GGGAGCTGCCATGATGTACC 60.536 60.000 20.97 0.00 38.95 3.34
378 379 0.181114 GGAGCTGCCATGATGTACCA 59.819 55.000 0.00 0.00 36.34 3.25
379 380 1.590932 GAGCTGCCATGATGTACCAG 58.409 55.000 0.00 0.00 0.00 4.00
380 381 1.139654 GAGCTGCCATGATGTACCAGA 59.860 52.381 0.00 0.00 0.00 3.86
381 382 1.134280 AGCTGCCATGATGTACCAGAC 60.134 52.381 0.00 2.26 0.00 3.51
382 383 1.575244 CTGCCATGATGTACCAGACG 58.425 55.000 0.00 0.00 0.00 4.18
383 384 0.901827 TGCCATGATGTACCAGACGT 59.098 50.000 0.00 0.00 0.00 4.34
384 385 2.100749 CTGCCATGATGTACCAGACGTA 59.899 50.000 0.00 0.00 0.00 3.57
385 386 2.100749 TGCCATGATGTACCAGACGTAG 59.899 50.000 0.00 0.00 0.00 3.51
386 387 2.743938 CCATGATGTACCAGACGTAGC 58.256 52.381 0.00 0.00 0.00 3.58
387 388 2.100749 CCATGATGTACCAGACGTAGCA 59.899 50.000 0.00 0.00 0.00 3.49
388 389 3.243873 CCATGATGTACCAGACGTAGCAT 60.244 47.826 0.00 0.00 0.00 3.79
389 390 3.710326 TGATGTACCAGACGTAGCATC 57.290 47.619 0.00 0.00 36.74 3.91
390 391 2.032924 TGATGTACCAGACGTAGCATCG 59.967 50.000 0.00 0.00 37.79 3.84
391 392 1.741528 TGTACCAGACGTAGCATCGA 58.258 50.000 7.49 0.00 34.70 3.59
392 393 2.294979 TGTACCAGACGTAGCATCGAT 58.705 47.619 7.49 0.00 34.70 3.59
393 394 2.686405 TGTACCAGACGTAGCATCGATT 59.314 45.455 0.00 0.00 34.70 3.34
394 395 3.878699 TGTACCAGACGTAGCATCGATTA 59.121 43.478 0.00 0.00 34.70 1.75
395 396 3.351020 ACCAGACGTAGCATCGATTAC 57.649 47.619 0.00 0.00 34.70 1.89
396 397 2.286831 ACCAGACGTAGCATCGATTACG 60.287 50.000 21.99 21.99 45.91 3.18
402 403 3.360533 CGTAGCATCGATTACGTCAAGT 58.639 45.455 17.52 0.00 38.21 3.16
403 404 3.177838 CGTAGCATCGATTACGTCAAGTG 59.822 47.826 17.52 0.00 38.21 3.16
404 405 3.503827 AGCATCGATTACGTCAAGTGA 57.496 42.857 0.00 0.00 40.69 3.41
405 406 3.845178 AGCATCGATTACGTCAAGTGAA 58.155 40.909 0.00 0.00 40.69 3.18
406 407 3.859961 AGCATCGATTACGTCAAGTGAAG 59.140 43.478 0.00 0.00 40.69 3.02
407 408 3.612860 GCATCGATTACGTCAAGTGAAGT 59.387 43.478 0.00 5.25 39.87 3.01
408 409 4.796830 GCATCGATTACGTCAAGTGAAGTA 59.203 41.667 0.00 3.38 37.84 2.24
409 410 5.275788 GCATCGATTACGTCAAGTGAAGTAC 60.276 44.000 6.60 0.00 38.40 2.73
410 411 5.618056 TCGATTACGTCAAGTGAAGTACT 57.382 39.130 6.60 2.45 38.40 2.73
411 412 6.726258 TCGATTACGTCAAGTGAAGTACTA 57.274 37.500 6.60 0.00 38.40 1.82
412 413 6.537566 TCGATTACGTCAAGTGAAGTACTAC 58.462 40.000 6.60 0.00 38.40 2.73
413 414 5.447214 CGATTACGTCAAGTGAAGTACTACG 59.553 44.000 9.85 9.85 43.57 3.51
414 415 5.922739 TTACGTCAAGTGAAGTACTACGA 57.077 39.130 16.61 1.16 41.60 3.43
415 416 6.486253 TTACGTCAAGTGAAGTACTACGAT 57.514 37.500 16.61 5.99 41.60 3.73
416 417 4.720090 ACGTCAAGTGAAGTACTACGATG 58.280 43.478 16.61 8.18 41.60 3.84
417 418 4.214971 ACGTCAAGTGAAGTACTACGATGT 59.785 41.667 16.61 6.08 41.60 3.06
418 419 4.553815 CGTCAAGTGAAGTACTACGATGTG 59.446 45.833 6.29 0.00 41.60 3.21
419 420 4.323868 GTCAAGTGAAGTACTACGATGTGC 59.676 45.833 0.00 0.00 39.18 4.57
420 421 4.217767 TCAAGTGAAGTACTACGATGTGCT 59.782 41.667 0.00 0.00 39.18 4.40
421 422 4.785511 AGTGAAGTACTACGATGTGCTT 57.214 40.909 13.10 13.10 43.57 3.91
429 430 7.932120 AGTACTACGATGTGCTTCATTAATC 57.068 36.000 0.00 0.00 36.83 1.75
430 431 5.890110 ACTACGATGTGCTTCATTAATCG 57.110 39.130 0.00 0.00 44.26 3.34
431 432 3.592381 ACGATGTGCTTCATTAATCGC 57.408 42.857 3.48 0.00 42.89 4.58
432 433 3.198068 ACGATGTGCTTCATTAATCGCT 58.802 40.909 3.48 0.00 42.89 4.93
433 434 4.368315 ACGATGTGCTTCATTAATCGCTA 58.632 39.130 3.48 0.00 42.89 4.26
434 435 4.991056 ACGATGTGCTTCATTAATCGCTAT 59.009 37.500 3.48 0.00 42.89 2.97
435 436 5.119279 ACGATGTGCTTCATTAATCGCTATC 59.881 40.000 3.48 0.00 42.89 2.08
436 437 5.347093 CGATGTGCTTCATTAATCGCTATCT 59.653 40.000 0.00 0.00 36.83 1.98
437 438 6.128715 CGATGTGCTTCATTAATCGCTATCTT 60.129 38.462 0.00 0.00 36.83 2.40
438 439 6.530913 TGTGCTTCATTAATCGCTATCTTC 57.469 37.500 0.00 0.00 0.00 2.87
439 440 6.048509 TGTGCTTCATTAATCGCTATCTTCA 58.951 36.000 0.00 0.00 0.00 3.02
440 441 6.201615 TGTGCTTCATTAATCGCTATCTTCAG 59.798 38.462 0.00 0.00 0.00 3.02
441 442 5.698089 TGCTTCATTAATCGCTATCTTCAGG 59.302 40.000 0.00 0.00 0.00 3.86
442 443 5.928839 GCTTCATTAATCGCTATCTTCAGGA 59.071 40.000 0.00 0.00 0.00 3.86
443 444 6.128688 GCTTCATTAATCGCTATCTTCAGGAC 60.129 42.308 0.00 0.00 0.00 3.85
444 445 6.656632 TCATTAATCGCTATCTTCAGGACT 57.343 37.500 0.00 0.00 0.00 3.85
445 446 7.055667 TCATTAATCGCTATCTTCAGGACTT 57.944 36.000 0.00 0.00 0.00 3.01
446 447 6.925718 TCATTAATCGCTATCTTCAGGACTTG 59.074 38.462 0.00 0.00 0.00 3.16
447 448 3.742433 ATCGCTATCTTCAGGACTTGG 57.258 47.619 0.00 0.00 0.00 3.61
448 449 2.735151 TCGCTATCTTCAGGACTTGGA 58.265 47.619 0.00 0.00 0.00 3.53
449 450 2.690497 TCGCTATCTTCAGGACTTGGAG 59.310 50.000 0.00 0.00 33.24 3.86
450 451 2.690497 CGCTATCTTCAGGACTTGGAGA 59.310 50.000 0.00 0.00 45.55 3.71
457 458 6.627087 TCTTCAGGACTTGGAGATTATTGT 57.373 37.500 0.00 0.00 36.46 2.71
458 459 7.020827 TCTTCAGGACTTGGAGATTATTGTT 57.979 36.000 0.00 0.00 36.46 2.83
459 460 6.881065 TCTTCAGGACTTGGAGATTATTGTTG 59.119 38.462 0.00 0.00 36.46 3.33
460 461 6.126863 TCAGGACTTGGAGATTATTGTTGT 57.873 37.500 0.00 0.00 0.00 3.32
461 462 7.252612 TCAGGACTTGGAGATTATTGTTGTA 57.747 36.000 0.00 0.00 0.00 2.41
462 463 7.103641 TCAGGACTTGGAGATTATTGTTGTAC 58.896 38.462 0.00 0.00 0.00 2.90
463 464 6.036083 CAGGACTTGGAGATTATTGTTGTACG 59.964 42.308 0.00 0.00 0.00 3.67
464 465 5.873164 GGACTTGGAGATTATTGTTGTACGT 59.127 40.000 0.00 0.00 0.00 3.57
465 466 6.183360 GGACTTGGAGATTATTGTTGTACGTG 60.183 42.308 0.00 0.00 0.00 4.49
466 467 5.121768 ACTTGGAGATTATTGTTGTACGTGC 59.878 40.000 0.00 0.00 0.00 5.34
467 468 4.570930 TGGAGATTATTGTTGTACGTGCA 58.429 39.130 0.82 0.82 0.00 4.57
468 469 5.182487 TGGAGATTATTGTTGTACGTGCAT 58.818 37.500 7.30 0.00 0.00 3.96
469 470 5.293324 TGGAGATTATTGTTGTACGTGCATC 59.707 40.000 7.30 7.51 0.00 3.91
470 471 5.293324 GGAGATTATTGTTGTACGTGCATCA 59.707 40.000 12.58 12.58 0.00 3.07
471 472 6.106877 AGATTATTGTTGTACGTGCATCAC 57.893 37.500 15.67 8.94 0.00 3.06
487 488 4.475763 CATCACGTGCTACTACTAGAGG 57.524 50.000 11.67 0.00 0.00 3.69
488 489 3.623906 TCACGTGCTACTACTAGAGGT 57.376 47.619 11.67 0.00 0.00 3.85
489 490 3.529533 TCACGTGCTACTACTAGAGGTC 58.470 50.000 11.67 0.00 0.00 3.85
490 491 2.613133 CACGTGCTACTACTAGAGGTCC 59.387 54.545 0.82 0.00 0.00 4.46
491 492 1.865970 CGTGCTACTACTAGAGGTCCG 59.134 57.143 0.00 0.00 0.00 4.79
492 493 2.220313 GTGCTACTACTAGAGGTCCGG 58.780 57.143 0.00 0.00 0.00 5.14
493 494 1.237533 GCTACTACTAGAGGTCCGGC 58.762 60.000 0.00 0.00 0.00 6.13
494 495 1.202794 GCTACTACTAGAGGTCCGGCT 60.203 57.143 0.00 0.00 0.00 5.52
495 496 2.769893 CTACTACTAGAGGTCCGGCTC 58.230 57.143 0.00 0.00 0.00 4.70
496 497 0.183252 ACTACTAGAGGTCCGGCTCC 59.817 60.000 0.00 1.20 0.00 4.70
497 498 0.475044 CTACTAGAGGTCCGGCTCCT 59.525 60.000 16.05 16.05 38.09 3.69
501 502 2.124403 GAGGTCCGGCTCCTCGTA 60.124 66.667 22.96 0.00 41.36 3.43
502 503 1.751927 GAGGTCCGGCTCCTCGTAA 60.752 63.158 22.96 0.00 41.36 3.18
503 504 1.304713 AGGTCCGGCTCCTCGTAAA 60.305 57.895 11.41 0.00 0.00 2.01
504 505 0.901580 AGGTCCGGCTCCTCGTAAAA 60.902 55.000 11.41 0.00 0.00 1.52
505 506 0.037046 GGTCCGGCTCCTCGTAAAAA 60.037 55.000 0.00 0.00 0.00 1.94
506 507 1.356938 GTCCGGCTCCTCGTAAAAAG 58.643 55.000 0.00 0.00 0.00 2.27
507 508 1.067354 GTCCGGCTCCTCGTAAAAAGA 60.067 52.381 0.00 0.00 0.00 2.52
508 509 1.067354 TCCGGCTCCTCGTAAAAAGAC 60.067 52.381 0.00 0.00 0.00 3.01
509 510 1.356938 CGGCTCCTCGTAAAAAGACC 58.643 55.000 0.00 0.00 0.00 3.85
510 511 1.067071 CGGCTCCTCGTAAAAAGACCT 60.067 52.381 0.00 0.00 0.00 3.85
511 512 2.619147 GGCTCCTCGTAAAAAGACCTC 58.381 52.381 0.00 0.00 0.00 3.85
512 513 2.260481 GCTCCTCGTAAAAAGACCTCG 58.740 52.381 0.00 0.00 0.00 4.63
513 514 2.877335 CTCCTCGTAAAAAGACCTCGG 58.123 52.381 0.00 0.00 0.00 4.63
514 515 1.067354 TCCTCGTAAAAAGACCTCGGC 60.067 52.381 0.00 0.00 0.00 5.54
515 516 1.067071 CCTCGTAAAAAGACCTCGGCT 60.067 52.381 0.00 0.00 0.00 5.52
516 517 1.993370 CTCGTAAAAAGACCTCGGCTG 59.007 52.381 0.00 0.00 0.00 4.85
517 518 1.342174 TCGTAAAAAGACCTCGGCTGT 59.658 47.619 0.00 0.00 0.00 4.40
518 519 1.725164 CGTAAAAAGACCTCGGCTGTC 59.275 52.381 0.00 0.00 0.00 3.51
519 520 2.762745 GTAAAAAGACCTCGGCTGTCA 58.237 47.619 0.00 0.00 35.15 3.58
520 521 1.884235 AAAAAGACCTCGGCTGTCAG 58.116 50.000 0.00 0.00 35.15 3.51
521 522 0.603975 AAAAGACCTCGGCTGTCAGC 60.604 55.000 16.93 16.93 41.46 4.26
522 523 2.771763 AAAGACCTCGGCTGTCAGCG 62.772 60.000 18.44 13.48 43.62 5.18
523 524 4.803426 GACCTCGGCTGTCAGCGG 62.803 72.222 22.78 22.78 43.62 5.52
545 546 4.336889 CGGAGCCAGGAATTAAGTATCA 57.663 45.455 0.00 0.00 0.00 2.15
546 547 4.703897 CGGAGCCAGGAATTAAGTATCAA 58.296 43.478 0.00 0.00 0.00 2.57
547 548 5.123227 CGGAGCCAGGAATTAAGTATCAAA 58.877 41.667 0.00 0.00 0.00 2.69
548 549 5.237344 CGGAGCCAGGAATTAAGTATCAAAG 59.763 44.000 0.00 0.00 0.00 2.77
549 550 5.532779 GGAGCCAGGAATTAAGTATCAAAGG 59.467 44.000 0.00 0.00 0.00 3.11
550 551 5.449553 AGCCAGGAATTAAGTATCAAAGGG 58.550 41.667 0.00 0.00 0.00 3.95
551 552 4.584743 GCCAGGAATTAAGTATCAAAGGGG 59.415 45.833 0.00 0.00 0.00 4.79
552 553 4.584743 CCAGGAATTAAGTATCAAAGGGGC 59.415 45.833 0.00 0.00 0.00 5.80
553 554 4.584743 CAGGAATTAAGTATCAAAGGGGCC 59.415 45.833 0.00 0.00 0.00 5.80
554 555 4.231890 AGGAATTAAGTATCAAAGGGGCCA 59.768 41.667 4.39 0.00 0.00 5.36
555 556 4.959839 GGAATTAAGTATCAAAGGGGCCAA 59.040 41.667 4.39 0.00 0.00 4.52
556 557 5.423931 GGAATTAAGTATCAAAGGGGCCAAA 59.576 40.000 4.39 0.00 0.00 3.28
557 558 6.070481 GGAATTAAGTATCAAAGGGGCCAAAA 60.070 38.462 4.39 0.00 0.00 2.44
558 559 5.993748 TTAAGTATCAAAGGGGCCAAAAG 57.006 39.130 4.39 0.00 0.00 2.27
559 560 3.825908 AGTATCAAAGGGGCCAAAAGA 57.174 42.857 4.39 0.00 0.00 2.52
560 561 3.431415 AGTATCAAAGGGGCCAAAAGAC 58.569 45.455 4.39 0.00 0.00 3.01
561 562 2.702270 ATCAAAGGGGCCAAAAGACT 57.298 45.000 4.39 0.00 0.00 3.24
562 563 1.995376 TCAAAGGGGCCAAAAGACTC 58.005 50.000 4.39 0.00 0.00 3.36
563 564 1.216678 TCAAAGGGGCCAAAAGACTCA 59.783 47.619 4.39 0.00 0.00 3.41
564 565 2.038659 CAAAGGGGCCAAAAGACTCAA 58.961 47.619 4.39 0.00 0.00 3.02
565 566 2.433970 CAAAGGGGCCAAAAGACTCAAA 59.566 45.455 4.39 0.00 0.00 2.69
566 567 1.704641 AGGGGCCAAAAGACTCAAAC 58.295 50.000 4.39 0.00 0.00 2.93
567 568 1.217942 AGGGGCCAAAAGACTCAAACT 59.782 47.619 4.39 0.00 0.00 2.66
568 569 2.039418 GGGGCCAAAAGACTCAAACTT 58.961 47.619 4.39 0.00 0.00 2.66
569 570 2.434336 GGGGCCAAAAGACTCAAACTTT 59.566 45.455 4.39 0.00 38.91 2.66
570 571 3.118408 GGGGCCAAAAGACTCAAACTTTT 60.118 43.478 4.39 0.00 44.77 2.27
579 580 7.562454 AAAGACTCAAACTTTTGATAACGGA 57.438 32.000 4.89 0.00 45.26 4.69
580 581 6.787085 AGACTCAAACTTTTGATAACGGAG 57.213 37.500 4.89 0.00 45.26 4.63
581 582 5.701290 AGACTCAAACTTTTGATAACGGAGG 59.299 40.000 4.89 0.00 45.26 4.30
582 583 4.760204 ACTCAAACTTTTGATAACGGAGGG 59.240 41.667 4.89 0.00 45.26 4.30
583 584 3.504520 TCAAACTTTTGATAACGGAGGGC 59.495 43.478 0.07 0.00 41.88 5.19
584 585 2.871096 ACTTTTGATAACGGAGGGCA 57.129 45.000 0.00 0.00 0.00 5.36
585 586 3.149005 ACTTTTGATAACGGAGGGCAA 57.851 42.857 0.00 0.00 0.00 4.52
586 587 3.492337 ACTTTTGATAACGGAGGGCAAA 58.508 40.909 0.00 0.00 0.00 3.68
587 588 3.254903 ACTTTTGATAACGGAGGGCAAAC 59.745 43.478 0.00 0.00 0.00 2.93
588 589 2.570415 TTGATAACGGAGGGCAAACA 57.430 45.000 0.00 0.00 0.00 2.83
589 590 2.570415 TGATAACGGAGGGCAAACAA 57.430 45.000 0.00 0.00 0.00 2.83
590 591 3.080300 TGATAACGGAGGGCAAACAAT 57.920 42.857 0.00 0.00 0.00 2.71
591 592 4.223556 TGATAACGGAGGGCAAACAATA 57.776 40.909 0.00 0.00 0.00 1.90
592 593 4.196193 TGATAACGGAGGGCAAACAATAG 58.804 43.478 0.00 0.00 0.00 1.73
593 594 2.579410 AACGGAGGGCAAACAATAGT 57.421 45.000 0.00 0.00 0.00 2.12
594 595 3.706600 AACGGAGGGCAAACAATAGTA 57.293 42.857 0.00 0.00 0.00 1.82
595 596 3.706600 ACGGAGGGCAAACAATAGTAA 57.293 42.857 0.00 0.00 0.00 2.24
596 597 4.230745 ACGGAGGGCAAACAATAGTAAT 57.769 40.909 0.00 0.00 0.00 1.89
597 598 5.362105 ACGGAGGGCAAACAATAGTAATA 57.638 39.130 0.00 0.00 0.00 0.98
598 599 5.747342 ACGGAGGGCAAACAATAGTAATAA 58.253 37.500 0.00 0.00 0.00 1.40
599 600 6.181908 ACGGAGGGCAAACAATAGTAATAAA 58.818 36.000 0.00 0.00 0.00 1.40
600 601 6.831868 ACGGAGGGCAAACAATAGTAATAAAT 59.168 34.615 0.00 0.00 0.00 1.40
601 602 7.138736 CGGAGGGCAAACAATAGTAATAAATG 58.861 38.462 0.00 0.00 0.00 2.32
602 603 7.201785 CGGAGGGCAAACAATAGTAATAAATGT 60.202 37.037 0.00 0.00 0.00 2.71
603 604 9.127277 GGAGGGCAAACAATAGTAATAAATGTA 57.873 33.333 0.00 0.00 0.00 2.29
644 645 7.783090 ACATTGTTCATCATCTAACTAGCAG 57.217 36.000 0.00 0.00 0.00 4.24
645 646 6.259608 ACATTGTTCATCATCTAACTAGCAGC 59.740 38.462 0.00 0.00 0.00 5.25
646 647 5.343307 TGTTCATCATCTAACTAGCAGCA 57.657 39.130 0.00 0.00 0.00 4.41
647 648 5.733676 TGTTCATCATCTAACTAGCAGCAA 58.266 37.500 0.00 0.00 0.00 3.91
648 649 6.172630 TGTTCATCATCTAACTAGCAGCAAA 58.827 36.000 0.00 0.00 0.00 3.68
649 650 6.825213 TGTTCATCATCTAACTAGCAGCAAAT 59.175 34.615 0.00 0.00 0.00 2.32
650 651 7.011763 TGTTCATCATCTAACTAGCAGCAAATC 59.988 37.037 0.00 0.00 0.00 2.17
651 652 6.585416 TCATCATCTAACTAGCAGCAAATCA 58.415 36.000 0.00 0.00 0.00 2.57
652 653 6.481313 TCATCATCTAACTAGCAGCAAATCAC 59.519 38.462 0.00 0.00 0.00 3.06
653 654 5.982356 TCATCTAACTAGCAGCAAATCACT 58.018 37.500 0.00 0.00 0.00 3.41
654 655 5.814188 TCATCTAACTAGCAGCAAATCACTG 59.186 40.000 0.00 0.00 38.22 3.66
655 656 5.405935 TCTAACTAGCAGCAAATCACTGA 57.594 39.130 0.00 0.00 37.32 3.41
656 657 5.982356 TCTAACTAGCAGCAAATCACTGAT 58.018 37.500 0.00 0.00 37.32 2.90
657 658 6.045318 TCTAACTAGCAGCAAATCACTGATC 58.955 40.000 0.00 0.00 37.32 2.92
658 659 4.484537 ACTAGCAGCAAATCACTGATCT 57.515 40.909 0.00 0.00 37.32 2.75
659 660 4.841422 ACTAGCAGCAAATCACTGATCTT 58.159 39.130 0.00 0.00 37.32 2.40
660 661 5.251764 ACTAGCAGCAAATCACTGATCTTT 58.748 37.500 0.00 0.00 37.32 2.52
661 662 4.436242 AGCAGCAAATCACTGATCTTTG 57.564 40.909 0.00 0.00 37.32 2.77
665 666 3.767278 GCAAATCACTGATCTTTGCTCC 58.233 45.455 17.42 0.00 46.94 4.70
666 667 3.730061 GCAAATCACTGATCTTTGCTCCG 60.730 47.826 17.42 0.00 46.94 4.63
667 668 2.322355 ATCACTGATCTTTGCTCCGG 57.678 50.000 0.00 0.00 0.00 5.14
668 669 1.266178 TCACTGATCTTTGCTCCGGA 58.734 50.000 2.93 2.93 0.00 5.14
669 670 1.205655 TCACTGATCTTTGCTCCGGAG 59.794 52.381 27.83 27.83 0.00 4.63
683 684 3.927555 CGGAGGGTTCAGCTGTAAA 57.072 52.632 14.67 0.00 0.00 2.01
684 685 2.178912 CGGAGGGTTCAGCTGTAAAA 57.821 50.000 14.67 0.00 0.00 1.52
685 686 2.500229 CGGAGGGTTCAGCTGTAAAAA 58.500 47.619 14.67 0.00 0.00 1.94
686 687 3.081804 CGGAGGGTTCAGCTGTAAAAAT 58.918 45.455 14.67 0.00 0.00 1.82
687 688 3.119849 CGGAGGGTTCAGCTGTAAAAATG 60.120 47.826 14.67 0.00 0.00 2.32
688 689 4.079253 GGAGGGTTCAGCTGTAAAAATGA 58.921 43.478 14.67 0.00 0.00 2.57
689 690 4.522789 GGAGGGTTCAGCTGTAAAAATGAA 59.477 41.667 14.67 0.00 0.00 2.57
690 691 5.453567 AGGGTTCAGCTGTAAAAATGAAC 57.546 39.130 14.67 8.07 46.84 3.18
693 694 5.789774 GTTCAGCTGTAAAAATGAACGTG 57.210 39.130 14.67 0.00 41.31 4.49
694 695 4.481930 TCAGCTGTAAAAATGAACGTGG 57.518 40.909 14.67 0.00 0.00 4.94
695 696 4.130857 TCAGCTGTAAAAATGAACGTGGA 58.869 39.130 14.67 0.00 0.00 4.02
696 697 4.024387 TCAGCTGTAAAAATGAACGTGGAC 60.024 41.667 14.67 0.00 0.00 4.02
697 698 3.880490 AGCTGTAAAAATGAACGTGGACA 59.120 39.130 0.00 0.00 0.00 4.02
698 699 4.024048 AGCTGTAAAAATGAACGTGGACAG 60.024 41.667 0.00 0.00 36.88 3.51
699 700 4.783242 CTGTAAAAATGAACGTGGACAGG 58.217 43.478 0.00 0.00 31.52 4.00
700 701 3.566322 TGTAAAAATGAACGTGGACAGGG 59.434 43.478 0.00 0.00 0.00 4.45
787 800 1.401318 TTGCCATGCAGTGCCAACTT 61.401 50.000 13.72 0.00 40.61 2.66
948 972 1.302511 CGCACCAAGTAGCTGGGTT 60.303 57.895 0.00 0.00 35.20 4.11
1145 1182 3.993736 CCGACGATGGTATGCATTATCAA 59.006 43.478 3.54 0.00 0.00 2.57
1240 1296 5.308014 GTTTTCTGATTTGGGGATTTGCTT 58.692 37.500 0.00 0.00 0.00 3.91
1291 1348 3.944087 AGACTACAATGGCTTGGAGAAC 58.056 45.455 13.60 8.40 44.93 3.01
1452 1518 3.983044 AGTTGGTAGCCTCTGTTTAGG 57.017 47.619 0.00 0.00 39.87 2.69
1786 1965 3.601443 AGGTTGCAGTAGAAGTAGCAG 57.399 47.619 0.00 0.00 38.35 4.24
1801 1980 4.632153 AGTAGCAGTGTTTAGTTGACCAG 58.368 43.478 0.00 0.00 0.00 4.00
1804 1983 3.134804 AGCAGTGTTTAGTTGACCAGAGT 59.865 43.478 0.00 0.00 0.00 3.24
1805 1984 3.248602 GCAGTGTTTAGTTGACCAGAGTG 59.751 47.826 0.00 0.00 0.00 3.51
1806 1985 4.442706 CAGTGTTTAGTTGACCAGAGTGT 58.557 43.478 0.00 0.00 0.00 3.55
1807 1986 4.876107 CAGTGTTTAGTTGACCAGAGTGTT 59.124 41.667 0.00 0.00 0.00 3.32
1808 1987 5.354234 CAGTGTTTAGTTGACCAGAGTGTTT 59.646 40.000 0.00 0.00 0.00 2.83
1809 1988 6.537301 CAGTGTTTAGTTGACCAGAGTGTTTA 59.463 38.462 0.00 0.00 0.00 2.01
1810 1989 6.761714 AGTGTTTAGTTGACCAGAGTGTTTAG 59.238 38.462 0.00 0.00 0.00 1.85
1811 1990 6.537660 GTGTTTAGTTGACCAGAGTGTTTAGT 59.462 38.462 0.00 0.00 0.00 2.24
1812 1991 7.065443 GTGTTTAGTTGACCAGAGTGTTTAGTT 59.935 37.037 0.00 0.00 0.00 2.24
1813 1992 7.065324 TGTTTAGTTGACCAGAGTGTTTAGTTG 59.935 37.037 0.00 0.00 0.00 3.16
1814 1993 3.877508 AGTTGACCAGAGTGTTTAGTTGC 59.122 43.478 0.00 0.00 0.00 4.17
1815 1994 3.552132 TGACCAGAGTGTTTAGTTGCA 57.448 42.857 0.00 0.00 0.00 4.08
1816 1995 3.202906 TGACCAGAGTGTTTAGTTGCAC 58.797 45.455 0.00 0.00 35.98 4.57
1818 1997 4.100344 TGACCAGAGTGTTTAGTTGCACTA 59.900 41.667 0.00 0.00 44.89 2.74
1819 1998 4.632153 ACCAGAGTGTTTAGTTGCACTAG 58.368 43.478 0.00 0.00 44.89 2.57
1820 1999 4.344102 ACCAGAGTGTTTAGTTGCACTAGA 59.656 41.667 0.00 0.00 44.89 2.43
1821 2000 5.163343 ACCAGAGTGTTTAGTTGCACTAGAA 60.163 40.000 0.00 0.00 44.89 2.10
1822 2001 5.406780 CCAGAGTGTTTAGTTGCACTAGAAG 59.593 44.000 0.00 0.00 44.89 2.85
1823 2002 5.986135 CAGAGTGTTTAGTTGCACTAGAAGT 59.014 40.000 0.00 0.00 44.89 3.01
1824 2003 7.145985 CAGAGTGTTTAGTTGCACTAGAAGTA 58.854 38.462 0.00 0.00 44.89 2.24
1825 2004 7.327275 CAGAGTGTTTAGTTGCACTAGAAGTAG 59.673 40.741 0.00 0.00 44.89 2.57
1826 2005 5.927115 AGTGTTTAGTTGCACTAGAAGTAGC 59.073 40.000 0.00 0.00 43.30 3.58
1827 2006 5.694910 GTGTTTAGTTGCACTAGAAGTAGCA 59.305 40.000 0.00 0.00 31.47 3.49
1828 2007 5.926542 TGTTTAGTTGCACTAGAAGTAGCAG 59.073 40.000 0.00 0.00 35.11 4.24
1829 2008 5.723672 TTAGTTGCACTAGAAGTAGCAGT 57.276 39.130 0.00 0.00 35.11 4.40
1830 2009 3.919216 AGTTGCACTAGAAGTAGCAGTG 58.081 45.455 0.00 0.00 42.08 3.66
1831 2010 3.322254 AGTTGCACTAGAAGTAGCAGTGT 59.678 43.478 0.00 0.00 41.39 3.55
1832 2011 4.058817 GTTGCACTAGAAGTAGCAGTGTT 58.941 43.478 0.00 0.00 41.39 3.32
1833 2012 4.336889 TGCACTAGAAGTAGCAGTGTTT 57.663 40.909 0.00 0.00 41.39 2.83
1834 2013 5.462530 TGCACTAGAAGTAGCAGTGTTTA 57.537 39.130 0.00 0.00 41.39 2.01
1835 2014 5.470368 TGCACTAGAAGTAGCAGTGTTTAG 58.530 41.667 0.00 0.00 41.39 1.85
1836 2015 5.010719 TGCACTAGAAGTAGCAGTGTTTAGT 59.989 40.000 0.00 0.00 41.39 2.24
1837 2016 5.927115 GCACTAGAAGTAGCAGTGTTTAGTT 59.073 40.000 0.00 0.00 41.39 2.24
1838 2017 6.128795 GCACTAGAAGTAGCAGTGTTTAGTTG 60.129 42.308 0.00 0.00 41.39 3.16
1839 2018 7.145985 CACTAGAAGTAGCAGTGTTTAGTTGA 58.854 38.462 0.00 0.00 35.91 3.18
1840 2019 7.115095 CACTAGAAGTAGCAGTGTTTAGTTGAC 59.885 40.741 0.00 0.00 35.91 3.18
1841 2020 5.298347 AGAAGTAGCAGTGTTTAGTTGACC 58.702 41.667 0.00 0.00 0.00 4.02
1842 2021 4.682778 AGTAGCAGTGTTTAGTTGACCA 57.317 40.909 0.00 0.00 0.00 4.02
1843 2022 4.632153 AGTAGCAGTGTTTAGTTGACCAG 58.368 43.478 0.00 0.00 0.00 4.00
1844 2023 3.560636 AGCAGTGTTTAGTTGACCAGT 57.439 42.857 0.00 0.00 0.00 4.00
1845 2024 3.206150 AGCAGTGTTTAGTTGACCAGTG 58.794 45.455 0.00 0.00 0.00 3.66
1846 2025 2.943033 GCAGTGTTTAGTTGACCAGTGT 59.057 45.455 0.00 0.00 32.20 3.55
1847 2026 4.124238 GCAGTGTTTAGTTGACCAGTGTA 58.876 43.478 0.00 0.00 32.20 2.90
1848 2027 4.211374 GCAGTGTTTAGTTGACCAGTGTAG 59.789 45.833 0.00 0.00 32.20 2.74
1849 2028 5.597806 CAGTGTTTAGTTGACCAGTGTAGA 58.402 41.667 0.00 0.00 0.00 2.59
1850 2029 6.223852 CAGTGTTTAGTTGACCAGTGTAGAT 58.776 40.000 0.00 0.00 0.00 1.98
1851 2030 6.146184 CAGTGTTTAGTTGACCAGTGTAGATG 59.854 42.308 0.00 0.00 0.00 2.90
1852 2031 4.994852 TGTTTAGTTGACCAGTGTAGATGC 59.005 41.667 0.00 0.00 0.00 3.91
1853 2032 5.221641 TGTTTAGTTGACCAGTGTAGATGCT 60.222 40.000 0.00 0.00 0.00 3.79
1854 2033 6.014925 TGTTTAGTTGACCAGTGTAGATGCTA 60.015 38.462 0.00 0.00 0.00 3.49
1855 2034 6.599356 TTAGTTGACCAGTGTAGATGCTAA 57.401 37.500 0.00 0.00 0.00 3.09
1856 2035 5.683876 AGTTGACCAGTGTAGATGCTAAT 57.316 39.130 0.00 0.00 0.00 1.73
1857 2036 6.054860 AGTTGACCAGTGTAGATGCTAATT 57.945 37.500 0.00 0.00 0.00 1.40
1858 2037 6.476378 AGTTGACCAGTGTAGATGCTAATTT 58.524 36.000 0.00 0.00 0.00 1.82
1859 2038 6.942576 AGTTGACCAGTGTAGATGCTAATTTT 59.057 34.615 0.00 0.00 0.00 1.82
1860 2039 7.448469 AGTTGACCAGTGTAGATGCTAATTTTT 59.552 33.333 0.00 0.00 0.00 1.94
1861 2040 8.726988 GTTGACCAGTGTAGATGCTAATTTTTA 58.273 33.333 0.00 0.00 0.00 1.52
1862 2041 8.856153 TGACCAGTGTAGATGCTAATTTTTAA 57.144 30.769 0.00 0.00 0.00 1.52
1863 2042 9.461312 TGACCAGTGTAGATGCTAATTTTTAAT 57.539 29.630 0.00 0.00 0.00 1.40
1866 2045 9.520204 CCAGTGTAGATGCTAATTTTTAATTGG 57.480 33.333 0.00 0.00 0.00 3.16
1867 2046 9.520204 CAGTGTAGATGCTAATTTTTAATTGGG 57.480 33.333 0.00 0.00 0.00 4.12
1868 2047 8.695456 AGTGTAGATGCTAATTTTTAATTGGGG 58.305 33.333 0.00 0.00 0.00 4.96
1869 2048 8.474831 GTGTAGATGCTAATTTTTAATTGGGGT 58.525 33.333 0.00 0.00 0.00 4.95
1870 2049 9.702253 TGTAGATGCTAATTTTTAATTGGGGTA 57.298 29.630 0.00 0.00 0.00 3.69
1901 2080 9.726438 ATGTTGTAGTTCTTATGCTCTTAGTTT 57.274 29.630 0.00 0.00 0.00 2.66
2076 2259 4.947645 TGAAGCTTTGGGAAATGTTTGAG 58.052 39.130 0.00 0.00 0.00 3.02
2147 2330 4.891992 TCCACCACCTTAAAGAAGAGAG 57.108 45.455 0.00 0.00 34.25 3.20
2159 2342 5.574970 AAAGAAGAGAGAAGGAATGTGGT 57.425 39.130 0.00 0.00 0.00 4.16
2175 2358 2.621055 TGTGGTTGCCAACTATGACAAC 59.379 45.455 7.62 0.15 45.80 3.32
2461 2656 8.729805 TGAAGGCAACAACAATTTAAAGATTT 57.270 26.923 0.00 0.00 41.41 2.17
2569 2765 5.452302 GGACATGAGAATTTGATAAAACGCG 59.548 40.000 3.53 3.53 0.00 6.01
2743 2939 6.670695 ATGTTGGTTTGATAGAAGGCTTTT 57.329 33.333 0.00 0.00 0.00 2.27
2837 3055 7.394359 ACAATGTTGAACTCCACTATGCTAATT 59.606 33.333 0.00 0.00 0.00 1.40
2838 3056 8.892723 CAATGTTGAACTCCACTATGCTAATTA 58.107 33.333 0.00 0.00 0.00 1.40
2839 3057 9.461312 AATGTTGAACTCCACTATGCTAATTAA 57.539 29.630 0.00 0.00 0.00 1.40
2840 3058 9.632638 ATGTTGAACTCCACTATGCTAATTAAT 57.367 29.630 0.00 0.00 0.00 1.40
3032 3305 3.158676 CCCGGTCCAAATCAAACCTTAA 58.841 45.455 0.00 0.00 0.00 1.85
3082 3377 6.832520 TTAGATTGCTTTGATGGCTGTTAA 57.167 33.333 0.00 0.00 0.00 2.01
3099 3394 3.566322 TGTTAAATGGCGCAAGTTAGTGT 59.434 39.130 10.83 0.00 41.68 3.55
3106 3401 2.034076 GCGCAAGTTAGTGTCGTTTTG 58.966 47.619 0.30 0.00 41.68 2.44
3109 3404 2.857104 GCAAGTTAGTGTCGTTTTGGCC 60.857 50.000 0.00 0.00 0.00 5.36
3110 3405 2.335316 AGTTAGTGTCGTTTTGGCCA 57.665 45.000 0.00 0.00 0.00 5.36
3111 3406 1.944709 AGTTAGTGTCGTTTTGGCCAC 59.055 47.619 3.88 0.00 0.00 5.01
3112 3407 1.671845 GTTAGTGTCGTTTTGGCCACA 59.328 47.619 3.88 0.00 0.00 4.17
3115 3411 0.524604 GTGTCGTTTTGGCCACACAC 60.525 55.000 3.88 10.07 39.21 3.82
3151 3468 2.360350 CCGTCAATGTGCTGGCCT 60.360 61.111 3.32 0.00 0.00 5.19
3190 3525 2.114411 GGGGCGAACAGGGAACAA 59.886 61.111 0.00 0.00 0.00 2.83
3196 3531 1.904287 CGAACAGGGAACAATTGGGA 58.096 50.000 10.83 0.00 0.00 4.37
3197 3532 2.446435 CGAACAGGGAACAATTGGGAT 58.554 47.619 10.83 0.00 0.00 3.85
3198 3533 2.825532 CGAACAGGGAACAATTGGGATT 59.174 45.455 10.83 0.00 0.00 3.01
3200 3535 4.568956 GAACAGGGAACAATTGGGATTTG 58.431 43.478 10.83 5.32 0.00 2.32
3201 3536 2.905736 ACAGGGAACAATTGGGATTTGG 59.094 45.455 10.83 0.00 0.00 3.28
3203 3538 2.113414 AGGGAACAATTGGGATTTGGGA 59.887 45.455 10.83 0.00 0.00 4.37
3204 3539 2.909662 GGGAACAATTGGGATTTGGGAA 59.090 45.455 10.83 0.00 0.00 3.97
3205 3540 3.329225 GGGAACAATTGGGATTTGGGAAA 59.671 43.478 10.83 0.00 0.00 3.13
3226 3564 4.247781 CCTAGGGTTAGGCGACGA 57.752 61.111 0.00 0.00 40.10 4.20
3306 3659 2.352388 GGCTGCGTACAAGGAAATGTA 58.648 47.619 0.00 0.00 34.75 2.29
3310 3663 2.739913 TGCGTACAAGGAAATGTAGTGC 59.260 45.455 0.00 0.00 36.51 4.40
3321 3674 1.853963 ATGTAGTGCTCTTCGGGTCT 58.146 50.000 0.00 0.00 0.00 3.85
3354 3708 2.701780 GCTTCCGTCGAGCCTCTGA 61.702 63.158 0.00 0.00 34.06 3.27
3399 3753 3.630289 GGTGCCCTACCGTGAGAT 58.370 61.111 0.00 0.00 40.26 2.75
3791 4174 1.754226 GTGGTGGCTTTGGAAGAACAA 59.246 47.619 0.00 0.00 0.00 2.83
3830 4213 4.442612 GCAGAGATAGATGCAGTGAAGGAA 60.443 45.833 0.00 0.00 42.11 3.36
3831 4214 5.668471 CAGAGATAGATGCAGTGAAGGAAA 58.332 41.667 0.00 0.00 0.00 3.13
3832 4215 6.111382 CAGAGATAGATGCAGTGAAGGAAAA 58.889 40.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.958234 TCGTGAATTCAGAATAAATTTCACAAA 57.042 25.926 19.56 9.40 31.26 2.83
36 37 9.958234 TTCGTGAATTCAGAATAAATTTCACAA 57.042 25.926 19.56 12.92 31.26 3.33
37 38 9.393249 GTTCGTGAATTCAGAATAAATTTCACA 57.607 29.630 19.56 9.34 31.26 3.58
38 39 8.567221 CGTTCGTGAATTCAGAATAAATTTCAC 58.433 33.333 8.80 13.37 0.00 3.18
39 40 8.286800 ACGTTCGTGAATTCAGAATAAATTTCA 58.713 29.630 8.80 0.00 0.00 2.69
40 41 8.655378 ACGTTCGTGAATTCAGAATAAATTTC 57.345 30.769 8.80 1.50 0.00 2.17
43 44 9.916397 GATAACGTTCGTGAATTCAGAATAAAT 57.084 29.630 8.80 7.56 0.00 1.40
44 45 8.105742 CGATAACGTTCGTGAATTCAGAATAAA 58.894 33.333 8.80 0.00 34.46 1.40
45 46 7.485595 TCGATAACGTTCGTGAATTCAGAATAA 59.514 33.333 8.80 0.00 40.03 1.40
46 47 6.968335 TCGATAACGTTCGTGAATTCAGAATA 59.032 34.615 8.80 5.44 40.03 1.75
47 48 5.803461 TCGATAACGTTCGTGAATTCAGAAT 59.197 36.000 8.80 3.58 40.03 2.40
48 49 5.060077 GTCGATAACGTTCGTGAATTCAGAA 59.940 40.000 8.80 11.60 40.03 3.02
49 50 4.556135 GTCGATAACGTTCGTGAATTCAGA 59.444 41.667 8.80 5.97 40.03 3.27
50 51 4.543844 CGTCGATAACGTTCGTGAATTCAG 60.544 45.833 8.80 3.55 46.42 3.02
51 52 3.298760 CGTCGATAACGTTCGTGAATTCA 59.701 43.478 2.82 3.38 46.42 2.57
52 53 3.819696 CGTCGATAACGTTCGTGAATTC 58.180 45.455 2.82 0.00 46.42 2.17
53 54 3.876210 CGTCGATAACGTTCGTGAATT 57.124 42.857 2.82 0.00 46.42 2.17
105 106 9.176460 ACTTTGAATCCAAAAATGTTCACAAAT 57.824 25.926 0.00 0.00 41.28 2.32
106 107 8.558973 ACTTTGAATCCAAAAATGTTCACAAA 57.441 26.923 0.00 0.00 41.28 2.83
107 108 7.821359 TGACTTTGAATCCAAAAATGTTCACAA 59.179 29.630 0.00 0.00 41.28 3.33
108 109 7.277539 GTGACTTTGAATCCAAAAATGTTCACA 59.722 33.333 0.00 0.00 41.28 3.58
109 110 7.277539 TGTGACTTTGAATCCAAAAATGTTCAC 59.722 33.333 0.00 0.00 41.28 3.18
110 111 7.326454 TGTGACTTTGAATCCAAAAATGTTCA 58.674 30.769 0.00 0.00 41.28 3.18
111 112 7.769272 TGTGACTTTGAATCCAAAAATGTTC 57.231 32.000 0.00 0.00 41.28 3.18
112 113 7.065683 GGTTGTGACTTTGAATCCAAAAATGTT 59.934 33.333 0.00 0.00 41.28 2.71
113 114 6.538381 GGTTGTGACTTTGAATCCAAAAATGT 59.462 34.615 0.00 0.00 41.28 2.71
114 115 6.762661 AGGTTGTGACTTTGAATCCAAAAATG 59.237 34.615 0.00 0.00 41.28 2.32
115 116 6.888105 AGGTTGTGACTTTGAATCCAAAAAT 58.112 32.000 0.00 0.00 41.28 1.82
116 117 6.293004 AGGTTGTGACTTTGAATCCAAAAA 57.707 33.333 0.00 0.00 41.28 1.94
117 118 5.930837 AGGTTGTGACTTTGAATCCAAAA 57.069 34.783 0.00 0.00 41.28 2.44
118 119 5.930837 AAGGTTGTGACTTTGAATCCAAA 57.069 34.783 0.00 0.00 39.74 3.28
119 120 5.930837 AAAGGTTGTGACTTTGAATCCAA 57.069 34.783 0.00 0.00 36.83 3.53
120 121 5.420421 TCAAAAGGTTGTGACTTTGAATCCA 59.580 36.000 0.00 0.00 38.13 3.41
121 122 5.901552 TCAAAAGGTTGTGACTTTGAATCC 58.098 37.500 0.00 0.00 38.13 3.01
122 123 8.424274 AATTCAAAAGGTTGTGACTTTGAATC 57.576 30.769 17.25 0.00 38.13 2.52
123 124 8.667463 CAAATTCAAAAGGTTGTGACTTTGAAT 58.333 29.630 15.63 13.42 42.48 2.57
124 125 7.659390 ACAAATTCAAAAGGTTGTGACTTTGAA 59.341 29.630 22.77 10.67 42.48 2.69
125 126 7.158021 ACAAATTCAAAAGGTTGTGACTTTGA 58.842 30.769 22.77 4.49 42.48 2.69
126 127 7.363205 ACAAATTCAAAAGGTTGTGACTTTG 57.637 32.000 17.71 17.71 44.04 2.77
133 134 8.791327 AAATCTTCACAAATTCAAAAGGTTGT 57.209 26.923 0.00 0.00 36.07 3.32
240 241 8.928270 TTTGTAAATTTTAACAATGTCCGTGT 57.072 26.923 7.23 0.00 35.64 4.49
294 295 8.668353 GCTCTCAATACACATCTACATTCAAAA 58.332 33.333 0.00 0.00 0.00 2.44
295 296 7.823799 TGCTCTCAATACACATCTACATTCAAA 59.176 33.333 0.00 0.00 0.00 2.69
296 297 7.330262 TGCTCTCAATACACATCTACATTCAA 58.670 34.615 0.00 0.00 0.00 2.69
297 298 6.877236 TGCTCTCAATACACATCTACATTCA 58.123 36.000 0.00 0.00 0.00 2.57
298 299 7.959689 ATGCTCTCAATACACATCTACATTC 57.040 36.000 0.00 0.00 0.00 2.67
299 300 7.596621 CGTATGCTCTCAATACACATCTACATT 59.403 37.037 0.00 0.00 0.00 2.71
300 301 7.087007 CGTATGCTCTCAATACACATCTACAT 58.913 38.462 0.00 0.00 0.00 2.29
301 302 6.039382 ACGTATGCTCTCAATACACATCTACA 59.961 38.462 0.00 0.00 0.00 2.74
302 303 6.439599 ACGTATGCTCTCAATACACATCTAC 58.560 40.000 0.00 0.00 0.00 2.59
303 304 6.486993 AGACGTATGCTCTCAATACACATCTA 59.513 38.462 0.00 0.00 0.00 1.98
304 305 5.300539 AGACGTATGCTCTCAATACACATCT 59.699 40.000 0.00 0.00 0.00 2.90
305 306 5.524284 AGACGTATGCTCTCAATACACATC 58.476 41.667 0.00 0.00 0.00 3.06
306 307 5.521906 AGACGTATGCTCTCAATACACAT 57.478 39.130 0.00 0.00 0.00 3.21
307 308 4.495844 CGAGACGTATGCTCTCAATACACA 60.496 45.833 12.20 0.00 34.85 3.72
308 309 3.969352 CGAGACGTATGCTCTCAATACAC 59.031 47.826 12.20 0.00 34.85 2.90
309 310 3.626217 ACGAGACGTATGCTCTCAATACA 59.374 43.478 12.20 0.00 38.73 2.29
310 311 3.969352 CACGAGACGTATGCTCTCAATAC 59.031 47.826 12.20 0.00 38.32 1.89
311 312 3.626217 ACACGAGACGTATGCTCTCAATA 59.374 43.478 12.20 0.00 38.32 1.90
312 313 2.423892 ACACGAGACGTATGCTCTCAAT 59.576 45.455 12.20 1.49 38.32 2.57
313 314 1.810755 ACACGAGACGTATGCTCTCAA 59.189 47.619 12.20 0.00 38.32 3.02
314 315 1.450025 ACACGAGACGTATGCTCTCA 58.550 50.000 12.20 0.00 38.32 3.27
315 316 3.247886 TCATACACGAGACGTATGCTCTC 59.752 47.826 5.61 0.00 43.84 3.20
316 317 3.203716 TCATACACGAGACGTATGCTCT 58.796 45.455 5.61 0.00 43.84 4.09
317 318 3.604065 TCATACACGAGACGTATGCTC 57.396 47.619 5.61 0.00 43.84 4.26
318 319 4.569761 AATCATACACGAGACGTATGCT 57.430 40.909 5.61 0.00 43.84 3.79
319 320 6.417044 ACTTAAATCATACACGAGACGTATGC 59.583 38.462 5.61 0.00 43.84 3.14
320 321 7.431376 ACACTTAAATCATACACGAGACGTATG 59.569 37.037 4.32 4.32 44.97 2.39
321 322 7.478322 ACACTTAAATCATACACGAGACGTAT 58.522 34.615 0.00 0.00 38.32 3.06
322 323 6.845302 ACACTTAAATCATACACGAGACGTA 58.155 36.000 0.00 0.00 38.32 3.57
323 324 5.706916 ACACTTAAATCATACACGAGACGT 58.293 37.500 0.00 0.00 42.36 4.34
324 325 7.730067 TTACACTTAAATCATACACGAGACG 57.270 36.000 0.00 0.00 0.00 4.18
325 326 9.297586 TGATTACACTTAAATCATACACGAGAC 57.702 33.333 0.00 0.00 38.19 3.36
350 351 0.469331 ATGGCAGCTCCCATGGAATG 60.469 55.000 8.87 7.19 43.80 2.67
351 352 1.935973 ATGGCAGCTCCCATGGAAT 59.064 52.632 8.87 0.00 43.80 3.01
352 353 3.430471 ATGGCAGCTCCCATGGAA 58.570 55.556 8.87 0.00 43.80 3.53
356 357 1.142936 TACATCATGGCAGCTCCCAT 58.857 50.000 2.27 2.27 46.35 4.00
357 358 0.181114 GTACATCATGGCAGCTCCCA 59.819 55.000 0.00 0.00 39.65 4.37
358 359 0.536006 GGTACATCATGGCAGCTCCC 60.536 60.000 0.00 0.00 0.00 4.30
359 360 0.181114 TGGTACATCATGGCAGCTCC 59.819 55.000 0.00 0.00 0.00 4.70
360 361 1.139654 TCTGGTACATCATGGCAGCTC 59.860 52.381 0.00 0.00 38.20 4.09
361 362 1.134280 GTCTGGTACATCATGGCAGCT 60.134 52.381 0.00 0.00 38.20 4.24
362 363 1.303309 GTCTGGTACATCATGGCAGC 58.697 55.000 0.00 0.00 38.20 5.25
363 364 1.134699 ACGTCTGGTACATCATGGCAG 60.135 52.381 0.00 0.00 38.20 4.85
364 365 0.901827 ACGTCTGGTACATCATGGCA 59.098 50.000 0.00 0.00 38.20 4.92
365 366 2.743938 CTACGTCTGGTACATCATGGC 58.256 52.381 0.00 0.00 38.20 4.40
366 367 2.100749 TGCTACGTCTGGTACATCATGG 59.899 50.000 0.00 0.00 38.20 3.66
367 368 3.436700 TGCTACGTCTGGTACATCATG 57.563 47.619 0.00 0.00 38.20 3.07
368 369 3.304726 CGATGCTACGTCTGGTACATCAT 60.305 47.826 0.00 0.00 38.34 2.45
369 370 2.032924 CGATGCTACGTCTGGTACATCA 59.967 50.000 0.00 0.00 38.34 3.07
370 371 2.289820 TCGATGCTACGTCTGGTACATC 59.710 50.000 0.00 0.00 36.88 3.06
371 372 2.294979 TCGATGCTACGTCTGGTACAT 58.705 47.619 0.00 0.00 33.98 2.29
372 373 1.741528 TCGATGCTACGTCTGGTACA 58.258 50.000 0.00 0.00 34.70 2.90
373 374 3.351020 AATCGATGCTACGTCTGGTAC 57.649 47.619 0.00 0.00 34.70 3.34
374 375 3.059393 CGTAATCGATGCTACGTCTGGTA 60.059 47.826 17.52 0.00 39.71 3.25
375 376 2.286831 CGTAATCGATGCTACGTCTGGT 60.287 50.000 17.52 0.00 39.71 4.00
376 377 2.307929 CGTAATCGATGCTACGTCTGG 58.692 52.381 17.52 0.00 39.71 3.86
381 382 3.177838 CACTTGACGTAATCGATGCTACG 59.822 47.826 21.99 21.99 44.97 3.51
382 383 4.348656 TCACTTGACGTAATCGATGCTAC 58.651 43.478 0.00 0.00 40.62 3.58
383 384 4.625972 TCACTTGACGTAATCGATGCTA 57.374 40.909 0.00 0.00 40.62 3.49
384 385 3.503827 TCACTTGACGTAATCGATGCT 57.496 42.857 0.00 0.00 40.62 3.79
385 386 3.612860 ACTTCACTTGACGTAATCGATGC 59.387 43.478 0.00 0.00 40.62 3.91
386 387 6.028368 AGTACTTCACTTGACGTAATCGATG 58.972 40.000 0.00 0.00 35.66 3.84
387 388 6.192234 AGTACTTCACTTGACGTAATCGAT 57.808 37.500 0.00 0.00 35.66 3.59
388 389 5.618056 AGTACTTCACTTGACGTAATCGA 57.382 39.130 0.00 0.00 35.66 3.59
389 390 5.447214 CGTAGTACTTCACTTGACGTAATCG 59.553 44.000 0.00 1.78 38.80 3.34
390 391 6.537566 TCGTAGTACTTCACTTGACGTAATC 58.462 40.000 0.00 0.00 39.31 1.75
391 392 6.486253 TCGTAGTACTTCACTTGACGTAAT 57.514 37.500 0.00 2.10 39.31 1.89
392 393 5.922739 TCGTAGTACTTCACTTGACGTAA 57.077 39.130 0.00 0.00 39.31 3.18
393 394 5.409520 ACATCGTAGTACTTCACTTGACGTA 59.590 40.000 0.00 0.00 39.31 3.57
394 395 4.214971 ACATCGTAGTACTTCACTTGACGT 59.785 41.667 0.00 0.00 39.31 4.34
395 396 4.553815 CACATCGTAGTACTTCACTTGACG 59.446 45.833 0.00 2.93 39.53 4.35
396 397 4.323868 GCACATCGTAGTACTTCACTTGAC 59.676 45.833 0.00 0.00 38.80 3.18
397 398 4.217767 AGCACATCGTAGTACTTCACTTGA 59.782 41.667 0.00 0.00 38.80 3.02
398 399 4.486090 AGCACATCGTAGTACTTCACTTG 58.514 43.478 0.00 0.00 38.80 3.16
399 400 4.785511 AGCACATCGTAGTACTTCACTT 57.214 40.909 0.00 0.00 38.80 3.16
400 401 4.217767 TGAAGCACATCGTAGTACTTCACT 59.782 41.667 16.29 0.00 43.43 3.41
401 402 4.482386 TGAAGCACATCGTAGTACTTCAC 58.518 43.478 16.29 0.00 43.43 3.18
402 403 4.776795 TGAAGCACATCGTAGTACTTCA 57.223 40.909 16.29 16.29 45.09 3.02
403 404 7.751047 TTAATGAAGCACATCGTAGTACTTC 57.249 36.000 0.00 12.79 40.63 3.01
404 405 7.167635 CGATTAATGAAGCACATCGTAGTACTT 59.832 37.037 0.00 0.00 38.38 2.24
405 406 6.637254 CGATTAATGAAGCACATCGTAGTACT 59.363 38.462 0.00 0.00 38.38 2.73
406 407 6.613745 GCGATTAATGAAGCACATCGTAGTAC 60.614 42.308 0.00 0.00 38.38 2.73
407 408 5.401376 GCGATTAATGAAGCACATCGTAGTA 59.599 40.000 0.00 0.00 38.38 1.82
408 409 4.209288 GCGATTAATGAAGCACATCGTAGT 59.791 41.667 0.00 0.00 38.38 2.73
409 410 4.445718 AGCGATTAATGAAGCACATCGTAG 59.554 41.667 0.00 0.00 38.38 3.51
410 411 4.368315 AGCGATTAATGAAGCACATCGTA 58.632 39.130 0.00 0.00 38.38 3.43
411 412 3.198068 AGCGATTAATGAAGCACATCGT 58.802 40.909 0.00 0.00 38.38 3.73
412 413 3.867055 AGCGATTAATGAAGCACATCG 57.133 42.857 0.00 0.00 38.38 3.84
413 414 6.718454 AGATAGCGATTAATGAAGCACATC 57.282 37.500 0.00 3.81 38.38 3.06
414 415 6.707608 TGAAGATAGCGATTAATGAAGCACAT 59.292 34.615 0.00 0.00 41.45 3.21
415 416 6.048509 TGAAGATAGCGATTAATGAAGCACA 58.951 36.000 0.00 0.00 0.00 4.57
416 417 6.347240 CCTGAAGATAGCGATTAATGAAGCAC 60.347 42.308 0.00 0.00 0.00 4.40
417 418 5.698089 CCTGAAGATAGCGATTAATGAAGCA 59.302 40.000 0.00 0.00 0.00 3.91
418 419 5.928839 TCCTGAAGATAGCGATTAATGAAGC 59.071 40.000 0.00 0.00 0.00 3.86
419 420 7.151308 AGTCCTGAAGATAGCGATTAATGAAG 58.849 38.462 0.00 0.00 0.00 3.02
420 421 7.055667 AGTCCTGAAGATAGCGATTAATGAA 57.944 36.000 0.00 0.00 0.00 2.57
421 422 6.656632 AGTCCTGAAGATAGCGATTAATGA 57.343 37.500 0.00 0.00 0.00 2.57
422 423 6.146837 CCAAGTCCTGAAGATAGCGATTAATG 59.853 42.308 0.00 0.00 0.00 1.90
423 424 6.042093 TCCAAGTCCTGAAGATAGCGATTAAT 59.958 38.462 0.00 0.00 0.00 1.40
424 425 5.362717 TCCAAGTCCTGAAGATAGCGATTAA 59.637 40.000 0.00 0.00 0.00 1.40
425 426 4.893524 TCCAAGTCCTGAAGATAGCGATTA 59.106 41.667 0.00 0.00 0.00 1.75
426 427 3.706594 TCCAAGTCCTGAAGATAGCGATT 59.293 43.478 0.00 0.00 0.00 3.34
427 428 3.300388 TCCAAGTCCTGAAGATAGCGAT 58.700 45.455 0.00 0.00 0.00 4.58
428 429 2.690497 CTCCAAGTCCTGAAGATAGCGA 59.310 50.000 0.00 0.00 0.00 4.93
429 430 2.690497 TCTCCAAGTCCTGAAGATAGCG 59.310 50.000 0.00 0.00 0.00 4.26
430 431 4.953940 ATCTCCAAGTCCTGAAGATAGC 57.046 45.455 0.00 0.00 0.00 2.97
431 432 8.428063 ACAATAATCTCCAAGTCCTGAAGATAG 58.572 37.037 0.00 0.00 0.00 2.08
432 433 8.324191 ACAATAATCTCCAAGTCCTGAAGATA 57.676 34.615 0.00 0.00 0.00 1.98
433 434 7.205515 ACAATAATCTCCAAGTCCTGAAGAT 57.794 36.000 0.00 0.00 0.00 2.40
434 435 6.627087 ACAATAATCTCCAAGTCCTGAAGA 57.373 37.500 0.00 0.00 0.00 2.87
435 436 6.656693 ACAACAATAATCTCCAAGTCCTGAAG 59.343 38.462 0.00 0.00 0.00 3.02
436 437 6.542821 ACAACAATAATCTCCAAGTCCTGAA 58.457 36.000 0.00 0.00 0.00 3.02
437 438 6.126863 ACAACAATAATCTCCAAGTCCTGA 57.873 37.500 0.00 0.00 0.00 3.86
438 439 6.036083 CGTACAACAATAATCTCCAAGTCCTG 59.964 42.308 0.00 0.00 0.00 3.86
439 440 6.106673 CGTACAACAATAATCTCCAAGTCCT 58.893 40.000 0.00 0.00 0.00 3.85
440 441 5.873164 ACGTACAACAATAATCTCCAAGTCC 59.127 40.000 0.00 0.00 0.00 3.85
441 442 6.672357 GCACGTACAACAATAATCTCCAAGTC 60.672 42.308 0.00 0.00 0.00 3.01
442 443 5.121768 GCACGTACAACAATAATCTCCAAGT 59.878 40.000 0.00 0.00 0.00 3.16
443 444 5.121611 TGCACGTACAACAATAATCTCCAAG 59.878 40.000 0.00 0.00 0.00 3.61
444 445 4.998033 TGCACGTACAACAATAATCTCCAA 59.002 37.500 0.00 0.00 0.00 3.53
445 446 4.570930 TGCACGTACAACAATAATCTCCA 58.429 39.130 0.00 0.00 0.00 3.86
446 447 5.293324 TGATGCACGTACAACAATAATCTCC 59.707 40.000 0.00 0.00 0.00 3.71
447 448 6.185399 GTGATGCACGTACAACAATAATCTC 58.815 40.000 0.00 0.00 0.00 2.75
448 449 6.106877 GTGATGCACGTACAACAATAATCT 57.893 37.500 0.00 0.00 0.00 2.40
466 467 3.878103 ACCTCTAGTAGTAGCACGTGATG 59.122 47.826 22.23 0.00 0.00 3.07
467 468 4.128643 GACCTCTAGTAGTAGCACGTGAT 58.871 47.826 22.23 17.40 0.00 3.06
468 469 3.529533 GACCTCTAGTAGTAGCACGTGA 58.470 50.000 22.23 0.00 0.00 4.35
469 470 2.613133 GGACCTCTAGTAGTAGCACGTG 59.387 54.545 12.28 12.28 0.00 4.49
470 471 2.741228 CGGACCTCTAGTAGTAGCACGT 60.741 54.545 0.00 0.00 0.00 4.49
471 472 1.865970 CGGACCTCTAGTAGTAGCACG 59.134 57.143 0.00 0.00 0.00 5.34
472 473 2.220313 CCGGACCTCTAGTAGTAGCAC 58.780 57.143 0.00 0.00 0.00 4.40
473 474 1.476471 GCCGGACCTCTAGTAGTAGCA 60.476 57.143 5.05 0.00 0.00 3.49
474 475 1.202794 AGCCGGACCTCTAGTAGTAGC 60.203 57.143 5.05 0.00 0.00 3.58
475 476 2.550639 GGAGCCGGACCTCTAGTAGTAG 60.551 59.091 5.05 0.00 32.43 2.57
476 477 1.419387 GGAGCCGGACCTCTAGTAGTA 59.581 57.143 5.05 0.00 32.43 1.82
477 478 0.183252 GGAGCCGGACCTCTAGTAGT 59.817 60.000 5.05 0.00 32.43 2.73
478 479 0.475044 AGGAGCCGGACCTCTAGTAG 59.525 60.000 5.05 0.00 31.43 2.57
479 480 2.630297 AGGAGCCGGACCTCTAGTA 58.370 57.895 5.05 0.00 31.43 1.82
480 481 3.429284 AGGAGCCGGACCTCTAGT 58.571 61.111 5.05 0.00 31.43 2.57
485 486 0.901580 TTTTACGAGGAGCCGGACCT 60.902 55.000 18.36 18.36 40.80 3.85
486 487 0.037046 TTTTTACGAGGAGCCGGACC 60.037 55.000 5.05 8.01 0.00 4.46
487 488 1.067354 TCTTTTTACGAGGAGCCGGAC 60.067 52.381 5.05 0.00 0.00 4.79
488 489 1.067354 GTCTTTTTACGAGGAGCCGGA 60.067 52.381 5.05 0.00 0.00 5.14
489 490 1.356938 GTCTTTTTACGAGGAGCCGG 58.643 55.000 0.00 0.00 0.00 6.13
490 491 1.067071 AGGTCTTTTTACGAGGAGCCG 60.067 52.381 0.00 0.00 0.00 5.52
491 492 2.619147 GAGGTCTTTTTACGAGGAGCC 58.381 52.381 0.00 0.00 0.00 4.70
492 493 2.260481 CGAGGTCTTTTTACGAGGAGC 58.740 52.381 0.00 0.00 0.00 4.70
493 494 2.877335 CCGAGGTCTTTTTACGAGGAG 58.123 52.381 0.00 0.00 0.00 3.69
494 495 1.067354 GCCGAGGTCTTTTTACGAGGA 60.067 52.381 0.00 0.00 0.00 3.71
495 496 1.067071 AGCCGAGGTCTTTTTACGAGG 60.067 52.381 0.00 0.00 0.00 4.63
496 497 1.993370 CAGCCGAGGTCTTTTTACGAG 59.007 52.381 0.00 0.00 0.00 4.18
497 498 1.342174 ACAGCCGAGGTCTTTTTACGA 59.658 47.619 0.00 0.00 0.00 3.43
498 499 1.725164 GACAGCCGAGGTCTTTTTACG 59.275 52.381 0.00 0.00 32.54 3.18
499 500 2.737252 CTGACAGCCGAGGTCTTTTTAC 59.263 50.000 0.00 0.00 36.26 2.01
500 501 2.870435 GCTGACAGCCGAGGTCTTTTTA 60.870 50.000 17.01 0.00 34.48 1.52
501 502 1.884235 CTGACAGCCGAGGTCTTTTT 58.116 50.000 0.00 0.00 36.26 1.94
502 503 0.603975 GCTGACAGCCGAGGTCTTTT 60.604 55.000 17.01 0.00 34.48 2.27
503 504 1.004440 GCTGACAGCCGAGGTCTTT 60.004 57.895 17.01 0.00 34.48 2.52
504 505 2.659610 GCTGACAGCCGAGGTCTT 59.340 61.111 17.01 0.00 34.48 3.01
505 506 3.753434 CGCTGACAGCCGAGGTCT 61.753 66.667 21.55 0.00 38.18 3.85
506 507 4.803426 CCGCTGACAGCCGAGGTC 62.803 72.222 21.55 0.00 38.18 3.85
523 524 2.614829 TACTTAATTCCTGGCTCCGC 57.385 50.000 0.00 0.00 0.00 5.54
524 525 4.336889 TGATACTTAATTCCTGGCTCCG 57.663 45.455 0.00 0.00 0.00 4.63
525 526 5.532779 CCTTTGATACTTAATTCCTGGCTCC 59.467 44.000 0.00 0.00 0.00 4.70
526 527 5.532779 CCCTTTGATACTTAATTCCTGGCTC 59.467 44.000 0.00 0.00 0.00 4.70
527 528 5.449553 CCCTTTGATACTTAATTCCTGGCT 58.550 41.667 0.00 0.00 0.00 4.75
528 529 4.584743 CCCCTTTGATACTTAATTCCTGGC 59.415 45.833 0.00 0.00 0.00 4.85
529 530 4.584743 GCCCCTTTGATACTTAATTCCTGG 59.415 45.833 0.00 0.00 0.00 4.45
530 531 4.584743 GGCCCCTTTGATACTTAATTCCTG 59.415 45.833 0.00 0.00 0.00 3.86
531 532 4.231890 TGGCCCCTTTGATACTTAATTCCT 59.768 41.667 0.00 0.00 0.00 3.36
532 533 4.542697 TGGCCCCTTTGATACTTAATTCC 58.457 43.478 0.00 0.00 0.00 3.01
533 534 6.538945 TTTGGCCCCTTTGATACTTAATTC 57.461 37.500 0.00 0.00 0.00 2.17
534 535 6.728632 TCTTTTGGCCCCTTTGATACTTAATT 59.271 34.615 0.00 0.00 0.00 1.40
535 536 6.154534 GTCTTTTGGCCCCTTTGATACTTAAT 59.845 38.462 0.00 0.00 0.00 1.40
536 537 5.479027 GTCTTTTGGCCCCTTTGATACTTAA 59.521 40.000 0.00 0.00 0.00 1.85
537 538 5.014202 GTCTTTTGGCCCCTTTGATACTTA 58.986 41.667 0.00 0.00 0.00 2.24
538 539 3.832490 GTCTTTTGGCCCCTTTGATACTT 59.168 43.478 0.00 0.00 0.00 2.24
539 540 3.076032 AGTCTTTTGGCCCCTTTGATACT 59.924 43.478 0.00 0.00 0.00 2.12
540 541 3.431415 AGTCTTTTGGCCCCTTTGATAC 58.569 45.455 0.00 0.00 0.00 2.24
541 542 3.075283 TGAGTCTTTTGGCCCCTTTGATA 59.925 43.478 0.00 0.00 0.00 2.15
542 543 2.158325 TGAGTCTTTTGGCCCCTTTGAT 60.158 45.455 0.00 0.00 0.00 2.57
543 544 1.216678 TGAGTCTTTTGGCCCCTTTGA 59.783 47.619 0.00 0.00 0.00 2.69
544 545 1.703411 TGAGTCTTTTGGCCCCTTTG 58.297 50.000 0.00 0.00 0.00 2.77
545 546 2.434336 GTTTGAGTCTTTTGGCCCCTTT 59.566 45.455 0.00 0.00 0.00 3.11
546 547 2.039418 GTTTGAGTCTTTTGGCCCCTT 58.961 47.619 0.00 0.00 0.00 3.95
547 548 1.217942 AGTTTGAGTCTTTTGGCCCCT 59.782 47.619 0.00 0.00 0.00 4.79
548 549 1.704641 AGTTTGAGTCTTTTGGCCCC 58.295 50.000 0.00 0.00 0.00 5.80
549 550 3.819564 AAAGTTTGAGTCTTTTGGCCC 57.180 42.857 0.00 0.00 32.14 5.80
562 563 3.254657 TGCCCTCCGTTATCAAAAGTTTG 59.745 43.478 0.00 0.00 39.48 2.93
563 564 3.492337 TGCCCTCCGTTATCAAAAGTTT 58.508 40.909 0.00 0.00 0.00 2.66
564 565 3.149005 TGCCCTCCGTTATCAAAAGTT 57.851 42.857 0.00 0.00 0.00 2.66
565 566 2.871096 TGCCCTCCGTTATCAAAAGT 57.129 45.000 0.00 0.00 0.00 2.66
566 567 3.254657 TGTTTGCCCTCCGTTATCAAAAG 59.745 43.478 0.00 0.00 0.00 2.27
567 568 3.223435 TGTTTGCCCTCCGTTATCAAAA 58.777 40.909 0.00 0.00 0.00 2.44
568 569 2.865079 TGTTTGCCCTCCGTTATCAAA 58.135 42.857 0.00 0.00 0.00 2.69
569 570 2.570415 TGTTTGCCCTCCGTTATCAA 57.430 45.000 0.00 0.00 0.00 2.57
570 571 2.570415 TTGTTTGCCCTCCGTTATCA 57.430 45.000 0.00 0.00 0.00 2.15
571 572 4.196971 ACTATTGTTTGCCCTCCGTTATC 58.803 43.478 0.00 0.00 0.00 1.75
572 573 4.230745 ACTATTGTTTGCCCTCCGTTAT 57.769 40.909 0.00 0.00 0.00 1.89
573 574 3.706600 ACTATTGTTTGCCCTCCGTTA 57.293 42.857 0.00 0.00 0.00 3.18
574 575 2.579410 ACTATTGTTTGCCCTCCGTT 57.421 45.000 0.00 0.00 0.00 4.44
575 576 3.706600 TTACTATTGTTTGCCCTCCGT 57.293 42.857 0.00 0.00 0.00 4.69
576 577 6.687081 TTTATTACTATTGTTTGCCCTCCG 57.313 37.500 0.00 0.00 0.00 4.63
577 578 8.007405 ACATTTATTACTATTGTTTGCCCTCC 57.993 34.615 0.00 0.00 0.00 4.30
618 619 9.486497 CTGCTAGTTAGATGATGAACAATGTAT 57.514 33.333 0.00 0.00 0.00 2.29
619 620 7.439356 GCTGCTAGTTAGATGATGAACAATGTA 59.561 37.037 0.00 0.00 0.00 2.29
620 621 6.259608 GCTGCTAGTTAGATGATGAACAATGT 59.740 38.462 0.00 0.00 0.00 2.71
621 622 6.259387 TGCTGCTAGTTAGATGATGAACAATG 59.741 38.462 0.00 0.00 0.00 2.82
622 623 6.351711 TGCTGCTAGTTAGATGATGAACAAT 58.648 36.000 0.00 0.00 0.00 2.71
623 624 5.733676 TGCTGCTAGTTAGATGATGAACAA 58.266 37.500 0.00 0.00 0.00 2.83
624 625 5.343307 TGCTGCTAGTTAGATGATGAACA 57.657 39.130 0.00 0.00 0.00 3.18
625 626 6.668541 TTTGCTGCTAGTTAGATGATGAAC 57.331 37.500 0.00 0.00 0.00 3.18
626 627 7.011763 GTGATTTGCTGCTAGTTAGATGATGAA 59.988 37.037 0.00 0.00 0.00 2.57
627 628 6.481313 GTGATTTGCTGCTAGTTAGATGATGA 59.519 38.462 0.00 0.00 0.00 2.92
628 629 6.482641 AGTGATTTGCTGCTAGTTAGATGATG 59.517 38.462 0.00 0.00 0.00 3.07
629 630 6.482641 CAGTGATTTGCTGCTAGTTAGATGAT 59.517 38.462 0.00 0.00 0.00 2.45
630 631 5.814188 CAGTGATTTGCTGCTAGTTAGATGA 59.186 40.000 0.00 0.00 0.00 2.92
631 632 5.814188 TCAGTGATTTGCTGCTAGTTAGATG 59.186 40.000 0.00 0.00 34.21 2.90
632 633 5.982356 TCAGTGATTTGCTGCTAGTTAGAT 58.018 37.500 0.00 0.00 34.21 1.98
633 634 5.405935 TCAGTGATTTGCTGCTAGTTAGA 57.594 39.130 0.00 0.00 34.21 2.10
634 635 6.047870 AGATCAGTGATTTGCTGCTAGTTAG 58.952 40.000 7.16 0.00 34.21 2.34
635 636 5.982356 AGATCAGTGATTTGCTGCTAGTTA 58.018 37.500 7.16 0.00 34.21 2.24
636 637 4.841422 AGATCAGTGATTTGCTGCTAGTT 58.159 39.130 7.16 0.00 34.21 2.24
637 638 4.484537 AGATCAGTGATTTGCTGCTAGT 57.515 40.909 7.16 0.00 34.21 2.57
638 639 5.570344 CAAAGATCAGTGATTTGCTGCTAG 58.430 41.667 7.16 0.00 34.21 3.42
639 640 5.556355 CAAAGATCAGTGATTTGCTGCTA 57.444 39.130 7.16 0.00 34.21 3.49
640 641 4.436242 CAAAGATCAGTGATTTGCTGCT 57.564 40.909 7.16 0.00 34.21 4.24
645 646 3.181503 CCGGAGCAAAGATCAGTGATTTG 60.182 47.826 7.16 10.60 37.07 2.32
646 647 3.012518 CCGGAGCAAAGATCAGTGATTT 58.987 45.455 7.16 0.00 0.00 2.17
647 648 2.237143 TCCGGAGCAAAGATCAGTGATT 59.763 45.455 7.16 0.00 0.00 2.57
648 649 1.833630 TCCGGAGCAAAGATCAGTGAT 59.166 47.619 4.98 4.98 0.00 3.06
649 650 1.205655 CTCCGGAGCAAAGATCAGTGA 59.794 52.381 20.67 0.00 0.00 3.41
650 651 1.649664 CTCCGGAGCAAAGATCAGTG 58.350 55.000 20.67 0.00 0.00 3.66
651 652 0.539051 CCTCCGGAGCAAAGATCAGT 59.461 55.000 26.87 0.00 0.00 3.41
652 653 0.179062 CCCTCCGGAGCAAAGATCAG 60.179 60.000 26.87 8.74 0.00 2.90
653 654 0.909610 ACCCTCCGGAGCAAAGATCA 60.910 55.000 26.87 0.00 0.00 2.92
654 655 0.253327 AACCCTCCGGAGCAAAGATC 59.747 55.000 26.87 0.00 0.00 2.75
655 656 0.253327 GAACCCTCCGGAGCAAAGAT 59.747 55.000 26.87 8.61 0.00 2.40
656 657 1.125093 TGAACCCTCCGGAGCAAAGA 61.125 55.000 26.87 6.28 0.00 2.52
657 658 0.674895 CTGAACCCTCCGGAGCAAAG 60.675 60.000 26.87 15.69 0.00 2.77
658 659 1.374947 CTGAACCCTCCGGAGCAAA 59.625 57.895 26.87 8.06 0.00 3.68
659 660 3.068881 CTGAACCCTCCGGAGCAA 58.931 61.111 26.87 7.70 0.00 3.91
660 661 3.706373 GCTGAACCCTCCGGAGCA 61.706 66.667 26.87 16.90 0.00 4.26
661 662 3.394836 AGCTGAACCCTCCGGAGC 61.395 66.667 26.87 13.85 0.00 4.70
662 663 0.970937 TACAGCTGAACCCTCCGGAG 60.971 60.000 25.36 25.36 0.00 4.63
663 664 0.543410 TTACAGCTGAACCCTCCGGA 60.543 55.000 23.35 2.93 0.00 5.14
664 665 0.323629 TTTACAGCTGAACCCTCCGG 59.676 55.000 23.35 0.00 0.00 5.14
665 666 2.178912 TTTTACAGCTGAACCCTCCG 57.821 50.000 23.35 0.00 0.00 4.63
666 667 4.079253 TCATTTTTACAGCTGAACCCTCC 58.921 43.478 23.35 0.00 0.00 4.30
667 668 5.461526 GTTCATTTTTACAGCTGAACCCTC 58.538 41.667 23.35 0.00 40.87 4.30
668 669 4.023193 CGTTCATTTTTACAGCTGAACCCT 60.023 41.667 23.35 0.00 42.75 4.34
669 670 4.226761 CGTTCATTTTTACAGCTGAACCC 58.773 43.478 23.35 0.00 42.75 4.11
670 671 4.675114 CACGTTCATTTTTACAGCTGAACC 59.325 41.667 23.35 0.00 42.75 3.62
671 672 4.675114 CCACGTTCATTTTTACAGCTGAAC 59.325 41.667 23.35 10.79 42.44 3.18
672 673 4.576873 TCCACGTTCATTTTTACAGCTGAA 59.423 37.500 23.35 7.64 0.00 3.02
673 674 4.024387 GTCCACGTTCATTTTTACAGCTGA 60.024 41.667 23.35 0.48 0.00 4.26
674 675 4.219033 GTCCACGTTCATTTTTACAGCTG 58.781 43.478 13.48 13.48 0.00 4.24
675 676 3.880490 TGTCCACGTTCATTTTTACAGCT 59.120 39.130 0.00 0.00 0.00 4.24
676 677 4.217754 TGTCCACGTTCATTTTTACAGC 57.782 40.909 0.00 0.00 0.00 4.40
677 678 4.320202 CCCTGTCCACGTTCATTTTTACAG 60.320 45.833 0.00 0.00 34.33 2.74
678 679 3.566322 CCCTGTCCACGTTCATTTTTACA 59.434 43.478 0.00 0.00 0.00 2.41
679 680 3.057806 CCCCTGTCCACGTTCATTTTTAC 60.058 47.826 0.00 0.00 0.00 2.01
680 681 3.150767 CCCCTGTCCACGTTCATTTTTA 58.849 45.455 0.00 0.00 0.00 1.52
681 682 1.960689 CCCCTGTCCACGTTCATTTTT 59.039 47.619 0.00 0.00 0.00 1.94
682 683 1.616159 CCCCTGTCCACGTTCATTTT 58.384 50.000 0.00 0.00 0.00 1.82
683 684 0.251165 CCCCCTGTCCACGTTCATTT 60.251 55.000 0.00 0.00 0.00 2.32
684 685 1.131303 TCCCCCTGTCCACGTTCATT 61.131 55.000 0.00 0.00 0.00 2.57
685 686 1.537889 TCCCCCTGTCCACGTTCAT 60.538 57.895 0.00 0.00 0.00 2.57
686 687 2.122769 TCCCCCTGTCCACGTTCA 60.123 61.111 0.00 0.00 0.00 3.18
687 688 1.765597 AACTCCCCCTGTCCACGTTC 61.766 60.000 0.00 0.00 0.00 3.95
688 689 0.472352 TAACTCCCCCTGTCCACGTT 60.472 55.000 0.00 0.00 0.00 3.99
689 690 0.472352 TTAACTCCCCCTGTCCACGT 60.472 55.000 0.00 0.00 0.00 4.49
690 691 0.909623 ATTAACTCCCCCTGTCCACG 59.090 55.000 0.00 0.00 0.00 4.94
691 692 2.723273 CAATTAACTCCCCCTGTCCAC 58.277 52.381 0.00 0.00 0.00 4.02
692 693 1.005450 GCAATTAACTCCCCCTGTCCA 59.995 52.381 0.00 0.00 0.00 4.02
693 694 1.005450 TGCAATTAACTCCCCCTGTCC 59.995 52.381 0.00 0.00 0.00 4.02
694 695 2.507407 TGCAATTAACTCCCCCTGTC 57.493 50.000 0.00 0.00 0.00 3.51
695 696 2.557452 CCTTGCAATTAACTCCCCCTGT 60.557 50.000 0.00 0.00 0.00 4.00
696 697 2.102578 CCTTGCAATTAACTCCCCCTG 58.897 52.381 0.00 0.00 0.00 4.45
697 698 2.000048 TCCTTGCAATTAACTCCCCCT 59.000 47.619 0.00 0.00 0.00 4.79
698 699 2.496070 GTTCCTTGCAATTAACTCCCCC 59.504 50.000 13.87 0.00 0.00 5.40
699 700 3.431415 AGTTCCTTGCAATTAACTCCCC 58.569 45.455 16.70 0.00 0.00 4.81
700 701 4.398358 GGTAGTTCCTTGCAATTAACTCCC 59.602 45.833 22.70 18.94 34.23 4.30
787 800 4.498345 CCGTTTTGCAACACTTAGGCTTAA 60.498 41.667 13.50 0.00 32.54 1.85
1110 1147 0.107081 TCGTCGGAGGAGGAGATCTC 59.893 60.000 14.75 14.75 41.71 2.75
1145 1182 1.286553 ACCCTAGCTCTAGCACTGACT 59.713 52.381 4.54 0.00 45.16 3.41
1240 1296 6.670695 TCAATGCTAGCAGGAATCTACATA 57.329 37.500 23.89 0.00 0.00 2.29
1326 1383 2.027625 GCTACACGGCGCTCAGTTT 61.028 57.895 6.90 1.09 0.00 2.66
1786 1965 5.813080 AAACACTCTGGTCAACTAAACAC 57.187 39.130 0.00 0.00 0.00 3.32
1810 1989 3.654414 ACACTGCTACTTCTAGTGCAAC 58.346 45.455 0.00 0.00 44.22 4.17
1811 1990 4.336889 AACACTGCTACTTCTAGTGCAA 57.663 40.909 0.00 0.00 44.22 4.08
1812 1991 4.336889 AAACACTGCTACTTCTAGTGCA 57.663 40.909 0.00 0.00 44.22 4.57
1813 1992 5.471257 ACTAAACACTGCTACTTCTAGTGC 58.529 41.667 0.00 0.00 44.22 4.40
1814 1993 7.115095 GTCAACTAAACACTGCTACTTCTAGTG 59.885 40.741 0.00 0.00 45.48 2.74
1815 1994 7.146648 GTCAACTAAACACTGCTACTTCTAGT 58.853 38.462 0.00 0.00 0.00 2.57
1816 1995 6.586844 GGTCAACTAAACACTGCTACTTCTAG 59.413 42.308 0.00 0.00 0.00 2.43
1817 1996 6.041182 TGGTCAACTAAACACTGCTACTTCTA 59.959 38.462 0.00 0.00 0.00 2.10
1818 1997 5.163343 TGGTCAACTAAACACTGCTACTTCT 60.163 40.000 0.00 0.00 0.00 2.85
1819 1998 5.054477 TGGTCAACTAAACACTGCTACTTC 58.946 41.667 0.00 0.00 0.00 3.01
1820 1999 5.031066 TGGTCAACTAAACACTGCTACTT 57.969 39.130 0.00 0.00 0.00 2.24
1821 2000 4.101119 ACTGGTCAACTAAACACTGCTACT 59.899 41.667 0.00 0.00 0.00 2.57
1822 2001 4.211374 CACTGGTCAACTAAACACTGCTAC 59.789 45.833 0.00 0.00 0.00 3.58
1823 2002 4.141801 ACACTGGTCAACTAAACACTGCTA 60.142 41.667 0.00 0.00 0.00 3.49
1824 2003 3.206150 CACTGGTCAACTAAACACTGCT 58.794 45.455 0.00 0.00 0.00 4.24
1825 2004 2.943033 ACACTGGTCAACTAAACACTGC 59.057 45.455 0.00 0.00 0.00 4.40
1826 2005 5.597806 TCTACACTGGTCAACTAAACACTG 58.402 41.667 0.00 0.00 0.00 3.66
1827 2006 5.864418 TCTACACTGGTCAACTAAACACT 57.136 39.130 0.00 0.00 0.00 3.55
1828 2007 5.107065 GCATCTACACTGGTCAACTAAACAC 60.107 44.000 0.00 0.00 0.00 3.32
1829 2008 4.994852 GCATCTACACTGGTCAACTAAACA 59.005 41.667 0.00 0.00 0.00 2.83
1830 2009 5.238583 AGCATCTACACTGGTCAACTAAAC 58.761 41.667 0.00 0.00 0.00 2.01
1831 2010 5.483685 AGCATCTACACTGGTCAACTAAA 57.516 39.130 0.00 0.00 0.00 1.85
1832 2011 6.599356 TTAGCATCTACACTGGTCAACTAA 57.401 37.500 0.00 0.00 0.00 2.24
1833 2012 6.791867 ATTAGCATCTACACTGGTCAACTA 57.208 37.500 0.00 0.00 0.00 2.24
1834 2013 5.683876 ATTAGCATCTACACTGGTCAACT 57.316 39.130 0.00 0.00 0.00 3.16
1835 2014 6.743575 AAATTAGCATCTACACTGGTCAAC 57.256 37.500 0.00 0.00 0.00 3.18
1836 2015 7.759489 AAAAATTAGCATCTACACTGGTCAA 57.241 32.000 0.00 0.00 0.00 3.18
1837 2016 8.856153 TTAAAAATTAGCATCTACACTGGTCA 57.144 30.769 0.00 0.00 0.00 4.02
1840 2019 9.520204 CCAATTAAAAATTAGCATCTACACTGG 57.480 33.333 0.00 0.00 0.00 4.00
1841 2020 9.520204 CCCAATTAAAAATTAGCATCTACACTG 57.480 33.333 0.00 0.00 0.00 3.66
1842 2021 8.695456 CCCCAATTAAAAATTAGCATCTACACT 58.305 33.333 0.00 0.00 0.00 3.55
1843 2022 8.474831 ACCCCAATTAAAAATTAGCATCTACAC 58.525 33.333 0.00 0.00 0.00 2.90
1844 2023 8.602472 ACCCCAATTAAAAATTAGCATCTACA 57.398 30.769 0.00 0.00 0.00 2.74
1846 2025 9.930158 ACTACCCCAATTAAAAATTAGCATCTA 57.070 29.630 0.00 0.00 0.00 1.98
1847 2026 8.838649 ACTACCCCAATTAAAAATTAGCATCT 57.161 30.769 0.00 0.00 0.00 2.90
1861 2040 8.999895 AGAACTACAACATATACTACCCCAATT 58.000 33.333 0.00 0.00 0.00 2.32
1862 2041 8.562949 AGAACTACAACATATACTACCCCAAT 57.437 34.615 0.00 0.00 0.00 3.16
1863 2042 7.983166 AGAACTACAACATATACTACCCCAA 57.017 36.000 0.00 0.00 0.00 4.12
1864 2043 7.983166 AAGAACTACAACATATACTACCCCA 57.017 36.000 0.00 0.00 0.00 4.96
1865 2044 9.924650 CATAAGAACTACAACATATACTACCCC 57.075 37.037 0.00 0.00 0.00 4.95
1866 2045 9.420551 GCATAAGAACTACAACATATACTACCC 57.579 37.037 0.00 0.00 0.00 3.69
2076 2259 1.342819 CTCCTAGCATGCCTACTGTCC 59.657 57.143 15.66 0.00 0.00 4.02
2147 2330 1.963515 AGTTGGCAACCACATTCCTTC 59.036 47.619 25.81 0.00 30.78 3.46
2159 2342 4.634012 ACTAGGTTGTCATAGTTGGCAA 57.366 40.909 0.00 0.00 44.90 4.52
2281 2476 3.117776 TCATTCTTCATGCCAGCCATAGT 60.118 43.478 0.00 0.00 32.13 2.12
2461 2656 2.093288 CCTTGCTGAGCTCATCAACCTA 60.093 50.000 25.11 8.86 37.52 3.08
2569 2765 2.924421 CTGGAGCTTTAACTCATCCCC 58.076 52.381 0.00 0.00 38.50 4.81
2743 2939 5.319043 ACCACCCTTCACAAAAGATAAGA 57.681 39.130 0.00 0.00 0.00 2.10
2894 3112 9.979270 CATTAGCTAAATAACATAGCATACTGC 57.021 33.333 10.85 0.00 46.49 4.40
2929 3151 5.282055 TCAGAGGTATAACTTGAGCCATG 57.718 43.478 0.00 0.00 0.00 3.66
3051 3324 6.517864 GCCATCAAAGCAATCTAATAGCCATT 60.518 38.462 0.00 0.00 0.00 3.16
3058 3331 5.927281 AACAGCCATCAAAGCAATCTAAT 57.073 34.783 0.00 0.00 0.00 1.73
3082 3377 0.796312 CGACACTAACTTGCGCCATT 59.204 50.000 4.18 0.00 0.00 3.16
3099 3394 0.888619 TTTGTGTGTGGCCAAAACGA 59.111 45.000 7.24 2.88 0.00 3.85
3106 3401 1.588667 CAGCGTTTTGTGTGTGGCC 60.589 57.895 0.00 0.00 0.00 5.36
3109 3404 2.840396 CGTCAGCGTTTTGTGTGTG 58.160 52.632 0.00 0.00 0.00 3.82
3151 3468 3.058570 CCGCGCATTGCTATTATAACCAA 60.059 43.478 8.75 0.00 43.27 3.67
3204 3539 2.613725 CGTCGCCTAACCCTAGGTTTTT 60.614 50.000 8.29 0.33 44.33 1.94
3205 3540 1.066645 CGTCGCCTAACCCTAGGTTTT 60.067 52.381 8.29 3.00 44.33 2.43
3226 3564 2.835431 CTCAGGGATCGCCTCCGT 60.835 66.667 6.09 0.00 46.01 4.69
3294 3641 3.997021 CGAAGAGCACTACATTTCCTTGT 59.003 43.478 0.00 0.00 0.00 3.16
3306 3659 1.273886 GAGAAAGACCCGAAGAGCACT 59.726 52.381 0.00 0.00 0.00 4.40
3310 3663 1.404851 GCCTGAGAAAGACCCGAAGAG 60.405 57.143 0.00 0.00 0.00 2.85
3321 3674 0.326264 GAAGCTGGGAGCCTGAGAAA 59.674 55.000 0.00 0.00 43.77 2.52
3354 3708 1.205055 GGATTCGTCCCCTCTCCTTT 58.795 55.000 0.00 0.00 0.00 3.11
3399 3753 2.734591 GCTCATACGCCATCGGGA 59.265 61.111 0.00 0.00 40.69 5.14
3457 3811 1.347050 CGGCTCCATGAGATCCATCTT 59.653 52.381 0.00 0.00 37.25 2.40
3791 4174 4.978099 TCTCTGCATTTTTCTCCTTGAGT 58.022 39.130 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.