Multiple sequence alignment - TraesCS2A01G467900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G467900 chr2A 100.000 5133 0 0 1 5133 711976114 711981246 0.000000e+00 9479.0
1 TraesCS2A01G467900 chr2B 87.322 2311 136 67 396 2647 688459409 688461621 0.000000e+00 2499.0
2 TraesCS2A01G467900 chr2B 93.606 1517 60 13 2726 4233 688461619 688463107 0.000000e+00 2230.0
3 TraesCS2A01G467900 chr2B 90.909 1287 78 19 2967 4234 689105481 689106747 0.000000e+00 1692.0
4 TraesCS2A01G467900 chr2B 91.763 692 36 8 3535 4213 689310781 689311464 0.000000e+00 942.0
5 TraesCS2A01G467900 chr2B 90.929 452 31 5 2193 2638 689104576 689105023 2.640000e-167 599.0
6 TraesCS2A01G467900 chr2B 89.174 351 28 8 1 342 688459039 688459388 3.670000e-116 429.0
7 TraesCS2A01G467900 chr2B 91.139 316 25 3 1389 1704 689089160 689089472 4.750000e-115 425.0
8 TraesCS2A01G467900 chr2B 88.217 314 28 3 1763 2069 689104272 689104583 2.920000e-97 366.0
9 TraesCS2A01G467900 chr2B 94.030 201 12 0 2726 2926 689105271 689105471 6.460000e-79 305.0
10 TraesCS2A01G467900 chr2B 87.903 124 11 3 4351 4471 146719837 146719715 5.360000e-30 143.0
11 TraesCS2A01G467900 chr2B 100.000 31 0 0 4248 4278 36804518 36804548 2.000000e-04 58.4
12 TraesCS2A01G467900 chr2B 100.000 31 0 0 4248 4278 779966293 779966263 2.000000e-04 58.4
13 TraesCS2A01G467900 chr2D 89.332 2006 103 50 720 2647 572786789 572788761 0.000000e+00 2416.0
14 TraesCS2A01G467900 chr2D 92.893 1407 45 21 2726 4124 572788759 572790118 0.000000e+00 1993.0
15 TraesCS2A01G467900 chr2D 96.937 555 15 1 4579 5133 572792189 572792741 0.000000e+00 929.0
16 TraesCS2A01G467900 chr2D 89.587 509 26 13 1 493 572786154 572786651 5.640000e-174 621.0
17 TraesCS2A01G467900 chr2D 91.736 121 3 4 4122 4236 572791213 572791332 1.480000e-35 161.0
18 TraesCS2A01G467900 chr2D 88.281 128 11 3 4352 4477 609578313 609578188 3.200000e-32 150.0
19 TraesCS2A01G467900 chr2D 93.617 94 2 1 4230 4323 572791977 572792066 2.490000e-28 137.0
20 TraesCS2A01G467900 chr3B 89.366 536 20 17 4495 5029 309357159 309357658 1.560000e-179 640.0
21 TraesCS2A01G467900 chrUn 96.063 127 5 0 4968 5094 437878900 437878774 1.870000e-49 207.0
22 TraesCS2A01G467900 chr6B 96.063 127 5 0 4968 5094 596626731 596626857 1.870000e-49 207.0
23 TraesCS2A01G467900 chr6B 100.000 31 0 0 4204 4234 437845761 437845791 2.000000e-04 58.4
24 TraesCS2A01G467900 chr6A 96.063 127 5 0 4968 5094 84440578 84440704 1.870000e-49 207.0
25 TraesCS2A01G467900 chr6A 96.063 127 5 0 4968 5094 608876807 608876681 1.870000e-49 207.0
26 TraesCS2A01G467900 chr5B 96.063 127 5 0 4968 5094 533064544 533064670 1.870000e-49 207.0
27 TraesCS2A01G467900 chr4A 96.063 127 5 0 4968 5094 67570248 67570122 1.870000e-49 207.0
28 TraesCS2A01G467900 chr4A 100.000 34 0 0 4201 4234 57517789 57517822 4.290000e-06 63.9
29 TraesCS2A01G467900 chr1A 96.063 127 5 0 4968 5094 94789739 94789865 1.870000e-49 207.0
30 TraesCS2A01G467900 chr1A 96.063 127 5 0 4968 5094 238115371 238115497 1.870000e-49 207.0
31 TraesCS2A01G467900 chr1A 90.816 98 7 1 2635 2730 169646470 169646373 4.170000e-26 130.0
32 TraesCS2A01G467900 chr1A 96.970 33 1 0 4202 4234 470393082 470393114 7.180000e-04 56.5
33 TraesCS2A01G467900 chr5D 87.500 128 13 2 4352 4477 434051987 434052113 1.490000e-30 145.0
34 TraesCS2A01G467900 chr5D 97.561 82 2 0 2643 2724 438690578 438690497 1.930000e-29 141.0
35 TraesCS2A01G467900 chr5D 96.970 33 1 0 4204 4236 390262373 390262341 7.180000e-04 56.5
36 TraesCS2A01G467900 chr7D 92.857 98 3 3 2637 2732 141292083 141292178 6.930000e-29 139.0
37 TraesCS2A01G467900 chr7D 92.553 94 5 1 2641 2732 519264543 519264636 3.220000e-27 134.0
38 TraesCS2A01G467900 chr7D 91.667 96 6 1 2639 2732 426558894 426558989 1.160000e-26 132.0
39 TraesCS2A01G467900 chr3D 96.471 85 2 1 2641 2724 562693620 562693536 6.930000e-29 139.0
40 TraesCS2A01G467900 chr3D 90.000 110 6 4 4352 4458 475121211 475121318 2.490000e-28 137.0
41 TraesCS2A01G467900 chr7A 94.444 90 3 1 2644 2731 136806106 136806195 2.490000e-28 137.0
42 TraesCS2A01G467900 chr4D 92.784 97 3 2 2640 2732 258897761 258897665 2.490000e-28 137.0
43 TraesCS2A01G467900 chr4D 100.000 30 0 0 4202 4231 9338713 9338742 7.180000e-04 56.5
44 TraesCS2A01G467900 chr1D 94.444 90 3 1 2644 2731 355171575 355171664 2.490000e-28 137.0
45 TraesCS2A01G467900 chr5A 95.000 40 1 1 4248 4286 553495726 553495765 1.540000e-05 62.1
46 TraesCS2A01G467900 chr1B 96.970 33 1 0 4202 4234 495142894 495142926 7.180000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G467900 chr2A 711976114 711981246 5132 False 9479.000000 9479 100.000000 1 5133 1 chr2A.!!$F1 5132
1 TraesCS2A01G467900 chr2B 688459039 688463107 4068 False 1719.333333 2499 90.034000 1 4233 3 chr2B.!!$F4 4232
2 TraesCS2A01G467900 chr2B 689310781 689311464 683 False 942.000000 942 91.763000 3535 4213 1 chr2B.!!$F3 678
3 TraesCS2A01G467900 chr2B 689104272 689106747 2475 False 740.500000 1692 91.021250 1763 4234 4 chr2B.!!$F5 2471
4 TraesCS2A01G467900 chr2D 572786154 572792741 6587 False 1042.833333 2416 92.350333 1 5133 6 chr2D.!!$F1 5132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.249322 CGGTCAAGACGTTGTCACCT 60.249 55.0 0.00 0.00 34.60 4.00 F
578 621 0.664761 CCGTATTTGCATGGCCTCAG 59.335 55.0 3.32 0.00 0.00 3.35 F
2082 2193 0.310543 TTTTGATGGTGTGCAGACGC 59.689 50.0 8.03 1.82 39.24 5.19 F
2659 3042 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 1985 0.392706 TCGCCATGTGTCAACACTCT 59.607 50.0 13.94 0.00 46.55 3.24 R
2520 2653 0.107017 AGATCACTTCCCCCGCAATG 60.107 55.0 0.00 0.00 0.00 2.82 R
3438 3830 0.033642 TCCATGTCGTTGCCGTACAA 59.966 50.0 0.00 0.00 35.33 2.41 R
4318 6488 0.032017 ACCTGGGCTAGACTAGTGGG 60.032 60.0 8.33 9.96 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 4.597004 CAGGGTCTAAGTAGTGAGGTACA 58.403 47.826 0.00 0.00 0.00 2.90
144 145 0.249322 CGGTCAAGACGTTGTCACCT 60.249 55.000 0.00 0.00 34.60 4.00
235 239 2.539274 GCATTTTGAAGCAGCGTTTTGA 59.461 40.909 0.00 0.00 0.00 2.69
252 256 3.350219 TTGATCTGGTTGTAAGCCTCC 57.650 47.619 0.00 0.00 0.00 4.30
254 258 1.840635 GATCTGGTTGTAAGCCTCCCT 59.159 52.381 0.00 0.00 0.00 4.20
255 259 0.984230 TCTGGTTGTAAGCCTCCCTG 59.016 55.000 0.00 0.00 0.00 4.45
299 308 2.238084 ACTGCTAGATCTGACCACCA 57.762 50.000 5.18 0.00 0.00 4.17
327 338 6.486993 AGTCTTAGTTCAGTTTGGAATGGTTC 59.513 38.462 0.00 0.00 0.00 3.62
328 339 6.262273 GTCTTAGTTCAGTTTGGAATGGTTCA 59.738 38.462 0.00 0.00 0.00 3.18
373 387 8.881743 GCCTATGATATGAATGAAGAATCTGTC 58.118 37.037 0.00 0.00 0.00 3.51
411 425 2.278854 GCAATGCTGGTGTGTTTTTGT 58.721 42.857 0.00 0.00 0.00 2.83
480 515 3.604024 GGTACGTTACCTCCCTCCT 57.396 57.895 0.00 0.00 45.52 3.69
482 517 1.064091 GGTACGTTACCTCCCTCCTCT 60.064 57.143 0.00 0.00 45.52 3.69
496 531 2.421670 CCTCCTCTGCTGCTGAATCAAT 60.422 50.000 10.47 0.00 0.00 2.57
565 608 5.538813 TGTCTATAGTCTTGGATGCCGTATT 59.461 40.000 0.00 0.00 0.00 1.89
578 621 0.664761 CCGTATTTGCATGGCCTCAG 59.335 55.000 3.32 0.00 0.00 3.35
628 671 2.053116 GATGCCAATGCGTACGCG 60.053 61.111 32.65 20.44 45.51 6.01
629 672 3.506312 GATGCCAATGCGTACGCGG 62.506 63.158 32.65 27.65 45.51 6.46
636 679 3.538028 ATGCGTACGCGGATCCTCG 62.538 63.158 32.65 22.16 45.95 4.63
665 711 2.743636 TTTCGTTAGTCTCTGCCCAG 57.256 50.000 0.00 0.00 0.00 4.45
666 712 1.629043 TTCGTTAGTCTCTGCCCAGT 58.371 50.000 0.00 0.00 0.00 4.00
670 716 2.480419 CGTTAGTCTCTGCCCAGTTTTG 59.520 50.000 0.00 0.00 0.00 2.44
671 717 2.185004 TAGTCTCTGCCCAGTTTTGC 57.815 50.000 0.00 0.00 0.00 3.68
676 722 1.007387 CTGCCCAGTTTTGCCGTTC 60.007 57.895 0.00 0.00 0.00 3.95
683 729 2.095567 CCAGTTTTGCCGTTCAGATCAG 60.096 50.000 0.00 0.00 0.00 2.90
705 752 8.868522 TCAGAATGGTTTTTATCTCAATCTGT 57.131 30.769 0.00 0.00 37.97 3.41
706 753 8.950210 TCAGAATGGTTTTTATCTCAATCTGTC 58.050 33.333 0.00 0.00 37.97 3.51
707 754 8.954350 CAGAATGGTTTTTATCTCAATCTGTCT 58.046 33.333 0.00 0.00 34.35 3.41
708 755 8.954350 AGAATGGTTTTTATCTCAATCTGTCTG 58.046 33.333 0.00 0.00 0.00 3.51
709 756 6.500684 TGGTTTTTATCTCAATCTGTCTGC 57.499 37.500 0.00 0.00 0.00 4.26
710 757 5.122239 TGGTTTTTATCTCAATCTGTCTGCG 59.878 40.000 0.00 0.00 0.00 5.18
711 758 5.351465 GGTTTTTATCTCAATCTGTCTGCGA 59.649 40.000 0.00 0.00 0.00 5.10
712 759 6.037610 GGTTTTTATCTCAATCTGTCTGCGAT 59.962 38.462 0.00 0.00 0.00 4.58
713 760 7.414540 GGTTTTTATCTCAATCTGTCTGCGATT 60.415 37.037 0.00 0.00 0.00 3.34
714 761 7.615582 TTTTATCTCAATCTGTCTGCGATTT 57.384 32.000 0.00 0.00 0.00 2.17
715 762 6.594284 TTATCTCAATCTGTCTGCGATTTG 57.406 37.500 0.00 0.00 0.00 2.32
716 763 3.264947 TCTCAATCTGTCTGCGATTTGG 58.735 45.455 0.00 0.00 0.00 3.28
717 764 3.055891 TCTCAATCTGTCTGCGATTTGGA 60.056 43.478 0.00 0.00 0.00 3.53
718 765 3.002791 TCAATCTGTCTGCGATTTGGAC 58.997 45.455 0.00 0.00 0.00 4.02
731 778 4.453136 GCGATTTGGACTGTTTTACCACTA 59.547 41.667 0.00 0.00 33.20 2.74
735 782 7.041644 CGATTTGGACTGTTTTACCACTAGAAA 60.042 37.037 0.00 0.00 33.20 2.52
764 811 9.956720 AAGAATCTGTGAAGTGTTCTTTTTATG 57.043 29.630 0.00 0.00 36.11 1.90
768 815 7.054124 TCTGTGAAGTGTTCTTTTTATGGACT 58.946 34.615 0.00 0.00 33.64 3.85
773 820 4.213482 AGTGTTCTTTTTATGGACTCGCAC 59.787 41.667 0.00 0.00 0.00 5.34
774 821 4.024387 GTGTTCTTTTTATGGACTCGCACA 60.024 41.667 0.00 0.00 0.00 4.57
775 822 4.024387 TGTTCTTTTTATGGACTCGCACAC 60.024 41.667 0.00 0.00 0.00 3.82
776 823 2.734606 TCTTTTTATGGACTCGCACACG 59.265 45.455 0.00 0.00 42.01 4.49
787 848 2.480555 GCACACGATCTTTGCCCG 59.519 61.111 0.00 0.00 0.00 6.13
863 924 5.975693 AAATAATCCGAAAGCCAACAAGA 57.024 34.783 0.00 0.00 0.00 3.02
865 926 1.156736 ATCCGAAAGCCAACAAGACG 58.843 50.000 0.00 0.00 0.00 4.18
866 927 0.882927 TCCGAAAGCCAACAAGACGG 60.883 55.000 0.00 0.00 40.16 4.79
871 932 2.594592 GCCAACAAGACGGGCACT 60.595 61.111 0.00 0.00 46.92 4.40
872 933 2.908073 GCCAACAAGACGGGCACTG 61.908 63.158 0.00 0.00 46.92 3.66
873 934 1.227823 CCAACAAGACGGGCACTGA 60.228 57.895 0.00 0.00 38.67 3.41
874 935 1.507141 CCAACAAGACGGGCACTGAC 61.507 60.000 0.00 0.00 38.67 3.51
875 936 1.594293 AACAAGACGGGCACTGACG 60.594 57.895 0.00 0.00 38.67 4.35
876 937 3.414700 CAAGACGGGCACTGACGC 61.415 66.667 0.00 0.00 38.67 5.19
967 1052 2.687566 ACCACCCACTCCCGATCC 60.688 66.667 0.00 0.00 0.00 3.36
968 1053 3.849951 CCACCCACTCCCGATCCG 61.850 72.222 0.00 0.00 0.00 4.18
973 1058 3.606662 CACTCCCGATCCGCCGAT 61.607 66.667 0.00 0.00 0.00 4.18
974 1059 3.296054 ACTCCCGATCCGCCGATC 61.296 66.667 5.09 5.09 41.43 3.69
1025 1113 7.147497 ACCCCTCAAAATCTCATCTTTTGTTTT 60.147 33.333 8.00 0.00 41.88 2.43
1053 1141 4.995058 TCCCCCACCACCACTCCC 62.995 72.222 0.00 0.00 0.00 4.30
1476 1567 1.124780 TCTTCACCAACGACAAGGGA 58.875 50.000 0.00 0.00 0.00 4.20
1675 1771 1.377856 GTCAGCTGGCCCTTCCTTC 60.378 63.158 15.13 0.00 35.26 3.46
1676 1772 1.539869 TCAGCTGGCCCTTCCTTCT 60.540 57.895 15.13 0.00 35.26 2.85
1681 1777 1.539869 TGGCCCTTCCTTCTCTGCT 60.540 57.895 0.00 0.00 35.26 4.24
1700 1796 4.914983 TGCTCTCTTCATCTTGATTGGTT 58.085 39.130 0.00 0.00 0.00 3.67
1701 1797 5.319453 TGCTCTCTTCATCTTGATTGGTTT 58.681 37.500 0.00 0.00 0.00 3.27
1703 1799 6.072286 TGCTCTCTTCATCTTGATTGGTTTTC 60.072 38.462 0.00 0.00 0.00 2.29
1705 1801 7.444629 TCTCTTCATCTTGATTGGTTTTCTG 57.555 36.000 0.00 0.00 0.00 3.02
1706 1802 7.226441 TCTCTTCATCTTGATTGGTTTTCTGA 58.774 34.615 0.00 0.00 0.00 3.27
1707 1803 7.720957 TCTCTTCATCTTGATTGGTTTTCTGAA 59.279 33.333 0.00 0.00 0.00 3.02
1708 1804 7.651808 TCTTCATCTTGATTGGTTTTCTGAAC 58.348 34.615 0.00 0.00 0.00 3.18
1709 1805 7.503566 TCTTCATCTTGATTGGTTTTCTGAACT 59.496 33.333 0.00 0.00 0.00 3.01
1710 1806 6.973843 TCATCTTGATTGGTTTTCTGAACTG 58.026 36.000 0.00 0.00 0.00 3.16
1714 1810 8.287439 TCTTGATTGGTTTTCTGAACTGTTTA 57.713 30.769 0.00 0.00 0.00 2.01
1716 1812 8.870160 TTGATTGGTTTTCTGAACTGTTTATG 57.130 30.769 0.00 0.00 0.00 1.90
1718 1814 6.783708 TTGGTTTTCTGAACTGTTTATGGT 57.216 33.333 0.00 0.00 0.00 3.55
1720 1816 7.883391 TGGTTTTCTGAACTGTTTATGGTTA 57.117 32.000 0.00 0.00 0.00 2.85
1722 1818 8.919145 TGGTTTTCTGAACTGTTTATGGTTAAT 58.081 29.630 0.00 0.00 0.00 1.40
1748 1848 4.151121 TGATTTCTGCAATGGGTTGAAGA 58.849 39.130 0.00 0.00 46.18 2.87
1850 1950 5.702209 CCATAAATAAATGGCCCATTTCTGC 59.298 40.000 24.48 0.00 42.19 4.26
1859 1959 1.188863 CCCATTTCTGCCAGGAAAGG 58.811 55.000 0.00 0.00 38.38 3.11
1866 1966 1.216678 TCTGCCAGGAAAGGTTTTGGA 59.783 47.619 0.00 0.00 32.34 3.53
1948 2057 8.315391 TGAGTTTCAATGTGATTAGTTCAGAG 57.685 34.615 0.00 0.00 34.17 3.35
2019 2130 7.199766 TGATGTCAGTTTATGGTTTGTTGTTC 58.800 34.615 0.00 0.00 0.00 3.18
2022 2133 8.226819 TGTCAGTTTATGGTTTGTTGTTCATA 57.773 30.769 0.00 0.00 0.00 2.15
2080 2191 3.988379 TTCTTTTGATGGTGTGCAGAC 57.012 42.857 5.20 5.20 0.00 3.51
2082 2193 0.310543 TTTTGATGGTGTGCAGACGC 59.689 50.000 8.03 1.82 39.24 5.19
2135 2246 5.124457 GCTGCTTGGTGAGATTTCTTGATTA 59.876 40.000 0.00 0.00 0.00 1.75
2272 2390 4.281182 TGGACTCTCGAGCTAAAGTTTCTT 59.719 41.667 7.81 0.00 0.00 2.52
2277 2397 6.809196 ACTCTCGAGCTAAAGTTTCTTATGTG 59.191 38.462 7.81 0.00 0.00 3.21
2278 2398 6.688578 TCTCGAGCTAAAGTTTCTTATGTGT 58.311 36.000 7.81 0.00 0.00 3.72
2304 2424 6.573664 TCACTTTGATTTAATCCAGTGGTG 57.426 37.500 23.02 15.21 38.85 4.17
2333 2453 3.076621 TGGATTGTGACAGCAGACATTC 58.923 45.455 0.00 0.00 0.00 2.67
2374 2494 1.578206 GCTCCTGCCAGTTTTCGTCC 61.578 60.000 0.00 0.00 0.00 4.79
2377 2497 0.609131 CCTGCCAGTTTTCGTCCCAT 60.609 55.000 0.00 0.00 0.00 4.00
2378 2498 1.247567 CTGCCAGTTTTCGTCCCATT 58.752 50.000 0.00 0.00 0.00 3.16
2418 2549 7.836183 AGGTCCTATGAAATTATGAAAGCAGTT 59.164 33.333 0.00 0.00 0.00 3.16
2456 2587 4.077822 CAAGTTTCAGCAAGAGGAGGATT 58.922 43.478 0.00 0.00 0.00 3.01
2466 2597 4.731773 GCAAGAGGAGGATTAATGTTTGCG 60.732 45.833 0.00 0.00 30.67 4.85
2561 2698 5.639506 TCTTTCTATTCTGAACTTCTTGGCG 59.360 40.000 0.00 0.00 0.00 5.69
2645 3028 9.929180 TTTGATATGCTTCTCCTACATATGTAC 57.071 33.333 11.62 1.39 37.17 2.90
2646 3029 8.885693 TGATATGCTTCTCCTACATATGTACT 57.114 34.615 11.62 0.00 37.17 2.73
2647 3030 8.961634 TGATATGCTTCTCCTACATATGTACTC 58.038 37.037 11.62 0.00 37.17 2.59
2648 3031 6.597832 ATGCTTCTCCTACATATGTACTCC 57.402 41.667 11.62 0.00 0.00 3.85
2649 3032 4.833380 TGCTTCTCCTACATATGTACTCCC 59.167 45.833 11.62 0.00 0.00 4.30
2650 3033 5.081032 GCTTCTCCTACATATGTACTCCCT 58.919 45.833 11.62 0.00 0.00 4.20
2651 3034 5.184287 GCTTCTCCTACATATGTACTCCCTC 59.816 48.000 11.62 0.00 0.00 4.30
2652 3035 5.258216 TCTCCTACATATGTACTCCCTCC 57.742 47.826 11.62 0.00 0.00 4.30
2653 3036 4.011023 CTCCTACATATGTACTCCCTCCG 58.989 52.174 11.62 0.02 0.00 4.63
2654 3037 3.396946 TCCTACATATGTACTCCCTCCGT 59.603 47.826 11.62 0.00 0.00 4.69
2655 3038 3.757493 CCTACATATGTACTCCCTCCGTC 59.243 52.174 11.62 0.00 0.00 4.79
2656 3039 2.595238 ACATATGTACTCCCTCCGTCC 58.405 52.381 6.56 0.00 0.00 4.79
2657 3040 1.893801 CATATGTACTCCCTCCGTCCC 59.106 57.143 0.00 0.00 0.00 4.46
2658 3041 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
2659 3042 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
2660 3043 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
2661 3044 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
2662 3045 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
2663 3046 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
2664 3047 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2665 3048 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2666 3049 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2667 3050 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2668 3051 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2669 3052 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2670 3053 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2671 3054 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2672 3055 3.119245 TCCGTCCCATAATATAAGAGCGC 60.119 47.826 0.00 0.00 0.00 5.92
2673 3056 3.119101 CCGTCCCATAATATAAGAGCGCT 60.119 47.826 11.27 11.27 0.00 5.92
2674 3057 4.495422 CGTCCCATAATATAAGAGCGCTT 58.505 43.478 13.26 8.09 38.15 4.68
2675 3058 4.929808 CGTCCCATAATATAAGAGCGCTTT 59.070 41.667 13.26 1.42 35.56 3.51
2676 3059 5.408604 CGTCCCATAATATAAGAGCGCTTTT 59.591 40.000 17.98 17.98 35.56 2.27
2677 3060 6.603095 GTCCCATAATATAAGAGCGCTTTTG 58.397 40.000 22.35 5.08 35.56 2.44
2678 3061 6.426937 GTCCCATAATATAAGAGCGCTTTTGA 59.573 38.462 22.35 11.00 35.56 2.69
2679 3062 6.426937 TCCCATAATATAAGAGCGCTTTTGAC 59.573 38.462 22.35 4.04 35.56 3.18
2680 3063 6.204688 CCCATAATATAAGAGCGCTTTTGACA 59.795 38.462 22.35 8.10 35.56 3.58
2681 3064 7.072030 CCATAATATAAGAGCGCTTTTGACAC 58.928 38.462 22.35 2.46 35.56 3.67
2682 3065 7.041780 CCATAATATAAGAGCGCTTTTGACACT 60.042 37.037 22.35 5.03 35.56 3.55
2683 3066 8.978539 CATAATATAAGAGCGCTTTTGACACTA 58.021 33.333 22.35 8.24 35.56 2.74
2684 3067 7.470289 AATATAAGAGCGCTTTTGACACTAG 57.530 36.000 22.35 0.00 35.56 2.57
2685 3068 2.821991 AGAGCGCTTTTGACACTAGT 57.178 45.000 13.26 0.00 0.00 2.57
2686 3069 3.936372 AGAGCGCTTTTGACACTAGTA 57.064 42.857 13.26 0.00 0.00 1.82
2687 3070 3.839293 AGAGCGCTTTTGACACTAGTAG 58.161 45.455 13.26 0.00 0.00 2.57
2688 3071 3.256136 AGAGCGCTTTTGACACTAGTAGT 59.744 43.478 13.26 0.00 0.00 2.73
2689 3072 7.060120 TAAGAGCGCTTTTGACACTAGTAGTG 61.060 42.308 25.56 25.56 42.32 2.74
2690 3073 9.336850 TAAGAGCGCTTTTGACACTAGTAGTGT 62.337 40.741 31.34 31.34 46.96 3.55
2713 3096 9.607285 GTGTCAAAAACGCTATTATATTATGGG 57.393 33.333 0.00 0.00 35.42 4.00
2714 3097 9.562408 TGTCAAAAACGCTATTATATTATGGGA 57.438 29.630 0.00 0.00 0.00 4.37
2715 3098 9.821662 GTCAAAAACGCTATTATATTATGGGAC 57.178 33.333 0.00 0.00 0.00 4.46
2716 3099 8.714179 TCAAAAACGCTATTATATTATGGGACG 58.286 33.333 0.00 0.00 0.00 4.79
2717 3100 7.605410 AAAACGCTATTATATTATGGGACGG 57.395 36.000 0.00 0.00 0.00 4.79
2718 3101 6.534475 AACGCTATTATATTATGGGACGGA 57.466 37.500 0.00 0.00 0.00 4.69
2719 3102 6.145338 ACGCTATTATATTATGGGACGGAG 57.855 41.667 0.00 0.00 0.00 4.63
2720 3103 5.068723 ACGCTATTATATTATGGGACGGAGG 59.931 44.000 0.00 0.00 0.00 4.30
2721 3104 5.509163 CGCTATTATATTATGGGACGGAGGG 60.509 48.000 0.00 0.00 0.00 4.30
2722 3105 5.601313 GCTATTATATTATGGGACGGAGGGA 59.399 44.000 0.00 0.00 0.00 4.20
2723 3106 6.239345 GCTATTATATTATGGGACGGAGGGAG 60.239 46.154 0.00 0.00 0.00 4.30
2724 3107 1.640917 TATTATGGGACGGAGGGAGC 58.359 55.000 0.00 0.00 0.00 4.70
2752 3135 3.934068 TCCCGAATTTACAGGAAGACAC 58.066 45.455 0.00 0.00 0.00 3.67
2915 3298 6.944234 CCAGAACTGGGTATAATCCTTTTC 57.056 41.667 12.54 0.00 46.81 2.29
3111 3499 2.367894 TGTTCAATCTGGCATGCCAAAA 59.632 40.909 37.47 28.47 46.63 2.44
3137 3525 5.043732 TGGGTCTATGGGATGTTATTTGGTT 60.044 40.000 0.00 0.00 0.00 3.67
3232 3621 5.483937 ACACCAGTCCTTTATGTGTCTATCA 59.516 40.000 0.00 0.00 35.36 2.15
3276 3668 5.591877 ACAATTTGCTTCTGTCTCTGAAACT 59.408 36.000 0.00 0.00 0.00 2.66
3320 3712 4.261363 GGCGAAGATGGATTTGAAATCTCC 60.261 45.833 16.58 4.37 30.35 3.71
3329 3721 4.455606 GATTTGAAATCTCCGTCCCATCT 58.544 43.478 10.52 0.00 0.00 2.90
3341 3733 1.079127 CCCATCTGAGAACGCGGTT 60.079 57.895 12.47 1.69 0.00 4.44
3425 3817 2.636412 CGACAGTCTCCGGCTGGAA 61.636 63.158 16.91 3.98 45.87 3.53
3476 3868 3.490759 CAGCACATCACGCCGGTC 61.491 66.667 1.90 0.00 0.00 4.79
3518 3910 4.416738 GGCAAGCGGAGGAAGGCT 62.417 66.667 0.00 0.00 42.33 4.58
3960 4361 0.179134 CTGTCGGGCTTCCTCTTACG 60.179 60.000 0.00 0.00 0.00 3.18
3980 4381 3.452627 ACGGCTTGACATTTCTCCTCTAT 59.547 43.478 0.00 0.00 0.00 1.98
4040 4441 2.171237 TCCCAGAAGCGATCATGTCATT 59.829 45.455 0.00 0.00 0.00 2.57
4094 4503 1.006102 ACGAGCTTTCGACCTGTGG 60.006 57.895 1.98 0.00 36.85 4.17
4160 5675 6.094881 CGTTTGTGGTAACCTTTCATCCATAT 59.905 38.462 0.00 0.00 0.00 1.78
4297 6467 9.569122 ACTAGTTCTCTAAATTAAGTTGGCAAA 57.431 29.630 0.00 0.00 0.00 3.68
4299 6469 7.371159 AGTTCTCTAAATTAAGTTGGCAAAGC 58.629 34.615 0.00 0.00 0.00 3.51
4300 6470 5.938322 TCTCTAAATTAAGTTGGCAAAGCG 58.062 37.500 0.00 0.00 0.00 4.68
4301 6471 4.481463 TCTAAATTAAGTTGGCAAAGCGC 58.519 39.130 0.00 0.00 41.28 5.92
4302 6472 1.696988 AATTAAGTTGGCAAAGCGCG 58.303 45.000 0.00 0.00 43.84 6.86
4303 6473 0.109319 ATTAAGTTGGCAAAGCGCGG 60.109 50.000 8.83 0.00 43.84 6.46
4304 6474 1.167155 TTAAGTTGGCAAAGCGCGGA 61.167 50.000 8.83 0.00 43.84 5.54
4305 6475 1.167155 TAAGTTGGCAAAGCGCGGAA 61.167 50.000 8.83 0.00 43.84 4.30
4306 6476 2.406452 AAGTTGGCAAAGCGCGGAAG 62.406 55.000 8.83 0.00 43.84 3.46
4307 6477 2.904866 TTGGCAAAGCGCGGAAGT 60.905 55.556 8.83 0.00 43.84 3.01
4308 6478 2.485795 TTGGCAAAGCGCGGAAGTT 61.486 52.632 8.83 0.00 43.84 2.66
4309 6479 2.126850 GGCAAAGCGCGGAAGTTC 60.127 61.111 8.83 0.00 43.84 3.01
4310 6480 2.499732 GCAAAGCGCGGAAGTTCG 60.500 61.111 8.83 0.00 0.00 3.95
4318 6488 3.793144 CGGAAGTTCGCAGCCAGC 61.793 66.667 0.00 0.00 40.87 4.85
4319 6489 3.435186 GGAAGTTCGCAGCCAGCC 61.435 66.667 0.00 0.00 41.38 4.85
4320 6490 3.435186 GAAGTTCGCAGCCAGCCC 61.435 66.667 0.00 0.00 41.38 5.19
4321 6491 4.269523 AAGTTCGCAGCCAGCCCA 62.270 61.111 0.00 0.00 41.38 5.36
4324 6494 3.318384 TTCGCAGCCAGCCCACTA 61.318 61.111 0.00 0.00 41.38 2.74
4325 6495 3.315142 TTCGCAGCCAGCCCACTAG 62.315 63.158 0.00 0.00 41.38 2.57
4326 6496 4.087892 CGCAGCCAGCCCACTAGT 62.088 66.667 0.00 0.00 41.38 2.57
4327 6497 2.124942 GCAGCCAGCCCACTAGTC 60.125 66.667 0.00 0.00 37.23 2.59
4328 6498 2.664081 GCAGCCAGCCCACTAGTCT 61.664 63.158 0.00 0.00 37.23 3.24
4329 6499 1.330655 GCAGCCAGCCCACTAGTCTA 61.331 60.000 0.00 0.00 37.23 2.59
4330 6500 0.749649 CAGCCAGCCCACTAGTCTAG 59.250 60.000 5.27 5.27 0.00 2.43
4331 6501 1.045911 AGCCAGCCCACTAGTCTAGC 61.046 60.000 6.81 0.00 0.00 3.42
4332 6502 2.034048 GCCAGCCCACTAGTCTAGCC 62.034 65.000 6.81 0.00 0.00 3.93
4333 6503 1.403687 CCAGCCCACTAGTCTAGCCC 61.404 65.000 6.81 0.00 0.00 5.19
4334 6504 0.687757 CAGCCCACTAGTCTAGCCCA 60.688 60.000 6.81 0.00 0.00 5.36
4335 6505 0.397816 AGCCCACTAGTCTAGCCCAG 60.398 60.000 6.81 0.00 0.00 4.45
4336 6506 1.403687 GCCCACTAGTCTAGCCCAGG 61.404 65.000 6.81 4.13 0.00 4.45
4337 6507 0.032017 CCCACTAGTCTAGCCCAGGT 60.032 60.000 6.81 0.00 0.00 4.00
4338 6508 1.622725 CCCACTAGTCTAGCCCAGGTT 60.623 57.143 6.81 0.00 0.00 3.50
4339 6509 1.482593 CCACTAGTCTAGCCCAGGTTG 59.517 57.143 6.81 0.00 0.00 3.77
4340 6510 1.482593 CACTAGTCTAGCCCAGGTTGG 59.517 57.143 6.81 0.00 37.25 3.77
4341 6511 1.078989 ACTAGTCTAGCCCAGGTTGGT 59.921 52.381 6.81 0.00 35.17 3.67
4342 6512 1.757699 CTAGTCTAGCCCAGGTTGGTC 59.242 57.143 0.00 0.00 35.17 4.02
4343 6513 0.117340 AGTCTAGCCCAGGTTGGTCT 59.883 55.000 0.00 0.00 35.17 3.85
4344 6514 0.537653 GTCTAGCCCAGGTTGGTCTC 59.462 60.000 0.00 0.00 35.17 3.36
4345 6515 0.970937 TCTAGCCCAGGTTGGTCTCG 60.971 60.000 0.00 0.00 35.17 4.04
4346 6516 1.229082 TAGCCCAGGTTGGTCTCGT 60.229 57.895 0.00 0.00 35.17 4.18
4347 6517 0.834687 TAGCCCAGGTTGGTCTCGTT 60.835 55.000 0.00 0.00 35.17 3.85
4348 6518 0.834687 AGCCCAGGTTGGTCTCGTTA 60.835 55.000 0.00 0.00 35.17 3.18
4349 6519 0.035739 GCCCAGGTTGGTCTCGTTAA 59.964 55.000 0.00 0.00 35.17 2.01
4350 6520 1.543871 GCCCAGGTTGGTCTCGTTAAA 60.544 52.381 0.00 0.00 35.17 1.52
4351 6521 2.423577 CCCAGGTTGGTCTCGTTAAAG 58.576 52.381 0.00 0.00 35.17 1.85
4352 6522 2.038033 CCCAGGTTGGTCTCGTTAAAGA 59.962 50.000 0.00 0.00 35.17 2.52
4353 6523 3.326747 CCAGGTTGGTCTCGTTAAAGAG 58.673 50.000 11.71 11.71 39.52 2.85
4354 6524 3.006537 CCAGGTTGGTCTCGTTAAAGAGA 59.993 47.826 15.95 15.95 44.23 3.10
4364 6534 5.940595 TCTCGTTAAAGAGAACTGAGTAGC 58.059 41.667 17.32 0.00 43.56 3.58
4365 6535 5.706369 TCTCGTTAAAGAGAACTGAGTAGCT 59.294 40.000 17.32 0.00 43.56 3.32
4366 6536 5.940595 TCGTTAAAGAGAACTGAGTAGCTC 58.059 41.667 7.15 7.15 0.00 4.09
4367 6537 5.472478 TCGTTAAAGAGAACTGAGTAGCTCA 59.528 40.000 14.99 0.00 38.25 4.26
4385 6555 3.747976 GTTGGCAAGGCGCGGAAT 61.748 61.111 8.83 0.00 43.84 3.01
4388 6558 2.202610 GGCAAGGCGCGGAATTTC 60.203 61.111 8.83 0.00 43.84 2.17
4405 6575 4.641645 CGCAGCCAACCCACCAGA 62.642 66.667 0.00 0.00 0.00 3.86
4431 6601 0.944311 GTCTCGGCTTGAGCGTTTGA 60.944 55.000 0.00 0.00 44.86 2.69
4440 6610 3.566261 AGCGTTTGATGCTCACGG 58.434 55.556 0.00 0.00 34.99 4.94
4443 6613 3.631249 AGCGTTTGATGCTCACGGAGT 62.631 52.381 3.38 0.00 34.99 3.85
4444 6614 0.716108 CGTTTGATGCTCACGGAGTC 59.284 55.000 3.38 0.00 41.61 3.36
4458 6628 6.474102 GCTCACGGAGTCTTCTTCTATAAAAG 59.526 42.308 3.38 0.00 41.61 2.27
4460 6630 8.118976 TCACGGAGTCTTCTTCTATAAAAGAA 57.881 34.615 1.41 1.41 41.61 2.52
4461 6631 8.750298 TCACGGAGTCTTCTTCTATAAAAGAAT 58.250 33.333 1.74 0.00 41.00 2.40
4464 6634 9.465985 CGGAGTCTTCTTCTATAAAAGAATACC 57.534 37.037 11.47 7.78 43.32 2.73
4470 6640 8.726870 TTCTTCTATAAAAGAATACCAACGGG 57.273 34.615 0.00 0.00 43.32 5.28
4471 6641 6.764560 TCTTCTATAAAAGAATACCAACGGGC 59.235 38.462 0.00 0.00 43.32 6.13
4472 6642 6.243216 TCTATAAAAGAATACCAACGGGCT 57.757 37.500 0.00 0.00 37.90 5.19
4473 6643 7.364149 TCTATAAAAGAATACCAACGGGCTA 57.636 36.000 0.00 0.00 37.90 3.93
4474 6644 7.439381 TCTATAAAAGAATACCAACGGGCTAG 58.561 38.462 0.00 0.00 37.90 3.42
4476 6646 3.538634 AAGAATACCAACGGGCTAGTC 57.461 47.619 0.00 0.00 37.90 2.59
4477 6647 2.463752 AGAATACCAACGGGCTAGTCA 58.536 47.619 0.00 0.00 37.90 3.41
4478 6648 2.167900 AGAATACCAACGGGCTAGTCAC 59.832 50.000 0.00 0.00 37.90 3.67
4479 6649 1.563924 ATACCAACGGGCTAGTCACA 58.436 50.000 0.00 0.00 37.90 3.58
4481 6651 1.375523 CCAACGGGCTAGTCACACC 60.376 63.158 0.00 0.00 0.00 4.16
4482 6652 1.369692 CAACGGGCTAGTCACACCA 59.630 57.895 0.00 0.00 0.00 4.17
4483 6653 0.949105 CAACGGGCTAGTCACACCAC 60.949 60.000 0.00 0.00 0.00 4.16
4484 6654 1.119574 AACGGGCTAGTCACACCACT 61.120 55.000 0.00 0.00 0.00 4.00
4485 6655 1.079819 CGGGCTAGTCACACCACTG 60.080 63.158 0.00 0.00 0.00 3.66
4486 6656 1.532604 CGGGCTAGTCACACCACTGA 61.533 60.000 0.00 0.00 0.00 3.41
4487 6657 0.905357 GGGCTAGTCACACCACTGAT 59.095 55.000 0.00 0.00 0.00 2.90
4488 6658 1.406069 GGGCTAGTCACACCACTGATG 60.406 57.143 0.00 0.00 0.00 3.07
4489 6659 1.363744 GCTAGTCACACCACTGATGC 58.636 55.000 0.00 0.00 0.00 3.91
4490 6660 1.633561 CTAGTCACACCACTGATGCG 58.366 55.000 0.00 0.00 0.00 4.73
4491 6661 1.202348 CTAGTCACACCACTGATGCGA 59.798 52.381 0.00 0.00 0.00 5.10
4492 6662 0.037882 AGTCACACCACTGATGCGAG 60.038 55.000 0.00 0.00 0.00 5.03
4493 6663 0.319900 GTCACACCACTGATGCGAGT 60.320 55.000 0.00 0.00 0.00 4.18
4495 6665 0.319813 CACACCACTGATGCGAGTCA 60.320 55.000 0.00 0.00 0.00 3.41
4500 6670 3.791539 CTGATGCGAGTCAGCCAC 58.208 61.111 4.82 0.95 39.19 5.01
4501 6671 1.079612 CTGATGCGAGTCAGCCACA 60.080 57.895 4.82 4.58 39.19 4.17
4502 6672 1.079612 TGATGCGAGTCAGCCACAG 60.080 57.895 4.84 0.00 36.02 3.66
4503 6673 2.435586 ATGCGAGTCAGCCACAGC 60.436 61.111 4.84 0.00 40.32 4.40
4506 6676 4.731612 CGAGTCAGCCACAGCGCT 62.732 66.667 2.64 2.64 46.67 5.92
4512 6682 3.763356 AGCCACAGCGCTGATCGA 61.763 61.111 42.03 0.00 46.67 3.59
4513 6683 2.587194 GCCACAGCGCTGATCGAT 60.587 61.111 42.03 18.41 41.67 3.59
4519 6689 2.896408 AGCGCTGATCGATGTGATG 58.104 52.632 10.39 0.00 41.67 3.07
4520 6690 0.599466 AGCGCTGATCGATGTGATGG 60.599 55.000 10.39 0.00 41.67 3.51
4522 6692 1.858041 GCTGATCGATGTGATGGCG 59.142 57.895 0.54 0.00 37.47 5.69
4523 6693 0.598419 GCTGATCGATGTGATGGCGA 60.598 55.000 0.54 0.00 37.47 5.54
4524 6694 1.135046 CTGATCGATGTGATGGCGAC 58.865 55.000 0.54 0.00 37.47 5.19
4525 6695 0.249447 TGATCGATGTGATGGCGACC 60.249 55.000 0.54 0.00 37.47 4.79
4526 6696 0.032678 GATCGATGTGATGGCGACCT 59.967 55.000 0.54 0.00 37.47 3.85
4527 6697 0.249615 ATCGATGTGATGGCGACCTG 60.250 55.000 0.00 0.00 36.83 4.00
4528 6698 1.884464 CGATGTGATGGCGACCTGG 60.884 63.158 0.00 0.00 0.00 4.45
4529 6699 2.124570 ATGTGATGGCGACCTGGC 60.125 61.111 0.00 0.00 45.12 4.85
4536 6706 2.590007 GGCGACCTGGCAGCATAG 60.590 66.667 9.56 0.72 44.08 2.23
4537 6707 2.590007 GCGACCTGGCAGCATAGG 60.590 66.667 9.56 12.25 40.01 2.57
4538 6708 2.590007 CGACCTGGCAGCATAGGC 60.590 66.667 9.56 0.00 37.61 3.93
4548 6718 3.207669 GCATAGGCGCTGCTTGCT 61.208 61.111 12.41 0.00 40.11 3.91
4549 6719 2.768492 GCATAGGCGCTGCTTGCTT 61.768 57.895 12.41 0.00 40.11 3.91
4550 6720 1.354506 CATAGGCGCTGCTTGCTTC 59.645 57.895 7.64 0.00 40.11 3.86
4551 6721 1.078214 ATAGGCGCTGCTTGCTTCA 60.078 52.632 7.64 0.00 40.11 3.02
4552 6722 1.372087 ATAGGCGCTGCTTGCTTCAC 61.372 55.000 7.64 0.00 40.11 3.18
4553 6723 2.454832 TAGGCGCTGCTTGCTTCACT 62.455 55.000 7.64 0.00 40.11 3.41
4554 6724 2.126965 GCGCTGCTTGCTTCACTG 60.127 61.111 0.00 0.00 40.11 3.66
4555 6725 2.610694 GCGCTGCTTGCTTCACTGA 61.611 57.895 0.00 0.00 40.11 3.41
4556 6726 1.944035 CGCTGCTTGCTTCACTGAA 59.056 52.632 0.00 0.00 40.11 3.02
4557 6727 0.110328 CGCTGCTTGCTTCACTGAAG 60.110 55.000 13.68 13.68 42.03 3.02
4558 6728 1.233019 GCTGCTTGCTTCACTGAAGA 58.767 50.000 20.98 5.17 41.71 2.87
4559 6729 1.197264 GCTGCTTGCTTCACTGAAGAG 59.803 52.381 20.98 11.86 41.71 2.85
4560 6730 2.763933 CTGCTTGCTTCACTGAAGAGA 58.236 47.619 20.98 8.28 41.71 3.10
4561 6731 3.136763 CTGCTTGCTTCACTGAAGAGAA 58.863 45.455 20.98 11.73 41.71 2.87
4562 6732 2.874701 TGCTTGCTTCACTGAAGAGAAC 59.125 45.455 20.98 8.63 41.71 3.01
4563 6733 2.096516 GCTTGCTTCACTGAAGAGAACG 60.097 50.000 20.98 6.00 41.71 3.95
4564 6734 2.890808 TGCTTCACTGAAGAGAACGT 57.109 45.000 20.98 0.00 41.71 3.99
4565 6735 3.179443 TGCTTCACTGAAGAGAACGTT 57.821 42.857 20.98 0.00 41.71 3.99
4566 6736 2.866156 TGCTTCACTGAAGAGAACGTTG 59.134 45.455 20.98 0.00 41.71 4.10
4567 6737 2.348966 GCTTCACTGAAGAGAACGTTGC 60.349 50.000 20.98 0.00 41.71 4.17
4568 6738 2.595124 TCACTGAAGAGAACGTTGCA 57.405 45.000 5.00 0.00 0.00 4.08
4569 6739 2.473816 TCACTGAAGAGAACGTTGCAG 58.526 47.619 5.00 7.75 0.00 4.41
4570 6740 1.070309 CACTGAAGAGAACGTTGCAGC 60.070 52.381 5.00 0.00 0.00 5.25
4571 6741 0.514691 CTGAAGAGAACGTTGCAGCC 59.485 55.000 5.00 0.00 0.00 4.85
4572 6742 0.884704 TGAAGAGAACGTTGCAGCCC 60.885 55.000 5.00 0.00 0.00 5.19
4573 6743 0.603975 GAAGAGAACGTTGCAGCCCT 60.604 55.000 5.00 0.00 0.00 5.19
4574 6744 0.886490 AAGAGAACGTTGCAGCCCTG 60.886 55.000 5.00 0.00 0.00 4.45
4575 6745 1.301716 GAGAACGTTGCAGCCCTGA 60.302 57.895 5.00 0.00 0.00 3.86
4576 6746 0.674895 GAGAACGTTGCAGCCCTGAT 60.675 55.000 5.00 0.00 0.00 2.90
4577 6747 0.250901 AGAACGTTGCAGCCCTGATT 60.251 50.000 5.00 0.00 0.00 2.57
4622 6792 2.680841 AGCAGAGTACTAGCAGAGAACG 59.319 50.000 18.71 0.00 0.00 3.95
4705 6875 2.602660 CGTCCAAGCCTGTTTGTTTTTG 59.397 45.455 0.00 0.00 0.00 2.44
4759 6929 5.643379 TTTCTGATGTAATCCTTTGGTGC 57.357 39.130 0.00 0.00 44.73 5.01
4810 6980 4.462508 TTTGTTTGATTCTGTGGTTGCA 57.537 36.364 0.00 0.00 0.00 4.08
4870 7040 5.104859 TGCCATGATCAGGTTTATGCAAATT 60.105 36.000 6.62 0.00 0.00 1.82
4929 7099 1.202639 TGGCAATCAGACTCACAACGT 60.203 47.619 0.00 0.00 0.00 3.99
4936 7106 2.167693 TCAGACTCACAACGTCCAAACT 59.832 45.455 0.00 0.00 31.83 2.66
4994 7164 7.360101 CGACTTCTCCGTAACAATTTGAAGATT 60.360 37.037 2.79 0.00 35.05 2.40
5024 7194 1.156736 GCAAGTAGCGGCAAGAAAGA 58.843 50.000 1.45 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.225293 ACCTCACTACTTAGACCCTGCA 60.225 50.000 0.00 0.00 0.00 4.41
88 89 3.914426 AGGTCTCGGTAAATTCTGCAT 57.086 42.857 0.00 0.00 0.00 3.96
144 145 5.106078 GCGGACATGAATTAAGGGTAAAACA 60.106 40.000 0.00 0.00 0.00 2.83
235 239 1.561542 CAGGGAGGCTTACAACCAGAT 59.438 52.381 0.00 0.00 0.00 2.90
252 256 2.200370 ATGCCCATGCCATCCAGG 59.800 61.111 0.00 0.00 41.84 4.45
299 308 7.342026 ACCATTCCAAACTGAACTAAGACTTTT 59.658 33.333 0.00 0.00 0.00 2.27
328 339 2.758423 GGCCTAAAACCATCAAACCGAT 59.242 45.455 0.00 0.00 33.27 4.18
373 387 0.597377 GCCTTTCCAACAACCAAGCG 60.597 55.000 0.00 0.00 0.00 4.68
411 425 3.073678 CACTTGACATGGGATCACGAAA 58.926 45.455 0.00 0.00 0.00 3.46
466 484 0.684805 AGCAGAGGAGGGAGGTAACG 60.685 60.000 0.00 0.00 46.39 3.18
475 510 0.540454 TGATTCAGCAGCAGAGGAGG 59.460 55.000 0.00 0.00 0.00 4.30
479 514 5.511571 CATGTTATTGATTCAGCAGCAGAG 58.488 41.667 0.00 0.00 0.00 3.35
480 515 4.201980 GCATGTTATTGATTCAGCAGCAGA 60.202 41.667 0.00 0.00 0.00 4.26
482 517 3.444388 TGCATGTTATTGATTCAGCAGCA 59.556 39.130 0.00 0.00 0.00 4.41
496 531 1.561076 ACCAGGCTCAGATGCATGTTA 59.439 47.619 2.46 0.00 42.34 2.41
533 568 7.386299 GCATCCAAGACTATAGACAAACATAGG 59.614 40.741 6.78 0.00 0.00 2.57
565 608 4.728110 AGCGCTGAGGCCATGCAA 62.728 61.111 10.39 0.00 34.44 4.08
578 621 4.410743 GCCAGGAAGCAACAGCGC 62.411 66.667 0.00 0.00 0.00 5.92
649 692 2.457366 AAACTGGGCAGAGACTAACG 57.543 50.000 0.00 0.00 0.00 3.18
650 693 2.226674 GCAAAACTGGGCAGAGACTAAC 59.773 50.000 0.00 0.00 0.00 2.34
653 696 0.538287 GGCAAAACTGGGCAGAGACT 60.538 55.000 0.00 0.00 0.00 3.24
654 697 1.856265 CGGCAAAACTGGGCAGAGAC 61.856 60.000 0.00 0.00 0.00 3.36
655 698 1.600636 CGGCAAAACTGGGCAGAGA 60.601 57.895 0.00 0.00 0.00 3.10
656 699 1.455383 AACGGCAAAACTGGGCAGAG 61.455 55.000 0.00 0.00 0.00 3.35
657 700 1.452145 GAACGGCAAAACTGGGCAGA 61.452 55.000 0.00 0.00 0.00 4.26
660 703 1.007387 CTGAACGGCAAAACTGGGC 60.007 57.895 0.00 0.00 0.00 5.36
661 704 1.200020 GATCTGAACGGCAAAACTGGG 59.800 52.381 0.00 0.00 0.00 4.45
665 711 3.896648 TTCTGATCTGAACGGCAAAAC 57.103 42.857 10.68 0.00 0.00 2.43
666 712 3.191162 CCATTCTGATCTGAACGGCAAAA 59.809 43.478 16.26 0.00 0.00 2.44
670 716 2.029838 ACCATTCTGATCTGAACGGC 57.970 50.000 22.67 0.00 33.09 5.68
671 717 5.376854 AAAAACCATTCTGATCTGAACGG 57.623 39.130 21.55 21.55 35.64 4.44
676 722 9.947669 GATTGAGATAAAAACCATTCTGATCTG 57.052 33.333 0.00 0.00 0.00 2.90
683 729 7.699812 GCAGACAGATTGAGATAAAAACCATTC 59.300 37.037 0.00 0.00 0.00 2.67
688 734 6.408858 TCGCAGACAGATTGAGATAAAAAC 57.591 37.500 0.00 0.00 0.00 2.43
705 752 3.500680 GGTAAAACAGTCCAAATCGCAGA 59.499 43.478 0.00 0.00 45.75 4.26
706 753 3.252215 TGGTAAAACAGTCCAAATCGCAG 59.748 43.478 0.00 0.00 0.00 5.18
707 754 3.003897 GTGGTAAAACAGTCCAAATCGCA 59.996 43.478 0.00 0.00 32.82 5.10
708 755 3.252458 AGTGGTAAAACAGTCCAAATCGC 59.748 43.478 0.00 0.00 32.82 4.58
709 756 5.929992 TCTAGTGGTAAAACAGTCCAAATCG 59.070 40.000 0.00 0.00 32.82 3.34
710 757 7.739498 TTCTAGTGGTAAAACAGTCCAAATC 57.261 36.000 0.00 0.00 32.82 2.17
711 758 7.255486 GCTTTCTAGTGGTAAAACAGTCCAAAT 60.255 37.037 0.00 0.00 32.82 2.32
712 759 6.038936 GCTTTCTAGTGGTAAAACAGTCCAAA 59.961 38.462 0.00 0.00 32.82 3.28
713 760 5.529800 GCTTTCTAGTGGTAAAACAGTCCAA 59.470 40.000 0.00 0.00 32.82 3.53
714 761 5.061179 GCTTTCTAGTGGTAAAACAGTCCA 58.939 41.667 0.00 0.00 0.00 4.02
715 762 5.061179 TGCTTTCTAGTGGTAAAACAGTCC 58.939 41.667 0.00 0.00 0.00 3.85
716 763 6.482308 TCTTGCTTTCTAGTGGTAAAACAGTC 59.518 38.462 0.00 0.00 0.00 3.51
717 764 6.354130 TCTTGCTTTCTAGTGGTAAAACAGT 58.646 36.000 0.00 0.00 0.00 3.55
718 765 6.861065 TCTTGCTTTCTAGTGGTAAAACAG 57.139 37.500 0.00 0.00 0.00 3.16
731 778 5.128919 ACACTTCACAGATTCTTGCTTTCT 58.871 37.500 0.00 0.00 0.00 2.52
735 782 4.712476 AGAACACTTCACAGATTCTTGCT 58.288 39.130 0.00 0.00 29.74 3.91
773 820 1.361668 CTCACCGGGCAAAGATCGTG 61.362 60.000 6.32 0.00 0.00 4.35
774 821 1.079127 CTCACCGGGCAAAGATCGT 60.079 57.895 6.32 0.00 0.00 3.73
775 822 1.815421 CCTCACCGGGCAAAGATCG 60.815 63.158 6.32 0.00 0.00 3.69
776 823 4.225497 CCTCACCGGGCAAAGATC 57.775 61.111 6.32 0.00 0.00 2.75
787 848 2.680352 TGACGGCTCTCCCTCACC 60.680 66.667 0.00 0.00 0.00 4.02
868 929 2.433145 ATCAGTGGCGCGTCAGTG 60.433 61.111 36.36 36.36 38.93 3.66
869 930 2.125912 GATCAGTGGCGCGTCAGT 60.126 61.111 16.68 16.73 0.00 3.41
870 931 3.250323 CGATCAGTGGCGCGTCAG 61.250 66.667 16.68 2.79 0.00 3.51
876 937 2.163390 CAGTGAGCGATCAGTGGCG 61.163 63.158 26.94 5.33 37.39 5.69
877 938 0.179089 ATCAGTGAGCGATCAGTGGC 60.179 55.000 31.79 9.61 40.45 5.01
878 939 1.537776 GGATCAGTGAGCGATCAGTGG 60.538 57.143 31.79 17.18 40.93 4.00
1025 1113 3.632049 TGGGGGAGTGGGATGGGA 61.632 66.667 0.00 0.00 0.00 4.37
1065 1153 4.838152 CTCATCGTGGCGGGGTGG 62.838 72.222 0.00 0.00 0.00 4.61
1066 1154 3.723235 CTCTCATCGTGGCGGGGTG 62.723 68.421 0.00 0.00 0.00 4.61
1203 1294 1.134530 CGTAGAGCGCCGTCTTCTTG 61.135 60.000 2.29 0.00 0.00 3.02
1378 1469 3.424105 GAAGGGGATGGCCTGGCT 61.424 66.667 19.68 0.00 0.00 4.75
1476 1567 4.194720 GAGTCGTCGATGGCGCCT 62.195 66.667 29.70 13.55 37.46 5.52
1667 1758 2.830923 TGAAGAGAGCAGAGAAGGAAGG 59.169 50.000 0.00 0.00 0.00 3.46
1675 1771 4.812091 CCAATCAAGATGAAGAGAGCAGAG 59.188 45.833 0.00 0.00 0.00 3.35
1676 1772 4.224594 ACCAATCAAGATGAAGAGAGCAGA 59.775 41.667 0.00 0.00 0.00 4.26
1681 1777 7.226441 TCAGAAAACCAATCAAGATGAAGAGA 58.774 34.615 0.00 0.00 0.00 3.10
1714 1810 9.550406 CCATTGCAGAAATCAATAATTAACCAT 57.450 29.630 0.00 0.00 33.27 3.55
1716 1812 7.986889 ACCCATTGCAGAAATCAATAATTAACC 59.013 33.333 0.00 0.00 33.27 2.85
1718 1814 9.381033 CAACCCATTGCAGAAATCAATAATTAA 57.619 29.630 0.00 0.00 33.27 1.40
1720 1816 7.622713 TCAACCCATTGCAGAAATCAATAATT 58.377 30.769 0.00 0.00 35.63 1.40
1722 1818 6.602410 TCAACCCATTGCAGAAATCAATAA 57.398 33.333 0.00 0.00 35.63 1.40
1731 1831 3.091545 GGAATCTTCAACCCATTGCAGA 58.908 45.455 0.00 0.00 41.46 4.26
1788 1888 4.693283 TCCTCCAAATACTACAGCATTCG 58.307 43.478 0.00 0.00 0.00 3.34
1795 1895 5.128827 CCTTGTAGCTCCTCCAAATACTACA 59.871 44.000 0.00 0.00 38.48 2.74
1802 1902 1.742308 ACCCTTGTAGCTCCTCCAAA 58.258 50.000 0.00 0.00 0.00 3.28
1850 1950 4.586841 TGTACATTCCAAAACCTTTCCTGG 59.413 41.667 0.00 0.00 0.00 4.45
1881 1985 0.392706 TCGCCATGTGTCAACACTCT 59.607 50.000 13.94 0.00 46.55 3.24
1891 1995 1.016627 ATGAACCGAATCGCCATGTG 58.983 50.000 0.00 0.00 0.00 3.21
1896 2000 2.250188 CAAACAATGAACCGAATCGCC 58.750 47.619 0.00 0.00 0.00 5.54
2047 2158 7.767198 CACCATCAAAAGAAAATTCTGCCATAT 59.233 33.333 0.00 0.00 37.65 1.78
2105 2216 1.817357 TCTCACCAAGCAGCAAGATG 58.183 50.000 0.00 0.00 0.00 2.90
2277 2397 7.926018 ACCACTGGATTAAATCAAAGTGAAAAC 59.074 33.333 14.58 0.00 43.01 2.43
2278 2398 7.925483 CACCACTGGATTAAATCAAAGTGAAAA 59.075 33.333 14.58 0.00 43.01 2.29
2291 2411 4.385199 CCAATCTAGGCACCACTGGATTAA 60.385 45.833 0.71 0.00 43.89 1.40
2304 2424 2.615912 GCTGTCACAATCCAATCTAGGC 59.384 50.000 0.00 0.00 0.00 3.93
2333 2453 4.336713 GCAACTGCCTTTTCTATTAGGAGG 59.663 45.833 0.00 0.00 33.13 4.30
2389 2517 6.483640 GCTTTCATAATTTCATAGGACCTCGT 59.516 38.462 0.00 0.00 0.00 4.18
2418 2549 7.353414 TGAAACTTGAATTGGGTTGTTATGA 57.647 32.000 0.00 0.00 0.00 2.15
2456 2587 9.964303 ATTTTATGAATAGATGCGCAAACATTA 57.036 25.926 17.11 3.01 0.00 1.90
2513 2646 2.775384 ACTTCCCCCGCAATGTAGAATA 59.225 45.455 0.00 0.00 0.00 1.75
2520 2653 0.107017 AGATCACTTCCCCCGCAATG 60.107 55.000 0.00 0.00 0.00 2.82
2561 2698 4.217754 TCGACAAAACCACACAAATAGC 57.782 40.909 0.00 0.00 0.00 2.97
2617 2755 9.445878 ACATATGTAGGAGAAGCATATCAAATG 57.554 33.333 6.56 0.00 34.65 2.32
2626 2764 4.833380 GGGAGTACATATGTAGGAGAAGCA 59.167 45.833 15.93 0.00 0.00 3.91
2627 2765 5.081032 AGGGAGTACATATGTAGGAGAAGC 58.919 45.833 15.93 2.83 0.00 3.86
2644 3027 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2645 3028 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2646 3029 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2647 3030 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2648 3031 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2649 3032 4.673441 CGCTCTTATATTATGGGACGGAG 58.327 47.826 0.00 0.00 0.00 4.63
2650 3033 3.119245 GCGCTCTTATATTATGGGACGGA 60.119 47.826 0.00 0.00 0.00 4.69
2651 3034 3.119101 AGCGCTCTTATATTATGGGACGG 60.119 47.826 2.64 0.00 0.00 4.79
2652 3035 4.111375 AGCGCTCTTATATTATGGGACG 57.889 45.455 2.64 0.00 0.00 4.79
2653 3036 6.426937 TCAAAAGCGCTCTTATATTATGGGAC 59.573 38.462 12.06 0.00 31.02 4.46
2654 3037 6.426937 GTCAAAAGCGCTCTTATATTATGGGA 59.573 38.462 12.06 0.00 31.02 4.37
2655 3038 6.204688 TGTCAAAAGCGCTCTTATATTATGGG 59.795 38.462 12.06 0.00 31.02 4.00
2656 3039 7.041780 AGTGTCAAAAGCGCTCTTATATTATGG 60.042 37.037 12.06 0.00 31.02 2.74
2657 3040 7.855545 AGTGTCAAAAGCGCTCTTATATTATG 58.144 34.615 12.06 2.09 31.02 1.90
2658 3041 9.197694 CTAGTGTCAAAAGCGCTCTTATATTAT 57.802 33.333 12.06 0.00 31.02 1.28
2659 3042 8.195436 ACTAGTGTCAAAAGCGCTCTTATATTA 58.805 33.333 12.06 0.00 31.02 0.98
2660 3043 7.042335 ACTAGTGTCAAAAGCGCTCTTATATT 58.958 34.615 12.06 0.00 31.02 1.28
2661 3044 6.574350 ACTAGTGTCAAAAGCGCTCTTATAT 58.426 36.000 12.06 0.00 31.02 0.86
2662 3045 5.962433 ACTAGTGTCAAAAGCGCTCTTATA 58.038 37.500 12.06 0.00 31.02 0.98
2663 3046 4.822026 ACTAGTGTCAAAAGCGCTCTTAT 58.178 39.130 12.06 0.00 31.02 1.73
2664 3047 4.252971 ACTAGTGTCAAAAGCGCTCTTA 57.747 40.909 12.06 0.00 31.02 2.10
2665 3048 3.113260 ACTAGTGTCAAAAGCGCTCTT 57.887 42.857 12.06 0.00 0.00 2.85
2666 3049 2.821991 ACTAGTGTCAAAAGCGCTCT 57.178 45.000 12.06 3.67 0.00 4.09
2667 3050 3.365220 CACTACTAGTGTCAAAAGCGCTC 59.635 47.826 12.06 0.00 41.19 5.03
2668 3051 3.318017 CACTACTAGTGTCAAAAGCGCT 58.682 45.455 2.64 2.64 41.19 5.92
2669 3052 3.706994 CACTACTAGTGTCAAAAGCGC 57.293 47.619 5.39 0.00 41.19 5.92
2687 3070 9.607285 CCCATAATATAATAGCGTTTTTGACAC 57.393 33.333 0.00 0.00 0.00 3.67
2688 3071 9.562408 TCCCATAATATAATAGCGTTTTTGACA 57.438 29.630 0.00 0.00 0.00 3.58
2689 3072 9.821662 GTCCCATAATATAATAGCGTTTTTGAC 57.178 33.333 0.00 0.00 0.00 3.18
2690 3073 8.714179 CGTCCCATAATATAATAGCGTTTTTGA 58.286 33.333 0.00 0.00 0.00 2.69
2691 3074 7.960738 CCGTCCCATAATATAATAGCGTTTTTG 59.039 37.037 0.00 0.00 0.00 2.44
2692 3075 7.879160 TCCGTCCCATAATATAATAGCGTTTTT 59.121 33.333 0.00 0.00 0.00 1.94
2693 3076 7.388437 TCCGTCCCATAATATAATAGCGTTTT 58.612 34.615 0.00 0.00 0.00 2.43
2694 3077 6.938507 TCCGTCCCATAATATAATAGCGTTT 58.061 36.000 0.00 0.00 0.00 3.60
2695 3078 6.406624 CCTCCGTCCCATAATATAATAGCGTT 60.407 42.308 0.00 0.00 0.00 4.84
2696 3079 5.068723 CCTCCGTCCCATAATATAATAGCGT 59.931 44.000 0.00 0.00 0.00 5.07
2697 3080 5.509163 CCCTCCGTCCCATAATATAATAGCG 60.509 48.000 0.00 0.00 0.00 4.26
2698 3081 5.601313 TCCCTCCGTCCCATAATATAATAGC 59.399 44.000 0.00 0.00 0.00 2.97
2699 3082 6.239345 GCTCCCTCCGTCCCATAATATAATAG 60.239 46.154 0.00 0.00 0.00 1.73
2700 3083 5.601313 GCTCCCTCCGTCCCATAATATAATA 59.399 44.000 0.00 0.00 0.00 0.98
2701 3084 4.409247 GCTCCCTCCGTCCCATAATATAAT 59.591 45.833 0.00 0.00 0.00 1.28
2702 3085 3.773119 GCTCCCTCCGTCCCATAATATAA 59.227 47.826 0.00 0.00 0.00 0.98
2703 3086 3.245839 TGCTCCCTCCGTCCCATAATATA 60.246 47.826 0.00 0.00 0.00 0.86
2704 3087 2.188817 GCTCCCTCCGTCCCATAATAT 58.811 52.381 0.00 0.00 0.00 1.28
2705 3088 1.132977 TGCTCCCTCCGTCCCATAATA 60.133 52.381 0.00 0.00 0.00 0.98
2706 3089 0.399949 TGCTCCCTCCGTCCCATAAT 60.400 55.000 0.00 0.00 0.00 1.28
2707 3090 1.002403 TGCTCCCTCCGTCCCATAA 59.998 57.895 0.00 0.00 0.00 1.90
2708 3091 1.760875 GTGCTCCCTCCGTCCCATA 60.761 63.158 0.00 0.00 0.00 2.74
2709 3092 2.238319 TAGTGCTCCCTCCGTCCCAT 62.238 60.000 0.00 0.00 0.00 4.00
2710 3093 2.238319 ATAGTGCTCCCTCCGTCCCA 62.238 60.000 0.00 0.00 0.00 4.37
2711 3094 1.049289 AATAGTGCTCCCTCCGTCCC 61.049 60.000 0.00 0.00 0.00 4.46
2712 3095 0.831307 AAATAGTGCTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
2713 3096 1.202545 GGAAATAGTGCTCCCTCCGTC 60.203 57.143 0.00 0.00 0.00 4.79
2714 3097 0.831307 GGAAATAGTGCTCCCTCCGT 59.169 55.000 0.00 0.00 0.00 4.69
2715 3098 0.106894 GGGAAATAGTGCTCCCTCCG 59.893 60.000 0.00 0.00 46.91 4.63
2719 3102 2.640316 ATTCGGGAAATAGTGCTCCC 57.360 50.000 0.00 0.00 46.97 4.30
2720 3103 4.879545 TGTAAATTCGGGAAATAGTGCTCC 59.120 41.667 0.00 0.00 0.00 4.70
2721 3104 5.007724 CCTGTAAATTCGGGAAATAGTGCTC 59.992 44.000 0.00 0.00 36.02 4.26
2722 3105 4.881850 CCTGTAAATTCGGGAAATAGTGCT 59.118 41.667 0.00 0.00 36.02 4.40
2723 3106 4.879545 TCCTGTAAATTCGGGAAATAGTGC 59.120 41.667 0.00 0.00 39.60 4.40
2724 3107 6.995511 TTCCTGTAAATTCGGGAAATAGTG 57.004 37.500 5.21 0.00 46.11 2.74
2752 3135 5.063204 TGTCAAGGAACAGAGTTACAATGG 58.937 41.667 0.00 0.00 0.00 3.16
2872 3255 0.107993 TGAGGAAGCAAGCAGATCCG 60.108 55.000 0.00 0.00 37.05 4.18
2970 3357 9.535878 GGTATTAAAGAAAGGAGTAGAGTCATG 57.464 37.037 0.00 0.00 0.00 3.07
2979 3366 6.697641 TGTCCTGGTATTAAAGAAAGGAGT 57.302 37.500 0.00 0.00 34.57 3.85
3045 3432 6.381481 TGAATTATGATGGACAAGTGATGC 57.619 37.500 0.00 0.00 0.00 3.91
3111 3499 5.399038 CCAAATAACATCCCATAGACCCACT 60.399 44.000 0.00 0.00 0.00 4.00
3198 3587 3.686916 AGGACTGGTGTAAGAAGCTTC 57.313 47.619 19.11 19.11 0.00 3.86
3320 3712 1.874019 CGCGTTCTCAGATGGGACG 60.874 63.158 0.00 0.00 0.00 4.79
3329 3721 0.456142 CGAGATCAACCGCGTTCTCA 60.456 55.000 4.92 0.00 35.43 3.27
3341 3733 1.221840 GAGGGCCTTTGCGAGATCA 59.778 57.895 7.89 0.00 38.85 2.92
3425 3817 1.298014 GTACAAGCAGAGGCCAGCT 59.702 57.895 5.01 8.77 44.31 4.24
3438 3830 0.033642 TCCATGTCGTTGCCGTACAA 59.966 50.000 0.00 0.00 35.33 2.41
3644 4036 3.447025 CTCGCCGATGTTCTCCCCC 62.447 68.421 0.00 0.00 0.00 5.40
3746 4138 0.666577 GGACGACCACCTTGAACTCG 60.667 60.000 0.00 0.00 35.97 4.18
3869 4265 3.119708 GCGAGAGAAAATTTGCAGTCCAT 60.120 43.478 0.00 0.00 0.00 3.41
3960 4361 4.102367 AGGATAGAGGAGAAATGTCAAGCC 59.898 45.833 0.00 0.00 0.00 4.35
4094 4503 7.040823 CCTTTATAAGATGACATCTCAAAGGGC 60.041 40.741 31.37 7.28 42.18 5.19
4160 5675 7.533083 ACCCCTAGATAATACAGTACTAGCAA 58.467 38.462 0.00 0.00 32.07 3.91
4288 6458 2.904866 TTCCGCGCTTTGCCAACT 60.905 55.556 5.56 0.00 42.08 3.16
4289 6459 2.429069 CTTCCGCGCTTTGCCAAC 60.429 61.111 5.56 0.00 42.08 3.77
4290 6460 2.400896 GAACTTCCGCGCTTTGCCAA 62.401 55.000 5.56 0.00 42.08 4.52
4291 6461 2.903547 GAACTTCCGCGCTTTGCCA 61.904 57.895 5.56 0.00 42.08 4.92
4292 6462 2.126850 GAACTTCCGCGCTTTGCC 60.127 61.111 5.56 0.00 42.08 4.52
4293 6463 2.499732 CGAACTTCCGCGCTTTGC 60.500 61.111 5.56 0.00 41.47 3.68
4301 6471 3.793144 GCTGGCTGCGAACTTCCG 61.793 66.667 0.00 0.00 0.00 4.30
4302 6472 3.435186 GGCTGGCTGCGAACTTCC 61.435 66.667 10.35 0.00 44.05 3.46
4303 6473 3.435186 GGGCTGGCTGCGAACTTC 61.435 66.667 10.35 0.00 44.05 3.01
4304 6474 4.269523 TGGGCTGGCTGCGAACTT 62.270 61.111 10.35 0.00 44.05 2.66
4306 6476 3.605749 TAGTGGGCTGGCTGCGAAC 62.606 63.158 10.35 10.54 44.05 3.95
4307 6477 3.315142 CTAGTGGGCTGGCTGCGAA 62.315 63.158 10.35 0.00 44.05 4.70
4308 6478 3.774528 CTAGTGGGCTGGCTGCGA 61.775 66.667 10.35 0.00 44.05 5.10
4309 6479 4.087892 ACTAGTGGGCTGGCTGCG 62.088 66.667 10.35 0.00 44.05 5.18
4310 6480 1.330655 TAGACTAGTGGGCTGGCTGC 61.331 60.000 0.00 7.96 41.94 5.25
4311 6481 0.749649 CTAGACTAGTGGGCTGGCTG 59.250 60.000 0.00 0.00 33.70 4.85
4312 6482 3.215671 CTAGACTAGTGGGCTGGCT 57.784 57.895 0.00 0.00 33.70 4.75
4314 6484 1.403687 GGGCTAGACTAGTGGGCTGG 61.404 65.000 11.15 0.00 33.70 4.85
4315 6485 0.687757 TGGGCTAGACTAGTGGGCTG 60.688 60.000 11.15 0.00 33.70 4.85
4316 6486 0.397816 CTGGGCTAGACTAGTGGGCT 60.398 60.000 11.15 0.00 37.00 5.19
4317 6487 1.403687 CCTGGGCTAGACTAGTGGGC 61.404 65.000 8.33 2.51 0.00 5.36
4318 6488 0.032017 ACCTGGGCTAGACTAGTGGG 60.032 60.000 8.33 9.96 0.00 4.61
4319 6489 1.482593 CAACCTGGGCTAGACTAGTGG 59.517 57.143 8.33 10.29 0.00 4.00
4320 6490 1.482593 CCAACCTGGGCTAGACTAGTG 59.517 57.143 8.33 0.32 32.67 2.74
4321 6491 1.078989 ACCAACCTGGGCTAGACTAGT 59.921 52.381 8.33 0.00 43.37 2.57
4322 6492 1.757699 GACCAACCTGGGCTAGACTAG 59.242 57.143 0.96 0.96 44.12 2.57
4323 6493 1.861982 GACCAACCTGGGCTAGACTA 58.138 55.000 0.00 0.00 44.12 2.59
4324 6494 2.685202 GACCAACCTGGGCTAGACT 58.315 57.895 0.00 0.00 44.12 3.24
4331 6501 2.038033 TCTTTAACGAGACCAACCTGGG 59.962 50.000 0.00 0.00 43.37 4.45
4332 6502 3.006537 TCTCTTTAACGAGACCAACCTGG 59.993 47.826 7.54 0.00 45.02 4.45
4333 6503 4.252971 TCTCTTTAACGAGACCAACCTG 57.747 45.455 7.54 0.00 35.23 4.00
4334 6504 4.344390 AGTTCTCTTTAACGAGACCAACCT 59.656 41.667 10.96 1.18 39.62 3.50
4335 6505 4.448060 CAGTTCTCTTTAACGAGACCAACC 59.552 45.833 10.96 0.00 39.62 3.77
4336 6506 5.287226 TCAGTTCTCTTTAACGAGACCAAC 58.713 41.667 10.96 7.50 39.62 3.77
4337 6507 5.068723 ACTCAGTTCTCTTTAACGAGACCAA 59.931 40.000 10.96 0.00 39.62 3.67
4338 6508 4.583489 ACTCAGTTCTCTTTAACGAGACCA 59.417 41.667 10.96 0.00 39.62 4.02
4339 6509 5.123805 ACTCAGTTCTCTTTAACGAGACC 57.876 43.478 10.96 4.88 39.62 3.85
4340 6510 5.796437 GCTACTCAGTTCTCTTTAACGAGAC 59.204 44.000 10.96 7.16 39.62 3.36
4341 6511 5.706369 AGCTACTCAGTTCTCTTTAACGAGA 59.294 40.000 7.54 7.54 38.23 4.04
4342 6512 5.945155 AGCTACTCAGTTCTCTTTAACGAG 58.055 41.667 2.59 2.59 36.72 4.18
4343 6513 5.472478 TGAGCTACTCAGTTCTCTTTAACGA 59.528 40.000 7.90 0.00 35.39 3.85
4344 6514 5.700846 TGAGCTACTCAGTTCTCTTTAACG 58.299 41.667 7.90 0.00 35.39 3.18
4357 6527 1.002430 CCTTGCCAACTGAGCTACTCA 59.998 52.381 0.00 0.00 38.25 3.41
4358 6528 1.731720 CCTTGCCAACTGAGCTACTC 58.268 55.000 0.00 0.00 0.00 2.59
4359 6529 0.322008 GCCTTGCCAACTGAGCTACT 60.322 55.000 0.00 0.00 0.00 2.57
4360 6530 1.639298 CGCCTTGCCAACTGAGCTAC 61.639 60.000 0.00 0.00 0.00 3.58
4361 6531 1.375908 CGCCTTGCCAACTGAGCTA 60.376 57.895 0.00 0.00 0.00 3.32
4362 6532 2.670934 CGCCTTGCCAACTGAGCT 60.671 61.111 0.00 0.00 0.00 4.09
4363 6533 4.410743 GCGCCTTGCCAACTGAGC 62.411 66.667 0.00 0.00 37.76 4.26
4364 6534 4.093952 CGCGCCTTGCCAACTGAG 62.094 66.667 0.00 0.00 42.08 3.35
4367 6537 4.947147 TTCCGCGCCTTGCCAACT 62.947 61.111 0.00 0.00 42.08 3.16
4368 6538 2.763627 AAATTCCGCGCCTTGCCAAC 62.764 55.000 0.00 0.00 42.08 3.77
4369 6539 2.485188 GAAATTCCGCGCCTTGCCAA 62.485 55.000 0.00 0.00 42.08 4.52
4370 6540 2.988684 AAATTCCGCGCCTTGCCA 60.989 55.556 0.00 0.00 42.08 4.92
4385 6555 2.909965 GGTGGGTTGGCTGCGAAA 60.910 61.111 0.00 0.00 0.00 3.46
4388 6558 4.641645 TCTGGTGGGTTGGCTGCG 62.642 66.667 0.00 0.00 0.00 5.18
4396 6566 1.694696 GAGACTTGAACTCTGGTGGGT 59.305 52.381 0.00 0.00 0.00 4.51
4431 6601 2.175202 AGAAGAAGACTCCGTGAGCAT 58.825 47.619 1.36 0.00 32.04 3.79
4443 6613 9.595823 CCGTTGGTATTCTTTTATAGAAGAAGA 57.404 33.333 19.67 14.44 45.73 2.87
4444 6614 8.827677 CCCGTTGGTATTCTTTTATAGAAGAAG 58.172 37.037 19.67 7.80 45.73 2.85
4458 6628 2.093869 TGTGACTAGCCCGTTGGTATTC 60.094 50.000 0.00 0.00 0.00 1.75
4460 6630 1.206371 GTGTGACTAGCCCGTTGGTAT 59.794 52.381 0.00 0.00 0.00 2.73
4461 6631 0.604578 GTGTGACTAGCCCGTTGGTA 59.395 55.000 0.00 0.00 0.00 3.25
4462 6632 1.370064 GTGTGACTAGCCCGTTGGT 59.630 57.895 0.00 0.00 0.00 3.67
4464 6634 0.949105 GTGGTGTGACTAGCCCGTTG 60.949 60.000 0.00 0.00 0.00 4.10
4466 6636 1.533273 AGTGGTGTGACTAGCCCGT 60.533 57.895 0.00 0.00 0.00 5.28
4467 6637 1.079819 CAGTGGTGTGACTAGCCCG 60.080 63.158 0.00 0.00 0.00 6.13
4468 6638 0.905357 ATCAGTGGTGTGACTAGCCC 59.095 55.000 0.00 0.00 0.00 5.19
4470 6640 1.363744 GCATCAGTGGTGTGACTAGC 58.636 55.000 5.06 0.00 0.00 3.42
4471 6641 1.202348 TCGCATCAGTGGTGTGACTAG 59.798 52.381 15.64 0.00 31.67 2.57
4472 6642 1.202348 CTCGCATCAGTGGTGTGACTA 59.798 52.381 15.64 0.00 33.04 2.59
4473 6643 0.037882 CTCGCATCAGTGGTGTGACT 60.038 55.000 15.64 0.00 33.04 3.41
4474 6644 0.319900 ACTCGCATCAGTGGTGTGAC 60.320 55.000 15.64 0.00 33.04 3.67
4476 6646 0.319813 TGACTCGCATCAGTGGTGTG 60.320 55.000 10.83 10.83 0.00 3.82
4477 6647 0.037882 CTGACTCGCATCAGTGGTGT 60.038 55.000 5.06 0.00 41.12 4.16
4478 6648 1.357258 GCTGACTCGCATCAGTGGTG 61.357 60.000 14.76 0.00 46.65 4.17
4479 6649 1.079543 GCTGACTCGCATCAGTGGT 60.080 57.895 14.76 0.00 46.65 4.16
4481 6651 1.079612 TGGCTGACTCGCATCAGTG 60.080 57.895 14.76 0.00 46.65 3.66
4482 6652 1.079543 GTGGCTGACTCGCATCAGT 60.080 57.895 14.76 0.00 46.65 3.41
4484 6654 1.079612 CTGTGGCTGACTCGCATCA 60.080 57.895 0.00 0.00 0.00 3.07
4485 6655 2.459442 GCTGTGGCTGACTCGCATC 61.459 63.158 0.00 0.00 35.22 3.91
4486 6656 2.435586 GCTGTGGCTGACTCGCAT 60.436 61.111 0.00 0.00 35.22 4.73
4489 6659 4.731612 AGCGCTGTGGCTGACTCG 62.732 66.667 10.39 0.00 42.86 4.18
4495 6665 3.086391 ATCGATCAGCGCTGTGGCT 62.086 57.895 34.70 18.88 46.13 4.75
4497 6667 1.520120 ACATCGATCAGCGCTGTGG 60.520 57.895 34.70 24.05 46.37 4.17
4498 6668 4.099403 ACATCGATCAGCGCTGTG 57.901 55.556 34.70 26.71 46.37 3.66
4500 6670 0.507358 CATCACATCGATCAGCGCTG 59.493 55.000 31.53 31.53 41.58 5.18
4501 6671 0.599466 CCATCACATCGATCAGCGCT 60.599 55.000 2.64 2.64 40.61 5.92
4502 6672 1.858041 CCATCACATCGATCAGCGC 59.142 57.895 0.00 0.00 40.61 5.92
4503 6673 1.858041 GCCATCACATCGATCAGCG 59.142 57.895 0.00 0.00 42.69 5.18
4504 6674 0.598419 TCGCCATCACATCGATCAGC 60.598 55.000 0.00 0.00 29.21 4.26
4505 6675 1.135046 GTCGCCATCACATCGATCAG 58.865 55.000 0.00 0.00 34.61 2.90
4506 6676 0.249447 GGTCGCCATCACATCGATCA 60.249 55.000 0.00 0.00 33.90 2.92
4507 6677 0.032678 AGGTCGCCATCACATCGATC 59.967 55.000 0.00 0.00 34.61 3.69
4508 6678 0.249615 CAGGTCGCCATCACATCGAT 60.250 55.000 0.00 0.00 34.61 3.59
4511 6681 2.182842 GCCAGGTCGCCATCACATC 61.183 63.158 0.00 0.00 0.00 3.06
4512 6682 2.124570 GCCAGGTCGCCATCACAT 60.125 61.111 0.00 0.00 0.00 3.21
4513 6683 3.610619 CTGCCAGGTCGCCATCACA 62.611 63.158 0.00 0.00 0.00 3.58
4514 6684 2.821366 CTGCCAGGTCGCCATCAC 60.821 66.667 0.00 0.00 0.00 3.06
4515 6685 4.783621 GCTGCCAGGTCGCCATCA 62.784 66.667 0.00 0.00 0.00 3.07
4516 6686 2.665008 TATGCTGCCAGGTCGCCATC 62.665 60.000 0.00 0.00 0.00 3.51
4517 6687 2.671370 CTATGCTGCCAGGTCGCCAT 62.671 60.000 0.00 0.00 0.00 4.40
4519 6689 2.590007 CTATGCTGCCAGGTCGCC 60.590 66.667 0.00 0.00 0.00 5.54
4520 6690 2.590007 CCTATGCTGCCAGGTCGC 60.590 66.667 8.77 0.00 0.00 5.19
4522 6692 2.590007 CGCCTATGCTGCCAGGTC 60.590 66.667 16.10 9.33 34.18 3.85
4523 6693 4.864334 GCGCCTATGCTGCCAGGT 62.864 66.667 16.10 0.00 34.18 4.00
4524 6694 4.559063 AGCGCCTATGCTGCCAGG 62.559 66.667 2.29 11.86 45.28 4.45
4539 6709 1.197264 CTCTTCAGTGAAGCAAGCAGC 59.803 52.381 25.31 0.00 39.29 5.25
4540 6710 2.763933 TCTCTTCAGTGAAGCAAGCAG 58.236 47.619 25.31 17.46 39.29 4.24
4541 6711 2.874701 GTTCTCTTCAGTGAAGCAAGCA 59.125 45.455 25.31 8.63 39.29 3.91
4542 6712 2.096516 CGTTCTCTTCAGTGAAGCAAGC 60.097 50.000 25.31 16.36 39.29 4.01
4543 6713 3.126831 ACGTTCTCTTCAGTGAAGCAAG 58.873 45.455 25.31 18.74 39.29 4.01
4544 6714 3.179443 ACGTTCTCTTCAGTGAAGCAA 57.821 42.857 25.31 17.57 39.29 3.91
4545 6715 2.866156 CAACGTTCTCTTCAGTGAAGCA 59.134 45.455 25.31 13.03 39.29 3.91
4546 6716 2.348966 GCAACGTTCTCTTCAGTGAAGC 60.349 50.000 25.31 12.07 39.29 3.86
4547 6717 2.866156 TGCAACGTTCTCTTCAGTGAAG 59.134 45.455 24.37 24.37 40.65 3.02
4548 6718 2.866156 CTGCAACGTTCTCTTCAGTGAA 59.134 45.455 5.25 5.25 0.00 3.18
4549 6719 2.473816 CTGCAACGTTCTCTTCAGTGA 58.526 47.619 0.00 0.00 0.00 3.41
4550 6720 1.070309 GCTGCAACGTTCTCTTCAGTG 60.070 52.381 0.00 0.00 0.00 3.66
4551 6721 1.221414 GCTGCAACGTTCTCTTCAGT 58.779 50.000 0.00 0.00 0.00 3.41
4552 6722 0.514691 GGCTGCAACGTTCTCTTCAG 59.485 55.000 0.00 2.46 0.00 3.02
4553 6723 0.884704 GGGCTGCAACGTTCTCTTCA 60.885 55.000 0.00 0.00 0.00 3.02
4554 6724 0.603975 AGGGCTGCAACGTTCTCTTC 60.604 55.000 0.00 0.00 0.00 2.87
4555 6725 0.886490 CAGGGCTGCAACGTTCTCTT 60.886 55.000 0.00 0.00 0.00 2.85
4556 6726 1.302033 CAGGGCTGCAACGTTCTCT 60.302 57.895 0.00 0.00 0.00 3.10
4557 6727 0.674895 ATCAGGGCTGCAACGTTCTC 60.675 55.000 0.00 0.00 0.00 2.87
4558 6728 0.250901 AATCAGGGCTGCAACGTTCT 60.251 50.000 0.00 0.00 0.00 3.01
4559 6729 1.448985 TAATCAGGGCTGCAACGTTC 58.551 50.000 0.00 0.00 0.00 3.95
4560 6730 1.904287 TTAATCAGGGCTGCAACGTT 58.096 45.000 0.50 0.00 0.00 3.99
4561 6731 2.128771 ATTAATCAGGGCTGCAACGT 57.871 45.000 0.50 0.00 0.00 3.99
4562 6732 3.181397 CAAATTAATCAGGGCTGCAACG 58.819 45.455 0.50 0.00 0.00 4.10
4563 6733 2.931969 GCAAATTAATCAGGGCTGCAAC 59.068 45.455 0.50 0.00 0.00 4.17
4564 6734 2.566279 TGCAAATTAATCAGGGCTGCAA 59.434 40.909 0.50 0.00 35.53 4.08
4565 6735 2.177734 TGCAAATTAATCAGGGCTGCA 58.822 42.857 0.50 0.00 36.06 4.41
4566 6736 2.965572 TGCAAATTAATCAGGGCTGC 57.034 45.000 0.00 0.00 0.00 5.25
4567 6737 4.124238 CCATTGCAAATTAATCAGGGCTG 58.876 43.478 1.71 0.00 0.00 4.85
4568 6738 3.135167 CCCATTGCAAATTAATCAGGGCT 59.865 43.478 1.71 0.00 0.00 5.19
4569 6739 3.469739 CCCATTGCAAATTAATCAGGGC 58.530 45.455 1.71 0.00 0.00 5.19
4570 6740 3.135167 AGCCCATTGCAAATTAATCAGGG 59.865 43.478 1.71 6.26 44.83 4.45
4571 6741 4.124238 CAGCCCATTGCAAATTAATCAGG 58.876 43.478 1.71 0.00 44.83 3.86
4572 6742 4.761975 ACAGCCCATTGCAAATTAATCAG 58.238 39.130 1.71 0.00 44.83 2.90
4573 6743 4.822685 ACAGCCCATTGCAAATTAATCA 57.177 36.364 1.71 0.00 44.83 2.57
4574 6744 4.746611 GCTACAGCCCATTGCAAATTAATC 59.253 41.667 1.71 0.00 44.83 1.75
4575 6745 4.406649 AGCTACAGCCCATTGCAAATTAAT 59.593 37.500 1.71 0.00 44.83 1.40
4576 6746 3.768757 AGCTACAGCCCATTGCAAATTAA 59.231 39.130 1.71 0.00 44.83 1.40
4577 6747 3.130869 CAGCTACAGCCCATTGCAAATTA 59.869 43.478 1.71 0.00 44.83 1.40
4629 6799 5.760253 GCTTACATAATCAGGTGTAGTGCAT 59.240 40.000 0.00 0.00 34.87 3.96
4705 6875 1.669795 GCATTACAGGGCTGCAACAAC 60.670 52.381 0.50 0.00 35.96 3.32
4800 6970 2.126467 CCAACGAATTTGCAACCACAG 58.874 47.619 0.00 0.00 33.34 3.66
4810 6980 8.201464 AGTTTGGTAATTTTCTCCAACGAATTT 58.799 29.630 0.00 0.00 40.32 1.82
4870 7040 9.856488 GCGTATCCTATGATAGTTGAATCTTTA 57.144 33.333 0.00 0.00 34.15 1.85
4879 7049 8.500753 TTTTGTTTGCGTATCCTATGATAGTT 57.499 30.769 0.00 0.00 34.15 2.24
4929 7099 6.098409 TGCCTTGGTATTTTTGTAAGTTTGGA 59.902 34.615 0.00 0.00 0.00 3.53
4936 7106 6.547880 TCTGTCTTGCCTTGGTATTTTTGTAA 59.452 34.615 0.00 0.00 0.00 2.41
4994 7164 2.027073 CTACTTGCGTTGCGAGCCA 61.027 57.895 5.96 0.00 43.36 4.75
5013 7183 2.096019 GTCTTGCTCTTCTTTCTTGCCG 60.096 50.000 0.00 0.00 0.00 5.69
5014 7184 3.145286 AGTCTTGCTCTTCTTTCTTGCC 58.855 45.455 0.00 0.00 0.00 4.52
5082 7252 6.861572 TCGCATTTAGACCTTCTACGATTATG 59.138 38.462 0.00 0.00 0.00 1.90
5095 7265 8.534333 TCAGTAATATTCATCGCATTTAGACC 57.466 34.615 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.