Multiple sequence alignment - TraesCS2A01G467600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G467600 chr2A 100.000 4956 0 0 1 4956 711885561 711880606 0.000000e+00 9153.0
1 TraesCS2A01G467600 chr2A 86.227 1031 96 26 3123 4123 711941620 711940606 0.000000e+00 1075.0
2 TraesCS2A01G467600 chr2A 84.536 970 110 17 738 1696 711942678 711941738 0.000000e+00 924.0
3 TraesCS2A01G467600 chr2A 100.000 38 0 0 4238 4275 711881261 711881224 2.480000e-08 71.3
4 TraesCS2A01G467600 chr2A 100.000 38 0 0 4301 4338 711881324 711881287 2.480000e-08 71.3
5 TraesCS2A01G467600 chr2A 97.500 40 1 0 13 52 711953402 711953363 8.900000e-08 69.4
6 TraesCS2A01G467600 chr2B 93.878 2532 101 25 2440 4956 688241393 688238901 0.000000e+00 3768.0
7 TraesCS2A01G467600 chr2B 92.284 972 53 9 746 1696 688242911 688241941 0.000000e+00 1360.0
8 TraesCS2A01G467600 chr2B 85.756 1025 107 25 3123 4123 688376331 688375322 0.000000e+00 1048.0
9 TraesCS2A01G467600 chr2B 82.462 1129 155 19 540 1654 688377572 688376473 0.000000e+00 948.0
10 TraesCS2A01G467600 chr2B 91.273 550 33 9 4052 4600 790049585 790049050 0.000000e+00 736.0
11 TraesCS2A01G467600 chr2B 94.638 373 20 0 2033 2405 688241761 688241389 3.330000e-161 579.0
12 TraesCS2A01G467600 chr2B 89.434 265 27 1 51 314 118067383 118067119 2.860000e-87 333.0
13 TraesCS2A01G467600 chr2B 94.681 188 10 0 1883 2070 688241948 688241761 4.850000e-75 292.0
14 TraesCS2A01G467600 chr2B 92.708 96 5 1 411 506 548943725 548943818 2.410000e-28 137.0
15 TraesCS2A01G467600 chr2B 94.366 71 4 0 309 379 688377835 688377765 5.250000e-20 110.0
16 TraesCS2A01G467600 chr2B 97.368 38 1 0 4301 4338 688239611 688239574 1.150000e-06 65.8
17 TraesCS2A01G467600 chr2D 89.582 1219 107 8 494 1696 572684852 572683638 0.000000e+00 1530.0
18 TraesCS2A01G467600 chr2D 86.926 1002 94 20 3123 4101 572695552 572694565 0.000000e+00 1090.0
19 TraesCS2A01G467600 chr2D 84.349 952 111 13 756 1696 572697022 572696098 0.000000e+00 898.0
20 TraesCS2A01G467600 chr2D 90.588 340 32 0 3124 3463 572683519 572683180 7.570000e-123 451.0
21 TraesCS2A01G467600 chr2D 97.143 105 3 0 309 413 572684959 572684855 1.420000e-40 178.0
22 TraesCS2A01G467600 chr2D 84.667 150 20 2 2067 2214 62282785 62282637 4.000000e-31 147.0
23 TraesCS2A01G467600 chr2D 87.500 128 13 3 1883 2009 572683645 572683520 1.440000e-30 145.0
24 TraesCS2A01G467600 chr2D 92.208 77 6 0 309 385 572703707 572703631 5.250000e-20 110.0
25 TraesCS2A01G467600 chr2D 100.000 29 0 0 24 52 572684986 572684958 2.000000e-03 54.7
26 TraesCS2A01G467600 chr3B 92.308 260 19 1 51 310 687075938 687075680 7.840000e-98 368.0
27 TraesCS2A01G467600 chr3B 99.462 186 1 0 1697 1882 257519655 257519470 6.150000e-89 339.0
28 TraesCS2A01G467600 chr3B 90.184 163 16 0 578 740 552226407 552226569 3.890000e-51 213.0
29 TraesCS2A01G467600 chr3D 91.571 261 22 0 51 311 67721037 67721297 1.310000e-95 361.0
30 TraesCS2A01G467600 chr3D 96.591 88 1 1 411 498 455100659 455100574 1.440000e-30 145.0
31 TraesCS2A01G467600 chr3D 93.750 96 3 2 404 498 603266266 603266359 1.860000e-29 141.0
32 TraesCS2A01G467600 chr5B 100.000 189 0 0 1697 1885 554512581 554512769 2.840000e-92 350.0
33 TraesCS2A01G467600 chr5B 100.000 187 0 0 1696 1882 111682504 111682690 3.670000e-91 346.0
34 TraesCS2A01G467600 chr5B 93.617 94 3 2 405 498 42938925 42939015 2.410000e-28 137.0
35 TraesCS2A01G467600 chr5A 90.769 260 24 0 51 310 529182579 529182838 1.020000e-91 348.0
36 TraesCS2A01G467600 chr5A 94.286 210 8 4 1697 1904 313879002 313878795 8.010000e-83 318.0
37 TraesCS2A01G467600 chr1A 90.805 261 22 2 51 310 533318247 533317988 1.020000e-91 348.0
38 TraesCS2A01G467600 chr1A 99.465 187 1 0 1696 1882 234211373 234211559 1.710000e-89 340.0
39 TraesCS2A01G467600 chr4B 100.000 187 0 0 1696 1882 256336501 256336687 3.670000e-91 346.0
40 TraesCS2A01G467600 chr4B 89.434 265 27 1 51 315 417766825 417767088 2.860000e-87 333.0
41 TraesCS2A01G467600 chr4B 90.303 165 16 0 576 740 28724306 28724142 3.000000e-52 217.0
42 TraesCS2A01G467600 chr7B 90.421 261 25 0 50 310 106108359 106108099 1.320000e-90 344.0
43 TraesCS2A01G467600 chr7B 98.936 188 2 0 1696 1883 400932163 400932350 2.210000e-88 337.0
44 TraesCS2A01G467600 chr7D 89.655 261 25 2 54 313 364683072 364682813 1.030000e-86 331.0
45 TraesCS2A01G467600 chr7D 87.374 198 22 2 2016 2211 65572950 65572754 1.800000e-54 224.0
46 TraesCS2A01G467600 chr6B 89.434 265 25 3 51 313 459599615 459599878 1.030000e-86 331.0
47 TraesCS2A01G467600 chr6B 94.787 211 6 4 1685 1892 560191708 560191500 1.720000e-84 324.0
48 TraesCS2A01G467600 chr6B 93.684 95 4 1 404 498 22555690 22555598 1.860000e-29 141.0
49 TraesCS2A01G467600 chr3A 96.000 200 6 2 1696 1894 743662093 743662291 1.720000e-84 324.0
50 TraesCS2A01G467600 chr1B 89.950 199 19 1 2016 2214 299455881 299455684 6.370000e-64 255.0
51 TraesCS2A01G467600 chr1B 89.157 166 17 1 578 743 314565699 314565535 6.500000e-49 206.0
52 TraesCS2A01G467600 chr5D 91.018 167 15 0 574 740 461072767 461072601 4.990000e-55 226.0
53 TraesCS2A01G467600 chr5D 95.506 89 2 1 406 494 548003506 548003592 1.860000e-29 141.0
54 TraesCS2A01G467600 chr5D 92.708 96 5 1 409 504 530874821 530874728 2.410000e-28 137.0
55 TraesCS2A01G467600 chrUn 83.197 244 37 4 2020 2260 51921927 51922169 2.320000e-53 220.0
56 TraesCS2A01G467600 chrUn 89.571 163 17 0 577 739 95767449 95767611 1.810000e-49 207.0
57 TraesCS2A01G467600 chr4D 89.205 176 17 2 569 742 378279910 378280085 8.350000e-53 219.0
58 TraesCS2A01G467600 chr4D 89.349 169 17 1 575 742 21147729 21147897 1.400000e-50 211.0
59 TraesCS2A01G467600 chr4D 83.333 198 29 3 2008 2205 3227863 3228056 3.940000e-41 180.0
60 TraesCS2A01G467600 chr4D 96.629 89 1 1 410 498 317189868 317189954 4.000000e-31 147.0
61 TraesCS2A01G467600 chr6D 90.123 162 16 0 578 739 351233435 351233596 1.400000e-50 211.0
62 TraesCS2A01G467600 chr6D 93.684 95 2 3 405 497 129710125 129710217 6.690000e-29 139.0
63 TraesCS2A01G467600 chr4A 81.890 254 34 8 2013 2260 602373378 602373131 2.340000e-48 204.0
64 TraesCS2A01G467600 chr4A 87.013 77 10 0 2007 2083 303045139 303045215 2.460000e-13 87.9
65 TraesCS2A01G467600 chr4A 87.013 77 10 0 2007 2083 303106169 303106245 2.460000e-13 87.9
66 TraesCS2A01G467600 chr7A 91.057 123 11 0 2083 2205 69733185 69733063 3.070000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G467600 chr2A 711880606 711885561 4955 True 9153.00 9153 100.0000 1 4956 1 chr2A.!!$R1 4955
1 TraesCS2A01G467600 chr2A 711940606 711942678 2072 True 999.50 1075 85.3815 738 4123 2 chr2A.!!$R4 3385
2 TraesCS2A01G467600 chr2B 688238901 688242911 4010 True 1212.96 3768 94.5698 746 4956 5 chr2B.!!$R3 4210
3 TraesCS2A01G467600 chr2B 790049050 790049585 535 True 736.00 736 91.2730 4052 4600 1 chr2B.!!$R2 548
4 TraesCS2A01G467600 chr2B 688375322 688377835 2513 True 702.00 1048 87.5280 309 4123 3 chr2B.!!$R4 3814
5 TraesCS2A01G467600 chr2D 572694565 572697022 2457 True 994.00 1090 85.6375 756 4101 2 chr2D.!!$R4 3345
6 TraesCS2A01G467600 chr2D 572683180 572684986 1806 True 471.74 1530 92.9626 24 3463 5 chr2D.!!$R3 3439

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.168788 CGCGATTGACTTTGCATGGT 59.831 50.0 0.0 0.0 0.00 3.55 F
1761 1909 0.179150 CTCGGAAGAAGTCGAGCCTG 60.179 60.0 0.0 0.0 44.68 4.85 F
2431 3045 0.038166 TGCCCCTTTCACTCATGGTC 59.962 55.0 0.0 0.0 0.00 4.02 F
2955 3570 0.036010 AGCTTGGAGGTCGTCAATGG 60.036 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 1937 0.168348 TCAGCTTAGTGTCGACTCGC 59.832 55.000 17.92 11.93 33.21 5.03 R
2800 3415 0.031721 GCCGTTCCTACATCCCTACG 59.968 60.000 0.00 0.00 0.00 3.51 R
3347 3963 2.264813 CCATTTGATGCCGAAAGCTTG 58.735 47.619 0.00 0.00 44.23 4.01 R
4536 5207 1.021968 GGTCCGGTTGCCAATATCAC 58.978 55.000 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.679373 ATAGTGCTCACTTGGATGGTAG 57.321 45.455 7.92 0.00 42.54 3.18
22 23 1.556911 AGTGCTCACTTGGATGGTAGG 59.443 52.381 0.00 0.00 38.83 3.18
50 51 3.181440 TGGGTCAGATGCTCTTTTGTTCT 60.181 43.478 0.00 0.00 0.00 3.01
51 52 4.041567 TGGGTCAGATGCTCTTTTGTTCTA 59.958 41.667 0.00 0.00 0.00 2.10
52 53 4.393371 GGGTCAGATGCTCTTTTGTTCTAC 59.607 45.833 0.00 0.00 0.00 2.59
53 54 5.241662 GGTCAGATGCTCTTTTGTTCTACT 58.758 41.667 0.00 0.00 0.00 2.57
54 55 5.350091 GGTCAGATGCTCTTTTGTTCTACTC 59.650 44.000 0.00 0.00 0.00 2.59
55 56 5.350091 GTCAGATGCTCTTTTGTTCTACTCC 59.650 44.000 0.00 0.00 0.00 3.85
56 57 4.633565 CAGATGCTCTTTTGTTCTACTCCC 59.366 45.833 0.00 0.00 0.00 4.30
57 58 4.534103 AGATGCTCTTTTGTTCTACTCCCT 59.466 41.667 0.00 0.00 0.00 4.20
58 59 4.273148 TGCTCTTTTGTTCTACTCCCTC 57.727 45.455 0.00 0.00 0.00 4.30
59 60 3.008049 TGCTCTTTTGTTCTACTCCCTCC 59.992 47.826 0.00 0.00 0.00 4.30
60 61 3.262151 GCTCTTTTGTTCTACTCCCTCCT 59.738 47.826 0.00 0.00 0.00 3.69
61 62 4.263112 GCTCTTTTGTTCTACTCCCTCCTT 60.263 45.833 0.00 0.00 0.00 3.36
62 63 5.483811 CTCTTTTGTTCTACTCCCTCCTTC 58.516 45.833 0.00 0.00 0.00 3.46
63 64 4.286291 TCTTTTGTTCTACTCCCTCCTTCC 59.714 45.833 0.00 0.00 0.00 3.46
64 65 2.249309 TGTTCTACTCCCTCCTTCCC 57.751 55.000 0.00 0.00 0.00 3.97
65 66 1.435563 TGTTCTACTCCCTCCTTCCCA 59.564 52.381 0.00 0.00 0.00 4.37
66 67 2.158066 TGTTCTACTCCCTCCTTCCCAA 60.158 50.000 0.00 0.00 0.00 4.12
67 68 2.910977 GTTCTACTCCCTCCTTCCCAAA 59.089 50.000 0.00 0.00 0.00 3.28
68 69 3.285290 TCTACTCCCTCCTTCCCAAAA 57.715 47.619 0.00 0.00 0.00 2.44
69 70 3.815507 TCTACTCCCTCCTTCCCAAAAT 58.184 45.455 0.00 0.00 0.00 1.82
70 71 4.967871 TCTACTCCCTCCTTCCCAAAATA 58.032 43.478 0.00 0.00 0.00 1.40
71 72 5.548573 TCTACTCCCTCCTTCCCAAAATAT 58.451 41.667 0.00 0.00 0.00 1.28
72 73 6.699688 TCTACTCCCTCCTTCCCAAAATATA 58.300 40.000 0.00 0.00 0.00 0.86
73 74 7.143741 TCTACTCCCTCCTTCCCAAAATATAA 58.856 38.462 0.00 0.00 0.00 0.98
74 75 6.267492 ACTCCCTCCTTCCCAAAATATAAG 57.733 41.667 0.00 0.00 0.00 1.73
75 76 5.134509 ACTCCCTCCTTCCCAAAATATAAGG 59.865 44.000 0.00 0.00 39.93 2.69
76 77 4.141018 TCCCTCCTTCCCAAAATATAAGGC 60.141 45.833 0.00 0.00 38.70 4.35
77 78 3.821033 CCTCCTTCCCAAAATATAAGGCG 59.179 47.826 0.00 0.00 38.70 5.52
78 79 3.219281 TCCTTCCCAAAATATAAGGCGC 58.781 45.455 0.00 0.00 38.70 6.53
79 80 2.031157 CCTTCCCAAAATATAAGGCGCG 60.031 50.000 0.00 0.00 32.66 6.86
80 81 2.623878 TCCCAAAATATAAGGCGCGA 57.376 45.000 12.10 0.00 0.00 5.87
81 82 3.134574 TCCCAAAATATAAGGCGCGAT 57.865 42.857 12.10 0.00 0.00 4.58
82 83 3.482436 TCCCAAAATATAAGGCGCGATT 58.518 40.909 12.10 6.21 0.00 3.34
83 84 3.252215 TCCCAAAATATAAGGCGCGATTG 59.748 43.478 12.10 0.00 0.00 2.67
84 85 3.252215 CCCAAAATATAAGGCGCGATTGA 59.748 43.478 12.10 0.00 0.00 2.57
85 86 4.219033 CCAAAATATAAGGCGCGATTGAC 58.781 43.478 12.10 0.00 0.00 3.18
86 87 4.024048 CCAAAATATAAGGCGCGATTGACT 60.024 41.667 12.10 0.00 0.00 3.41
87 88 5.505654 CCAAAATATAAGGCGCGATTGACTT 60.506 40.000 12.10 7.96 0.00 3.01
88 89 5.751243 AAATATAAGGCGCGATTGACTTT 57.249 34.783 12.10 0.00 0.00 2.66
89 90 4.732285 ATATAAGGCGCGATTGACTTTG 57.268 40.909 12.10 0.00 0.00 2.77
90 91 0.446222 TAAGGCGCGATTGACTTTGC 59.554 50.000 12.10 0.00 0.00 3.68
91 92 1.514678 AAGGCGCGATTGACTTTGCA 61.515 50.000 12.10 0.00 0.00 4.08
92 93 1.137404 GGCGCGATTGACTTTGCAT 59.863 52.632 12.10 0.00 0.00 3.96
93 94 1.135699 GGCGCGATTGACTTTGCATG 61.136 55.000 12.10 0.00 0.00 4.06
94 95 1.135699 GCGCGATTGACTTTGCATGG 61.136 55.000 12.10 0.00 0.00 3.66
95 96 0.168788 CGCGATTGACTTTGCATGGT 59.831 50.000 0.00 0.00 0.00 3.55
96 97 1.791555 CGCGATTGACTTTGCATGGTC 60.792 52.381 0.00 11.22 0.00 4.02
97 98 1.470098 GCGATTGACTTTGCATGGTCT 59.530 47.619 16.75 2.36 34.01 3.85
98 99 2.095059 GCGATTGACTTTGCATGGTCTT 60.095 45.455 16.75 7.73 34.01 3.01
99 100 3.612479 GCGATTGACTTTGCATGGTCTTT 60.612 43.478 16.75 7.46 34.01 2.52
100 101 3.916172 CGATTGACTTTGCATGGTCTTTG 59.084 43.478 16.75 7.86 34.01 2.77
101 102 4.320421 CGATTGACTTTGCATGGTCTTTGA 60.320 41.667 16.75 5.23 34.01 2.69
102 103 5.620654 CGATTGACTTTGCATGGTCTTTGAT 60.621 40.000 16.75 8.51 34.01 2.57
103 104 4.508461 TGACTTTGCATGGTCTTTGATG 57.492 40.909 16.75 0.00 34.01 3.07
104 105 3.890756 TGACTTTGCATGGTCTTTGATGT 59.109 39.130 16.75 0.00 34.01 3.06
105 106 5.069318 TGACTTTGCATGGTCTTTGATGTA 58.931 37.500 16.75 0.00 34.01 2.29
106 107 5.048782 TGACTTTGCATGGTCTTTGATGTAC 60.049 40.000 16.75 0.00 34.01 2.90
107 108 4.083324 ACTTTGCATGGTCTTTGATGTACG 60.083 41.667 0.00 0.00 0.00 3.67
108 109 3.326836 TGCATGGTCTTTGATGTACGA 57.673 42.857 0.00 0.00 0.00 3.43
109 110 3.669536 TGCATGGTCTTTGATGTACGAA 58.330 40.909 0.00 0.00 0.00 3.85
110 111 4.260985 TGCATGGTCTTTGATGTACGAAT 58.739 39.130 0.00 0.00 0.00 3.34
111 112 4.699735 TGCATGGTCTTTGATGTACGAATT 59.300 37.500 0.00 0.00 0.00 2.17
112 113 5.182950 TGCATGGTCTTTGATGTACGAATTT 59.817 36.000 0.00 0.00 0.00 1.82
113 114 5.512788 GCATGGTCTTTGATGTACGAATTTG 59.487 40.000 0.00 0.00 0.00 2.32
114 115 6.622679 GCATGGTCTTTGATGTACGAATTTGA 60.623 38.462 0.00 0.00 0.00 2.69
115 116 6.236017 TGGTCTTTGATGTACGAATTTGAC 57.764 37.500 0.00 0.00 0.00 3.18
116 117 5.180492 TGGTCTTTGATGTACGAATTTGACC 59.820 40.000 14.08 14.08 36.29 4.02
117 118 5.180492 GGTCTTTGATGTACGAATTTGACCA 59.820 40.000 15.32 0.00 36.03 4.02
118 119 6.077838 GTCTTTGATGTACGAATTTGACCAC 58.922 40.000 0.00 0.00 0.00 4.16
119 120 5.995282 TCTTTGATGTACGAATTTGACCACT 59.005 36.000 0.00 0.00 0.00 4.00
120 121 7.117236 GTCTTTGATGTACGAATTTGACCACTA 59.883 37.037 0.00 0.00 0.00 2.74
121 122 7.658167 TCTTTGATGTACGAATTTGACCACTAA 59.342 33.333 0.00 0.00 0.00 2.24
122 123 7.915293 TTGATGTACGAATTTGACCACTAAT 57.085 32.000 0.00 0.00 0.00 1.73
123 124 9.438228 TTTGATGTACGAATTTGACCACTAATA 57.562 29.630 0.00 0.00 0.00 0.98
124 125 9.607988 TTGATGTACGAATTTGACCACTAATAT 57.392 29.630 0.00 0.00 0.00 1.28
175 176 9.891828 TTTATAAATGGCATCATCGTATTTGTC 57.108 29.630 0.00 0.00 32.24 3.18
176 177 7.750229 ATAAATGGCATCATCGTATTTGTCT 57.250 32.000 0.00 0.00 32.24 3.41
177 178 6.455360 AAATGGCATCATCGTATTTGTCTT 57.545 33.333 0.00 0.00 32.24 3.01
178 179 4.880886 TGGCATCATCGTATTTGTCTTG 57.119 40.909 0.00 0.00 0.00 3.02
179 180 3.065233 TGGCATCATCGTATTTGTCTTGC 59.935 43.478 0.00 0.00 0.00 4.01
180 181 3.065233 GGCATCATCGTATTTGTCTTGCA 59.935 43.478 0.00 0.00 0.00 4.08
181 182 4.438608 GGCATCATCGTATTTGTCTTGCAA 60.439 41.667 0.00 0.00 34.87 4.08
256 257 7.589954 ACGTGAAAATAATAGTCAAAGTTGTGC 59.410 33.333 0.00 0.00 0.00 4.57
257 258 7.589587 CGTGAAAATAATAGTCAAAGTTGTGCA 59.410 33.333 0.00 0.00 0.00 4.57
258 259 8.905702 GTGAAAATAATAGTCAAAGTTGTGCAG 58.094 33.333 0.00 0.00 0.00 4.41
259 260 7.594758 TGAAAATAATAGTCAAAGTTGTGCAGC 59.405 33.333 0.00 0.00 0.00 5.25
260 261 6.573664 AATAATAGTCAAAGTTGTGCAGCA 57.426 33.333 0.00 0.00 0.00 4.41
261 262 4.916983 AATAGTCAAAGTTGTGCAGCAA 57.083 36.364 0.00 0.00 34.16 3.91
262 263 4.916983 ATAGTCAAAGTTGTGCAGCAAA 57.083 36.364 0.00 0.00 39.03 3.68
263 264 3.155093 AGTCAAAGTTGTGCAGCAAAG 57.845 42.857 0.00 0.00 39.03 2.77
264 265 2.754552 AGTCAAAGTTGTGCAGCAAAGA 59.245 40.909 0.00 0.00 39.03 2.52
265 266 2.854185 GTCAAAGTTGTGCAGCAAAGAC 59.146 45.455 0.00 0.00 39.03 3.01
266 267 2.159254 TCAAAGTTGTGCAGCAAAGACC 60.159 45.455 0.00 0.00 39.03 3.85
267 268 1.473258 AAGTTGTGCAGCAAAGACCA 58.527 45.000 0.00 0.00 39.03 4.02
268 269 1.473258 AGTTGTGCAGCAAAGACCAA 58.527 45.000 0.00 0.00 39.03 3.67
269 270 1.824230 AGTTGTGCAGCAAAGACCAAA 59.176 42.857 0.00 0.00 39.03 3.28
270 271 2.233431 AGTTGTGCAGCAAAGACCAAAA 59.767 40.909 0.00 0.00 39.03 2.44
271 272 2.999355 GTTGTGCAGCAAAGACCAAAAA 59.001 40.909 0.00 0.00 39.03 1.94
286 287 2.807247 AAAAAGTCAACTGGCGCCT 58.193 47.368 29.70 4.80 0.00 5.52
287 288 1.111277 AAAAAGTCAACTGGCGCCTT 58.889 45.000 29.70 12.19 0.00 4.35
288 289 1.975660 AAAAGTCAACTGGCGCCTTA 58.024 45.000 29.70 7.24 0.00 2.69
289 290 2.200373 AAAGTCAACTGGCGCCTTAT 57.800 45.000 29.70 10.19 0.00 1.73
290 291 3.343941 AAAGTCAACTGGCGCCTTATA 57.656 42.857 29.70 5.90 0.00 0.98
291 292 3.560636 AAGTCAACTGGCGCCTTATAT 57.439 42.857 29.70 6.47 0.00 0.86
292 293 3.560636 AGTCAACTGGCGCCTTATATT 57.439 42.857 29.70 11.51 0.00 1.28
293 294 3.886123 AGTCAACTGGCGCCTTATATTT 58.114 40.909 29.70 4.45 0.00 1.40
294 295 4.270008 AGTCAACTGGCGCCTTATATTTT 58.730 39.130 29.70 6.93 0.00 1.82
295 296 4.096382 AGTCAACTGGCGCCTTATATTTTG 59.904 41.667 29.70 17.98 0.00 2.44
296 297 3.380004 TCAACTGGCGCCTTATATTTTGG 59.620 43.478 29.70 6.06 0.00 3.28
297 298 2.306847 ACTGGCGCCTTATATTTTGGG 58.693 47.619 29.70 5.42 0.00 4.12
298 299 2.092103 ACTGGCGCCTTATATTTTGGGA 60.092 45.455 29.70 0.17 0.00 4.37
299 300 2.955660 CTGGCGCCTTATATTTTGGGAA 59.044 45.455 29.70 0.00 0.00 3.97
300 301 2.955660 TGGCGCCTTATATTTTGGGAAG 59.044 45.455 29.70 0.00 0.00 3.46
301 302 2.296190 GGCGCCTTATATTTTGGGAAGG 59.704 50.000 22.15 0.00 41.26 3.46
302 303 3.219281 GCGCCTTATATTTTGGGAAGGA 58.781 45.455 0.00 0.00 40.88 3.36
303 304 3.253432 GCGCCTTATATTTTGGGAAGGAG 59.747 47.826 0.00 1.55 40.88 3.69
304 305 3.821033 CGCCTTATATTTTGGGAAGGAGG 59.179 47.826 3.71 0.00 40.88 4.30
305 306 4.152647 GCCTTATATTTTGGGAAGGAGGG 58.847 47.826 3.71 0.00 40.88 4.30
306 307 4.141018 GCCTTATATTTTGGGAAGGAGGGA 60.141 45.833 3.71 0.00 40.88 4.20
307 308 5.635120 CCTTATATTTTGGGAAGGAGGGAG 58.365 45.833 0.00 0.00 40.88 4.30
318 319 5.162648 TGGGAAGGAGGGAGTATATTGGTAT 60.163 44.000 0.00 0.00 0.00 2.73
418 419 8.205131 TGTTGTTGTCTAAAAAGTACTTCCTC 57.795 34.615 8.95 0.00 0.00 3.71
419 420 7.281549 TGTTGTTGTCTAAAAAGTACTTCCTCC 59.718 37.037 8.95 0.00 0.00 4.30
422 423 5.776744 TGTCTAAAAAGTACTTCCTCCGTC 58.223 41.667 8.95 0.00 0.00 4.79
430 431 5.070823 AGTACTTCCTCCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
431 432 5.652324 AGTACTTCCTCCGTCCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
432 433 6.797707 AGTACTTCCTCCGTCCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
433 434 7.243824 AGTACTTCCTCCGTCCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
435 436 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
436 437 6.785963 ACTTCCTCCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
437 438 6.600882 TCCTCCGTCCCATAATATAAGAAC 57.399 41.667 0.00 0.00 0.00 3.01
438 439 5.184479 TCCTCCGTCCCATAATATAAGAACG 59.816 44.000 0.00 0.00 0.00 3.95
439 440 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
440 441 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
444 445 8.066000 CCGTCCCATAATATAAGAACGTTTTTC 58.934 37.037 7.42 0.00 0.00 2.29
448 449 9.233232 CCCATAATATAAGAACGTTTTTCAAGC 57.767 33.333 7.42 0.00 0.00 4.01
457 458 8.556517 AAGAACGTTTTTCAAGCTATGTTAAC 57.443 30.769 0.46 0.00 0.00 2.01
459 460 8.403236 AGAACGTTTTTCAAGCTATGTTAACTT 58.597 29.630 0.46 3.03 0.00 2.66
460 461 7.908193 ACGTTTTTCAAGCTATGTTAACTTG 57.092 32.000 7.22 2.84 41.70 3.16
468 469 7.699566 TCAAGCTATGTTAACTTGAAAAACGT 58.300 30.769 7.22 0.00 44.97 3.99
469 470 8.185505 TCAAGCTATGTTAACTTGAAAAACGTT 58.814 29.630 7.22 0.00 44.97 3.99
470 471 8.469125 CAAGCTATGTTAACTTGAAAAACGTTC 58.531 33.333 0.00 0.00 42.71 3.95
471 472 7.927048 AGCTATGTTAACTTGAAAAACGTTCT 58.073 30.769 0.00 0.00 0.00 3.01
472 473 8.403236 AGCTATGTTAACTTGAAAAACGTTCTT 58.597 29.630 0.00 0.00 0.00 2.52
473 474 9.654417 GCTATGTTAACTTGAAAAACGTTCTTA 57.346 29.630 0.00 0.00 0.00 2.10
488 489 8.767478 AAACGTTCTTATATTATATGGGACGG 57.233 34.615 17.78 6.99 0.00 4.79
489 490 7.707624 ACGTTCTTATATTATATGGGACGGA 57.292 36.000 17.78 0.00 0.00 4.69
490 491 7.769220 ACGTTCTTATATTATATGGGACGGAG 58.231 38.462 17.78 2.33 0.00 4.63
491 492 7.147949 ACGTTCTTATATTATATGGGACGGAGG 60.148 40.741 17.78 3.66 0.00 4.30
492 493 7.498443 GTTCTTATATTATATGGGACGGAGGG 58.502 42.308 0.00 0.00 0.00 4.30
493 494 6.988725 TCTTATATTATATGGGACGGAGGGA 58.011 40.000 0.00 0.00 0.00 4.20
494 495 7.067421 TCTTATATTATATGGGACGGAGGGAG 58.933 42.308 0.00 0.00 0.00 4.30
495 496 3.562108 ATTATATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
496 497 4.687262 ATTATATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
549 637 8.461222 CAGGTGCTAATGAGTTCATTCAAAATA 58.539 33.333 10.43 0.00 44.67 1.40
594 682 7.524698 GCTGTCTTATACTCCCTCCATTTCTAG 60.525 44.444 0.00 0.00 0.00 2.43
596 684 7.506261 TGTCTTATACTCCCTCCATTTCTAGAC 59.494 40.741 0.00 0.00 0.00 2.59
668 757 7.093902 ACAGACGGATTTTAGAGTGTAGATTCA 60.094 37.037 0.00 0.00 0.00 2.57
766 857 3.260475 TGTATGTACCATCTGCCACAC 57.740 47.619 0.00 0.00 0.00 3.82
791 882 4.160252 ACAACTGGCAGTTTTGACTTCAAT 59.840 37.500 29.32 1.91 36.03 2.57
968 1066 1.227853 ACAGGGCGTCCACTTTGTC 60.228 57.895 9.71 0.00 34.83 3.18
986 1084 8.128582 CACTTTGTCTGTTAAATTCTAAGCACA 58.871 33.333 0.00 0.00 0.00 4.57
990 1088 8.896320 TGTCTGTTAAATTCTAAGCACACTTA 57.104 30.769 0.00 0.00 37.33 2.24
991 1089 8.770828 TGTCTGTTAAATTCTAAGCACACTTAC 58.229 33.333 0.00 0.00 37.33 2.34
1075 1175 0.630673 TGCCAGGGTGCTTATTCCAT 59.369 50.000 0.00 0.00 0.00 3.41
1130 1245 1.373570 AAAAGCTATGAGAGGCGTGC 58.626 50.000 0.00 0.00 0.00 5.34
1142 1257 1.005630 GGCGTGCTCAAGAGACAGT 60.006 57.895 0.32 0.00 0.00 3.55
1158 1273 2.614057 GACAGTTAGTTTGCACAGTGCT 59.386 45.455 25.83 8.64 45.31 4.40
1393 1541 1.484240 CTGAGAGGGATGTTCCTGGAC 59.516 57.143 0.00 0.00 37.25 4.02
1481 1629 3.754850 TCTCTTCCAATGCACTCATGTTG 59.245 43.478 0.00 0.00 32.23 3.33
1508 1656 2.345991 CCACCACGACATCCCGTT 59.654 61.111 0.00 0.00 41.29 4.44
1544 1692 3.430651 CGCCAAGCCCAAATGTAATGAAT 60.431 43.478 0.00 0.00 0.00 2.57
1696 1844 7.493320 TGTCGTGTTTTGATAACTATCCATACC 59.507 37.037 0.00 0.00 31.71 2.73
1697 1845 7.493320 GTCGTGTTTTGATAACTATCCATACCA 59.507 37.037 0.00 0.00 31.71 3.25
1698 1846 8.208224 TCGTGTTTTGATAACTATCCATACCAT 58.792 33.333 0.00 0.00 31.71 3.55
1699 1847 8.282592 CGTGTTTTGATAACTATCCATACCATG 58.717 37.037 0.00 0.00 31.71 3.66
1711 1859 2.607635 CCATACCATGGTTTTCGAGTCG 59.392 50.000 25.38 6.09 45.54 4.18
1712 1860 1.717194 TACCATGGTTTTCGAGTCGC 58.283 50.000 25.38 0.00 0.00 5.19
1713 1861 1.289109 ACCATGGTTTTCGAGTCGCG 61.289 55.000 13.00 0.00 42.69 5.87
1745 1893 2.101965 CTCTGGAGCAGCGACTCG 59.898 66.667 0.00 0.00 37.57 4.18
1746 1894 3.408501 CTCTGGAGCAGCGACTCGG 62.409 68.421 0.00 0.28 37.57 4.63
1747 1895 3.443925 CTGGAGCAGCGACTCGGA 61.444 66.667 0.00 0.00 37.57 4.55
1748 1896 2.989253 TGGAGCAGCGACTCGGAA 60.989 61.111 0.00 0.00 37.57 4.30
1749 1897 2.202676 GGAGCAGCGACTCGGAAG 60.203 66.667 0.00 0.00 37.57 3.46
1750 1898 2.701780 GGAGCAGCGACTCGGAAGA 61.702 63.158 0.00 0.00 37.57 2.87
1751 1899 1.213013 GAGCAGCGACTCGGAAGAA 59.787 57.895 0.00 0.00 41.32 2.52
1752 1900 0.800300 GAGCAGCGACTCGGAAGAAG 60.800 60.000 0.00 0.00 41.32 2.85
1753 1901 1.080434 GCAGCGACTCGGAAGAAGT 60.080 57.895 0.00 0.00 41.32 3.01
1754 1902 1.073768 GCAGCGACTCGGAAGAAGTC 61.074 60.000 0.00 0.00 41.32 3.01
1759 1907 4.796225 CTCGGAAGAAGTCGAGCC 57.204 61.111 0.00 0.00 44.68 4.70
1760 1908 2.185238 CTCGGAAGAAGTCGAGCCT 58.815 57.895 0.00 0.00 44.68 4.58
1761 1909 0.179150 CTCGGAAGAAGTCGAGCCTG 60.179 60.000 0.00 0.00 44.68 4.85
1762 1910 0.894184 TCGGAAGAAGTCGAGCCTGT 60.894 55.000 0.00 0.00 37.03 4.00
1763 1911 0.734253 CGGAAGAAGTCGAGCCTGTG 60.734 60.000 0.00 0.00 0.00 3.66
1764 1912 0.318762 GGAAGAAGTCGAGCCTGTGT 59.681 55.000 0.00 0.00 0.00 3.72
1765 1913 1.270358 GGAAGAAGTCGAGCCTGTGTT 60.270 52.381 0.00 0.00 0.00 3.32
1766 1914 1.795286 GAAGAAGTCGAGCCTGTGTTG 59.205 52.381 0.00 0.00 0.00 3.33
1767 1915 0.753262 AGAAGTCGAGCCTGTGTTGT 59.247 50.000 0.00 0.00 0.00 3.32
1768 1916 0.861837 GAAGTCGAGCCTGTGTTGTG 59.138 55.000 0.00 0.00 0.00 3.33
1769 1917 0.464036 AAGTCGAGCCTGTGTTGTGA 59.536 50.000 0.00 0.00 0.00 3.58
1770 1918 0.249489 AGTCGAGCCTGTGTTGTGAC 60.249 55.000 0.00 0.00 0.00 3.67
1771 1919 0.249489 GTCGAGCCTGTGTTGTGACT 60.249 55.000 0.00 0.00 0.00 3.41
1772 1920 1.000607 GTCGAGCCTGTGTTGTGACTA 60.001 52.381 0.00 0.00 0.00 2.59
1773 1921 1.269723 TCGAGCCTGTGTTGTGACTAG 59.730 52.381 0.00 0.00 0.00 2.57
1774 1922 1.000163 CGAGCCTGTGTTGTGACTAGT 60.000 52.381 0.00 0.00 0.00 2.57
1775 1923 2.678324 GAGCCTGTGTTGTGACTAGTC 58.322 52.381 16.32 16.32 0.00 2.59
1776 1924 1.000163 AGCCTGTGTTGTGACTAGTCG 60.000 52.381 17.85 1.64 0.00 4.18
1777 1925 1.419374 CCTGTGTTGTGACTAGTCGC 58.581 55.000 26.18 26.18 40.32 5.19
1778 1926 1.053048 CTGTGTTGTGACTAGTCGCG 58.947 55.000 26.76 11.21 42.66 5.87
1779 1927 0.664224 TGTGTTGTGACTAGTCGCGA 59.336 50.000 26.76 23.69 42.66 5.87
1781 1929 3.769228 GTTGTGACTAGTCGCGACT 57.231 52.632 40.17 40.17 46.04 4.18
1782 1930 1.604396 GTTGTGACTAGTCGCGACTC 58.396 55.000 42.28 28.88 46.04 3.36
1783 1931 1.069432 GTTGTGACTAGTCGCGACTCA 60.069 52.381 42.28 31.02 46.04 3.41
1784 1932 0.796927 TGTGACTAGTCGCGACTCAG 59.203 55.000 42.28 33.82 42.66 3.35
1785 1933 1.077123 GTGACTAGTCGCGACTCAGA 58.923 55.000 42.28 25.68 42.54 3.27
1786 1934 1.666700 GTGACTAGTCGCGACTCAGAT 59.333 52.381 42.28 26.17 42.54 2.90
1787 1935 2.096174 GTGACTAGTCGCGACTCAGATT 59.904 50.000 42.28 21.41 42.54 2.40
1788 1936 2.352034 TGACTAGTCGCGACTCAGATTC 59.648 50.000 42.28 27.62 42.54 2.52
1789 1937 1.328069 ACTAGTCGCGACTCAGATTCG 59.672 52.381 42.28 23.65 42.54 3.34
1796 1944 2.848213 GACTCAGATTCGCGAGTCG 58.152 57.895 23.47 18.27 46.20 4.18
1797 1945 0.374063 GACTCAGATTCGCGAGTCGA 59.626 55.000 23.47 20.88 46.20 4.20
1805 1953 1.134075 TCGCGAGTCGACACTAAGC 59.866 57.895 18.61 13.51 43.16 3.09
1806 1954 1.134901 CGCGAGTCGACACTAAGCT 59.865 57.895 18.61 0.00 41.67 3.74
1807 1955 1.128724 CGCGAGTCGACACTAAGCTG 61.129 60.000 18.61 7.91 41.67 4.24
1808 1956 0.168348 GCGAGTCGACACTAAGCTGA 59.832 55.000 18.61 0.00 34.91 4.26
1809 1957 1.792273 GCGAGTCGACACTAAGCTGAG 60.792 57.143 18.61 0.00 34.91 3.35
1810 1958 1.465387 CGAGTCGACACTAAGCTGAGT 59.535 52.381 19.50 0.00 30.63 3.41
1811 1959 2.474856 CGAGTCGACACTAAGCTGAGTC 60.475 54.545 19.50 0.00 30.63 3.36
1815 1963 2.265647 GACACTAAGCTGAGTCGACC 57.734 55.000 13.01 4.42 0.00 4.79
1816 1964 1.540267 GACACTAAGCTGAGTCGACCA 59.460 52.381 13.01 9.18 0.00 4.02
1817 1965 2.164624 GACACTAAGCTGAGTCGACCAT 59.835 50.000 13.01 0.00 0.00 3.55
1818 1966 3.353557 ACACTAAGCTGAGTCGACCATA 58.646 45.455 13.01 0.00 0.00 2.74
1819 1967 3.954904 ACACTAAGCTGAGTCGACCATAT 59.045 43.478 13.01 0.00 0.00 1.78
1820 1968 4.402793 ACACTAAGCTGAGTCGACCATATT 59.597 41.667 13.01 9.73 0.00 1.28
1821 1969 5.105310 ACACTAAGCTGAGTCGACCATATTT 60.105 40.000 13.01 4.77 0.00 1.40
1822 1970 5.812642 CACTAAGCTGAGTCGACCATATTTT 59.187 40.000 13.01 3.16 0.00 1.82
1823 1971 6.313905 CACTAAGCTGAGTCGACCATATTTTT 59.686 38.462 13.01 1.53 0.00 1.94
1824 1972 5.551760 AAGCTGAGTCGACCATATTTTTG 57.448 39.130 13.01 0.00 0.00 2.44
1825 1973 3.375299 AGCTGAGTCGACCATATTTTTGC 59.625 43.478 13.01 7.80 0.00 3.68
1826 1974 3.785505 GCTGAGTCGACCATATTTTTGCG 60.786 47.826 13.01 0.00 0.00 4.85
1827 1975 3.591023 TGAGTCGACCATATTTTTGCGA 58.409 40.909 13.01 0.00 0.00 5.10
1828 1976 3.369756 TGAGTCGACCATATTTTTGCGAC 59.630 43.478 13.01 0.00 45.83 5.19
1830 1978 3.924610 GTCGACCATATTTTTGCGACTC 58.075 45.455 3.51 0.00 43.18 3.36
1831 1979 3.369756 GTCGACCATATTTTTGCGACTCA 59.630 43.478 3.51 0.00 43.18 3.41
1832 1980 4.034048 GTCGACCATATTTTTGCGACTCAT 59.966 41.667 3.51 0.00 43.18 2.90
1833 1981 5.233476 GTCGACCATATTTTTGCGACTCATA 59.767 40.000 3.51 0.00 43.18 2.15
1834 1982 5.462068 TCGACCATATTTTTGCGACTCATAG 59.538 40.000 0.00 0.00 0.00 2.23
1835 1983 5.462068 CGACCATATTTTTGCGACTCATAGA 59.538 40.000 0.00 0.00 0.00 1.98
1836 1984 6.562270 CGACCATATTTTTGCGACTCATAGAC 60.562 42.308 0.00 0.00 0.00 2.59
1837 1985 6.349300 ACCATATTTTTGCGACTCATAGACT 58.651 36.000 0.00 0.00 0.00 3.24
1838 1986 7.497595 ACCATATTTTTGCGACTCATAGACTA 58.502 34.615 0.00 0.00 0.00 2.59
1839 1987 7.653713 ACCATATTTTTGCGACTCATAGACTAG 59.346 37.037 0.00 0.00 0.00 2.57
1840 1988 7.653713 CCATATTTTTGCGACTCATAGACTAGT 59.346 37.037 0.00 0.00 0.00 2.57
1841 1989 8.695284 CATATTTTTGCGACTCATAGACTAGTC 58.305 37.037 15.41 15.41 39.00 2.59
1882 2030 2.209838 GAGCGACTCGAAATCCATGA 57.790 50.000 1.63 0.00 0.00 3.07
1883 2031 2.748605 GAGCGACTCGAAATCCATGAT 58.251 47.619 1.63 0.00 0.00 2.45
1884 2032 2.728839 GAGCGACTCGAAATCCATGATC 59.271 50.000 1.63 0.00 0.00 2.92
1885 2033 1.795286 GCGACTCGAAATCCATGATCC 59.205 52.381 1.63 0.00 0.00 3.36
1886 2034 2.803133 GCGACTCGAAATCCATGATCCA 60.803 50.000 1.63 0.00 0.00 3.41
1887 2035 3.657634 CGACTCGAAATCCATGATCCAT 58.342 45.455 0.00 0.00 0.00 3.41
1888 2036 4.809673 CGACTCGAAATCCATGATCCATA 58.190 43.478 0.00 0.00 0.00 2.74
1889 2037 4.623167 CGACTCGAAATCCATGATCCATAC 59.377 45.833 0.00 0.00 0.00 2.39
2032 2609 4.650972 TGGGTTGTTTGGATAGCTAGTT 57.349 40.909 0.00 0.00 0.00 2.24
2045 2622 7.913789 TGGATAGCTAGTTTTTAGAGAACCAA 58.086 34.615 0.00 0.00 0.00 3.67
2086 2700 8.393366 GTTTCGGAGTCTAACAAACTAAAACTT 58.607 33.333 0.00 0.00 0.00 2.66
2095 2709 8.586744 TCTAACAAACTAAAACTTTGTTTGGGT 58.413 29.630 21.72 14.97 45.37 4.51
2151 2765 5.220796 GGTTCTCGTAATACCCAAAATCTGC 60.221 44.000 0.00 0.00 0.00 4.26
2158 2772 6.183359 CGTAATACCCAAAATCTGCGTTTTTG 60.183 38.462 13.29 13.29 41.53 2.44
2214 2828 4.684242 GCGTTTTAGAAAAATGGGTCTTGG 59.316 41.667 6.50 0.00 0.00 3.61
2300 2914 2.954611 CTGCGACGTCAGGAGACA 59.045 61.111 17.16 2.57 45.23 3.41
2315 2929 0.316772 AGACACGACAGAACGTCACG 60.317 55.000 0.00 0.00 45.70 4.35
2358 2972 0.657659 CGGCGACTATGCTCTGTACG 60.658 60.000 0.00 0.00 34.52 3.67
2363 2977 0.460311 ACTATGCTCTGTACGGCCAC 59.540 55.000 2.24 0.00 0.00 5.01
2389 3003 1.507174 GCGACTTCGTAGTCCTGCT 59.493 57.895 15.53 0.00 46.63 4.24
2398 3012 1.001760 TAGTCCTGCTGACCTCCCC 59.998 63.158 3.72 0.00 45.68 4.81
2399 3013 1.811025 TAGTCCTGCTGACCTCCCCA 61.811 60.000 3.72 0.00 45.68 4.96
2405 3019 3.636231 CTGACCTCCCCAACGGCA 61.636 66.667 0.00 0.00 0.00 5.69
2406 3020 3.901797 CTGACCTCCCCAACGGCAC 62.902 68.421 0.00 0.00 0.00 5.01
2425 3039 3.435186 GCGCTGCCCCTTTCACTC 61.435 66.667 0.00 0.00 0.00 3.51
2426 3040 2.032528 CGCTGCCCCTTTCACTCA 59.967 61.111 0.00 0.00 0.00 3.41
2427 3041 1.377725 CGCTGCCCCTTTCACTCAT 60.378 57.895 0.00 0.00 0.00 2.90
2428 3042 1.651240 CGCTGCCCCTTTCACTCATG 61.651 60.000 0.00 0.00 0.00 3.07
2429 3043 1.318158 GCTGCCCCTTTCACTCATGG 61.318 60.000 0.00 0.00 0.00 3.66
2430 3044 0.038744 CTGCCCCTTTCACTCATGGT 59.961 55.000 0.00 0.00 0.00 3.55
2431 3045 0.038166 TGCCCCTTTCACTCATGGTC 59.962 55.000 0.00 0.00 0.00 4.02
2432 3046 0.681243 GCCCCTTTCACTCATGGTCC 60.681 60.000 0.00 0.00 0.00 4.46
2433 3047 0.995024 CCCCTTTCACTCATGGTCCT 59.005 55.000 0.00 0.00 0.00 3.85
2434 3048 1.340405 CCCCTTTCACTCATGGTCCTG 60.340 57.143 0.00 0.00 0.00 3.86
2435 3049 1.340405 CCCTTTCACTCATGGTCCTGG 60.340 57.143 0.00 0.00 0.00 4.45
2436 3050 1.630369 CCTTTCACTCATGGTCCTGGA 59.370 52.381 0.00 0.00 0.00 3.86
2437 3051 2.355513 CCTTTCACTCATGGTCCTGGAG 60.356 54.545 0.00 8.34 34.85 3.86
2438 3052 0.615331 TTCACTCATGGTCCTGGAGC 59.385 55.000 18.72 18.72 31.88 4.70
2439 3053 0.545071 TCACTCATGGTCCTGGAGCA 60.545 55.000 28.70 28.70 44.17 4.26
2440 3054 0.392193 CACTCATGGTCCTGGAGCAC 60.392 60.000 29.08 8.29 42.86 4.40
2441 3055 1.153489 CTCATGGTCCTGGAGCACG 60.153 63.158 29.08 22.26 42.86 5.34
2442 3056 1.607801 CTCATGGTCCTGGAGCACGA 61.608 60.000 29.08 25.11 42.86 4.35
2467 3081 1.302832 CACGCTTTTCCTCCAGCCT 60.303 57.895 0.00 0.00 31.82 4.58
2570 3184 1.544093 CCGCTGCCTGGATATTGATGT 60.544 52.381 0.00 0.00 0.00 3.06
2668 3282 1.255667 GGTGCTGGGAGGACGAGTTA 61.256 60.000 0.00 0.00 37.44 2.24
2736 3351 5.789021 CGATATCACGTTGGTATAAGAGACG 59.211 44.000 3.12 0.00 39.43 4.18
2753 3368 3.357079 GCACCGGCCACACAGAAG 61.357 66.667 0.00 0.00 0.00 2.85
2758 3373 1.599047 CGGCCACACAGAAGAGGAT 59.401 57.895 2.24 0.00 0.00 3.24
2786 3401 2.125106 GGGCAGAGCTTGTACGGG 60.125 66.667 0.00 0.00 0.00 5.28
2788 3403 1.153549 GGCAGAGCTTGTACGGGAG 60.154 63.158 0.00 0.00 0.00 4.30
2789 3404 1.811679 GCAGAGCTTGTACGGGAGC 60.812 63.158 7.41 7.41 39.17 4.70
2790 3405 1.153549 CAGAGCTTGTACGGGAGCC 60.154 63.158 10.85 4.80 39.71 4.70
2816 3431 2.762327 TGGAACGTAGGGATGTAGGAAC 59.238 50.000 0.00 0.00 0.00 3.62
2874 3489 3.692406 GCGGGGAGTCGTCAAGGT 61.692 66.667 0.00 0.00 0.00 3.50
2955 3570 0.036010 AGCTTGGAGGTCGTCAATGG 60.036 55.000 0.00 0.00 0.00 3.16
2977 3592 5.540337 TGGCTAGTTTGAGAAAGAGAGAGAA 59.460 40.000 0.00 0.00 0.00 2.87
3015 3630 6.521162 GTGGGGTATCAAAACATGTTTTTCT 58.479 36.000 29.42 21.71 40.45 2.52
3097 3712 3.244318 ACTCGTTTTCTAAATCCCCGTGT 60.244 43.478 0.00 0.00 0.00 4.49
3504 4161 6.839124 ACTCCATGATTTCTGTAATGCAAA 57.161 33.333 0.00 0.00 0.00 3.68
3615 4275 7.260603 GGAATATGAGGACCATTTTTGTTGAG 58.739 38.462 0.00 0.00 36.71 3.02
3988 4656 2.504367 TCCAGCTTCCTTGTTAAGTGC 58.496 47.619 0.00 0.00 0.00 4.40
4159 4829 6.716628 GCTGGATCATTGATATTTACCCTTGA 59.283 38.462 0.00 0.00 0.00 3.02
4172 4842 7.716799 ATTTACCCTTGAATTAGCATGACAA 57.283 32.000 0.00 0.00 0.00 3.18
4190 4860 7.592938 CATGACAAGTAGAAAACTATTGCCAA 58.407 34.615 0.00 0.00 37.50 4.52
4213 4883 2.548057 TCGTTTCTGTTGGCTGATTGTC 59.452 45.455 0.00 0.00 0.00 3.18
4214 4884 2.290367 CGTTTCTGTTGGCTGATTGTCA 59.710 45.455 0.00 0.00 0.00 3.58
4246 4916 4.040339 TCATAAGGGATTATGCTTCAGCGA 59.960 41.667 3.62 0.00 45.83 4.93
4304 4975 3.111038 GCGTTAGGCATGGGCTTC 58.889 61.111 0.00 0.00 42.87 3.86
4307 4978 1.718757 CGTTAGGCATGGGCTTCAGC 61.719 60.000 0.00 0.00 39.70 4.26
4308 4979 1.451927 TTAGGCATGGGCTTCAGCG 60.452 57.895 0.00 0.00 43.26 5.18
4310 4981 1.699054 TAGGCATGGGCTTCAGCGAT 61.699 55.000 0.00 0.00 43.26 4.58
4311 4982 2.550101 GGCATGGGCTTCAGCGATC 61.550 63.158 0.00 0.00 43.26 3.69
4312 4983 1.525535 GCATGGGCTTCAGCGATCT 60.526 57.895 0.00 0.00 43.26 2.75
4314 4985 1.610102 GCATGGGCTTCAGCGATCTAT 60.610 52.381 0.00 0.00 43.26 1.98
4315 4986 2.775890 CATGGGCTTCAGCGATCTATT 58.224 47.619 0.00 0.00 43.26 1.73
4316 4987 3.866066 GCATGGGCTTCAGCGATCTATTA 60.866 47.826 0.00 0.00 43.26 0.98
4317 4988 4.318332 CATGGGCTTCAGCGATCTATTAA 58.682 43.478 0.00 0.00 43.26 1.40
4319 4990 4.973168 TGGGCTTCAGCGATCTATTAATT 58.027 39.130 0.00 0.00 43.26 1.40
4320 4991 6.109156 TGGGCTTCAGCGATCTATTAATTA 57.891 37.500 0.00 0.00 43.26 1.40
4323 4994 6.426937 GGGCTTCAGCGATCTATTAATTACAA 59.573 38.462 0.00 0.00 43.26 2.41
4324 4995 7.041372 GGGCTTCAGCGATCTATTAATTACAAA 60.041 37.037 0.00 0.00 43.26 2.83
4325 4996 8.012241 GGCTTCAGCGATCTATTAATTACAAAG 58.988 37.037 0.00 0.00 43.26 2.77
4326 4997 8.552034 GCTTCAGCGATCTATTAATTACAAAGT 58.448 33.333 0.00 0.00 0.00 2.66
4327 4998 9.855361 CTTCAGCGATCTATTAATTACAAAGTG 57.145 33.333 0.00 0.00 0.00 3.16
4328 4999 8.365399 TCAGCGATCTATTAATTACAAAGTGG 57.635 34.615 0.00 0.00 0.00 4.00
4329 5000 7.042051 TCAGCGATCTATTAATTACAAAGTGGC 60.042 37.037 0.00 0.00 0.00 5.01
4330 5001 6.765989 AGCGATCTATTAATTACAAAGTGGCA 59.234 34.615 0.00 0.00 0.00 4.92
4331 5002 7.445402 AGCGATCTATTAATTACAAAGTGGCAT 59.555 33.333 0.00 0.00 0.00 4.40
4332 5003 8.076178 GCGATCTATTAATTACAAAGTGGCATT 58.924 33.333 0.00 0.00 0.00 3.56
4333 5004 9.950680 CGATCTATTAATTACAAAGTGGCATTT 57.049 29.630 0.00 0.00 0.00 2.32
4353 5024 5.940192 TTTCTGTTTGTAGTAGCATGGTG 57.060 39.130 7.89 0.00 0.00 4.17
4386 5057 6.628919 AAAATTGTTTGAACCTACGCTAGT 57.371 33.333 0.00 0.00 0.00 2.57
4387 5058 5.607119 AATTGTTTGAACCTACGCTAGTG 57.393 39.130 0.59 0.59 0.00 2.74
4395 5066 4.277672 TGAACCTACGCTAGTGATACATCC 59.722 45.833 10.99 0.00 0.00 3.51
4491 5162 8.089115 ACAGATTTCAGTTTAGTCTTTGTAGC 57.911 34.615 0.00 0.00 0.00 3.58
4498 5169 6.650807 TCAGTTTAGTCTTTGTAGCCATTCTG 59.349 38.462 0.00 0.00 0.00 3.02
4502 5173 1.284785 TCTTTGTAGCCATTCTGGGGG 59.715 52.381 0.00 0.00 38.19 5.40
4507 5178 1.005450 GTAGCCATTCTGGGGGACAAA 59.995 52.381 0.00 0.00 38.19 2.83
4508 5179 0.712380 AGCCATTCTGGGGGACAAAT 59.288 50.000 0.00 0.00 38.19 2.32
4677 5348 5.414454 AGCAAAAATGATACCTACGCAAGAA 59.586 36.000 0.00 0.00 43.62 2.52
4678 5349 6.072175 AGCAAAAATGATACCTACGCAAGAAA 60.072 34.615 0.00 0.00 43.62 2.52
4681 5352 7.865706 AAAATGATACCTACGCAAGAAATCT 57.134 32.000 0.00 0.00 43.62 2.40
4746 5417 5.449304 GTTTGCACTGTTATGGTACTTGTC 58.551 41.667 0.00 0.00 0.00 3.18
4757 5428 3.597255 TGGTACTTGTCGAACAAACACA 58.403 40.909 0.00 0.00 37.69 3.72
4780 5451 4.082245 AGCTCGGATAAAATGTTTTGTGGG 60.082 41.667 1.16 0.00 0.00 4.61
4807 5490 0.031111 AGGCATGCCCTAGTCCAGTA 60.031 55.000 33.14 0.00 44.08 2.74
4856 5539 5.065988 GGTCTGATCAGTTAGACAGACTCTC 59.934 48.000 21.92 5.90 45.04 3.20
4857 5540 5.880332 GTCTGATCAGTTAGACAGACTCTCT 59.120 44.000 21.92 0.00 43.84 3.10
4888 5571 3.160777 AGCGTCTCCGTAAATTGTAGG 57.839 47.619 0.00 0.00 36.15 3.18
4900 5583 6.259387 CCGTAAATTGTAGGGTAGTCATTTCC 59.741 42.308 0.00 0.00 0.00 3.13
4901 5584 6.019318 CGTAAATTGTAGGGTAGTCATTTCCG 60.019 42.308 0.00 0.00 0.00 4.30
4903 5586 4.895668 TTGTAGGGTAGTCATTTCCGTT 57.104 40.909 0.00 0.00 0.00 4.44
4904 5587 4.196626 TGTAGGGTAGTCATTTCCGTTG 57.803 45.455 0.00 0.00 0.00 4.10
4905 5588 3.833650 TGTAGGGTAGTCATTTCCGTTGA 59.166 43.478 0.00 0.00 0.00 3.18
4906 5589 3.611766 AGGGTAGTCATTTCCGTTGAG 57.388 47.619 0.00 0.00 0.00 3.02
4910 5593 4.517832 GGGTAGTCATTTCCGTTGAGTTTT 59.482 41.667 0.00 0.00 0.00 2.43
4911 5594 5.009310 GGGTAGTCATTTCCGTTGAGTTTTT 59.991 40.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.389329 CCTACCATCCAAGTGAGCACTAT 59.611 47.826 3.21 0.00 41.58 2.12
1 2 2.766263 CCTACCATCCAAGTGAGCACTA 59.234 50.000 3.21 0.00 41.58 2.74
2 3 1.556911 CCTACCATCCAAGTGAGCACT 59.443 52.381 0.00 0.00 44.94 4.40
3 4 1.279271 ACCTACCATCCAAGTGAGCAC 59.721 52.381 0.00 0.00 0.00 4.40
4 5 1.656587 ACCTACCATCCAAGTGAGCA 58.343 50.000 0.00 0.00 0.00 4.26
5 6 2.359900 CAACCTACCATCCAAGTGAGC 58.640 52.381 0.00 0.00 0.00 4.26
6 7 2.571653 TCCAACCTACCATCCAAGTGAG 59.428 50.000 0.00 0.00 0.00 3.51
7 8 2.626785 TCCAACCTACCATCCAAGTGA 58.373 47.619 0.00 0.00 0.00 3.41
8 9 3.282021 CATCCAACCTACCATCCAAGTG 58.718 50.000 0.00 0.00 0.00 3.16
9 10 2.242196 CCATCCAACCTACCATCCAAGT 59.758 50.000 0.00 0.00 0.00 3.16
10 11 2.423373 CCCATCCAACCTACCATCCAAG 60.423 54.545 0.00 0.00 0.00 3.61
11 12 1.568597 CCCATCCAACCTACCATCCAA 59.431 52.381 0.00 0.00 0.00 3.53
12 13 1.221635 CCCATCCAACCTACCATCCA 58.778 55.000 0.00 0.00 0.00 3.41
13 14 1.143073 GACCCATCCAACCTACCATCC 59.857 57.143 0.00 0.00 0.00 3.51
14 15 1.843851 TGACCCATCCAACCTACCATC 59.156 52.381 0.00 0.00 0.00 3.51
15 16 1.846439 CTGACCCATCCAACCTACCAT 59.154 52.381 0.00 0.00 0.00 3.55
16 17 1.203376 TCTGACCCATCCAACCTACCA 60.203 52.381 0.00 0.00 0.00 3.25
17 18 1.580059 TCTGACCCATCCAACCTACC 58.420 55.000 0.00 0.00 0.00 3.18
18 19 2.746472 GCATCTGACCCATCCAACCTAC 60.746 54.545 0.00 0.00 0.00 3.18
19 20 1.490490 GCATCTGACCCATCCAACCTA 59.510 52.381 0.00 0.00 0.00 3.08
20 21 0.257039 GCATCTGACCCATCCAACCT 59.743 55.000 0.00 0.00 0.00 3.50
21 22 0.257039 AGCATCTGACCCATCCAACC 59.743 55.000 0.00 0.00 0.00 3.77
22 23 1.673168 GAGCATCTGACCCATCCAAC 58.327 55.000 0.00 0.00 0.00 3.77
50 51 6.331837 CCTTATATTTTGGGAAGGAGGGAGTA 59.668 42.308 0.00 0.00 40.88 2.59
51 52 5.134509 CCTTATATTTTGGGAAGGAGGGAGT 59.865 44.000 0.00 0.00 40.88 3.85
52 53 5.635120 CCTTATATTTTGGGAAGGAGGGAG 58.365 45.833 0.00 0.00 40.88 4.30
53 54 4.141018 GCCTTATATTTTGGGAAGGAGGGA 60.141 45.833 3.71 0.00 40.88 4.20
54 55 4.152647 GCCTTATATTTTGGGAAGGAGGG 58.847 47.826 3.71 0.00 40.88 4.30
55 56 3.821033 CGCCTTATATTTTGGGAAGGAGG 59.179 47.826 3.71 0.00 40.88 4.30
56 57 3.253432 GCGCCTTATATTTTGGGAAGGAG 59.747 47.826 0.00 1.55 40.88 3.69
57 58 3.219281 GCGCCTTATATTTTGGGAAGGA 58.781 45.455 0.00 0.00 40.88 3.36
58 59 2.031157 CGCGCCTTATATTTTGGGAAGG 60.031 50.000 0.00 0.00 41.26 3.46
59 60 2.875933 TCGCGCCTTATATTTTGGGAAG 59.124 45.455 0.00 0.00 0.00 3.46
60 61 2.920524 TCGCGCCTTATATTTTGGGAA 58.079 42.857 0.00 0.00 0.00 3.97
61 62 2.623878 TCGCGCCTTATATTTTGGGA 57.376 45.000 0.00 0.00 0.00 4.37
62 63 3.252215 TCAATCGCGCCTTATATTTTGGG 59.748 43.478 0.00 0.00 0.00 4.12
63 64 4.024048 AGTCAATCGCGCCTTATATTTTGG 60.024 41.667 0.00 0.00 0.00 3.28
64 65 5.095691 AGTCAATCGCGCCTTATATTTTG 57.904 39.130 0.00 0.00 0.00 2.44
65 66 5.751243 AAGTCAATCGCGCCTTATATTTT 57.249 34.783 0.00 0.00 0.00 1.82
66 67 5.510671 CAAAGTCAATCGCGCCTTATATTT 58.489 37.500 0.00 0.00 0.00 1.40
67 68 4.554723 GCAAAGTCAATCGCGCCTTATATT 60.555 41.667 0.00 0.00 0.00 1.28
68 69 3.058914 GCAAAGTCAATCGCGCCTTATAT 60.059 43.478 0.00 0.00 0.00 0.86
69 70 2.286833 GCAAAGTCAATCGCGCCTTATA 59.713 45.455 0.00 0.00 0.00 0.98
70 71 1.064060 GCAAAGTCAATCGCGCCTTAT 59.936 47.619 0.00 0.00 0.00 1.73
71 72 0.446222 GCAAAGTCAATCGCGCCTTA 59.554 50.000 0.00 0.00 0.00 2.69
72 73 1.210155 GCAAAGTCAATCGCGCCTT 59.790 52.632 0.00 0.00 0.00 4.35
73 74 1.308069 ATGCAAAGTCAATCGCGCCT 61.308 50.000 0.00 0.00 0.00 5.52
74 75 1.135699 CATGCAAAGTCAATCGCGCC 61.136 55.000 0.00 0.00 0.00 6.53
75 76 1.135699 CCATGCAAAGTCAATCGCGC 61.136 55.000 0.00 0.00 0.00 6.86
76 77 0.168788 ACCATGCAAAGTCAATCGCG 59.831 50.000 0.00 0.00 0.00 5.87
77 78 1.470098 AGACCATGCAAAGTCAATCGC 59.530 47.619 18.49 0.00 35.38 4.58
78 79 3.837213 AAGACCATGCAAAGTCAATCG 57.163 42.857 18.49 0.00 35.38 3.34
79 80 5.125100 TCAAAGACCATGCAAAGTCAATC 57.875 39.130 18.49 0.00 35.38 2.67
80 81 5.011329 ACATCAAAGACCATGCAAAGTCAAT 59.989 36.000 18.49 7.00 35.38 2.57
81 82 4.341806 ACATCAAAGACCATGCAAAGTCAA 59.658 37.500 18.49 4.90 35.38 3.18
82 83 3.890756 ACATCAAAGACCATGCAAAGTCA 59.109 39.130 18.49 2.00 35.38 3.41
83 84 4.510038 ACATCAAAGACCATGCAAAGTC 57.490 40.909 10.66 10.66 0.00 3.01
84 85 4.083324 CGTACATCAAAGACCATGCAAAGT 60.083 41.667 0.00 0.00 0.00 2.66
85 86 4.154015 TCGTACATCAAAGACCATGCAAAG 59.846 41.667 0.00 0.00 0.00 2.77
86 87 4.068599 TCGTACATCAAAGACCATGCAAA 58.931 39.130 0.00 0.00 0.00 3.68
87 88 3.669536 TCGTACATCAAAGACCATGCAA 58.330 40.909 0.00 0.00 0.00 4.08
88 89 3.326836 TCGTACATCAAAGACCATGCA 57.673 42.857 0.00 0.00 0.00 3.96
89 90 4.882671 ATTCGTACATCAAAGACCATGC 57.117 40.909 0.00 0.00 0.00 4.06
90 91 6.742718 GTCAAATTCGTACATCAAAGACCATG 59.257 38.462 0.00 0.00 0.00 3.66
91 92 6.128007 GGTCAAATTCGTACATCAAAGACCAT 60.128 38.462 13.47 0.00 40.99 3.55
92 93 5.180492 GGTCAAATTCGTACATCAAAGACCA 59.820 40.000 13.47 0.00 40.99 4.02
93 94 5.180492 TGGTCAAATTCGTACATCAAAGACC 59.820 40.000 12.14 12.14 41.53 3.85
94 95 6.073222 AGTGGTCAAATTCGTACATCAAAGAC 60.073 38.462 0.00 0.00 0.00 3.01
95 96 5.995282 AGTGGTCAAATTCGTACATCAAAGA 59.005 36.000 0.00 0.00 0.00 2.52
96 97 6.241207 AGTGGTCAAATTCGTACATCAAAG 57.759 37.500 0.00 0.00 0.00 2.77
97 98 7.731882 TTAGTGGTCAAATTCGTACATCAAA 57.268 32.000 0.00 0.00 0.00 2.69
98 99 7.915293 ATTAGTGGTCAAATTCGTACATCAA 57.085 32.000 0.00 0.00 0.00 2.57
133 134 9.950680 CCATTTATAAATGTTCAGTCCATGTAC 57.049 33.333 28.10 0.00 43.24 2.90
134 135 8.629158 GCCATTTATAAATGTTCAGTCCATGTA 58.371 33.333 28.10 0.00 43.24 2.29
135 136 7.123997 TGCCATTTATAAATGTTCAGTCCATGT 59.876 33.333 28.10 0.00 43.24 3.21
136 137 7.490840 TGCCATTTATAAATGTTCAGTCCATG 58.509 34.615 28.10 14.77 43.24 3.66
137 138 7.658525 TGCCATTTATAAATGTTCAGTCCAT 57.341 32.000 28.10 0.00 43.24 3.41
138 139 7.341512 TGATGCCATTTATAAATGTTCAGTCCA 59.658 33.333 28.10 20.76 43.24 4.02
139 140 7.715657 TGATGCCATTTATAAATGTTCAGTCC 58.284 34.615 28.10 19.28 43.24 3.85
140 141 9.403110 GATGATGCCATTTATAAATGTTCAGTC 57.597 33.333 28.10 22.00 43.24 3.51
141 142 8.077991 CGATGATGCCATTTATAAATGTTCAGT 58.922 33.333 28.10 18.49 43.24 3.41
142 143 8.077991 ACGATGATGCCATTTATAAATGTTCAG 58.922 33.333 28.10 19.62 43.24 3.02
143 144 7.939782 ACGATGATGCCATTTATAAATGTTCA 58.060 30.769 28.10 25.58 43.24 3.18
149 150 9.891828 GACAAATACGATGATGCCATTTATAAA 57.108 29.630 0.00 0.00 32.09 1.40
150 151 9.283768 AGACAAATACGATGATGCCATTTATAA 57.716 29.630 0.00 0.00 32.09 0.98
151 152 8.846943 AGACAAATACGATGATGCCATTTATA 57.153 30.769 0.00 0.00 32.09 0.98
152 153 7.750229 AGACAAATACGATGATGCCATTTAT 57.250 32.000 0.00 0.00 32.09 1.40
153 154 7.416817 CAAGACAAATACGATGATGCCATTTA 58.583 34.615 0.00 0.00 32.09 1.40
154 155 6.267817 CAAGACAAATACGATGATGCCATTT 58.732 36.000 0.00 0.00 32.09 2.32
155 156 5.734220 GCAAGACAAATACGATGATGCCATT 60.734 40.000 0.00 0.00 32.09 3.16
156 157 4.261322 GCAAGACAAATACGATGATGCCAT 60.261 41.667 0.00 0.00 35.29 4.40
157 158 3.065233 GCAAGACAAATACGATGATGCCA 59.935 43.478 0.00 0.00 0.00 4.92
158 159 3.065233 TGCAAGACAAATACGATGATGCC 59.935 43.478 0.00 0.00 0.00 4.40
159 160 4.277257 TGCAAGACAAATACGATGATGC 57.723 40.909 0.00 0.00 0.00 3.91
230 231 7.589954 GCACAACTTTGACTATTATTTTCACGT 59.410 33.333 0.00 0.00 0.00 4.49
231 232 7.589587 TGCACAACTTTGACTATTATTTTCACG 59.410 33.333 0.00 0.00 0.00 4.35
232 233 8.795786 TGCACAACTTTGACTATTATTTTCAC 57.204 30.769 0.00 0.00 0.00 3.18
233 234 7.594758 GCTGCACAACTTTGACTATTATTTTCA 59.405 33.333 0.00 0.00 0.00 2.69
234 235 7.594758 TGCTGCACAACTTTGACTATTATTTTC 59.405 33.333 0.00 0.00 0.00 2.29
235 236 7.432869 TGCTGCACAACTTTGACTATTATTTT 58.567 30.769 0.00 0.00 0.00 1.82
236 237 6.980593 TGCTGCACAACTTTGACTATTATTT 58.019 32.000 0.00 0.00 0.00 1.40
237 238 6.573664 TGCTGCACAACTTTGACTATTATT 57.426 33.333 0.00 0.00 0.00 1.40
238 239 6.573664 TTGCTGCACAACTTTGACTATTAT 57.426 33.333 0.00 0.00 31.73 1.28
239 240 6.262049 TCTTTGCTGCACAACTTTGACTATTA 59.738 34.615 0.00 0.00 38.23 0.98
240 241 4.916983 TTGCTGCACAACTTTGACTATT 57.083 36.364 0.00 0.00 31.73 1.73
241 242 4.580167 TCTTTGCTGCACAACTTTGACTAT 59.420 37.500 0.00 0.00 38.23 2.12
242 243 3.944650 TCTTTGCTGCACAACTTTGACTA 59.055 39.130 0.00 0.00 38.23 2.59
243 244 2.754552 TCTTTGCTGCACAACTTTGACT 59.245 40.909 0.00 0.00 38.23 3.41
244 245 2.854185 GTCTTTGCTGCACAACTTTGAC 59.146 45.455 0.00 0.00 38.23 3.18
245 246 2.159254 GGTCTTTGCTGCACAACTTTGA 60.159 45.455 0.00 0.00 38.23 2.69
246 247 2.195922 GGTCTTTGCTGCACAACTTTG 58.804 47.619 0.00 0.00 38.23 2.77
247 248 1.824230 TGGTCTTTGCTGCACAACTTT 59.176 42.857 0.00 0.00 38.23 2.66
248 249 1.473258 TGGTCTTTGCTGCACAACTT 58.527 45.000 0.00 0.00 38.23 2.66
249 250 1.473258 TTGGTCTTTGCTGCACAACT 58.527 45.000 0.00 0.00 38.23 3.16
250 251 2.292103 TTTGGTCTTTGCTGCACAAC 57.708 45.000 0.00 0.42 38.23 3.32
251 252 3.325293 TTTTTGGTCTTTGCTGCACAA 57.675 38.095 0.00 0.00 36.13 3.33
268 269 1.111277 AAGGCGCCAGTTGACTTTTT 58.889 45.000 31.54 6.84 0.00 1.94
269 270 1.975660 TAAGGCGCCAGTTGACTTTT 58.024 45.000 31.54 13.27 0.00 2.27
270 271 2.200373 ATAAGGCGCCAGTTGACTTT 57.800 45.000 31.54 14.07 0.00 2.66
271 272 3.560636 ATATAAGGCGCCAGTTGACTT 57.439 42.857 31.54 14.88 0.00 3.01
272 273 3.560636 AATATAAGGCGCCAGTTGACT 57.439 42.857 31.54 1.71 0.00 3.41
273 274 4.351192 CAAAATATAAGGCGCCAGTTGAC 58.649 43.478 31.54 0.00 0.00 3.18
274 275 3.380004 CCAAAATATAAGGCGCCAGTTGA 59.620 43.478 31.54 10.09 0.00 3.18
275 276 3.490761 CCCAAAATATAAGGCGCCAGTTG 60.491 47.826 31.54 19.02 0.00 3.16
276 277 2.693074 CCCAAAATATAAGGCGCCAGTT 59.307 45.455 31.54 18.15 0.00 3.16
277 278 2.092103 TCCCAAAATATAAGGCGCCAGT 60.092 45.455 31.54 18.99 0.00 4.00
278 279 2.582052 TCCCAAAATATAAGGCGCCAG 58.418 47.619 31.54 6.07 0.00 4.85
279 280 2.738587 TCCCAAAATATAAGGCGCCA 57.261 45.000 31.54 9.64 0.00 5.69
280 281 2.296190 CCTTCCCAAAATATAAGGCGCC 59.704 50.000 21.89 21.89 32.66 6.53
281 282 3.219281 TCCTTCCCAAAATATAAGGCGC 58.781 45.455 0.00 0.00 38.70 6.53
282 283 3.821033 CCTCCTTCCCAAAATATAAGGCG 59.179 47.826 0.00 0.00 38.70 5.52
283 284 4.141018 TCCCTCCTTCCCAAAATATAAGGC 60.141 45.833 0.00 0.00 38.70 4.35
284 285 5.134509 ACTCCCTCCTTCCCAAAATATAAGG 59.865 44.000 0.00 0.00 39.93 2.69
285 286 6.267492 ACTCCCTCCTTCCCAAAATATAAG 57.733 41.667 0.00 0.00 0.00 1.73
286 287 7.964730 ATACTCCCTCCTTCCCAAAATATAA 57.035 36.000 0.00 0.00 0.00 0.98
287 288 9.643778 AATATACTCCCTCCTTCCCAAAATATA 57.356 33.333 0.00 0.00 0.00 0.86
288 289 8.394040 CAATATACTCCCTCCTTCCCAAAATAT 58.606 37.037 0.00 0.00 0.00 1.28
289 290 7.202279 CCAATATACTCCCTCCTTCCCAAAATA 60.202 40.741 0.00 0.00 0.00 1.40
290 291 6.412024 CCAATATACTCCCTCCTTCCCAAAAT 60.412 42.308 0.00 0.00 0.00 1.82
291 292 5.103686 CCAATATACTCCCTCCTTCCCAAAA 60.104 44.000 0.00 0.00 0.00 2.44
292 293 4.415512 CCAATATACTCCCTCCTTCCCAAA 59.584 45.833 0.00 0.00 0.00 3.28
293 294 3.980698 CCAATATACTCCCTCCTTCCCAA 59.019 47.826 0.00 0.00 0.00 4.12
294 295 3.050564 ACCAATATACTCCCTCCTTCCCA 60.051 47.826 0.00 0.00 0.00 4.37
295 296 3.599348 ACCAATATACTCCCTCCTTCCC 58.401 50.000 0.00 0.00 0.00 3.97
296 297 5.189934 CCATACCAATATACTCCCTCCTTCC 59.810 48.000 0.00 0.00 0.00 3.46
297 298 5.785940 ACCATACCAATATACTCCCTCCTTC 59.214 44.000 0.00 0.00 0.00 3.46
298 299 5.548056 CACCATACCAATATACTCCCTCCTT 59.452 44.000 0.00 0.00 0.00 3.36
299 300 5.094387 CACCATACCAATATACTCCCTCCT 58.906 45.833 0.00 0.00 0.00 3.69
300 301 5.046520 GTCACCATACCAATATACTCCCTCC 60.047 48.000 0.00 0.00 0.00 4.30
301 302 5.542635 TGTCACCATACCAATATACTCCCTC 59.457 44.000 0.00 0.00 0.00 4.30
302 303 5.473273 TGTCACCATACCAATATACTCCCT 58.527 41.667 0.00 0.00 0.00 4.20
303 304 5.818678 TGTCACCATACCAATATACTCCC 57.181 43.478 0.00 0.00 0.00 4.30
304 305 5.643777 GCATGTCACCATACCAATATACTCC 59.356 44.000 0.00 0.00 0.00 3.85
305 306 6.467677 AGCATGTCACCATACCAATATACTC 58.532 40.000 0.00 0.00 0.00 2.59
306 307 6.439636 AGCATGTCACCATACCAATATACT 57.560 37.500 0.00 0.00 0.00 2.12
307 308 6.486657 ACAAGCATGTCACCATACCAATATAC 59.513 38.462 0.00 0.00 33.41 1.47
318 319 3.749226 TGAATGTACAAGCATGTCACCA 58.251 40.909 0.00 0.00 41.05 4.17
418 419 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
419 420 8.605746 TGAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
422 423 9.233232 GCTTGAAAAACGTTCTTATATTATGGG 57.767 33.333 0.00 0.00 0.00 4.00
431 432 9.654417 GTTAACATAGCTTGAAAAACGTTCTTA 57.346 29.630 0.00 0.00 0.00 2.10
432 433 8.403236 AGTTAACATAGCTTGAAAAACGTTCTT 58.597 29.630 8.61 0.00 0.00 2.52
433 434 7.927048 AGTTAACATAGCTTGAAAAACGTTCT 58.073 30.769 8.61 0.00 0.00 3.01
435 436 8.335256 CAAGTTAACATAGCTTGAAAAACGTT 57.665 30.769 8.61 0.00 46.07 3.99
436 437 7.908193 CAAGTTAACATAGCTTGAAAAACGT 57.092 32.000 8.61 0.00 46.07 3.99
444 445 7.908193 ACGTTTTTCAAGTTAACATAGCTTG 57.092 32.000 8.61 3.39 45.01 4.01
446 447 7.927048 AGAACGTTTTTCAAGTTAACATAGCT 58.073 30.769 8.61 0.00 0.00 3.32
447 448 8.556517 AAGAACGTTTTTCAAGTTAACATAGC 57.443 30.769 8.61 0.00 0.00 2.97
463 464 8.587608 TCCGTCCCATATAATATAAGAACGTTT 58.412 33.333 0.46 0.00 0.00 3.60
464 465 8.125978 TCCGTCCCATATAATATAAGAACGTT 57.874 34.615 0.00 0.00 0.00 3.99
465 466 7.147949 CCTCCGTCCCATATAATATAAGAACGT 60.148 40.741 8.43 0.00 0.00 3.99
466 467 7.201145 CCTCCGTCCCATATAATATAAGAACG 58.799 42.308 0.00 0.00 0.00 3.95
467 468 7.343833 TCCCTCCGTCCCATATAATATAAGAAC 59.656 40.741 0.00 0.00 0.00 3.01
468 469 7.424172 TCCCTCCGTCCCATATAATATAAGAA 58.576 38.462 0.00 0.00 0.00 2.52
469 470 6.988725 TCCCTCCGTCCCATATAATATAAGA 58.011 40.000 0.00 0.00 0.00 2.10
470 471 6.839657 ACTCCCTCCGTCCCATATAATATAAG 59.160 42.308 0.00 0.00 0.00 1.73
471 472 6.748969 ACTCCCTCCGTCCCATATAATATAA 58.251 40.000 0.00 0.00 0.00 0.98
472 473 6.351317 ACTCCCTCCGTCCCATATAATATA 57.649 41.667 0.00 0.00 0.00 0.86
473 474 5.222278 ACTCCCTCCGTCCCATATAATAT 57.778 43.478 0.00 0.00 0.00 1.28
474 475 4.687262 ACTCCCTCCGTCCCATATAATA 57.313 45.455 0.00 0.00 0.00 0.98
475 476 3.562108 ACTCCCTCCGTCCCATATAAT 57.438 47.619 0.00 0.00 0.00 1.28
476 477 4.687262 ATACTCCCTCCGTCCCATATAA 57.313 45.455 0.00 0.00 0.00 0.98
477 478 4.687262 AATACTCCCTCCGTCCCATATA 57.313 45.455 0.00 0.00 0.00 0.86
478 479 3.562108 AATACTCCCTCCGTCCCATAT 57.438 47.619 0.00 0.00 0.00 1.78
479 480 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
480 481 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
481 482 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
525 526 7.917505 CCTATTTTGAATGAACTCATTAGCACC 59.082 37.037 4.94 0.00 45.72 5.01
549 637 7.195474 AGACAGCCTATAGATCCAAATATCCT 58.805 38.462 0.00 0.00 0.00 3.24
594 682 7.865706 TGAAATCTCTAAAAGGGCTTATGTC 57.134 36.000 0.00 0.00 0.00 3.06
643 732 7.221067 GTGAATCTACACTCTAAAATCCGTCTG 59.779 40.741 0.00 0.00 37.73 3.51
692 781 4.783227 AGCCCTTTTAGAGATTCCACTACA 59.217 41.667 0.00 0.00 0.00 2.74
696 785 8.926092 AATATAAGCCCTTTTAGAGATTCCAC 57.074 34.615 0.00 0.00 0.00 4.02
766 857 4.335315 TGAAGTCAAAACTGCCAGTTGTAG 59.665 41.667 11.51 4.45 38.66 2.74
791 882 6.194967 TCTAATATCAGTCAGGTTGGACAGA 58.805 40.000 0.00 0.00 40.29 3.41
827 921 8.556194 GTTTTAAGCTGGAAAACAATAAAAGGG 58.444 33.333 22.97 0.00 43.30 3.95
833 927 9.660180 ACAAAAGTTTTAAGCTGGAAAACAATA 57.340 25.926 26.75 0.00 45.25 1.90
834 928 8.560355 ACAAAAGTTTTAAGCTGGAAAACAAT 57.440 26.923 26.75 17.70 45.25 2.71
835 929 7.971183 ACAAAAGTTTTAAGCTGGAAAACAA 57.029 28.000 26.75 1.61 45.25 2.83
968 1066 7.950496 GTCGTAAGTGTGCTTAGAATTTAACAG 59.050 37.037 0.00 0.00 37.82 3.16
986 1084 4.545610 CAATGCCATTTTGTGTCGTAAGT 58.454 39.130 0.00 0.00 39.48 2.24
990 1088 1.340889 AGCAATGCCATTTTGTGTCGT 59.659 42.857 0.00 0.00 0.00 4.34
991 1089 2.068837 AGCAATGCCATTTTGTGTCG 57.931 45.000 0.00 0.00 0.00 4.35
1043 1143 1.679311 CTGGCAGGGCAACTACTCA 59.321 57.895 6.61 0.00 0.00 3.41
1075 1175 2.195727 TCCAGGTGACAATCCAGCATA 58.804 47.619 0.00 0.00 37.04 3.14
1130 1245 4.811024 TGTGCAAACTAACTGTCTCTTGAG 59.189 41.667 0.00 0.00 0.00 3.02
1158 1273 3.433031 CGGAAATACATGAACCCAGGCTA 60.433 47.826 0.00 0.00 0.00 3.93
1288 1415 6.098409 TCAGTGATTCTATTACCCTTCTGGAC 59.902 42.308 0.00 0.00 38.00 4.02
1393 1541 4.566545 TGTTATTGACAGTTGCAAGGTG 57.433 40.909 0.00 2.89 33.40 4.00
1481 1629 1.602323 TCGTGGTGGCATTGGGAAC 60.602 57.895 0.00 0.00 0.00 3.62
1508 1656 2.935238 GCTTGGCGACTAATGTGAAGGA 60.935 50.000 0.00 0.00 0.00 3.36
1544 1692 4.449743 GCGTGTGTCCTAATTACTGACAAA 59.550 41.667 12.42 6.83 40.41 2.83
1616 1764 0.963962 ATGGCCTTTGTTGACAGCAG 59.036 50.000 3.32 0.00 0.00 4.24
1654 1802 6.385649 ACACGACAACCAAATTTACTGAAT 57.614 33.333 0.00 0.00 0.00 2.57
1696 1844 2.441023 TCGCGACTCGAAAACCATG 58.559 52.632 3.71 0.00 45.36 3.66
1697 1845 4.979204 TCGCGACTCGAAAACCAT 57.021 50.000 3.71 0.00 45.36 3.55
1728 1876 2.101965 CGAGTCGCTGCTCCAGAG 59.898 66.667 0.00 0.00 32.44 3.35
1729 1877 3.443925 CCGAGTCGCTGCTCCAGA 61.444 66.667 7.12 0.00 32.44 3.86
1730 1878 2.880719 CTTCCGAGTCGCTGCTCCAG 62.881 65.000 7.12 0.00 32.11 3.86
1731 1879 2.989253 TTCCGAGTCGCTGCTCCA 60.989 61.111 7.12 0.00 32.11 3.86
1732 1880 2.202676 CTTCCGAGTCGCTGCTCC 60.203 66.667 7.12 0.00 32.11 4.70
1733 1881 0.800300 CTTCTTCCGAGTCGCTGCTC 60.800 60.000 7.12 0.00 0.00 4.26
1734 1882 1.214062 CTTCTTCCGAGTCGCTGCT 59.786 57.895 7.12 0.00 0.00 4.24
1735 1883 1.073768 GACTTCTTCCGAGTCGCTGC 61.074 60.000 7.12 0.00 34.76 5.25
1736 1884 3.022981 GACTTCTTCCGAGTCGCTG 57.977 57.895 7.12 0.00 34.76 5.18
1743 1891 0.894184 ACAGGCTCGACTTCTTCCGA 60.894 55.000 0.00 0.00 0.00 4.55
1744 1892 0.734253 CACAGGCTCGACTTCTTCCG 60.734 60.000 0.00 0.00 0.00 4.30
1745 1893 0.318762 ACACAGGCTCGACTTCTTCC 59.681 55.000 0.00 0.00 0.00 3.46
1746 1894 1.795286 CAACACAGGCTCGACTTCTTC 59.205 52.381 0.00 0.00 0.00 2.87
1747 1895 1.139058 ACAACACAGGCTCGACTTCTT 59.861 47.619 0.00 0.00 0.00 2.52
1748 1896 0.753262 ACAACACAGGCTCGACTTCT 59.247 50.000 0.00 0.00 0.00 2.85
1749 1897 0.861837 CACAACACAGGCTCGACTTC 59.138 55.000 0.00 0.00 0.00 3.01
1750 1898 0.464036 TCACAACACAGGCTCGACTT 59.536 50.000 0.00 0.00 0.00 3.01
1751 1899 0.249489 GTCACAACACAGGCTCGACT 60.249 55.000 0.00 0.00 0.00 4.18
1752 1900 0.249489 AGTCACAACACAGGCTCGAC 60.249 55.000 0.00 0.00 0.00 4.20
1753 1901 1.269723 CTAGTCACAACACAGGCTCGA 59.730 52.381 0.00 0.00 0.00 4.04
1754 1902 1.000163 ACTAGTCACAACACAGGCTCG 60.000 52.381 0.00 0.00 0.00 5.03
1755 1903 2.678324 GACTAGTCACAACACAGGCTC 58.322 52.381 18.20 0.00 0.00 4.70
1756 1904 1.000163 CGACTAGTCACAACACAGGCT 60.000 52.381 22.37 0.00 0.00 4.58
1757 1905 1.419374 CGACTAGTCACAACACAGGC 58.581 55.000 22.37 0.00 0.00 4.85
1758 1906 1.419374 GCGACTAGTCACAACACAGG 58.581 55.000 22.37 4.17 0.00 4.00
1759 1907 1.053048 CGCGACTAGTCACAACACAG 58.947 55.000 22.37 4.87 0.00 3.66
1760 1908 0.664224 TCGCGACTAGTCACAACACA 59.336 50.000 22.37 0.00 0.00 3.72
1761 1909 1.050767 GTCGCGACTAGTCACAACAC 58.949 55.000 31.12 7.53 0.00 3.32
1762 1910 0.949397 AGTCGCGACTAGTCACAACA 59.051 50.000 38.67 0.00 40.43 3.33
1763 1911 1.069432 TGAGTCGCGACTAGTCACAAC 60.069 52.381 39.33 24.54 42.66 3.32
1764 1912 1.197036 CTGAGTCGCGACTAGTCACAA 59.803 52.381 39.33 18.16 42.66 3.33
1765 1913 0.796927 CTGAGTCGCGACTAGTCACA 59.203 55.000 39.33 29.42 42.66 3.58
1766 1914 1.077123 TCTGAGTCGCGACTAGTCAC 58.923 55.000 39.33 26.64 42.66 3.67
1767 1915 2.025589 ATCTGAGTCGCGACTAGTCA 57.974 50.000 39.33 30.22 42.66 3.41
1768 1916 2.597971 CGAATCTGAGTCGCGACTAGTC 60.598 54.545 39.33 29.37 42.66 2.59
1769 1917 1.328069 CGAATCTGAGTCGCGACTAGT 59.672 52.381 39.33 24.70 42.66 2.57
1770 1918 2.011932 CGAATCTGAGTCGCGACTAG 57.988 55.000 39.33 31.42 42.66 2.57
1788 1936 1.128724 CAGCTTAGTGTCGACTCGCG 61.129 60.000 17.92 0.00 42.69 5.87
1789 1937 0.168348 TCAGCTTAGTGTCGACTCGC 59.832 55.000 17.92 11.93 33.21 5.03
1790 1938 1.465387 ACTCAGCTTAGTGTCGACTCG 59.535 52.381 17.92 1.95 33.21 4.18
1791 1939 3.125698 GACTCAGCTTAGTGTCGACTC 57.874 52.381 17.92 13.63 33.21 3.36
1796 1944 1.540267 TGGTCGACTCAGCTTAGTGTC 59.460 52.381 16.46 0.80 0.00 3.67
1797 1945 1.617322 TGGTCGACTCAGCTTAGTGT 58.383 50.000 16.46 0.00 0.00 3.55
1798 1946 2.949451 ATGGTCGACTCAGCTTAGTG 57.051 50.000 16.46 0.00 0.00 2.74
1799 1947 5.599999 AAATATGGTCGACTCAGCTTAGT 57.400 39.130 16.46 0.00 0.00 2.24
1800 1948 6.709643 CAAAAATATGGTCGACTCAGCTTAG 58.290 40.000 16.46 0.00 0.00 2.18
1801 1949 5.064707 GCAAAAATATGGTCGACTCAGCTTA 59.935 40.000 16.46 1.81 0.00 3.09
1802 1950 4.142600 GCAAAAATATGGTCGACTCAGCTT 60.143 41.667 16.46 6.75 0.00 3.74
1803 1951 3.375299 GCAAAAATATGGTCGACTCAGCT 59.625 43.478 16.46 0.87 0.00 4.24
1804 1952 3.685058 GCAAAAATATGGTCGACTCAGC 58.315 45.455 16.46 6.06 0.00 4.26
1805 1953 3.616821 TCGCAAAAATATGGTCGACTCAG 59.383 43.478 16.46 0.00 0.00 3.35
1806 1954 3.369756 GTCGCAAAAATATGGTCGACTCA 59.630 43.478 16.46 12.14 41.84 3.41
1807 1955 3.924610 GTCGCAAAAATATGGTCGACTC 58.075 45.455 16.46 6.30 41.84 3.36
1809 1957 3.369756 TGAGTCGCAAAAATATGGTCGAC 59.630 43.478 7.13 7.13 44.36 4.20
1810 1958 3.591023 TGAGTCGCAAAAATATGGTCGA 58.409 40.909 0.00 0.00 0.00 4.20
1811 1959 4.536364 ATGAGTCGCAAAAATATGGTCG 57.464 40.909 0.00 0.00 0.00 4.79
1812 1960 6.480320 AGTCTATGAGTCGCAAAAATATGGTC 59.520 38.462 0.00 0.00 0.00 4.02
1813 1961 6.349300 AGTCTATGAGTCGCAAAAATATGGT 58.651 36.000 0.00 0.00 0.00 3.55
1814 1962 6.851222 AGTCTATGAGTCGCAAAAATATGG 57.149 37.500 0.00 0.00 0.00 2.74
1815 1963 8.581057 ACTAGTCTATGAGTCGCAAAAATATG 57.419 34.615 0.00 0.00 0.00 1.78
1816 1964 8.804688 GACTAGTCTATGAGTCGCAAAAATAT 57.195 34.615 15.91 0.00 33.27 1.28
1863 2011 2.209838 TCATGGATTTCGAGTCGCTC 57.790 50.000 7.92 4.43 0.00 5.03
1864 2012 2.546795 GGATCATGGATTTCGAGTCGCT 60.547 50.000 7.92 0.00 0.00 4.93
1865 2013 1.795286 GGATCATGGATTTCGAGTCGC 59.205 52.381 7.92 0.00 0.00 5.19
1866 2014 3.097877 TGGATCATGGATTTCGAGTCG 57.902 47.619 6.09 6.09 0.00 4.18
1867 2015 5.788450 AGTATGGATCATGGATTTCGAGTC 58.212 41.667 0.00 0.00 0.00 3.36
1868 2016 5.815233 AGTATGGATCATGGATTTCGAGT 57.185 39.130 0.00 0.00 0.00 4.18
1869 2017 6.929625 AGTAGTATGGATCATGGATTTCGAG 58.070 40.000 0.00 0.00 0.00 4.04
1870 2018 6.918067 AGTAGTATGGATCATGGATTTCGA 57.082 37.500 0.00 0.00 0.00 3.71
1871 2019 7.831753 ACTAGTAGTATGGATCATGGATTTCG 58.168 38.462 0.00 0.00 0.00 3.46
1874 2022 9.830186 ACTTACTAGTAGTATGGATCATGGATT 57.170 33.333 21.15 1.04 32.11 3.01
1957 2106 8.184192 CAGACATACAAAGAACCAAATATCCAC 58.816 37.037 0.00 0.00 0.00 4.02
2045 2622 8.204836 AGACTCCGAAACATGTTTATAGCTAAT 58.795 33.333 23.33 5.32 32.11 1.73
2058 2672 8.340443 GTTTTAGTTTGTTAGACTCCGAAACAT 58.660 33.333 0.00 0.00 33.44 2.71
2086 2700 9.238368 CAAGGATTAGTTAGATTACCCAAACAA 57.762 33.333 0.00 0.00 0.00 2.83
2158 2772 1.623973 CGTCTCGGAGCCGTTTTTCC 61.624 60.000 8.96 0.00 40.74 3.13
2167 2781 0.384353 GCACAAAAACGTCTCGGAGC 60.384 55.000 0.00 0.00 0.00 4.70
2249 2863 2.048127 GGCGCCAGAAGACGTTCT 60.048 61.111 24.80 0.00 44.40 3.01
2339 2953 0.657659 CGTACAGAGCATAGTCGCCG 60.658 60.000 0.00 0.00 0.00 6.46
2363 2977 0.433492 CTACGAAGTCGCCAACAACG 59.567 55.000 0.00 0.00 43.93 4.10
2389 3003 3.948719 GTGCCGTTGGGGAGGTCA 61.949 66.667 0.00 0.00 38.47 4.02
2408 3022 3.435186 GAGTGAAAGGGGCAGCGC 61.435 66.667 0.00 0.00 0.00 5.92
2409 3023 1.377725 ATGAGTGAAAGGGGCAGCG 60.378 57.895 0.00 0.00 0.00 5.18
2410 3024 1.318158 CCATGAGTGAAAGGGGCAGC 61.318 60.000 0.00 0.00 0.00 5.25
2411 3025 0.038744 ACCATGAGTGAAAGGGGCAG 59.961 55.000 0.00 0.00 0.00 4.85
2412 3026 0.038166 GACCATGAGTGAAAGGGGCA 59.962 55.000 0.00 0.00 0.00 5.36
2413 3027 0.681243 GGACCATGAGTGAAAGGGGC 60.681 60.000 0.00 0.00 0.00 5.80
2414 3028 0.995024 AGGACCATGAGTGAAAGGGG 59.005 55.000 0.00 0.00 0.00 4.79
2415 3029 1.340405 CCAGGACCATGAGTGAAAGGG 60.340 57.143 0.00 0.00 0.00 3.95
2416 3030 1.630369 TCCAGGACCATGAGTGAAAGG 59.370 52.381 0.00 0.00 0.00 3.11
2417 3031 2.938756 GCTCCAGGACCATGAGTGAAAG 60.939 54.545 10.85 0.00 0.00 2.62
2418 3032 1.003580 GCTCCAGGACCATGAGTGAAA 59.996 52.381 10.85 0.00 0.00 2.69
2419 3033 0.615331 GCTCCAGGACCATGAGTGAA 59.385 55.000 10.85 0.00 0.00 3.18
2420 3034 0.545071 TGCTCCAGGACCATGAGTGA 60.545 55.000 10.85 0.00 0.00 3.41
2421 3035 0.392193 GTGCTCCAGGACCATGAGTG 60.392 60.000 10.85 0.00 0.00 3.51
2422 3036 1.892819 CGTGCTCCAGGACCATGAGT 61.893 60.000 10.85 0.00 32.36 3.41
2423 3037 1.153489 CGTGCTCCAGGACCATGAG 60.153 63.158 0.00 6.03 32.36 2.90
2424 3038 1.609210 TCGTGCTCCAGGACCATGA 60.609 57.895 2.80 2.80 32.36 3.07
2425 3039 1.448540 GTCGTGCTCCAGGACCATG 60.449 63.158 6.76 0.00 41.55 3.66
2426 3040 2.982130 GTCGTGCTCCAGGACCAT 59.018 61.111 6.76 0.00 41.55 3.55
2427 3041 3.680786 CGTCGTGCTCCAGGACCA 61.681 66.667 11.13 0.00 43.56 4.02
2428 3042 3.681835 ACGTCGTGCTCCAGGACC 61.682 66.667 0.00 0.00 43.56 4.46
2429 3043 2.430921 CACGTCGTGCTCCAGGAC 60.431 66.667 13.22 7.72 43.20 3.85
2452 3066 1.746991 CCGAGGCTGGAGGAAAAGC 60.747 63.158 0.00 0.00 38.76 3.51
2570 3184 3.148412 CACAACACTGGACATCCATGAA 58.852 45.455 0.00 0.00 46.46 2.57
2585 3199 2.123939 CCAGTGTGCCCCACAACA 60.124 61.111 0.00 0.00 46.28 3.33
2612 3226 3.064987 GCGAGCGAGGTCCTTAGCA 62.065 63.158 18.69 0.00 0.00 3.49
2703 3317 0.317603 ACGTGATATCGGTGCTACGC 60.318 55.000 10.03 0.00 35.17 4.42
2736 3351 3.357079 CTTCTGTGTGGCCGGTGC 61.357 66.667 1.90 0.00 0.00 5.01
2758 3373 4.731853 TCTGCCCGGGGATGGACA 62.732 66.667 25.28 9.56 0.00 4.02
2794 3409 2.381911 TCCTACATCCCTACGTTCCAC 58.618 52.381 0.00 0.00 0.00 4.02
2795 3410 2.762327 GTTCCTACATCCCTACGTTCCA 59.238 50.000 0.00 0.00 0.00 3.53
2796 3411 2.223665 CGTTCCTACATCCCTACGTTCC 60.224 54.545 0.00 0.00 0.00 3.62
2797 3412 2.223665 CCGTTCCTACATCCCTACGTTC 60.224 54.545 0.00 0.00 0.00 3.95
2798 3413 1.753073 CCGTTCCTACATCCCTACGTT 59.247 52.381 0.00 0.00 0.00 3.99
2799 3414 1.396653 CCGTTCCTACATCCCTACGT 58.603 55.000 0.00 0.00 0.00 3.57
2800 3415 0.031721 GCCGTTCCTACATCCCTACG 59.968 60.000 0.00 0.00 0.00 3.51
2801 3416 1.117150 TGCCGTTCCTACATCCCTAC 58.883 55.000 0.00 0.00 0.00 3.18
2802 3417 1.760613 CTTGCCGTTCCTACATCCCTA 59.239 52.381 0.00 0.00 0.00 3.53
2816 3431 2.434185 TGTTCGCCTAGCTTGCCG 60.434 61.111 0.00 0.00 0.00 5.69
2870 3485 1.977544 CTCCACTCGGGTCGACCTT 60.978 63.158 32.52 13.03 38.11 3.50
2874 3489 3.062466 CTGCTCCACTCGGGTCGA 61.062 66.667 0.00 0.00 38.11 4.20
2955 3570 6.099341 CCTTCTCTCTCTTTCTCAAACTAGC 58.901 44.000 0.00 0.00 0.00 3.42
2977 3592 2.591753 CCACGCATCCCATGACCT 59.408 61.111 0.00 0.00 0.00 3.85
3092 3707 6.533723 TGTTTGATAGCAAGTATAAGACACGG 59.466 38.462 0.00 0.00 35.04 4.94
3097 3712 8.100791 AGTGGTTGTTTGATAGCAAGTATAAGA 58.899 33.333 0.00 0.00 35.04 2.10
3347 3963 2.264813 CCATTTGATGCCGAAAGCTTG 58.735 47.619 0.00 0.00 44.23 4.01
3504 4161 4.020307 GGACACAAACATGGGAAATGGAAT 60.020 41.667 0.00 0.00 0.00 3.01
3584 4244 4.989875 ATGGTCCTCATATTCCCAGAAG 57.010 45.455 0.00 0.00 33.61 2.85
3632 4292 6.402222 ACGGGCATATGATAAAAAGCAAAAA 58.598 32.000 6.97 0.00 0.00 1.94
3633 4293 5.971763 ACGGGCATATGATAAAAAGCAAAA 58.028 33.333 6.97 0.00 0.00 2.44
3654 4314 3.440173 ACTGGGACTGCAAAAATGATACG 59.560 43.478 0.00 0.00 0.00 3.06
3727 4387 8.743099 GCAGAAAACAGTAAAATTCTGTGTAAC 58.257 33.333 13.87 0.00 46.56 2.50
4164 4834 6.030228 GGCAATAGTTTTCTACTTGTCATGC 58.970 40.000 0.00 0.00 38.33 4.06
4172 4842 5.548406 ACGACTTGGCAATAGTTTTCTACT 58.452 37.500 0.00 0.00 41.04 2.57
4190 4860 2.549754 CAATCAGCCAACAGAAACGACT 59.450 45.455 0.00 0.00 0.00 4.18
4213 4883 9.902684 AGCATAATCCCTTATGAAATAGATCTG 57.097 33.333 5.18 0.00 44.70 2.90
4302 4973 8.826710 CCACTTTGTAATTAATAGATCGCTGAA 58.173 33.333 0.00 0.00 0.00 3.02
4304 4975 7.072030 GCCACTTTGTAATTAATAGATCGCTG 58.928 38.462 0.00 0.00 0.00 5.18
4307 4978 9.950680 AAATGCCACTTTGTAATTAATAGATCG 57.049 29.630 0.00 0.00 0.00 3.69
4314 4985 9.039870 CAAACAGAAATGCCACTTTGTAATTAA 57.960 29.630 0.00 0.00 0.00 1.40
4315 4986 8.200792 ACAAACAGAAATGCCACTTTGTAATTA 58.799 29.630 0.00 0.00 30.70 1.40
4316 4987 7.047271 ACAAACAGAAATGCCACTTTGTAATT 58.953 30.769 0.00 0.00 30.70 1.40
4317 4988 6.581712 ACAAACAGAAATGCCACTTTGTAAT 58.418 32.000 0.00 0.00 30.70 1.89
4319 4990 5.590530 ACAAACAGAAATGCCACTTTGTA 57.409 34.783 0.00 0.00 30.70 2.41
4320 4991 4.470334 ACAAACAGAAATGCCACTTTGT 57.530 36.364 0.00 0.00 0.00 2.83
4323 4994 5.048713 GCTACTACAAACAGAAATGCCACTT 60.049 40.000 0.00 0.00 0.00 3.16
4324 4995 4.455877 GCTACTACAAACAGAAATGCCACT 59.544 41.667 0.00 0.00 0.00 4.00
4325 4996 4.215399 TGCTACTACAAACAGAAATGCCAC 59.785 41.667 0.00 0.00 0.00 5.01
4326 4997 4.393834 TGCTACTACAAACAGAAATGCCA 58.606 39.130 0.00 0.00 0.00 4.92
4327 4998 5.335127 CATGCTACTACAAACAGAAATGCC 58.665 41.667 0.00 0.00 0.00 4.40
4328 4999 5.106157 ACCATGCTACTACAAACAGAAATGC 60.106 40.000 0.00 0.00 0.00 3.56
4329 5000 6.072508 ACACCATGCTACTACAAACAGAAATG 60.073 38.462 0.00 0.00 0.00 2.32
4330 5001 6.003950 ACACCATGCTACTACAAACAGAAAT 58.996 36.000 0.00 0.00 0.00 2.17
4331 5002 5.373222 ACACCATGCTACTACAAACAGAAA 58.627 37.500 0.00 0.00 0.00 2.52
4332 5003 4.968259 ACACCATGCTACTACAAACAGAA 58.032 39.130 0.00 0.00 0.00 3.02
4333 5004 4.617253 ACACCATGCTACTACAAACAGA 57.383 40.909 0.00 0.00 0.00 3.41
4353 5024 8.546597 AGGTTCAAACAATTTTAATGGCATAC 57.453 30.769 0.00 0.00 0.00 2.39
4498 5169 3.002862 GCAAAAACGAAAATTTGTCCCCC 59.997 43.478 0.00 0.00 38.48 5.40
4502 5173 5.732185 CACCAAGCAAAAACGAAAATTTGTC 59.268 36.000 0.00 0.00 38.48 3.18
4507 5178 3.942539 GCACCAAGCAAAAACGAAAAT 57.057 38.095 0.00 0.00 44.79 1.82
4536 5207 1.021968 GGTCCGGTTGCCAATATCAC 58.978 55.000 0.00 0.00 0.00 3.06
4607 5278 6.380095 AACAAAGTAAGGTAATGAACGCAA 57.620 33.333 0.00 0.00 0.00 4.85
4608 5279 6.073112 GGTAACAAAGTAAGGTAATGAACGCA 60.073 38.462 0.00 0.00 0.00 5.24
4651 5322 4.006989 TGCGTAGGTATCATTTTTGCTGT 58.993 39.130 0.00 0.00 0.00 4.40
4677 5348 6.994421 AAGGGTCAACCAATACAAAAGATT 57.006 33.333 0.89 0.00 43.89 2.40
4678 5349 6.741240 GCAAAGGGTCAACCAATACAAAAGAT 60.741 38.462 0.89 0.00 43.89 2.40
4681 5352 4.407296 AGCAAAGGGTCAACCAATACAAAA 59.593 37.500 0.89 0.00 43.89 2.44
4727 5398 3.581755 TCGACAAGTACCATAACAGTGC 58.418 45.455 0.00 0.00 0.00 4.40
4746 5417 1.148310 ATCCGAGCTGTGTTTGTTCG 58.852 50.000 0.00 0.00 37.77 3.95
4757 5428 4.082245 CCCACAAAACATTTTATCCGAGCT 60.082 41.667 0.00 0.00 0.00 4.09
4795 5466 1.115467 CTGCACCTACTGGACTAGGG 58.885 60.000 0.00 0.00 38.13 3.53
4797 5468 1.407258 GAGCTGCACCTACTGGACTAG 59.593 57.143 1.02 0.00 37.04 2.57
4799 5470 1.261238 GGAGCTGCACCTACTGGACT 61.261 60.000 8.98 0.00 37.04 3.85
4807 5490 1.536418 TAGTGTGGGAGCTGCACCT 60.536 57.895 15.67 5.95 33.96 4.00
4888 5571 5.684550 AAAACTCAACGGAAATGACTACC 57.315 39.130 0.00 0.00 0.00 3.18
4913 5596 8.677300 GGATAAAACAGAACAGAGCATCAATAA 58.323 33.333 0.00 0.00 37.82 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.