Multiple sequence alignment - TraesCS2A01G466700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G466700 chr2A 100.000 3905 0 0 861 4765 711068501 711064597 0.000000e+00 7212.0
1 TraesCS2A01G466700 chr2A 100.000 638 0 0 1 638 711069361 711068724 0.000000e+00 1179.0
2 TraesCS2A01G466700 chr2A 87.358 791 82 14 2486 3266 710806209 710805427 0.000000e+00 891.0
3 TraesCS2A01G466700 chr2A 86.298 759 80 15 2498 3236 711052956 711052202 0.000000e+00 804.0
4 TraesCS2A01G466700 chr2A 84.080 804 59 28 3977 4760 711052072 711051318 0.000000e+00 712.0
5 TraesCS2A01G466700 chr2A 91.258 469 37 3 2045 2510 711066027 711065560 1.870000e-178 636.0
6 TraesCS2A01G466700 chr2A 91.258 469 37 3 3335 3802 711067317 711066852 1.870000e-178 636.0
7 TraesCS2A01G466700 chr2A 86.792 530 58 8 3803 4327 711053005 711052483 8.890000e-162 580.0
8 TraesCS2A01G466700 chr2A 88.511 470 43 7 3862 4328 710806192 710805731 4.170000e-155 558.0
9 TraesCS2A01G466700 chr2A 86.792 477 53 6 3854 4328 711066867 711066399 1.520000e-144 523.0
10 TraesCS2A01G466700 chr2A 92.000 50 3 1 3270 3318 711052189 711052140 8.560000e-08 69.4
11 TraesCS2A01G466700 chr2B 95.886 2844 90 12 861 3698 686820148 686817326 0.000000e+00 4578.0
12 TraesCS2A01G466700 chr2B 92.153 1389 66 19 2425 3802 685756289 685754933 0.000000e+00 1921.0
13 TraesCS2A01G466700 chr2B 89.643 1400 93 21 2425 3800 686057417 686056046 0.000000e+00 1735.0
14 TraesCS2A01G466700 chr2B 90.000 930 49 16 2851 3755 685823228 685822318 0.000000e+00 1162.0
15 TraesCS2A01G466700 chr2B 90.816 882 49 14 2045 2924 685822723 685821872 0.000000e+00 1151.0
16 TraesCS2A01G466700 chr2B 84.656 945 84 23 3857 4760 686055590 686054666 0.000000e+00 885.0
17 TraesCS2A01G466700 chr2B 89.720 642 53 5 2045 2685 685755396 685754767 0.000000e+00 808.0
18 TraesCS2A01G466700 chr2B 90.328 548 52 1 2045 2591 686056510 686055963 0.000000e+00 717.0
19 TraesCS2A01G466700 chr2B 92.902 479 16 4 4063 4541 686817329 686816869 0.000000e+00 680.0
20 TraesCS2A01G466700 chr2B 89.006 473 44 4 3335 3802 686818977 686818508 3.200000e-161 579.0
21 TraesCS2A01G466700 chr2B 87.368 475 51 3 3855 4328 686057346 686056880 1.950000e-148 536.0
22 TraesCS2A01G466700 chr2B 93.220 354 23 1 2510 2862 685273341 685272988 1.970000e-143 520.0
23 TraesCS2A01G466700 chr2B 92.329 365 28 0 2045 2409 686817690 686817326 1.970000e-143 520.0
24 TraesCS2A01G466700 chr2B 87.955 440 44 5 3854 4292 685822300 685821869 1.180000e-140 510.0
25 TraesCS2A01G466700 chr2B 86.134 476 56 5 3854 4328 686818523 686818057 5.500000e-139 505.0
26 TraesCS2A01G466700 chr2B 87.136 412 43 5 3918 4328 685756177 685755775 4.350000e-125 459.0
27 TraesCS2A01G466700 chr2B 88.472 373 41 2 3881 4251 685273329 685272957 2.620000e-122 449.0
28 TraesCS2A01G466700 chr2B 94.425 287 11 4 4482 4765 686816882 686816598 2.040000e-118 436.0
29 TraesCS2A01G466700 chr2B 80.449 312 33 17 2196 2496 685273746 685273452 3.740000e-51 213.0
30 TraesCS2A01G466700 chr2D 93.857 2979 113 30 861 3802 572075841 572072896 0.000000e+00 4423.0
31 TraesCS2A01G466700 chr2D 90.244 943 67 16 2045 2963 572073364 572072423 0.000000e+00 1208.0
32 TraesCS2A01G466700 chr2D 89.339 469 46 3 3335 3802 572074648 572074183 1.910000e-163 586.0
33 TraesCS2A01G466700 chr2D 85.150 532 61 12 3854 4370 572072911 572072383 3.270000e-146 529.0
34 TraesCS2A01G466700 chr2D 86.848 479 48 7 3854 4328 572074198 572073731 5.460000e-144 521.0
35 TraesCS2A01G466700 chr2D 85.714 294 15 4 1 267 572076938 572076645 7.800000e-73 285.0
36 TraesCS2A01G466700 chr2D 90.654 107 9 1 533 638 572075952 572075846 1.790000e-29 141.0
37 TraesCS2A01G466700 chrUn 98.214 56 1 0 3803 3858 313032387 313032442 1.090000e-16 99.0
38 TraesCS2A01G466700 chrUn 98.214 56 1 0 3803 3858 313036182 313036237 1.090000e-16 99.0
39 TraesCS2A01G466700 chrUn 98.214 56 1 0 3803 3858 327962858 327962913 1.090000e-16 99.0
40 TraesCS2A01G466700 chr4A 100.000 52 0 0 3803 3854 618267143 618267092 3.930000e-16 97.1
41 TraesCS2A01G466700 chr4A 94.915 59 2 1 3803 3861 714898209 714898152 1.830000e-14 91.6
42 TraesCS2A01G466700 chr3B 100.000 52 0 0 3803 3854 782261518 782261569 3.930000e-16 97.1
43 TraesCS2A01G466700 chr3B 100.000 51 0 0 3803 3853 782303332 782303382 1.410000e-15 95.3
44 TraesCS2A01G466700 chr7B 96.552 58 1 1 3803 3859 651410642 651410585 1.410000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G466700 chr2A 711064597 711069361 4764 True 2037.200000 7212 93.861600 1 4765 5 chr2A.!!$R3 4764
1 TraesCS2A01G466700 chr2A 710805427 710806209 782 True 724.500000 891 87.934500 2486 4328 2 chr2A.!!$R1 1842
2 TraesCS2A01G466700 chr2A 711051318 711053005 1687 True 541.350000 804 87.292500 2498 4760 4 chr2A.!!$R2 2262
3 TraesCS2A01G466700 chr2B 686816598 686820148 3550 True 1216.333333 4578 91.780333 861 4765 6 chr2B.!!$R5 3904
4 TraesCS2A01G466700 chr2B 685754767 685756289 1522 True 1062.666667 1921 89.669667 2045 4328 3 chr2B.!!$R2 2283
5 TraesCS2A01G466700 chr2B 686054666 686057417 2751 True 968.250000 1735 87.998750 2045 4760 4 chr2B.!!$R4 2715
6 TraesCS2A01G466700 chr2B 685821869 685823228 1359 True 941.000000 1162 89.590333 2045 4292 3 chr2B.!!$R3 2247
7 TraesCS2A01G466700 chr2B 685272957 685273746 789 True 394.000000 520 87.380333 2196 4251 3 chr2B.!!$R1 2055
8 TraesCS2A01G466700 chr2D 572072383 572076938 4555 True 1099.000000 4423 88.829429 1 4370 7 chr2D.!!$R1 4369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 894 0.101040 CAATTGGTTCGCGCCATGAT 59.899 50.0 0.00 0.00 38.48 2.45 F
1677 2166 0.100682 TCGAGAAGATGTACGCTGCC 59.899 55.0 0.00 0.00 0.00 4.85 F
3471 4108 0.330941 TGCTGATGTGGTAATGGCCA 59.669 50.0 8.56 8.56 35.93 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 2229 0.896940 CTGGAACTGGCAATGGCACT 60.897 55.000 5.05 0.0 43.71 4.40 R
3665 4306 1.304713 CATGGCCTCAGCACCCTTT 60.305 57.895 3.32 0.0 42.56 3.11 R
4714 6667 0.319900 ACGTCATCTCACACCAGCAC 60.320 55.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.048023 ACGGATCGCGTGGGTTCTA 61.048 57.895 5.77 0.00 0.00 2.10
78 83 2.044946 AGGCCGGCATTCAAGACC 60.045 61.111 30.85 7.16 0.00 3.85
79 84 2.361104 GGCCGGCATTCAAGACCA 60.361 61.111 30.85 0.00 0.00 4.02
116 123 3.076079 TCAGATCATGCTTTTCTGCCA 57.924 42.857 0.00 0.00 37.41 4.92
121 128 2.030371 TCATGCTTTTCTGCCACACAA 58.970 42.857 0.00 0.00 0.00 3.33
122 129 2.129607 CATGCTTTTCTGCCACACAAC 58.870 47.619 0.00 0.00 0.00 3.32
272 300 3.569902 GCATTTGCTGCCTTTGCC 58.430 55.556 0.00 0.00 45.66 4.52
273 301 2.036571 GCATTTGCTGCCTTTGCCC 61.037 57.895 0.00 0.00 45.66 5.36
274 302 1.675219 CATTTGCTGCCTTTGCCCT 59.325 52.632 0.00 0.00 36.33 5.19
275 303 0.390735 CATTTGCTGCCTTTGCCCTC 60.391 55.000 0.00 0.00 36.33 4.30
277 305 4.684134 TGCTGCCTTTGCCCTCCC 62.684 66.667 0.00 0.00 36.33 4.30
279 307 4.351054 CTGCCTTTGCCCTCCCGT 62.351 66.667 0.00 0.00 36.33 5.28
280 308 2.931105 TGCCTTTGCCCTCCCGTA 60.931 61.111 0.00 0.00 36.33 4.02
281 309 2.353573 GCCTTTGCCCTCCCGTAA 59.646 61.111 0.00 0.00 0.00 3.18
282 310 2.044555 GCCTTTGCCCTCCCGTAAC 61.045 63.158 0.00 0.00 0.00 2.50
283 311 1.377229 CCTTTGCCCTCCCGTAACA 59.623 57.895 0.00 0.00 0.00 2.41
284 312 0.676782 CCTTTGCCCTCCCGTAACAG 60.677 60.000 0.00 0.00 0.00 3.16
285 313 0.676782 CTTTGCCCTCCCGTAACAGG 60.677 60.000 0.00 0.00 0.00 4.00
286 314 1.128809 TTTGCCCTCCCGTAACAGGA 61.129 55.000 0.00 0.00 30.32 3.86
287 315 1.833787 TTGCCCTCCCGTAACAGGAC 61.834 60.000 0.00 0.00 30.32 3.85
288 316 2.890371 CCCTCCCGTAACAGGACG 59.110 66.667 0.00 0.00 42.55 4.79
289 317 2.183555 CCTCCCGTAACAGGACGC 59.816 66.667 0.00 0.00 41.56 5.19
290 318 2.642254 CCTCCCGTAACAGGACGCA 61.642 63.158 0.00 0.00 41.56 5.24
310 338 3.617045 GCAGTAAAATGCAGCATCCCAAA 60.617 43.478 8.77 0.00 45.77 3.28
317 345 2.037901 TGCAGCATCCCAAACTTCAAA 58.962 42.857 0.00 0.00 0.00 2.69
318 346 2.633967 TGCAGCATCCCAAACTTCAAAT 59.366 40.909 0.00 0.00 0.00 2.32
319 347 2.997986 GCAGCATCCCAAACTTCAAATG 59.002 45.455 0.00 0.00 0.00 2.32
320 348 2.997986 CAGCATCCCAAACTTCAAATGC 59.002 45.455 0.00 0.00 39.74 3.56
321 349 2.027837 AGCATCCCAAACTTCAAATGCC 60.028 45.455 0.00 0.00 40.18 4.40
322 350 2.027837 GCATCCCAAACTTCAAATGCCT 60.028 45.455 0.00 0.00 34.80 4.75
323 351 3.592059 CATCCCAAACTTCAAATGCCTG 58.408 45.455 0.00 0.00 0.00 4.85
324 352 2.676748 TCCCAAACTTCAAATGCCTGT 58.323 42.857 0.00 0.00 0.00 4.00
325 353 3.838565 TCCCAAACTTCAAATGCCTGTA 58.161 40.909 0.00 0.00 0.00 2.74
326 354 3.572255 TCCCAAACTTCAAATGCCTGTAC 59.428 43.478 0.00 0.00 0.00 2.90
327 355 3.564511 CCAAACTTCAAATGCCTGTACG 58.435 45.455 0.00 0.00 0.00 3.67
328 356 3.004315 CCAAACTTCAAATGCCTGTACGT 59.996 43.478 0.00 0.00 0.00 3.57
329 357 4.499019 CCAAACTTCAAATGCCTGTACGTT 60.499 41.667 0.00 0.00 0.00 3.99
330 358 3.896648 ACTTCAAATGCCTGTACGTTG 57.103 42.857 0.00 0.00 0.00 4.10
331 359 2.552315 ACTTCAAATGCCTGTACGTTGG 59.448 45.455 0.00 0.00 0.00 3.77
337 365 3.697747 CCTGTACGTTGGCCCGGA 61.698 66.667 0.73 0.00 0.00 5.14
338 366 2.344500 CTGTACGTTGGCCCGGAA 59.656 61.111 0.73 0.00 0.00 4.30
339 367 1.301874 CTGTACGTTGGCCCGGAAA 60.302 57.895 0.73 0.00 0.00 3.13
340 368 1.571215 CTGTACGTTGGCCCGGAAAC 61.571 60.000 0.73 3.57 0.00 2.78
341 369 1.597578 GTACGTTGGCCCGGAAACA 60.598 57.895 0.73 0.00 0.00 2.83
342 370 1.147824 TACGTTGGCCCGGAAACAA 59.852 52.632 0.73 1.54 0.00 2.83
343 371 0.250814 TACGTTGGCCCGGAAACAAT 60.251 50.000 0.73 0.00 0.00 2.71
344 372 1.080839 CGTTGGCCCGGAAACAATG 60.081 57.895 0.73 6.79 0.00 2.82
345 373 1.374125 GTTGGCCCGGAAACAATGC 60.374 57.895 0.73 0.00 0.00 3.56
346 374 2.925262 TTGGCCCGGAAACAATGCG 61.925 57.895 0.73 0.00 43.28 4.73
361 806 7.012421 GGAAACAATGCGAGGTAAAGAATCTAT 59.988 37.037 0.00 0.00 0.00 1.98
363 808 6.821388 ACAATGCGAGGTAAAGAATCTATCT 58.179 36.000 0.00 0.00 41.32 1.98
364 809 7.952671 ACAATGCGAGGTAAAGAATCTATCTA 58.047 34.615 0.00 0.00 37.42 1.98
365 810 8.421784 ACAATGCGAGGTAAAGAATCTATCTAA 58.578 33.333 0.00 0.00 37.42 2.10
366 811 9.261180 CAATGCGAGGTAAAGAATCTATCTAAA 57.739 33.333 0.00 0.00 37.42 1.85
415 860 3.690628 TCATCACTGGATTCGTGTACGTA 59.309 43.478 4.20 0.00 40.80 3.57
418 863 2.421073 CACTGGATTCGTGTACGTAGGA 59.579 50.000 0.00 0.00 40.80 2.94
419 864 2.681848 ACTGGATTCGTGTACGTAGGAG 59.318 50.000 0.00 0.00 40.80 3.69
420 865 2.019249 TGGATTCGTGTACGTAGGAGG 58.981 52.381 0.00 0.00 40.80 4.30
421 866 1.268948 GGATTCGTGTACGTAGGAGGC 60.269 57.143 0.00 0.00 40.80 4.70
423 868 2.257286 TTCGTGTACGTAGGAGGCGC 62.257 60.000 0.00 0.00 40.80 6.53
424 869 2.103736 GTGTACGTAGGAGGCGCC 59.896 66.667 21.89 21.89 0.00 6.53
426 871 3.204827 GTACGTAGGAGGCGCCGA 61.205 66.667 23.20 4.85 43.43 5.54
427 872 2.438254 TACGTAGGAGGCGCCGAA 60.438 61.111 23.20 4.69 43.43 4.30
428 873 2.475466 TACGTAGGAGGCGCCGAAG 61.475 63.158 23.20 12.55 43.43 3.79
445 891 1.876497 AAGCAATTGGTTCGCGCCAT 61.876 50.000 16.92 0.00 38.48 4.40
446 892 2.160221 GCAATTGGTTCGCGCCATG 61.160 57.895 7.72 1.34 38.48 3.66
447 893 1.505807 CAATTGGTTCGCGCCATGA 59.494 52.632 0.00 0.00 38.48 3.07
448 894 0.101040 CAATTGGTTCGCGCCATGAT 59.899 50.000 0.00 0.00 38.48 2.45
449 895 0.101040 AATTGGTTCGCGCCATGATG 59.899 50.000 0.00 0.00 38.48 3.07
450 896 0.747644 ATTGGTTCGCGCCATGATGA 60.748 50.000 0.00 0.00 38.48 2.92
451 897 1.368345 TTGGTTCGCGCCATGATGAG 61.368 55.000 0.00 0.00 38.48 2.90
452 898 1.521457 GGTTCGCGCCATGATGAGA 60.521 57.895 0.00 0.00 0.00 3.27
456 902 2.308769 CGCGCCATGATGAGAGAGC 61.309 63.158 0.00 0.00 0.00 4.09
482 928 0.749818 TGCAAGTCAAAGTTCCCGCA 60.750 50.000 0.00 0.00 0.00 5.69
483 929 0.317854 GCAAGTCAAAGTTCCCGCAC 60.318 55.000 0.00 0.00 0.00 5.34
484 930 0.310854 CAAGTCAAAGTTCCCGCACC 59.689 55.000 0.00 0.00 0.00 5.01
485 931 0.822121 AAGTCAAAGTTCCCGCACCC 60.822 55.000 0.00 0.00 0.00 4.61
488 934 4.265056 AAAGTTCCCGCACCCGCT 62.265 61.111 0.00 0.00 35.30 5.52
489 935 3.785122 AAAGTTCCCGCACCCGCTT 62.785 57.895 0.00 0.00 35.30 4.68
490 936 4.699522 AGTTCCCGCACCCGCTTC 62.700 66.667 0.00 0.00 35.30 3.86
609 1089 2.320587 GCCGTCCAGCAGACAACTG 61.321 63.158 7.56 0.00 46.69 3.16
1588 2077 3.966026 GACGTCCGCCTCACCTTCG 62.966 68.421 3.51 0.00 0.00 3.79
1674 2163 1.736126 TCGTTCGAGAAGATGTACGCT 59.264 47.619 0.00 0.00 32.40 5.07
1677 2166 0.100682 TCGAGAAGATGTACGCTGCC 59.899 55.000 0.00 0.00 0.00 4.85
1707 2196 0.537188 GGTTCGAGGAGGAATGCAGA 59.463 55.000 0.00 0.00 0.00 4.26
1721 2210 1.078848 GCAGACGCCTTCCATCACT 60.079 57.895 0.00 0.00 0.00 3.41
1749 2244 2.576832 GCCAGTGCCATTGCCAGTT 61.577 57.895 0.00 0.00 36.33 3.16
1899 2394 3.470888 GCGGGGCTGGAGAGCTTA 61.471 66.667 0.00 0.00 45.44 3.09
2055 2550 2.159448 TGTCAACAACTTCAACAAGGCG 60.159 45.455 0.00 0.00 33.37 5.52
2093 2588 2.298163 GAGCTGCAATGATAAATGGGGG 59.702 50.000 1.02 0.00 0.00 5.40
2160 2655 2.295909 TGCTGTGCCTATTTTGGTTGAC 59.704 45.455 0.00 0.00 0.00 3.18
2337 2844 9.579768 GTGGATGAGTATGTAGATATTGATGAC 57.420 37.037 0.00 0.00 0.00 3.06
2993 3592 8.178313 TCTTTCTCAAAGGTATATGAGCGATA 57.822 34.615 0.00 0.00 42.21 2.92
3059 3663 1.294659 CTGGTGACGCTTCTTGCCTC 61.295 60.000 0.00 0.00 38.78 4.70
3206 3823 2.026014 GTTTGGTGTGCTGGTGCG 59.974 61.111 0.00 0.00 43.34 5.34
3379 4016 1.134699 ACGAGCCGTGATGATGAATGT 60.135 47.619 0.00 0.00 39.18 2.71
3471 4108 0.330941 TGCTGATGTGGTAATGGCCA 59.669 50.000 8.56 8.56 35.93 5.36
3542 4183 1.668151 GGACTCTCACGGGTGTTGC 60.668 63.158 0.00 0.00 0.00 4.17
3610 4251 0.900421 TCTGAGCAGGTGGATGAGTG 59.100 55.000 0.00 0.00 0.00 3.51
3685 4326 1.578215 AAGGGTGCTGAGGCCATGAT 61.578 55.000 5.01 0.00 37.74 2.45
3705 4346 1.004918 GTCTCTGGTGGTTCGGGTG 60.005 63.158 0.00 0.00 0.00 4.61
3734 4375 2.470990 TCATCATCCAGTGGTACTGCT 58.529 47.619 9.54 0.00 44.63 4.24
3740 4381 0.396435 CCAGTGGTACTGCTGAACCA 59.604 55.000 15.40 0.00 44.63 3.67
3742 4383 2.571212 CAGTGGTACTGCTGAACCAAA 58.429 47.619 10.34 0.00 46.97 3.28
3777 4418 6.215495 TCCCTTTTTGAGAAACATCGTTTT 57.785 33.333 0.00 0.00 0.00 2.43
3779 4420 7.773149 TCCCTTTTTGAGAAACATCGTTTTTA 58.227 30.769 0.00 0.00 0.00 1.52
3780 4421 8.251721 TCCCTTTTTGAGAAACATCGTTTTTAA 58.748 29.630 0.00 0.00 0.00 1.52
3788 4429 9.611284 TGAGAAACATCGTTTTTAATCTTCATG 57.389 29.630 0.00 0.00 0.00 3.07
3789 4430 9.825972 GAGAAACATCGTTTTTAATCTTCATGA 57.174 29.630 0.00 0.00 0.00 3.07
3804 4445 8.992835 AATCTTCATGAATTAAACTTCCTTGC 57.007 30.769 8.96 0.00 0.00 4.01
3805 4446 7.523293 TCTTCATGAATTAAACTTCCTTGCA 57.477 32.000 8.96 0.00 0.00 4.08
3806 4447 8.125978 TCTTCATGAATTAAACTTCCTTGCAT 57.874 30.769 8.96 0.00 0.00 3.96
3807 4448 8.246180 TCTTCATGAATTAAACTTCCTTGCATC 58.754 33.333 8.96 0.00 0.00 3.91
3808 4449 7.707624 TCATGAATTAAACTTCCTTGCATCT 57.292 32.000 0.00 0.00 0.00 2.90
3809 4450 8.125978 TCATGAATTAAACTTCCTTGCATCTT 57.874 30.769 0.00 0.00 0.00 2.40
3810 4451 8.587608 TCATGAATTAAACTTCCTTGCATCTTT 58.412 29.630 0.00 0.00 0.00 2.52
3811 4452 8.866956 CATGAATTAAACTTCCTTGCATCTTTC 58.133 33.333 0.00 0.00 0.00 2.62
3812 4453 8.181904 TGAATTAAACTTCCTTGCATCTTTCT 57.818 30.769 0.00 0.00 0.00 2.52
3813 4454 8.084073 TGAATTAAACTTCCTTGCATCTTTCTG 58.916 33.333 0.00 0.00 0.00 3.02
3814 4455 7.765695 ATTAAACTTCCTTGCATCTTTCTGA 57.234 32.000 0.00 0.00 0.00 3.27
3815 4456 7.765695 TTAAACTTCCTTGCATCTTTCTGAT 57.234 32.000 0.00 0.00 35.40 2.90
3824 4465 2.920524 CATCTTTCTGATGCAGAGGCT 58.079 47.619 0.00 0.00 44.96 4.58
3825 4466 2.398252 TCTTTCTGATGCAGAGGCTG 57.602 50.000 0.00 0.00 41.75 4.85
3826 4467 1.065636 TCTTTCTGATGCAGAGGCTGG 60.066 52.381 0.00 0.00 41.75 4.85
3827 4468 0.034767 TTTCTGATGCAGAGGCTGGG 60.035 55.000 0.00 0.00 41.75 4.45
3828 4469 1.918467 TTCTGATGCAGAGGCTGGGG 61.918 60.000 0.00 0.00 41.75 4.96
3829 4470 2.611800 TGATGCAGAGGCTGGGGT 60.612 61.111 0.00 0.00 41.91 4.95
3830 4471 1.306911 TGATGCAGAGGCTGGGGTA 60.307 57.895 0.00 0.00 41.91 3.69
3831 4472 1.147153 GATGCAGAGGCTGGGGTAC 59.853 63.158 0.00 0.00 41.91 3.34
3832 4473 1.616327 ATGCAGAGGCTGGGGTACA 60.616 57.895 0.00 0.00 41.91 2.90
3833 4474 0.990282 ATGCAGAGGCTGGGGTACAT 60.990 55.000 0.00 0.00 41.91 2.29
3834 4475 1.147153 GCAGAGGCTGGGGTACATC 59.853 63.158 0.00 0.00 36.96 3.06
3835 4476 1.832912 CAGAGGCTGGGGTACATCC 59.167 63.158 0.00 0.00 35.56 3.51
3905 5012 6.419484 TTTGACTCTGTTTACAGGATCAGA 57.581 37.500 9.82 6.71 43.91 3.27
3916 5023 0.398381 AGGATCAGAGTCAGGGAGCC 60.398 60.000 5.84 5.84 37.37 4.70
3940 5047 1.599047 GGCAGCACCTCAGAAGCTA 59.401 57.895 0.00 0.00 36.73 3.32
3973 5082 1.267121 TCTGGTGTAGAGGAGGTTGC 58.733 55.000 0.00 0.00 0.00 4.17
3975 5084 1.625818 CTGGTGTAGAGGAGGTTGCTT 59.374 52.381 0.00 0.00 0.00 3.91
4008 5118 5.698741 TTTGAGTAGGTGGATGATGTGAT 57.301 39.130 0.00 0.00 0.00 3.06
4019 5129 7.721399 AGGTGGATGATGTGATTACTTATTTCC 59.279 37.037 0.00 0.00 0.00 3.13
4054 5165 5.180492 TGTCGGCTTGGATTTAGTTAACTTG 59.820 40.000 14.49 0.00 0.00 3.16
4132 5244 7.272978 TGTCTATATAAGTGAAAAGTGGAGGC 58.727 38.462 0.00 0.00 0.00 4.70
4135 5247 9.209048 TCTATATAAGTGAAAAGTGGAGGCTAA 57.791 33.333 0.00 0.00 0.00 3.09
4157 5277 2.435805 TGAGGCATGGTCTAGTTCATCC 59.564 50.000 0.00 0.47 0.00 3.51
4248 5370 2.004583 TATATGCTTATGGGCGACGC 57.995 50.000 12.43 12.43 34.52 5.19
4260 5382 1.010797 GCGACGCAACTATGGCATG 60.011 57.895 16.42 2.76 0.00 4.06
4389 6269 4.019174 AGTTGAATGCGAATTTCCATCCT 58.981 39.130 0.00 0.00 0.00 3.24
4397 6277 3.487544 GCGAATTTCCATCCTTGTAGTGC 60.488 47.826 0.00 0.00 0.00 4.40
4430 6325 8.053355 ACTTTCTAAGATTATACCCACCTTTGG 58.947 37.037 0.00 0.00 43.50 3.28
4440 6335 2.107366 CCCACCTTTGGTTTCAACAGT 58.893 47.619 0.00 0.00 42.10 3.55
4548 6487 4.676924 GGCATTTCTTGATTATAACTGCGC 59.323 41.667 0.00 0.00 0.00 6.09
4627 6578 5.792741 TGTTGCAATTTCTGGGAAATTAGG 58.207 37.500 15.03 7.81 0.00 2.69
4659 6612 8.770438 ATGTTTGTCACTGTTAACACATTTTT 57.230 26.923 3.59 0.00 33.77 1.94
4714 6667 4.796830 CCGAAATGATTGATGCAGTTTCAG 59.203 41.667 0.00 0.00 0.00 3.02
4731 6684 1.001293 TCAGTGCTGGTGTGAGATGAC 59.999 52.381 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.429610 TGCTTGTAGGACGATAGAACCC 59.570 50.000 0.00 0.00 41.38 4.11
19 20 3.695830 TCCTTTTGCTTGTAGGACGAT 57.304 42.857 0.00 0.00 33.23 3.73
59 64 2.045045 TCTTGAATGCCGGCCTGG 60.045 61.111 26.77 8.27 42.50 4.45
60 65 2.409870 GGTCTTGAATGCCGGCCTG 61.410 63.158 26.77 7.53 0.00 4.85
78 83 1.970917 GATCCGCGGAGTGCTTTGTG 61.971 60.000 33.87 0.00 43.27 3.33
79 84 1.741770 GATCCGCGGAGTGCTTTGT 60.742 57.895 33.87 14.26 43.27 2.83
99 105 2.229543 TGTGTGGCAGAAAAGCATGATC 59.770 45.455 0.00 0.00 35.83 2.92
116 123 3.155861 TCCCGTCCCGTGTTGTGT 61.156 61.111 0.00 0.00 0.00 3.72
247 275 1.066257 GCAGCAAATGCGTATGGGG 59.934 57.895 0.00 0.00 46.99 4.96
267 295 1.128809 TCCTGTTACGGGAGGGCAAA 61.129 55.000 9.15 0.00 33.41 3.68
269 297 2.120940 TCCTGTTACGGGAGGGCA 59.879 61.111 9.15 0.00 33.41 5.36
270 298 2.582978 GTCCTGTTACGGGAGGGC 59.417 66.667 13.99 0.00 39.90 5.19
272 300 2.183555 GCGTCCTGTTACGGGAGG 59.816 66.667 23.98 23.98 44.74 4.30
273 301 1.153823 CTGCGTCCTGTTACGGGAG 60.154 63.158 13.99 8.97 39.90 4.30
274 302 0.608856 TACTGCGTCCTGTTACGGGA 60.609 55.000 9.15 9.15 43.06 5.14
275 303 0.244450 TTACTGCGTCCTGTTACGGG 59.756 55.000 3.32 3.32 43.06 5.28
277 305 3.723835 GCATTTTACTGCGTCCTGTTACG 60.724 47.826 0.00 0.00 45.58 3.18
278 306 3.187637 TGCATTTTACTGCGTCCTGTTAC 59.812 43.478 0.00 0.00 45.30 2.50
279 307 3.403968 TGCATTTTACTGCGTCCTGTTA 58.596 40.909 0.00 0.00 45.30 2.41
280 308 2.226330 TGCATTTTACTGCGTCCTGTT 58.774 42.857 0.00 0.00 45.30 3.16
281 309 1.806542 CTGCATTTTACTGCGTCCTGT 59.193 47.619 0.00 0.00 45.30 4.00
282 310 1.466360 GCTGCATTTTACTGCGTCCTG 60.466 52.381 0.00 0.00 45.30 3.86
283 311 0.804989 GCTGCATTTTACTGCGTCCT 59.195 50.000 0.00 0.00 45.30 3.85
284 312 0.521291 TGCTGCATTTTACTGCGTCC 59.479 50.000 0.00 0.00 45.30 4.79
285 313 2.444351 GATGCTGCATTTTACTGCGTC 58.556 47.619 17.36 0.00 45.30 5.19
286 314 1.133025 GGATGCTGCATTTTACTGCGT 59.867 47.619 17.36 0.00 45.30 5.24
287 315 1.534595 GGGATGCTGCATTTTACTGCG 60.535 52.381 17.36 0.00 45.30 5.18
288 316 1.477700 TGGGATGCTGCATTTTACTGC 59.522 47.619 17.36 1.56 42.62 4.40
289 317 3.872511 TTGGGATGCTGCATTTTACTG 57.127 42.857 17.36 0.00 0.00 2.74
290 318 3.834231 AGTTTGGGATGCTGCATTTTACT 59.166 39.130 17.36 12.44 0.00 2.24
310 338 2.552315 CCAACGTACAGGCATTTGAAGT 59.448 45.455 0.00 0.00 0.00 3.01
320 348 2.734948 TTTCCGGGCCAACGTACAGG 62.735 60.000 4.39 0.00 0.00 4.00
321 349 1.301874 TTTCCGGGCCAACGTACAG 60.302 57.895 4.39 0.00 0.00 2.74
322 350 1.597578 GTTTCCGGGCCAACGTACA 60.598 57.895 4.39 0.00 0.00 2.90
323 351 1.165284 TTGTTTCCGGGCCAACGTAC 61.165 55.000 4.39 0.00 0.00 3.67
324 352 0.250814 ATTGTTTCCGGGCCAACGTA 60.251 50.000 4.39 0.00 0.00 3.57
325 353 1.529713 ATTGTTTCCGGGCCAACGT 60.530 52.632 4.39 0.00 0.00 3.99
326 354 1.080839 CATTGTTTCCGGGCCAACG 60.081 57.895 4.39 0.00 0.00 4.10
327 355 1.374125 GCATTGTTTCCGGGCCAAC 60.374 57.895 4.39 0.00 0.00 3.77
328 356 2.925262 CGCATTGTTTCCGGGCCAA 61.925 57.895 4.39 2.39 0.00 4.52
329 357 3.369400 CGCATTGTTTCCGGGCCA 61.369 61.111 4.39 0.00 0.00 5.36
330 358 3.051392 CTCGCATTGTTTCCGGGCC 62.051 63.158 0.00 0.00 0.00 5.80
331 359 2.485122 CTCGCATTGTTTCCGGGC 59.515 61.111 0.00 0.00 0.00 6.13
332 360 0.391927 TACCTCGCATTGTTTCCGGG 60.392 55.000 0.00 0.00 0.00 5.73
333 361 1.444836 TTACCTCGCATTGTTTCCGG 58.555 50.000 0.00 0.00 0.00 5.14
334 362 2.739913 TCTTTACCTCGCATTGTTTCCG 59.260 45.455 0.00 0.00 0.00 4.30
335 363 4.759516 TTCTTTACCTCGCATTGTTTCC 57.240 40.909 0.00 0.00 0.00 3.13
336 364 6.183309 AGATTCTTTACCTCGCATTGTTTC 57.817 37.500 0.00 0.00 0.00 2.78
337 365 7.770897 AGATAGATTCTTTACCTCGCATTGTTT 59.229 33.333 0.00 0.00 0.00 2.83
338 366 7.275920 AGATAGATTCTTTACCTCGCATTGTT 58.724 34.615 0.00 0.00 0.00 2.83
339 367 6.821388 AGATAGATTCTTTACCTCGCATTGT 58.179 36.000 0.00 0.00 0.00 2.71
340 368 8.818141 TTAGATAGATTCTTTACCTCGCATTG 57.182 34.615 0.00 0.00 35.79 2.82
341 369 9.832445 TTTTAGATAGATTCTTTACCTCGCATT 57.168 29.630 0.00 0.00 35.79 3.56
342 370 9.832445 TTTTTAGATAGATTCTTTACCTCGCAT 57.168 29.630 0.00 0.00 35.79 4.73
377 822 6.366877 CCAGTGATGAAGCAAATTTACCTTTG 59.633 38.462 0.00 0.00 38.79 2.77
378 823 6.267471 TCCAGTGATGAAGCAAATTTACCTTT 59.733 34.615 0.00 0.00 0.00 3.11
380 825 5.324409 TCCAGTGATGAAGCAAATTTACCT 58.676 37.500 0.00 0.00 0.00 3.08
389 834 2.289631 ACACGAATCCAGTGATGAAGCA 60.290 45.455 3.20 0.00 41.83 3.91
393 838 2.490509 ACGTACACGAATCCAGTGATGA 59.509 45.455 9.04 0.00 41.83 2.92
394 839 2.876091 ACGTACACGAATCCAGTGATG 58.124 47.619 9.04 0.00 41.83 3.07
395 840 3.066342 CCTACGTACACGAATCCAGTGAT 59.934 47.826 9.04 0.00 41.83 3.06
415 860 3.628646 AATTGCTTCGGCGCCTCCT 62.629 57.895 26.68 0.00 45.37 3.69
418 863 3.443045 CCAATTGCTTCGGCGCCT 61.443 61.111 26.68 0.00 45.37 5.52
419 864 3.281359 AACCAATTGCTTCGGCGCC 62.281 57.895 19.07 19.07 45.37 6.53
420 865 1.801512 GAACCAATTGCTTCGGCGC 60.802 57.895 0.00 0.00 45.37 6.53
421 866 1.511887 CGAACCAATTGCTTCGGCG 60.512 57.895 22.52 0.00 45.37 6.46
423 868 1.511887 CGCGAACCAATTGCTTCGG 60.512 57.895 28.08 18.22 39.73 4.30
424 869 2.145905 GCGCGAACCAATTGCTTCG 61.146 57.895 24.82 24.82 41.78 3.79
426 871 1.876497 ATGGCGCGAACCAATTGCTT 61.876 50.000 12.10 0.00 44.65 3.91
427 872 2.342650 ATGGCGCGAACCAATTGCT 61.343 52.632 12.10 0.00 44.65 3.91
428 873 2.160221 CATGGCGCGAACCAATTGC 61.160 57.895 12.10 0.00 44.65 3.56
445 891 1.750780 ACGGCTCGCTCTCTCATCA 60.751 57.895 0.00 0.00 0.00 3.07
446 892 1.299014 CACGGCTCGCTCTCTCATC 60.299 63.158 0.00 0.00 0.00 2.92
447 893 2.804167 CACGGCTCGCTCTCTCAT 59.196 61.111 0.00 0.00 0.00 2.90
448 894 4.121669 GCACGGCTCGCTCTCTCA 62.122 66.667 0.00 0.00 0.00 3.27
449 895 3.633094 TTGCACGGCTCGCTCTCTC 62.633 63.158 0.00 0.00 0.00 3.20
450 896 3.639541 CTTGCACGGCTCGCTCTCT 62.640 63.158 0.00 0.00 0.00 3.10
451 897 3.184683 CTTGCACGGCTCGCTCTC 61.185 66.667 0.00 0.00 0.00 3.20
452 898 3.923563 GACTTGCACGGCTCGCTCT 62.924 63.158 0.00 0.00 0.00 4.09
456 902 1.205064 CTTTGACTTGCACGGCTCG 59.795 57.895 0.00 0.00 0.00 5.03
482 928 1.300697 GACGTGAAGTGAAGCGGGT 60.301 57.895 0.00 0.00 0.00 5.28
483 929 2.027625 GGACGTGAAGTGAAGCGGG 61.028 63.158 0.00 0.00 0.00 6.13
484 930 2.027625 GGGACGTGAAGTGAAGCGG 61.028 63.158 0.00 0.00 0.00 5.52
485 931 3.550656 GGGACGTGAAGTGAAGCG 58.449 61.111 0.00 0.00 0.00 4.68
523 1002 0.179034 GATCTCTGACATGTGGGGCC 60.179 60.000 1.15 0.00 0.00 5.80
531 1010 2.502492 CGGCGGGGATCTCTGACAT 61.502 63.158 8.34 0.00 0.00 3.06
600 1080 2.310233 CCACGCCGTCAGTTGTCTG 61.310 63.158 0.00 0.00 42.54 3.51
603 1083 1.667830 CATCCACGCCGTCAGTTGT 60.668 57.895 0.00 0.00 0.00 3.32
951 1437 1.450312 CTGCCAGTTGGATCCGGTC 60.450 63.158 7.39 0.00 37.39 4.79
952 1438 1.903877 CTCTGCCAGTTGGATCCGGT 61.904 60.000 7.39 0.00 37.39 5.28
953 1439 1.153289 CTCTGCCAGTTGGATCCGG 60.153 63.158 7.39 2.89 37.39 5.14
1674 2163 3.876589 GAACCAAGAGACGGCGGCA 62.877 63.158 18.30 0.00 0.00 5.69
1677 2166 1.801913 CTCGAACCAAGAGACGGCG 60.802 63.158 4.80 4.80 37.93 6.46
1707 2196 1.003355 CACCAGTGATGGAAGGCGT 60.003 57.895 0.31 0.00 0.00 5.68
1734 2229 0.896940 CTGGAACTGGCAATGGCACT 60.897 55.000 5.05 0.00 43.71 4.40
1741 2236 2.513395 TTCCGCTGGAACTGGCAA 59.487 55.556 6.01 0.00 36.71 4.52
1749 2244 4.329545 GGTGGCAGTTCCGCTGGA 62.330 66.667 0.00 0.00 45.14 3.86
1899 2394 5.821470 CACATTATGCATCTTCTCTTCAGGT 59.179 40.000 0.19 0.00 0.00 4.00
2160 2655 1.338973 GCCATTACCACATCAGCATGG 59.661 52.381 0.00 0.00 42.13 3.66
2779 3377 5.419542 GCCAGATGAACTACAACATGACTA 58.580 41.667 0.00 0.00 0.00 2.59
2863 3462 6.003950 AGTTATGTCGCCCATAATAAGCATT 58.996 36.000 9.58 0.00 45.35 3.56
2865 3464 4.968259 AGTTATGTCGCCCATAATAAGCA 58.032 39.130 9.58 0.00 45.35 3.91
2866 3465 6.019801 CGATAGTTATGTCGCCCATAATAAGC 60.020 42.308 9.58 4.91 45.35 3.09
2867 3466 7.451281 CGATAGTTATGTCGCCCATAATAAG 57.549 40.000 9.58 0.58 45.35 1.73
2988 3587 5.636837 TGCTGGTACTGAAATTTTTATCGC 58.363 37.500 0.00 0.00 0.00 4.58
2993 3592 6.048509 CAGGTTTGCTGGTACTGAAATTTTT 58.951 36.000 0.00 0.00 0.00 1.94
3054 3658 5.975988 AGGGTATAATTTCAGAAGAGGCA 57.024 39.130 0.00 0.00 0.00 4.75
3379 4016 1.877680 CGTTGACCTCAGCAATGTCCA 60.878 52.381 0.00 0.00 0.00 4.02
3471 4108 4.655963 ACAGCACATGTTGTTTCCTCTAT 58.344 39.130 0.00 0.00 39.96 1.98
3542 4183 6.797033 CGCTCTCCTGTAAATAACAAAACAAG 59.203 38.462 0.00 0.00 37.74 3.16
3610 4251 8.102800 TGGCATCTCATCATCAATATTTACAC 57.897 34.615 0.00 0.00 0.00 2.90
3665 4306 1.304713 CATGGCCTCAGCACCCTTT 60.305 57.895 3.32 0.00 42.56 3.11
3685 4326 1.052124 ACCCGAACCACCAGAGACAA 61.052 55.000 0.00 0.00 0.00 3.18
3705 4346 3.012518 CACTGGATGATGAAGAACCACC 58.987 50.000 0.00 0.00 0.00 4.61
3734 4375 7.610580 AGGGAAAGAATAAACATTTGGTTCA 57.389 32.000 0.00 0.00 39.29 3.18
3779 4420 8.587608 TGCAAGGAAGTTTAATTCATGAAGATT 58.412 29.630 14.54 6.90 0.00 2.40
3780 4421 8.125978 TGCAAGGAAGTTTAATTCATGAAGAT 57.874 30.769 14.54 7.93 0.00 2.40
3782 4423 8.248945 AGATGCAAGGAAGTTTAATTCATGAAG 58.751 33.333 14.54 0.00 0.00 3.02
3783 4424 8.125978 AGATGCAAGGAAGTTTAATTCATGAA 57.874 30.769 11.26 11.26 0.00 2.57
3784 4425 7.707624 AGATGCAAGGAAGTTTAATTCATGA 57.292 32.000 0.00 0.00 0.00 3.07
3785 4426 8.767478 AAAGATGCAAGGAAGTTTAATTCATG 57.233 30.769 0.00 0.00 0.00 3.07
3786 4427 8.810041 AGAAAGATGCAAGGAAGTTTAATTCAT 58.190 29.630 0.00 0.00 0.00 2.57
3787 4428 8.084073 CAGAAAGATGCAAGGAAGTTTAATTCA 58.916 33.333 0.00 0.00 0.00 2.57
3788 4429 8.299570 TCAGAAAGATGCAAGGAAGTTTAATTC 58.700 33.333 0.00 0.00 0.00 2.17
3789 4430 8.181904 TCAGAAAGATGCAAGGAAGTTTAATT 57.818 30.769 0.00 0.00 0.00 1.40
3790 4431 7.765695 TCAGAAAGATGCAAGGAAGTTTAAT 57.234 32.000 0.00 0.00 0.00 1.40
3791 4432 7.596494 CATCAGAAAGATGCAAGGAAGTTTAA 58.404 34.615 0.00 0.00 46.90 1.52
3792 4433 7.149569 CATCAGAAAGATGCAAGGAAGTTTA 57.850 36.000 0.00 0.00 46.90 2.01
3793 4434 6.022163 CATCAGAAAGATGCAAGGAAGTTT 57.978 37.500 0.00 0.00 46.90 2.66
3794 4435 5.640189 CATCAGAAAGATGCAAGGAAGTT 57.360 39.130 0.00 0.00 46.90 2.66
3805 4446 2.421670 CCAGCCTCTGCATCAGAAAGAT 60.422 50.000 0.00 0.00 40.18 2.40
3806 4447 1.065636 CCAGCCTCTGCATCAGAAAGA 60.066 52.381 0.00 0.00 40.18 2.52
3807 4448 1.380524 CCAGCCTCTGCATCAGAAAG 58.619 55.000 0.00 0.00 40.18 2.62
3808 4449 0.034767 CCCAGCCTCTGCATCAGAAA 60.035 55.000 0.00 0.00 40.18 2.52
3809 4450 1.605992 CCCAGCCTCTGCATCAGAA 59.394 57.895 0.00 0.00 40.18 3.02
3810 4451 2.372890 CCCCAGCCTCTGCATCAGA 61.373 63.158 0.00 0.00 41.13 3.27
3811 4452 1.340399 TACCCCAGCCTCTGCATCAG 61.340 60.000 0.00 0.00 41.13 2.90
3812 4453 1.306911 TACCCCAGCCTCTGCATCA 60.307 57.895 0.00 0.00 41.13 3.07
3813 4454 1.147153 GTACCCCAGCCTCTGCATC 59.853 63.158 0.00 0.00 41.13 3.91
3814 4455 0.990282 ATGTACCCCAGCCTCTGCAT 60.990 55.000 0.00 0.00 41.13 3.96
3815 4456 1.616327 ATGTACCCCAGCCTCTGCA 60.616 57.895 0.00 0.00 41.13 4.41
3816 4457 1.147153 GATGTACCCCAGCCTCTGC 59.853 63.158 0.00 0.00 37.95 4.26
3817 4458 1.832912 GGATGTACCCCAGCCTCTG 59.167 63.158 0.00 0.00 46.51 3.35
3818 4459 4.401657 GGATGTACCCCAGCCTCT 57.598 61.111 0.00 0.00 46.51 3.69
3876 4517 5.769662 TCCTGTAAACAGAGTCAAATGCAAT 59.230 36.000 11.69 0.00 46.59 3.56
3878 4519 4.713553 TCCTGTAAACAGAGTCAAATGCA 58.286 39.130 11.69 0.00 46.59 3.96
3905 5012 4.748798 CCCCTGGGCTCCCTGACT 62.749 72.222 7.39 0.00 37.23 3.41
3923 5030 1.088910 GCTAGCTTCTGAGGTGCTGC 61.089 60.000 7.70 0.00 37.62 5.25
3940 5047 0.322975 ACCAGAGAACGAGCATTGCT 59.677 50.000 11.79 11.79 43.88 3.91
3973 5082 6.149474 CCACCTACTCAAATCCACTGTTAAAG 59.851 42.308 0.00 0.00 0.00 1.85
3975 5084 5.308497 TCCACCTACTCAAATCCACTGTTAA 59.692 40.000 0.00 0.00 0.00 2.01
4008 5118 7.279981 CGACATGAACATCCTGGAAATAAGTAA 59.720 37.037 0.00 0.00 0.00 2.24
4019 5129 1.399440 CAAGCCGACATGAACATCCTG 59.601 52.381 0.00 0.00 0.00 3.86
4132 5244 5.282055 TGAACTAGACCATGCCTCATTAG 57.718 43.478 0.00 0.00 0.00 1.73
4135 5247 3.072184 GGATGAACTAGACCATGCCTCAT 59.928 47.826 0.00 0.00 0.00 2.90
4145 5257 1.757699 AGAAGGCCGGATGAACTAGAC 59.242 52.381 5.05 0.00 0.00 2.59
4147 5259 1.757118 TCAGAAGGCCGGATGAACTAG 59.243 52.381 5.05 0.00 0.00 2.57
4248 5370 4.422073 TCTTACTCCCATGCCATAGTTG 57.578 45.455 0.00 0.00 0.00 3.16
4260 5382 9.971922 CCATGATTTCAATATTTTCTTACTCCC 57.028 33.333 0.00 0.00 0.00 4.30
4389 6269 2.035961 AGAAAGTCGAGCAGCACTACAA 59.964 45.455 0.00 0.00 0.00 2.41
4397 6277 6.864165 GGGTATAATCTTAGAAAGTCGAGCAG 59.136 42.308 0.00 0.00 0.00 4.24
4466 6361 6.588719 AAATATGCCAGTTTAAGCTTGACA 57.411 33.333 9.86 0.00 0.00 3.58
4627 6578 6.970043 TGTTAACAGTGACAAACATAAGCAAC 59.030 34.615 3.59 0.00 0.00 4.17
4691 6644 4.735985 TGAAACTGCATCAATCATTTCGG 58.264 39.130 0.00 0.00 0.00 4.30
4714 6667 0.319900 ACGTCATCTCACACCAGCAC 60.320 55.000 0.00 0.00 0.00 4.40
4731 6684 4.482386 TCGTGGAGAAGAAACTTATCACG 58.518 43.478 17.99 17.99 45.15 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.