Multiple sequence alignment - TraesCS2A01G466600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G466600 chr2A 100.000 3308 0 0 1 3308 711061174 711064481 0.000000e+00 6109
1 TraesCS2A01G466600 chr2A 79.106 2125 383 40 281 2382 710653270 710655356 0.000000e+00 1408
2 TraesCS2A01G466600 chr2A 76.877 1518 291 39 24 1527 710802313 710803784 0.000000e+00 804
3 TraesCS2A01G466600 chr2A 77.679 1017 160 35 1389 2382 710759363 710760335 2.880000e-155 558
4 TraesCS2A01G466600 chr2A 100.000 177 0 0 2399 2575 547264527 547264351 8.850000e-86 327
5 TraesCS2A01G466600 chr2A 75.610 451 90 11 1413 1847 711049227 711049673 4.330000e-49 206
6 TraesCS2A01G466600 chr2B 79.500 2078 379 30 326 2382 686813437 686815488 0.000000e+00 1434
7 TraesCS2A01G466600 chr2B 76.377 2379 446 72 1 2344 686456726 686459023 0.000000e+00 1173
8 TraesCS2A01G466600 chr2B 76.741 1982 372 54 415 2382 686048970 686050876 0.000000e+00 1024
9 TraesCS2A01G466600 chr2B 75.451 2273 423 85 1 2217 685815047 685817240 0.000000e+00 981
10 TraesCS2A01G466600 chr2B 76.558 1540 285 46 1 1527 685744404 685745880 0.000000e+00 774
11 TraesCS2A01G466600 chr2B 76.662 767 142 23 1594 2344 685270190 685270935 1.110000e-104 390
12 TraesCS2A01G466600 chr2B 92.607 257 17 2 3052 3308 686816228 686816482 5.220000e-98 368
13 TraesCS2A01G466600 chr2B 92.946 241 11 1 2754 2994 686815742 686815976 2.440000e-91 346
14 TraesCS2A01G466600 chr2B 93.636 220 13 1 2575 2793 686815528 686815747 8.850000e-86 327
15 TraesCS2A01G466600 chr2B 80.576 417 73 6 1931 2344 685746239 685746650 6.890000e-82 315
16 TraesCS2A01G466600 chr2D 77.638 1905 378 37 267 2154 572069705 572071578 0.000000e+00 1114
17 TraesCS2A01G466600 chr2D 77.463 812 141 29 1589 2382 572035285 572036072 6.510000e-122 448
18 TraesCS2A01G466600 chrUn 100.000 175 0 0 2401 2575 388821712 388821886 1.140000e-84 324
19 TraesCS2A01G466600 chr1B 100.000 175 0 0 2401 2575 132275977 132276151 1.140000e-84 324
20 TraesCS2A01G466600 chr1A 100.000 175 0 0 2401 2575 85838382 85838556 1.140000e-84 324
21 TraesCS2A01G466600 chr1A 96.392 194 3 3 2389 2579 99155057 99154865 1.920000e-82 316
22 TraesCS2A01G466600 chr5B 99.429 175 1 0 2401 2575 130927873 130927699 5.330000e-83 318
23 TraesCS2A01G466600 chr5B 99.429 175 1 0 2401 2575 208431540 208431366 5.330000e-83 318
24 TraesCS2A01G466600 chr5A 97.838 185 3 1 2401 2584 199302077 199302261 5.330000e-83 318
25 TraesCS2A01G466600 chr4A 95.431 197 5 4 2389 2584 274941664 274941857 8.910000e-81 311


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G466600 chr2A 711061174 711064481 3307 False 6109.00 6109 100.00000 1 3308 1 chr2A.!!$F5 3307
1 TraesCS2A01G466600 chr2A 710653270 710655356 2086 False 1408.00 1408 79.10600 281 2382 1 chr2A.!!$F1 2101
2 TraesCS2A01G466600 chr2A 710802313 710803784 1471 False 804.00 804 76.87700 24 1527 1 chr2A.!!$F3 1503
3 TraesCS2A01G466600 chr2A 710759363 710760335 972 False 558.00 558 77.67900 1389 2382 1 chr2A.!!$F2 993
4 TraesCS2A01G466600 chr2B 686456726 686459023 2297 False 1173.00 1173 76.37700 1 2344 1 chr2B.!!$F4 2343
5 TraesCS2A01G466600 chr2B 686048970 686050876 1906 False 1024.00 1024 76.74100 415 2382 1 chr2B.!!$F3 1967
6 TraesCS2A01G466600 chr2B 685815047 685817240 2193 False 981.00 981 75.45100 1 2217 1 chr2B.!!$F2 2216
7 TraesCS2A01G466600 chr2B 686813437 686816482 3045 False 618.75 1434 89.67225 326 3308 4 chr2B.!!$F6 2982
8 TraesCS2A01G466600 chr2B 685744404 685746650 2246 False 544.50 774 78.56700 1 2344 2 chr2B.!!$F5 2343
9 TraesCS2A01G466600 chr2B 685270190 685270935 745 False 390.00 390 76.66200 1594 2344 1 chr2B.!!$F1 750
10 TraesCS2A01G466600 chr2D 572069705 572071578 1873 False 1114.00 1114 77.63800 267 2154 1 chr2D.!!$F2 1887
11 TraesCS2A01G466600 chr2D 572035285 572036072 787 False 448.00 448 77.46300 1589 2382 1 chr2D.!!$F1 793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 813 0.035915 GAAGCCTCTTCCACCCTCAC 60.036 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2547 2671 0.108041 TTAAAGGCGTCCCTAAGGCG 60.108 55.0 0.0 0.0 41.9 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.939592 GGGTTGTACTCTTCCATTGCTAC 59.060 47.826 0.00 0.00 0.00 3.58
75 76 3.387374 ACATCTCTTGAGGAGCTACATGG 59.613 47.826 0.00 0.00 41.60 3.66
77 78 3.027412 TCTCTTGAGGAGCTACATGGTC 58.973 50.000 0.00 0.00 41.60 4.02
83 84 4.353777 TGAGGAGCTACATGGTCTTAAGT 58.646 43.478 0.00 0.00 42.40 2.24
92 96 9.515226 AGCTACATGGTCTTAAGTTTCAAATTA 57.485 29.630 1.63 0.00 0.00 1.40
98 102 8.911918 TGGTCTTAAGTTTCAAATTACTAGCA 57.088 30.769 1.63 0.00 0.00 3.49
99 103 9.344772 TGGTCTTAAGTTTCAAATTACTAGCAA 57.655 29.630 1.63 0.00 0.00 3.91
115 119 8.534333 TTACTAGCAACTTTGAGATAACACAG 57.466 34.615 0.00 0.00 0.00 3.66
117 121 3.503748 AGCAACTTTGAGATAACACAGCC 59.496 43.478 0.00 0.00 0.00 4.85
118 122 3.253188 GCAACTTTGAGATAACACAGCCA 59.747 43.478 0.00 0.00 0.00 4.75
129 133 1.830279 ACACAGCCACAATCCATGAG 58.170 50.000 0.00 0.00 0.00 2.90
139 143 2.093500 ACAATCCATGAGCGAGCTTGTA 60.093 45.455 2.14 0.00 0.00 2.41
143 147 1.662629 CCATGAGCGAGCTTGTACAAG 59.337 52.381 27.85 27.85 41.24 3.16
144 148 2.610433 CATGAGCGAGCTTGTACAAGA 58.390 47.619 34.43 15.33 40.79 3.02
146 150 3.319137 TGAGCGAGCTTGTACAAGATT 57.681 42.857 34.43 22.61 40.79 2.40
151 155 3.857052 CGAGCTTGTACAAGATTGGGTA 58.143 45.455 34.43 0.00 40.79 3.69
152 156 3.617263 CGAGCTTGTACAAGATTGGGTAC 59.383 47.826 34.43 16.77 40.79 3.34
153 157 4.575885 GAGCTTGTACAAGATTGGGTACA 58.424 43.478 34.43 0.00 45.79 2.90
160 164 7.247456 TGTACAAGATTGGGTACATCAACTA 57.753 36.000 0.00 0.00 43.45 2.24
163 167 7.200434 ACAAGATTGGGTACATCAACTAGAT 57.800 36.000 0.00 0.00 37.48 1.98
165 169 8.768397 ACAAGATTGGGTACATCAACTAGATAA 58.232 33.333 0.00 0.00 34.43 1.75
186 190 8.606830 AGATAATGTTAAAACTCTGAAGGAGGT 58.393 33.333 0.00 0.00 45.17 3.85
198 202 2.293170 GAAGGAGGTTTATGAGGCAGC 58.707 52.381 0.00 0.00 0.00 5.25
199 203 0.548510 AGGAGGTTTATGAGGCAGCC 59.451 55.000 1.84 1.84 0.00 4.85
201 205 0.255890 GAGGTTTATGAGGCAGCCCA 59.744 55.000 8.22 6.43 0.00 5.36
202 206 0.257039 AGGTTTATGAGGCAGCCCAG 59.743 55.000 8.22 0.00 0.00 4.45
204 208 1.340991 GGTTTATGAGGCAGCCCAGAA 60.341 52.381 8.22 6.85 0.00 3.02
235 239 8.149973 ACGAACTCTTAGAAAAACTGCATTTA 57.850 30.769 0.00 0.00 0.00 1.40
265 269 2.948315 GGAATCTCCTGAGGAAACATGC 59.052 50.000 1.41 0.00 32.53 4.06
266 270 2.322355 ATCTCCTGAGGAAACATGCG 57.678 50.000 1.41 0.00 0.00 4.73
267 271 0.976641 TCTCCTGAGGAAACATGCGT 59.023 50.000 1.41 0.00 0.00 5.24
268 272 1.081892 CTCCTGAGGAAACATGCGTG 58.918 55.000 1.41 3.82 0.00 5.34
309 313 1.650528 AGTGGCCTAAGTTCTGAGCT 58.349 50.000 3.32 0.00 0.00 4.09
310 314 1.277557 AGTGGCCTAAGTTCTGAGCTG 59.722 52.381 3.32 0.00 0.00 4.24
314 318 2.761208 GGCCTAAGTTCTGAGCTGTCTA 59.239 50.000 0.00 0.00 0.00 2.59
324 328 2.757314 CTGAGCTGTCTATGGACACAGA 59.243 50.000 18.03 0.54 46.19 3.41
347 351 0.980423 AGAGGTGCTTGAGGGTCTTC 59.020 55.000 0.00 0.00 0.00 2.87
349 353 0.689623 AGGTGCTTGAGGGTCTTCAG 59.310 55.000 0.00 0.00 0.00 3.02
353 357 0.676151 GCTTGAGGGTCTTCAGCCAG 60.676 60.000 0.00 0.00 43.42 4.85
357 361 0.103937 GAGGGTCTTCAGCCAGATCG 59.896 60.000 0.00 0.00 43.42 3.69
373 377 4.545610 CAGATCGGCACTTAGAGATTCTC 58.454 47.826 5.49 5.49 0.00 2.87
390 394 7.016072 AGAGATTCTCCAAATATCTGGGTACAG 59.984 40.741 10.09 0.00 46.30 2.74
392 396 7.789831 AGATTCTCCAAATATCTGGGTACAGTA 59.210 37.037 0.00 0.00 45.14 2.74
393 397 7.743116 TTCTCCAAATATCTGGGTACAGTAA 57.257 36.000 0.00 0.00 45.14 2.24
400 404 4.957684 ATCTGGGTACAGTAATGCTACC 57.042 45.455 11.25 11.25 45.14 3.18
406 410 3.181468 GGTACAGTAATGCTACCTCACCC 60.181 52.174 12.00 0.00 0.00 4.61
410 414 2.501723 AGTAATGCTACCTCACCCACTG 59.498 50.000 0.00 0.00 0.00 3.66
444 448 5.767168 GCAATATCTCATTTACCTCCTTGCT 59.233 40.000 0.00 0.00 34.12 3.91
472 476 5.236047 GCTTCAGCTATACAATTGTGGAGAG 59.764 44.000 21.42 9.77 38.21 3.20
503 507 7.554959 ACACTTCCATCTCTAAGAAGGTTTA 57.445 36.000 4.23 0.00 41.06 2.01
520 524 5.362263 AGGTTTACGTTTCTGACAAAGCTA 58.638 37.500 7.45 0.00 35.74 3.32
550 554 5.126396 GCAACCTGCAGAAAGTAAAAGAT 57.874 39.130 17.39 0.00 44.26 2.40
609 613 4.280677 TGAAATGCCGAAGTTGGAGAAATT 59.719 37.500 0.00 0.00 0.00 1.82
610 614 5.475220 TGAAATGCCGAAGTTGGAGAAATTA 59.525 36.000 0.00 0.00 0.00 1.40
673 677 2.159128 ACTGCAGATCGAGGATTGTCAG 60.159 50.000 23.35 2.11 0.00 3.51
701 705 6.712547 ACTAAAGGAGTTTGATCTGTTTGAGG 59.287 38.462 0.00 0.00 33.13 3.86
741 745 1.271001 TGAGCAGAGGTCATGGTTGTG 60.271 52.381 0.00 0.00 35.04 3.33
753 757 3.587061 TCATGGTTGTGTGGTCTTAGGAT 59.413 43.478 0.00 0.00 0.00 3.24
775 779 6.716628 GGATATTAATTCTGAGTGATTGCCCA 59.283 38.462 0.00 0.00 0.00 5.36
809 813 0.035915 GAAGCCTCTTCCACCCTCAC 60.036 60.000 0.00 0.00 0.00 3.51
812 816 2.660064 CCTCTTCCACCCTCACCCG 61.660 68.421 0.00 0.00 0.00 5.28
823 827 1.374758 CTCACCCGCCTGTTCTGAC 60.375 63.158 0.00 0.00 0.00 3.51
826 830 1.071471 ACCCGCCTGTTCTGACTTG 59.929 57.895 0.00 0.00 0.00 3.16
856 860 2.106857 TGGGGTTTCAACACTTCCGTAT 59.893 45.455 0.00 0.00 31.47 3.06
924 932 5.541845 TGATAAGGATAAGACGATGGCTTG 58.458 41.667 0.00 0.00 0.00 4.01
926 934 2.119495 AGGATAAGACGATGGCTTGGT 58.881 47.619 0.00 0.00 0.00 3.67
935 943 3.157087 ACGATGGCTTGGTTGAATCTTT 58.843 40.909 0.00 0.00 0.00 2.52
943 951 4.624452 GCTTGGTTGAATCTTTTGATGAGC 59.376 41.667 0.00 0.00 39.48 4.26
948 956 5.413833 GGTTGAATCTTTTGATGAGCTGAGA 59.586 40.000 0.00 0.00 39.48 3.27
1005 1013 6.189859 TCTTAGCAACCTCAAATTCATGGAT 58.810 36.000 0.00 0.00 0.00 3.41
1010 1018 8.345724 AGCAACCTCAAATTCATGGATATATC 57.654 34.615 3.96 3.96 0.00 1.63
1013 1021 9.511272 CAACCTCAAATTCATGGATATATCTGA 57.489 33.333 12.42 6.62 0.00 3.27
1021 1029 7.933215 TTCATGGATATATCTGATTGCCAAG 57.067 36.000 12.42 0.00 0.00 3.61
1054 1062 8.183536 GGTCTTTTTCGTTTGAAGGTTTTAGTA 58.816 33.333 0.00 0.00 35.06 1.82
1110 1118 4.908736 TGTGCAAAGAACTTTTCTCTTCG 58.091 39.130 0.00 0.00 39.61 3.79
1145 1153 4.411540 AGAGCATACCCTTGAAGATGTGAT 59.588 41.667 0.00 0.00 0.00 3.06
1157 1165 9.529325 CCTTGAAGATGTGATAGTTACGAATTA 57.471 33.333 0.00 0.00 0.00 1.40
1185 1193 4.637977 GCCTTCCCATCTCTTAAAAGTCTG 59.362 45.833 0.00 0.00 0.00 3.51
1251 1259 1.429423 GCAACATGCGCCTTACCTC 59.571 57.895 4.18 0.00 31.71 3.85
1264 1272 3.442977 GCCTTACCTCGAGAAACTGAGTA 59.557 47.826 15.71 2.50 0.00 2.59
1275 1283 8.226819 TCGAGAAACTGAGTATAGATGATTGT 57.773 34.615 0.00 0.00 0.00 2.71
1310 1331 3.187700 CAGTACTGTTACCGATGGAAGC 58.812 50.000 15.06 0.00 0.00 3.86
1320 1341 1.668419 CGATGGAAGCGGGAGAAAAT 58.332 50.000 0.00 0.00 45.34 1.82
1332 1353 5.010213 AGCGGGAGAAAATAGTCTATCAGAC 59.990 44.000 0.00 0.00 45.38 3.51
1362 1383 1.729470 CCAGGGAGGACTCGTCATCG 61.729 65.000 5.74 0.00 40.93 3.84
1368 1389 0.531200 AGGACTCGTCATCGGGAAAC 59.469 55.000 0.00 0.00 40.39 2.78
1423 1444 1.728971 GACTCTTGCACGTTCCATCAG 59.271 52.381 0.00 0.00 0.00 2.90
1444 1465 4.521639 CAGATCTCATCTCCTCTCTCAAGG 59.478 50.000 0.00 0.00 37.58 3.61
1484 1505 3.008157 TGCCCTCGTCTAACATTTAACCA 59.992 43.478 0.00 0.00 0.00 3.67
1490 1511 3.374058 CGTCTAACATTTAACCAGGGCAG 59.626 47.826 0.00 0.00 0.00 4.85
1491 1512 3.128764 GTCTAACATTTAACCAGGGCAGC 59.871 47.826 0.00 0.00 0.00 5.25
1523 1544 2.170187 CTGGATTCACCTCCCTTGAGAG 59.830 54.545 0.00 0.00 41.42 3.20
1538 1559 4.530875 CTTGAGAGGCTAATGATTTGGGT 58.469 43.478 0.00 0.00 0.00 4.51
1539 1560 4.591321 TGAGAGGCTAATGATTTGGGTT 57.409 40.909 0.00 0.00 0.00 4.11
1553 1574 3.686760 GGTTTGCCCTGAGCTTCC 58.313 61.111 0.00 0.00 44.23 3.46
1575 1596 3.310774 CCTCGTCATTGGTGCATAAAGAG 59.689 47.826 0.00 0.00 0.00 2.85
1592 1661 0.976073 GAGGGAAGTGATGACGGGGA 60.976 60.000 0.00 0.00 0.00 4.81
1599 1668 2.355986 TGATGACGGGGAGAACGGG 61.356 63.158 0.00 0.00 35.23 5.28
1616 1685 1.124477 GGGAGATGGCTCTTCCCGAT 61.124 60.000 5.28 0.00 40.95 4.18
1659 1731 1.004277 AGCGGCTATTCCCAAGAAACA 59.996 47.619 0.00 0.00 35.09 2.83
1685 1757 4.742138 GCAACCCTGCTTTCCTAGAGATAG 60.742 50.000 0.00 0.00 45.74 2.08
1686 1758 4.273300 ACCCTGCTTTCCTAGAGATAGT 57.727 45.455 0.00 0.00 0.00 2.12
1695 1767 4.374689 TCCTAGAGATAGTACCAGCCTG 57.625 50.000 0.00 0.00 0.00 4.85
1697 1769 4.076394 CCTAGAGATAGTACCAGCCTGAC 58.924 52.174 0.00 0.00 0.00 3.51
1724 1797 2.434843 CGGTATGGAGCAGCCCAGA 61.435 63.158 8.40 1.57 39.97 3.86
1733 1806 2.026641 GAGCAGCCCAGATTTGCAATA 58.973 47.619 0.00 0.00 40.22 1.90
1771 1844 0.532862 CACCGCACTGGAAGAGTTGT 60.533 55.000 0.00 0.00 42.00 3.32
1773 1846 1.308998 CCGCACTGGAAGAGTTGTTT 58.691 50.000 0.00 0.00 42.00 2.83
1778 1851 4.213270 CGCACTGGAAGAGTTGTTTATCAA 59.787 41.667 0.00 0.00 37.43 2.57
1795 1868 2.262211 TCAATGACTGTGAATCGCTCG 58.738 47.619 0.00 0.00 0.00 5.03
1800 1879 2.806856 CTGTGAATCGCTCGCTGCC 61.807 63.158 0.00 0.00 38.78 4.85
1801 1880 2.815211 GTGAATCGCTCGCTGCCA 60.815 61.111 0.00 0.00 38.78 4.92
1852 1934 1.602377 GGCATTTGACAGTATACGGCC 59.398 52.381 2.65 0.00 0.00 6.13
1853 1935 2.561569 GCATTTGACAGTATACGGCCT 58.438 47.619 0.00 0.00 0.00 5.19
1856 1938 3.520290 TTTGACAGTATACGGCCTCAG 57.480 47.619 0.00 0.00 0.00 3.35
1857 1939 1.399714 TGACAGTATACGGCCTCAGG 58.600 55.000 0.00 0.00 0.00 3.86
1878 1960 3.713858 CAGTTGTCTGCATGTTTGGAA 57.286 42.857 0.00 0.00 34.79 3.53
1894 2007 2.665165 TGGAAAGCTTTTCAAGGCTGA 58.335 42.857 18.10 0.00 38.91 4.26
1897 2010 1.992538 AAGCTTTTCAAGGCTGAGCT 58.007 45.000 3.72 0.00 38.91 4.09
1898 2011 2.867109 AGCTTTTCAAGGCTGAGCTA 57.133 45.000 3.72 0.00 37.41 3.32
1899 2012 3.362870 AGCTTTTCAAGGCTGAGCTAT 57.637 42.857 3.72 0.00 37.41 2.97
1900 2013 4.494091 AGCTTTTCAAGGCTGAGCTATA 57.506 40.909 3.72 0.00 37.41 1.31
1901 2014 4.450053 AGCTTTTCAAGGCTGAGCTATAG 58.550 43.478 3.72 0.00 37.41 1.31
1902 2015 4.163078 AGCTTTTCAAGGCTGAGCTATAGA 59.837 41.667 3.72 0.00 37.41 1.98
1903 2016 4.272261 GCTTTTCAAGGCTGAGCTATAGAC 59.728 45.833 3.72 0.00 31.69 2.59
1904 2017 5.669477 CTTTTCAAGGCTGAGCTATAGACT 58.331 41.667 3.72 0.00 34.15 3.24
1905 2018 6.684111 GCTTTTCAAGGCTGAGCTATAGACTA 60.684 42.308 3.72 0.00 30.54 2.59
1906 2019 6.985653 TTTCAAGGCTGAGCTATAGACTAT 57.014 37.500 3.72 0.00 30.54 2.12
1907 2020 5.973899 TCAAGGCTGAGCTATAGACTATG 57.026 43.478 3.72 7.43 30.54 2.23
1908 2021 4.219507 TCAAGGCTGAGCTATAGACTATGC 59.780 45.833 3.72 6.95 30.54 3.14
1963 2076 2.894765 TCTGTCCTTACCACGTCATTCA 59.105 45.455 0.00 0.00 0.00 2.57
1978 2091 0.111061 ATTCAGCAAGCACCTCACCA 59.889 50.000 0.00 0.00 0.00 4.17
2001 2115 2.139917 CTGCAACGCCTACAACTTACA 58.860 47.619 0.00 0.00 0.00 2.41
2029 2146 2.964209 AGAAAGTGAGGAGACTGACCA 58.036 47.619 0.00 0.00 46.84 4.02
2079 2196 2.604686 TCCCTGCAAGAGCTCGGT 60.605 61.111 8.37 0.00 42.74 4.69
2154 2271 4.699257 CCTTCCCTCAAGAAGTTGAAGATG 59.301 45.833 0.00 0.00 42.27 2.90
2217 2334 3.137544 TCCCACTTTTGCTGGAAGAACTA 59.862 43.478 0.00 0.00 34.07 2.24
2220 2337 4.214332 CCACTTTTGCTGGAAGAACTAGAC 59.786 45.833 0.00 0.00 34.07 2.59
2327 2445 3.055021 TGAATTGGTTACTGGACGCCATA 60.055 43.478 0.00 0.00 30.82 2.74
2344 2462 5.125417 ACGCCATATTAAGCACATGTTTCTT 59.875 36.000 12.97 12.97 0.00 2.52
2346 2464 6.458751 CGCCATATTAAGCACATGTTTCTTCT 60.459 38.462 12.04 5.91 0.00 2.85
2347 2465 7.254761 CGCCATATTAAGCACATGTTTCTTCTA 60.255 37.037 12.04 7.45 0.00 2.10
2348 2466 7.857885 GCCATATTAAGCACATGTTTCTTCTAC 59.142 37.037 12.04 0.00 0.00 2.59
2349 2467 8.892723 CCATATTAAGCACATGTTTCTTCTACA 58.107 33.333 12.04 0.00 0.00 2.74
2350 2468 9.708222 CATATTAAGCACATGTTTCTTCTACAC 57.292 33.333 12.04 0.00 0.00 2.90
2351 2469 7.744087 ATTAAGCACATGTTTCTTCTACACA 57.256 32.000 12.04 0.00 0.00 3.72
2352 2470 7.744087 TTAAGCACATGTTTCTTCTACACAT 57.256 32.000 12.04 0.00 0.00 3.21
2353 2471 8.840833 TTAAGCACATGTTTCTTCTACACATA 57.159 30.769 12.04 0.00 29.78 2.29
2354 2472 6.727824 AGCACATGTTTCTTCTACACATAC 57.272 37.500 0.00 0.00 29.78 2.39
2355 2473 6.230472 AGCACATGTTTCTTCTACACATACA 58.770 36.000 0.00 0.00 29.78 2.29
2382 2506 5.792741 ACAAATATTGCTGGCTTGCTTTTA 58.207 33.333 0.00 0.00 0.00 1.52
2384 2508 6.709846 ACAAATATTGCTGGCTTGCTTTTAAA 59.290 30.769 0.00 0.00 0.00 1.52
2385 2509 7.391275 ACAAATATTGCTGGCTTGCTTTTAAAT 59.609 29.630 0.00 0.00 0.00 1.40
2387 2511 8.652810 AATATTGCTGGCTTGCTTTTAAATAG 57.347 30.769 4.89 0.00 0.00 1.73
2389 2513 5.720371 TGCTGGCTTGCTTTTAAATAGAA 57.280 34.783 4.89 0.00 0.00 2.10
2390 2514 5.713025 TGCTGGCTTGCTTTTAAATAGAAG 58.287 37.500 4.89 0.00 0.00 2.85
2392 2516 5.574443 GCTGGCTTGCTTTTAAATAGAAGTG 59.426 40.000 0.00 0.00 0.00 3.16
2393 2517 6.648879 TGGCTTGCTTTTAAATAGAAGTGT 57.351 33.333 0.00 0.00 0.00 3.55
2394 2518 7.049799 TGGCTTGCTTTTAAATAGAAGTGTT 57.950 32.000 0.00 0.00 0.00 3.32
2395 2519 8.172352 TGGCTTGCTTTTAAATAGAAGTGTTA 57.828 30.769 0.00 0.00 0.00 2.41
2396 2520 8.802267 TGGCTTGCTTTTAAATAGAAGTGTTAT 58.198 29.630 0.00 0.00 0.00 1.89
2415 2539 8.612619 AGTGTTATCATCTATGTTTTTAAGGCG 58.387 33.333 0.00 0.00 0.00 5.52
2416 2540 8.609176 GTGTTATCATCTATGTTTTTAAGGCGA 58.391 33.333 0.00 0.00 0.00 5.54
2417 2541 8.609176 TGTTATCATCTATGTTTTTAAGGCGAC 58.391 33.333 0.00 0.00 0.00 5.19
2418 2542 5.712217 TCATCTATGTTTTTAAGGCGACG 57.288 39.130 0.00 0.00 0.00 5.12
2419 2543 4.033587 TCATCTATGTTTTTAAGGCGACGC 59.966 41.667 12.43 12.43 0.00 5.19
2431 2555 2.491152 CGACGCCTTACCGCCTTA 59.509 61.111 0.00 0.00 0.00 2.69
2432 2556 1.588139 CGACGCCTTACCGCCTTAG 60.588 63.158 0.00 0.00 0.00 2.18
2433 2557 1.227176 GACGCCTTACCGCCTTAGG 60.227 63.158 0.00 0.00 37.30 2.69
2434 2558 2.108362 CGCCTTACCGCCTTAGGG 59.892 66.667 0.00 0.00 35.02 3.53
2435 2559 2.428925 CGCCTTACCGCCTTAGGGA 61.429 63.158 0.00 0.00 35.02 4.20
2436 2560 1.446366 GCCTTACCGCCTTAGGGAG 59.554 63.158 0.00 0.00 35.02 4.30
2482 2606 4.467084 CTAGGCGGGCGCTTTGGA 62.467 66.667 7.64 0.00 41.60 3.53
2483 2607 4.770874 TAGGCGGGCGCTTTGGAC 62.771 66.667 7.64 0.00 41.60 4.02
2491 2615 3.195698 CGCTTTGGACGCCTAGGC 61.196 66.667 24.75 24.75 37.85 3.93
2509 2633 3.274067 GCCCAAAGCGGTCGATTT 58.726 55.556 0.55 0.55 33.72 2.17
2510 2634 1.584495 GCCCAAAGCGGTCGATTTT 59.416 52.632 3.79 0.00 30.80 1.82
2511 2635 0.456142 GCCCAAAGCGGTCGATTTTC 60.456 55.000 3.79 0.00 30.80 2.29
2512 2636 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.00 30.80 3.13
2513 2637 0.878416 CCAAAGCGGTCGATTTTCCA 59.122 50.000 3.79 0.00 30.80 3.53
2514 2638 1.268352 CCAAAGCGGTCGATTTTCCAA 59.732 47.619 3.79 0.00 30.80 3.53
2515 2639 2.287909 CCAAAGCGGTCGATTTTCCAAA 60.288 45.455 3.79 0.00 30.80 3.28
2516 2640 2.979813 CAAAGCGGTCGATTTTCCAAAG 59.020 45.455 3.79 0.00 30.80 2.77
2517 2641 0.521735 AGCGGTCGATTTTCCAAAGC 59.478 50.000 0.00 0.00 0.00 3.51
2518 2642 0.793104 GCGGTCGATTTTCCAAAGCG 60.793 55.000 0.54 0.54 0.00 4.68
2519 2643 0.179200 CGGTCGATTTTCCAAAGCGG 60.179 55.000 7.00 0.00 0.00 5.52
2520 2644 1.161843 GGTCGATTTTCCAAAGCGGA 58.838 50.000 7.00 0.00 44.40 5.54
2527 2651 3.009115 TCCAAAGCGGAGGGGGAG 61.009 66.667 0.00 0.00 39.64 4.30
2528 2652 4.803908 CCAAAGCGGAGGGGGAGC 62.804 72.222 0.00 0.00 36.56 4.70
2536 2660 4.516195 GAGGGGGAGCGCTTCGAC 62.516 72.222 13.26 5.82 0.00 4.20
2562 2686 3.459063 GTCGCCTTAGGGACGCCT 61.459 66.667 0.00 0.00 44.82 5.52
2563 2687 2.682494 TCGCCTTAGGGACGCCTT 60.682 61.111 0.00 0.00 34.09 4.35
2564 2688 2.267961 CGCCTTAGGGACGCCTTT 59.732 61.111 0.00 0.00 33.58 3.11
2565 2689 0.971959 TCGCCTTAGGGACGCCTTTA 60.972 55.000 0.00 0.00 34.09 1.85
2566 2690 0.108041 CGCCTTAGGGACGCCTTTAA 60.108 55.000 0.00 0.00 33.58 1.52
2567 2691 1.676615 CGCCTTAGGGACGCCTTTAAA 60.677 52.381 0.00 0.00 33.58 1.52
2568 2692 2.439409 GCCTTAGGGACGCCTTTAAAA 58.561 47.619 0.00 0.00 33.58 1.52
2569 2693 2.163010 GCCTTAGGGACGCCTTTAAAAC 59.837 50.000 0.00 0.00 33.58 2.43
2570 2694 3.414269 CCTTAGGGACGCCTTTAAAACA 58.586 45.455 0.00 0.00 33.58 2.83
2571 2695 4.014406 CCTTAGGGACGCCTTTAAAACAT 58.986 43.478 0.00 0.00 33.58 2.71
2572 2696 5.187687 CCTTAGGGACGCCTTTAAAACATA 58.812 41.667 0.00 0.00 33.58 2.29
2573 2697 5.296035 CCTTAGGGACGCCTTTAAAACATAG 59.704 44.000 0.00 0.00 33.58 2.23
2576 2700 3.760151 GGGACGCCTTTAAAACATAGGTT 59.240 43.478 0.00 0.00 39.43 3.50
2589 2713 6.937436 AAACATAGGTTATCATTCCGGAAC 57.063 37.500 21.56 6.03 35.82 3.62
2614 2738 6.590292 CGAATACATCAAGTGACAGGTAAACT 59.410 38.462 0.00 0.00 0.00 2.66
2631 2755 5.352846 GGTAAACTGGCATGTTTTGTTGTTT 59.647 36.000 16.37 9.64 40.23 2.83
2709 2833 8.087750 GTGGTGTGATTAATTTTCATTTCCTCA 58.912 33.333 0.00 0.00 0.00 3.86
2717 2841 6.409524 AATTTTCATTTCCTCAACTGCAGA 57.590 33.333 23.35 0.00 0.00 4.26
2746 2870 8.580720 GCAGAGATAACTACTGGAGATAAATCA 58.419 37.037 0.00 0.00 33.00 2.57
2752 2876 6.168270 ACTACTGGAGATAAATCAGAAGGC 57.832 41.667 0.00 0.00 33.19 4.35
2763 2887 8.421784 AGATAAATCAGAAGGCGTCTTATGTTA 58.578 33.333 22.46 15.21 41.50 2.41
2852 3011 3.989817 TGCAGCTACAGTAATGCATATCG 59.010 43.478 13.68 0.00 43.34 2.92
2855 3014 5.414360 CAGCTACAGTAATGCATATCGGAT 58.586 41.667 0.00 0.00 0.00 4.18
2867 3026 7.761038 ATGCATATCGGATATCGGAATACTA 57.239 36.000 15.98 5.62 39.77 1.82
2883 3042 6.341316 GGAATACTAGCAACAAGATGAGACA 58.659 40.000 0.00 0.00 0.00 3.41
2947 3106 2.414481 CAGTCAGAAGTCAAATGGCTCG 59.586 50.000 0.00 0.00 0.00 5.03
2953 3112 0.674895 AGTCAAATGGCTCGGCAGAC 60.675 55.000 0.00 1.77 0.00 3.51
2968 3127 5.670485 TCGGCAGACAACTATTATGTTCAT 58.330 37.500 0.00 0.00 0.00 2.57
2969 3128 6.811954 TCGGCAGACAACTATTATGTTCATA 58.188 36.000 0.00 0.00 0.00 2.15
2970 3129 7.269316 TCGGCAGACAACTATTATGTTCATAA 58.731 34.615 7.55 7.55 0.00 1.90
2971 3130 7.766738 TCGGCAGACAACTATTATGTTCATAAA 59.233 33.333 8.92 0.45 0.00 1.40
2972 3131 8.394877 CGGCAGACAACTATTATGTTCATAAAA 58.605 33.333 8.92 0.00 0.00 1.52
2994 3153 6.731292 AATTATTATTTCAGGTGGGGAAGC 57.269 37.500 0.00 0.00 0.00 3.86
2995 3154 3.756082 ATTATTTCAGGTGGGGAAGCA 57.244 42.857 0.00 0.00 0.00 3.91
2996 3155 2.507407 TATTTCAGGTGGGGAAGCAC 57.493 50.000 0.00 0.00 0.00 4.40
2997 3156 0.779997 ATTTCAGGTGGGGAAGCACT 59.220 50.000 0.00 0.00 0.00 4.40
2998 3157 0.110486 TTTCAGGTGGGGAAGCACTC 59.890 55.000 0.00 0.00 0.00 3.51
2999 3158 1.779061 TTCAGGTGGGGAAGCACTCC 61.779 60.000 0.00 0.00 44.54 3.85
3006 3165 2.936032 GGAAGCACTCCCCCTGGT 60.936 66.667 0.00 0.00 38.44 4.00
3007 3166 2.352805 GAAGCACTCCCCCTGGTG 59.647 66.667 0.00 0.00 36.62 4.17
3008 3167 2.121963 AAGCACTCCCCCTGGTGA 60.122 61.111 0.00 0.00 35.69 4.02
3009 3168 2.470938 GAAGCACTCCCCCTGGTGAC 62.471 65.000 0.00 0.00 35.69 3.67
3010 3169 4.394712 GCACTCCCCCTGGTGACG 62.395 72.222 0.00 0.00 35.69 4.35
3011 3170 2.923035 CACTCCCCCTGGTGACGT 60.923 66.667 0.00 0.00 35.69 4.34
3012 3171 2.122547 ACTCCCCCTGGTGACGTT 60.123 61.111 0.00 0.00 0.00 3.99
3013 3172 1.768888 ACTCCCCCTGGTGACGTTT 60.769 57.895 0.00 0.00 0.00 3.60
3014 3173 1.003718 CTCCCCCTGGTGACGTTTC 60.004 63.158 0.00 0.00 0.00 2.78
3015 3174 1.764571 CTCCCCCTGGTGACGTTTCA 61.765 60.000 0.00 0.00 0.00 2.69
3016 3175 1.149627 CCCCCTGGTGACGTTTCAA 59.850 57.895 0.00 0.00 31.90 2.69
3017 3176 0.466555 CCCCCTGGTGACGTTTCAAA 60.467 55.000 0.00 0.00 31.90 2.69
3018 3177 1.394618 CCCCTGGTGACGTTTCAAAA 58.605 50.000 0.00 0.00 31.90 2.44
3019 3178 1.336755 CCCCTGGTGACGTTTCAAAAG 59.663 52.381 0.00 0.00 31.90 2.27
3020 3179 2.294074 CCCTGGTGACGTTTCAAAAGA 58.706 47.619 0.00 0.00 31.90 2.52
3058 3411 3.702330 TGAATATGTAAGCCTGTCGTCG 58.298 45.455 0.00 0.00 0.00 5.12
3059 3412 2.795175 ATATGTAAGCCTGTCGTCGG 57.205 50.000 0.00 0.00 0.00 4.79
3131 3484 4.093998 GCATGTGTATGTGCTATGCTATCC 59.906 45.833 0.00 0.00 40.58 2.59
3138 3491 0.033920 TGCTATGCTATCCTGGTGCG 59.966 55.000 0.00 0.00 0.00 5.34
3140 3493 1.541233 GCTATGCTATCCTGGTGCGTT 60.541 52.381 8.48 1.48 0.00 4.84
3152 3505 1.202592 TGGTGCGTTCTAACAAGCTCA 60.203 47.619 0.00 0.00 0.00 4.26
3157 3510 4.976116 GTGCGTTCTAACAAGCTCAATTTT 59.024 37.500 0.00 0.00 0.00 1.82
3180 3533 6.857777 TTTCACATATTTTTGCCTTTGTGG 57.142 33.333 0.00 0.00 36.13 4.17
3229 3582 1.872952 CGTCACACAATTTGCTCCAGA 59.127 47.619 0.00 0.00 0.00 3.86
3244 3597 4.142359 TGCTCCAGATCTTTAGTCGTTCTC 60.142 45.833 0.00 0.00 0.00 2.87
3247 3600 5.254115 TCCAGATCTTTAGTCGTTCTCTCA 58.746 41.667 0.00 0.00 0.00 3.27
3254 3607 4.500603 TTAGTCGTTCTCTCAGTGGTTC 57.499 45.455 0.00 0.00 0.00 3.62
3259 3612 2.221981 CGTTCTCTCAGTGGTTCTTTGC 59.778 50.000 0.00 0.00 0.00 3.68
3291 3644 6.512297 ACTTGCGGTTGTCATTTTCTTTAAT 58.488 32.000 0.00 0.00 0.00 1.40
3296 3649 8.353684 TGCGGTTGTCATTTTCTTTAATCTTAA 58.646 29.630 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.325716 GGAAGAGTACAACCCCTTGTGTA 59.674 47.826 0.00 0.00 40.98 2.90
17 18 3.073274 AGCAATGGAAGAGTACAACCC 57.927 47.619 0.00 0.00 0.00 4.11
19 20 4.575885 TGGTAGCAATGGAAGAGTACAAC 58.424 43.478 0.00 0.00 0.00 3.32
20 21 4.901197 TGGTAGCAATGGAAGAGTACAA 57.099 40.909 0.00 0.00 0.00 2.41
22 23 4.576463 CCAATGGTAGCAATGGAAGAGTAC 59.424 45.833 22.08 0.00 34.82 2.73
39 40 5.882000 TCAAGAGATGTCATGTTACCAATGG 59.118 40.000 0.00 0.00 0.00 3.16
62 63 5.346181 AACTTAAGACCATGTAGCTCCTC 57.654 43.478 10.09 0.00 0.00 3.71
92 96 5.409826 GCTGTGTTATCTCAAAGTTGCTAGT 59.590 40.000 0.00 0.00 0.00 2.57
98 102 4.460263 TGTGGCTGTGTTATCTCAAAGTT 58.540 39.130 0.00 0.00 0.00 2.66
99 103 4.085357 TGTGGCTGTGTTATCTCAAAGT 57.915 40.909 0.00 0.00 0.00 2.66
115 119 2.020131 CTCGCTCATGGATTGTGGC 58.980 57.895 0.00 0.00 0.00 5.01
117 121 1.063616 CAAGCTCGCTCATGGATTGTG 59.936 52.381 0.00 0.00 0.00 3.33
118 122 1.339438 ACAAGCTCGCTCATGGATTGT 60.339 47.619 0.00 0.00 35.25 2.71
129 133 1.398390 CCCAATCTTGTACAAGCTCGC 59.602 52.381 27.49 0.00 38.28 5.03
139 143 6.620877 TCTAGTTGATGTACCCAATCTTGT 57.379 37.500 1.85 0.00 0.00 3.16
143 147 9.561069 AACATTATCTAGTTGATGTACCCAATC 57.439 33.333 10.62 0.00 36.65 2.67
160 164 8.606830 ACCTCCTTCAGAGTTTTAACATTATCT 58.393 33.333 0.00 0.00 41.47 1.98
163 167 8.990163 AAACCTCCTTCAGAGTTTTAACATTA 57.010 30.769 0.00 0.00 35.62 1.90
165 169 9.014297 CATAAACCTCCTTCAGAGTTTTAACAT 57.986 33.333 0.00 0.00 41.24 2.71
175 179 3.181329 TGCCTCATAAACCTCCTTCAGA 58.819 45.455 0.00 0.00 0.00 3.27
177 181 2.356125 GCTGCCTCATAAACCTCCTTCA 60.356 50.000 0.00 0.00 0.00 3.02
179 183 1.064389 GGCTGCCTCATAAACCTCCTT 60.064 52.381 12.43 0.00 0.00 3.36
186 190 2.897271 TTTCTGGGCTGCCTCATAAA 57.103 45.000 19.68 15.48 0.00 1.40
208 212 6.431198 TGCAGTTTTTCTAAGAGTTCGTTT 57.569 33.333 0.00 0.00 0.00 3.60
211 215 9.267096 GATAAATGCAGTTTTTCTAAGAGTTCG 57.733 33.333 4.05 0.00 0.00 3.95
216 220 7.888021 TCCAGGATAAATGCAGTTTTTCTAAGA 59.112 33.333 4.05 0.00 31.08 2.10
224 228 4.934356 TCCTTCCAGGATAAATGCAGTTT 58.066 39.130 4.05 2.06 40.06 2.66
226 230 4.591321 TTCCTTCCAGGATAAATGCAGT 57.409 40.909 0.00 0.00 45.34 4.40
229 233 4.764308 GGAGATTCCTTCCAGGATAAATGC 59.236 45.833 0.00 0.00 45.34 3.56
235 239 3.316501 CTCAGGAGATTCCTTCCAGGAT 58.683 50.000 0.00 0.00 46.91 3.24
247 251 1.556911 ACGCATGTTTCCTCAGGAGAT 59.443 47.619 0.00 0.00 31.21 2.75
248 252 0.976641 ACGCATGTTTCCTCAGGAGA 59.023 50.000 0.00 0.00 31.21 3.71
250 254 0.321564 CCACGCATGTTTCCTCAGGA 60.322 55.000 0.00 0.00 0.00 3.86
251 255 0.321564 TCCACGCATGTTTCCTCAGG 60.322 55.000 0.00 0.00 0.00 3.86
252 256 1.081892 CTCCACGCATGTTTCCTCAG 58.918 55.000 0.00 0.00 0.00 3.35
254 258 0.674895 AGCTCCACGCATGTTTCCTC 60.675 55.000 0.00 0.00 42.61 3.71
255 259 0.674895 GAGCTCCACGCATGTTTCCT 60.675 55.000 0.87 0.00 42.61 3.36
256 260 0.674895 AGAGCTCCACGCATGTTTCC 60.675 55.000 10.93 0.00 42.61 3.13
258 262 0.877071 CAAGAGCTCCACGCATGTTT 59.123 50.000 10.93 0.00 42.61 2.83
259 263 1.580845 GCAAGAGCTCCACGCATGTT 61.581 55.000 10.93 0.00 42.61 2.71
260 264 2.037136 GCAAGAGCTCCACGCATGT 61.037 57.895 10.93 0.00 42.61 3.21
261 265 1.579964 TTGCAAGAGCTCCACGCATG 61.580 55.000 19.41 7.70 42.61 4.06
262 266 0.890542 TTTGCAAGAGCTCCACGCAT 60.891 50.000 19.41 0.00 42.61 4.73
263 267 0.890542 ATTTGCAAGAGCTCCACGCA 60.891 50.000 15.99 15.99 42.61 5.24
264 268 0.455633 CATTTGCAAGAGCTCCACGC 60.456 55.000 10.93 11.33 42.74 5.34
265 269 0.169672 CCATTTGCAAGAGCTCCACG 59.830 55.000 10.93 0.00 42.74 4.94
266 270 1.538047 TCCATTTGCAAGAGCTCCAC 58.462 50.000 10.93 0.11 42.74 4.02
267 271 2.097036 CATCCATTTGCAAGAGCTCCA 58.903 47.619 10.93 0.00 42.74 3.86
268 272 2.097825 ACATCCATTTGCAAGAGCTCC 58.902 47.619 10.93 0.00 42.74 4.70
310 314 4.464597 ACCTCTCTTTCTGTGTCCATAGAC 59.535 45.833 0.00 0.00 43.83 2.59
314 318 2.289945 GCACCTCTCTTTCTGTGTCCAT 60.290 50.000 0.00 0.00 0.00 3.41
324 328 1.349357 GACCCTCAAGCACCTCTCTTT 59.651 52.381 0.00 0.00 0.00 2.52
353 357 3.319405 TGGAGAATCTCTAAGTGCCGATC 59.681 47.826 10.38 0.00 33.73 3.69
357 361 7.387397 CAGATATTTGGAGAATCTCTAAGTGCC 59.613 40.741 13.14 6.10 32.87 5.01
359 363 7.877097 CCCAGATATTTGGAGAATCTCTAAGTG 59.123 40.741 13.83 6.32 40.87 3.16
365 369 7.067496 TGTACCCAGATATTTGGAGAATCTC 57.933 40.000 13.83 0.71 40.87 2.75
368 372 6.831664 ACTGTACCCAGATATTTGGAGAAT 57.168 37.500 13.83 0.00 41.50 2.40
369 373 7.743116 TTACTGTACCCAGATATTTGGAGAA 57.257 36.000 13.83 0.00 41.50 2.87
373 377 6.299141 AGCATTACTGTACCCAGATATTTGG 58.701 40.000 5.27 5.27 41.50 3.28
390 394 2.420129 CCAGTGGGTGAGGTAGCATTAC 60.420 54.545 0.00 0.00 0.00 1.89
392 396 0.620556 CCAGTGGGTGAGGTAGCATT 59.379 55.000 0.00 0.00 0.00 3.56
393 397 1.274703 CCCAGTGGGTGAGGTAGCAT 61.275 60.000 21.24 0.00 38.25 3.79
400 404 2.674380 GCAAGCCCAGTGGGTGAG 60.674 66.667 29.23 18.87 46.51 3.51
420 424 5.767168 AGCAAGGAGGTAAATGAGATATTGC 59.233 40.000 0.00 0.00 39.56 3.56
431 435 3.226884 GCGTCAGCAAGGAGGTAAA 57.773 52.632 0.00 0.00 44.35 2.01
454 458 5.023533 TCCACTCTCCACAATTGTATAGC 57.976 43.478 11.53 0.00 0.00 2.97
494 498 5.220796 GCTTTGTCAGAAACGTAAACCTTCT 60.221 40.000 0.00 0.00 0.00 2.85
503 507 5.353123 TCAACTTTAGCTTTGTCAGAAACGT 59.647 36.000 0.00 0.00 0.00 3.99
520 524 2.057137 TCTGCAGGTTGCTCAACTTT 57.943 45.000 15.13 0.00 45.31 2.66
537 541 9.588096 AAGGAACCAATACATCTTTTACTTTCT 57.412 29.630 0.00 0.00 0.00 2.52
550 554 3.009033 CCTCCAGTGAAGGAACCAATACA 59.991 47.826 0.00 0.00 37.20 2.29
609 613 3.264193 ACCTTCCACAGAAGTGCATGATA 59.736 43.478 0.00 0.00 46.93 2.15
610 614 2.040813 ACCTTCCACAGAAGTGCATGAT 59.959 45.455 0.00 0.00 46.93 2.45
673 677 4.327680 ACAGATCAAACTCCTTTAGTGCC 58.672 43.478 0.00 0.00 38.88 5.01
701 705 6.183360 TGCTCAGTTCCGAAATTATCATTGTC 60.183 38.462 0.00 0.00 0.00 3.18
741 745 9.482627 CACTCAGAATTAATATCCTAAGACCAC 57.517 37.037 0.00 0.00 0.00 4.16
753 757 6.422333 TGTGGGCAATCACTCAGAATTAATA 58.578 36.000 5.83 0.00 38.40 0.98
775 779 4.646492 AGAGGCTTCAACACTTTCAAATGT 59.354 37.500 0.00 0.00 0.00 2.71
809 813 2.328099 GCAAGTCAGAACAGGCGGG 61.328 63.158 0.00 0.00 0.00 6.13
812 816 1.580845 ATGCGCAAGTCAGAACAGGC 61.581 55.000 17.11 0.00 41.68 4.85
823 827 1.526575 AAACCCCACTGATGCGCAAG 61.527 55.000 17.11 11.55 43.44 4.01
826 830 1.523154 TTGAAACCCCACTGATGCGC 61.523 55.000 0.00 0.00 0.00 6.09
856 860 9.434275 TTTTCACTAGATGATCCCTTCATACTA 57.566 33.333 0.00 0.00 45.29 1.82
905 909 2.505819 ACCAAGCCATCGTCTTATCCTT 59.494 45.455 0.00 0.00 0.00 3.36
924 932 5.413833 TCTCAGCTCATCAAAAGATTCAACC 59.586 40.000 0.00 0.00 0.00 3.77
926 934 7.698506 ATTCTCAGCTCATCAAAAGATTCAA 57.301 32.000 0.00 0.00 0.00 2.69
935 943 5.364735 TCATCCAGTATTCTCAGCTCATCAA 59.635 40.000 0.00 0.00 0.00 2.57
943 951 9.350357 CAAAATTTTGTCATCCAGTATTCTCAG 57.650 33.333 20.57 0.00 33.59 3.35
948 956 6.767456 TGCCAAAATTTTGTCATCCAGTATT 58.233 32.000 25.25 0.00 36.45 1.89
975 983 8.806429 TGAATTTGAGGTTGCTAAGATTATGA 57.194 30.769 0.00 0.00 0.00 2.15
999 1007 7.993758 AGATCTTGGCAATCAGATATATCCATG 59.006 37.037 9.18 2.60 0.00 3.66
1005 1013 8.441311 ACCTTAGATCTTGGCAATCAGATATA 57.559 34.615 0.00 0.00 0.00 0.86
1010 1018 5.033589 AGACCTTAGATCTTGGCAATCAG 57.966 43.478 0.00 0.00 0.00 2.90
1013 1021 6.127897 CGAAAAAGACCTTAGATCTTGGCAAT 60.128 38.462 0.00 0.00 36.52 3.56
1021 1029 7.041303 ACCTTCAAACGAAAAAGACCTTAGATC 60.041 37.037 0.00 0.00 0.00 2.75
1079 1087 8.031277 AGAAAAGTTCTTTGCACATGGATATTC 58.969 33.333 0.00 0.00 36.36 1.75
1110 1118 4.970621 TGCTCTGGCATCACATCC 57.029 55.556 0.00 0.00 44.28 3.51
1145 1153 4.141869 GGAAGGCCCTGTAATTCGTAACTA 60.142 45.833 0.00 0.00 0.00 2.24
1185 1193 5.574830 CGCTATTCCACATGAGCTAATAGTC 59.425 44.000 16.99 11.86 34.23 2.59
1245 1253 7.991460 TCATCTATACTCAGTTTCTCGAGGTAA 59.009 37.037 13.56 4.68 33.36 2.85
1251 1259 8.131731 TCACAATCATCTATACTCAGTTTCTCG 58.868 37.037 0.00 0.00 0.00 4.04
1310 1331 6.392625 TGTCTGATAGACTATTTTCTCCCG 57.607 41.667 10.03 0.00 45.27 5.14
1320 1341 7.234355 TGGCTGAGATAATGTCTGATAGACTA 58.766 38.462 10.03 0.00 45.27 2.59
1332 1353 2.038295 GTCCTCCCTGGCTGAGATAATG 59.962 54.545 1.96 0.00 35.26 1.90
1362 1383 3.756434 TCGATGTTTCATCTTGGTTTCCC 59.244 43.478 7.89 0.00 0.00 3.97
1368 1389 2.679837 CCAGGTCGATGTTTCATCTTGG 59.320 50.000 7.89 6.61 0.00 3.61
1377 1398 2.674796 GAGCTAACCAGGTCGATGTT 57.325 50.000 0.00 0.00 39.36 2.71
1423 1444 4.728772 TCCTTGAGAGAGGAGATGAGATC 58.271 47.826 0.00 0.00 40.87 2.75
1444 1465 7.040409 ACGAGGGCAATTCCAAATAAATATCTC 60.040 37.037 0.00 0.00 36.21 2.75
1450 1471 4.340617 AGACGAGGGCAATTCCAAATAAA 58.659 39.130 0.00 0.00 36.21 1.40
1451 1472 3.963129 AGACGAGGGCAATTCCAAATAA 58.037 40.909 0.00 0.00 36.21 1.40
1461 1482 4.004982 GGTTAAATGTTAGACGAGGGCAA 58.995 43.478 0.00 0.00 0.00 4.52
1490 1511 5.080659 GGTGAATCCAGAGAAGCATTCGC 62.081 52.174 0.00 0.00 45.78 4.70
1491 1512 2.611292 GGTGAATCCAGAGAAGCATTCG 59.389 50.000 0.00 0.00 42.72 3.34
1523 1544 2.905075 GGCAAACCCAAATCATTAGCC 58.095 47.619 0.00 0.00 0.00 3.93
1538 1559 1.380302 GAGGGAAGCTCAGGGCAAA 59.620 57.895 0.00 0.00 44.79 3.68
1539 1560 2.959484 CGAGGGAAGCTCAGGGCAA 61.959 63.158 0.00 0.00 44.79 4.52
1551 1572 1.199615 TATGCACCAATGACGAGGGA 58.800 50.000 0.00 0.00 0.00 4.20
1553 1574 3.270027 TCTTTATGCACCAATGACGAGG 58.730 45.455 0.00 0.00 0.00 4.63
1575 1596 0.976073 TCTCCCCGTCATCACTTCCC 60.976 60.000 0.00 0.00 0.00 3.97
1592 1661 0.827368 GAAGAGCCATCTCCCGTTCT 59.173 55.000 0.00 0.00 40.22 3.01
1599 1668 2.828520 TGATATCGGGAAGAGCCATCTC 59.171 50.000 0.00 0.00 38.95 2.75
1616 1685 5.739959 TGATGTCAAATTCCCGAAGTGATA 58.260 37.500 0.00 0.00 0.00 2.15
1630 1699 2.288666 GGAATAGCCGCTGATGTCAAA 58.711 47.619 2.16 0.00 0.00 2.69
1685 1757 2.742589 GCTAACTTTGTCAGGCTGGTAC 59.257 50.000 15.73 7.04 0.00 3.34
1686 1758 2.611971 CGCTAACTTTGTCAGGCTGGTA 60.612 50.000 15.73 0.63 0.00 3.25
1695 1767 2.608090 GCTCCATACCGCTAACTTTGTC 59.392 50.000 0.00 0.00 0.00 3.18
1697 1769 2.609459 CTGCTCCATACCGCTAACTTTG 59.391 50.000 0.00 0.00 0.00 2.77
1724 1797 4.885907 AGTGCAGCTGTAGATATTGCAAAT 59.114 37.500 16.64 0.00 45.22 2.32
1755 1828 3.745975 TGATAAACAACTCTTCCAGTGCG 59.254 43.478 0.00 0.00 34.56 5.34
1771 1844 5.005682 CGAGCGATTCACAGTCATTGATAAA 59.994 40.000 0.00 0.00 0.00 1.40
1773 1846 4.044426 CGAGCGATTCACAGTCATTGATA 58.956 43.478 0.00 0.00 0.00 2.15
1778 1851 0.174389 AGCGAGCGATTCACAGTCAT 59.826 50.000 0.00 0.00 0.00 3.06
1800 1879 2.629336 GGGAGTTCAAGCCCTCTATG 57.371 55.000 0.00 0.00 41.31 2.23
1813 1892 0.111253 CTGAGGTTGCCAAGGGAGTT 59.889 55.000 0.00 0.00 0.00 3.01
1815 1897 1.001641 CCTGAGGTTGCCAAGGGAG 60.002 63.158 0.00 0.00 0.00 4.30
1858 1940 3.713858 TTCCAAACATGCAGACAACTG 57.286 42.857 0.00 0.00 45.91 3.16
1859 1941 3.491447 GCTTTCCAAACATGCAGACAACT 60.491 43.478 0.00 0.00 0.00 3.16
1860 1942 2.796593 GCTTTCCAAACATGCAGACAAC 59.203 45.455 0.00 0.00 0.00 3.32
1867 1949 4.024641 CCTTGAAAAGCTTTCCAAACATGC 60.025 41.667 12.19 0.00 44.44 4.06
1878 1960 1.992538 AGCTCAGCCTTGAAAAGCTT 58.007 45.000 0.00 0.00 44.44 3.74
1894 2007 4.701651 CAGCTGAGAGCATAGTCTATAGCT 59.298 45.833 8.42 13.40 45.56 3.32
1897 2010 5.248380 TCCAGCTGAGAGCATAGTCTATA 57.752 43.478 17.39 0.00 45.56 1.31
1898 2011 4.111255 TCCAGCTGAGAGCATAGTCTAT 57.889 45.455 17.39 0.00 45.56 1.98
1899 2012 3.584733 TCCAGCTGAGAGCATAGTCTA 57.415 47.619 17.39 0.00 45.56 2.59
1900 2013 2.450867 TCCAGCTGAGAGCATAGTCT 57.549 50.000 17.39 0.00 45.56 3.24
1901 2014 3.194062 GTTTCCAGCTGAGAGCATAGTC 58.806 50.000 17.39 0.00 45.56 2.59
1902 2015 2.568956 TGTTTCCAGCTGAGAGCATAGT 59.431 45.455 17.39 0.00 45.56 2.12
1903 2016 2.935201 GTGTTTCCAGCTGAGAGCATAG 59.065 50.000 17.39 0.00 45.56 2.23
1904 2017 2.568956 AGTGTTTCCAGCTGAGAGCATA 59.431 45.455 17.39 0.00 45.56 3.14
1905 2018 1.350351 AGTGTTTCCAGCTGAGAGCAT 59.650 47.619 17.39 0.00 45.56 3.79
1906 2019 0.761187 AGTGTTTCCAGCTGAGAGCA 59.239 50.000 17.39 8.50 45.56 4.26
1907 2020 1.270518 TGAGTGTTTCCAGCTGAGAGC 60.271 52.381 17.39 5.74 42.84 4.09
1908 2021 2.827800 TGAGTGTTTCCAGCTGAGAG 57.172 50.000 17.39 0.00 0.00 3.20
1913 2026 2.300152 TCGATCTTGAGTGTTTCCAGCT 59.700 45.455 0.00 0.00 0.00 4.24
1963 2076 2.113986 GGTGGTGAGGTGCTTGCT 59.886 61.111 0.00 0.00 0.00 3.91
1978 2091 1.599797 GTTGTAGGCGTTGCAGGGT 60.600 57.895 0.00 0.00 0.00 4.34
2001 2115 4.120589 GTCTCCTCACTTTCTTCAAACGT 58.879 43.478 0.00 0.00 0.00 3.99
2029 2146 1.582389 AGGGCTCTCTCTTGCTCATT 58.418 50.000 0.00 0.00 30.90 2.57
2169 2286 1.768684 TTTCCGGCAGCCTTGAGACT 61.769 55.000 10.54 0.00 0.00 3.24
2217 2334 3.633525 TCTTGCTGCAAAACTTGATGTCT 59.366 39.130 16.74 0.00 0.00 3.41
2220 2337 3.183775 GCTTCTTGCTGCAAAACTTGATG 59.816 43.478 16.74 12.02 38.95 3.07
2327 2445 7.744087 TGTGTAGAAGAAACATGTGCTTAAT 57.256 32.000 12.62 8.41 0.00 1.40
2344 2462 9.008965 AGCAATATTTGTTGTTGTATGTGTAGA 57.991 29.630 0.00 0.00 0.00 2.59
2346 2464 8.026026 CCAGCAATATTTGTTGTTGTATGTGTA 58.974 33.333 3.89 0.00 39.84 2.90
2347 2465 6.867816 CCAGCAATATTTGTTGTTGTATGTGT 59.132 34.615 3.89 0.00 39.84 3.72
2348 2466 6.183360 GCCAGCAATATTTGTTGTTGTATGTG 60.183 38.462 3.89 0.00 39.84 3.21
2349 2467 5.868801 GCCAGCAATATTTGTTGTTGTATGT 59.131 36.000 3.89 0.00 39.84 2.29
2350 2468 6.101332 AGCCAGCAATATTTGTTGTTGTATG 58.899 36.000 3.89 0.00 39.84 2.39
2351 2469 6.284891 AGCCAGCAATATTTGTTGTTGTAT 57.715 33.333 3.89 0.00 39.84 2.29
2352 2470 5.720371 AGCCAGCAATATTTGTTGTTGTA 57.280 34.783 3.89 0.00 39.84 2.41
2353 2471 4.605640 AGCCAGCAATATTTGTTGTTGT 57.394 36.364 3.89 0.00 39.84 3.32
2354 2472 4.377635 GCAAGCCAGCAATATTTGTTGTTG 60.378 41.667 3.89 4.11 39.84 3.33
2355 2473 3.747529 GCAAGCCAGCAATATTTGTTGTT 59.252 39.130 3.89 0.00 39.84 2.83
2389 2513 8.612619 CGCCTTAAAAACATAGATGATAACACT 58.387 33.333 0.00 0.00 0.00 3.55
2390 2514 8.609176 TCGCCTTAAAAACATAGATGATAACAC 58.391 33.333 0.00 0.00 0.00 3.32
2392 2516 7.792508 CGTCGCCTTAAAAACATAGATGATAAC 59.207 37.037 0.00 0.00 0.00 1.89
2393 2517 7.517734 GCGTCGCCTTAAAAACATAGATGATAA 60.518 37.037 5.75 0.00 0.00 1.75
2394 2518 6.073980 GCGTCGCCTTAAAAACATAGATGATA 60.074 38.462 5.75 0.00 0.00 2.15
2395 2519 5.277345 GCGTCGCCTTAAAAACATAGATGAT 60.277 40.000 5.75 0.00 0.00 2.45
2396 2520 4.033587 GCGTCGCCTTAAAAACATAGATGA 59.966 41.667 5.75 0.00 0.00 2.92
2400 2524 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
2419 2543 1.408453 CCCTCCCTAAGGCGGTAAGG 61.408 65.000 0.00 0.00 44.71 2.69
2420 2544 1.408453 CCCCTCCCTAAGGCGGTAAG 61.408 65.000 0.00 0.00 44.71 2.34
2421 2545 1.383525 CCCCTCCCTAAGGCGGTAA 60.384 63.158 0.00 0.00 44.71 2.85
2422 2546 2.284493 CCCCTCCCTAAGGCGGTA 59.716 66.667 0.00 0.00 44.71 4.02
2423 2547 4.817909 CCCCCTCCCTAAGGCGGT 62.818 72.222 0.00 0.00 44.71 5.68
2465 2589 4.467084 TCCAAAGCGCCCGCCTAG 62.467 66.667 2.29 0.00 43.17 3.02
2466 2590 4.770874 GTCCAAAGCGCCCGCCTA 62.771 66.667 2.29 0.00 43.17 3.93
2474 2598 3.195698 GCCTAGGCGTCCAAAGCG 61.196 66.667 20.16 0.00 35.00 4.68
2492 2616 0.456142 GAAAATCGACCGCTTTGGGC 60.456 55.000 0.00 0.00 45.45 5.36
2493 2617 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.000 0.00 0.00 44.64 4.12
2494 2618 0.878416 TGGAAAATCGACCGCTTTGG 59.122 50.000 0.00 0.00 46.41 3.28
2495 2619 2.697431 TTGGAAAATCGACCGCTTTG 57.303 45.000 0.00 0.00 0.00 2.77
2496 2620 2.607038 GCTTTGGAAAATCGACCGCTTT 60.607 45.455 0.00 0.00 0.00 3.51
2497 2621 1.068541 GCTTTGGAAAATCGACCGCTT 60.069 47.619 0.00 0.00 0.00 4.68
2498 2622 0.521735 GCTTTGGAAAATCGACCGCT 59.478 50.000 0.00 0.00 0.00 5.52
2499 2623 0.793104 CGCTTTGGAAAATCGACCGC 60.793 55.000 0.00 0.00 0.00 5.68
2500 2624 0.179200 CCGCTTTGGAAAATCGACCG 60.179 55.000 0.00 0.00 42.00 4.79
2501 2625 1.161843 TCCGCTTTGGAAAATCGACC 58.838 50.000 0.00 0.00 46.38 4.79
2511 2635 4.803908 GCTCCCCCTCCGCTTTGG 62.804 72.222 0.00 0.00 40.09 3.28
2519 2643 4.516195 GTCGAAGCGCTCCCCCTC 62.516 72.222 12.06 2.47 0.00 4.30
2545 2669 2.517484 AAAGGCGTCCCTAAGGCGAC 62.517 60.000 0.00 0.00 41.90 5.19
2546 2670 0.971959 TAAAGGCGTCCCTAAGGCGA 60.972 55.000 0.00 0.00 41.90 5.54
2547 2671 0.108041 TTAAAGGCGTCCCTAAGGCG 60.108 55.000 0.00 0.00 41.90 5.52
2548 2672 2.118313 TTTAAAGGCGTCCCTAAGGC 57.882 50.000 0.00 0.00 41.90 4.35
2549 2673 3.414269 TGTTTTAAAGGCGTCCCTAAGG 58.586 45.455 0.00 0.00 41.90 2.69
2550 2674 5.296035 CCTATGTTTTAAAGGCGTCCCTAAG 59.704 44.000 0.00 0.00 41.90 2.18
2551 2675 5.187687 CCTATGTTTTAAAGGCGTCCCTAA 58.812 41.667 0.00 0.00 41.90 2.69
2552 2676 4.225717 ACCTATGTTTTAAAGGCGTCCCTA 59.774 41.667 0.00 0.00 41.90 3.53
2553 2677 3.009805 ACCTATGTTTTAAAGGCGTCCCT 59.990 43.478 0.00 0.00 45.77 4.20
2554 2678 3.349927 ACCTATGTTTTAAAGGCGTCCC 58.650 45.455 0.00 0.00 33.42 4.46
2555 2679 6.316890 TGATAACCTATGTTTTAAAGGCGTCC 59.683 38.462 0.00 0.00 35.87 4.79
2556 2680 7.311364 TGATAACCTATGTTTTAAAGGCGTC 57.689 36.000 0.00 0.00 35.87 5.19
2557 2681 7.875327 ATGATAACCTATGTTTTAAAGGCGT 57.125 32.000 0.00 0.00 35.87 5.68
2558 2682 7.860872 GGAATGATAACCTATGTTTTAAAGGCG 59.139 37.037 0.00 0.00 35.87 5.52
2559 2683 7.860872 CGGAATGATAACCTATGTTTTAAAGGC 59.139 37.037 0.00 0.00 35.87 4.35
2560 2684 8.349983 CCGGAATGATAACCTATGTTTTAAAGG 58.650 37.037 0.00 0.00 35.87 3.11
2561 2685 9.116067 TCCGGAATGATAACCTATGTTTTAAAG 57.884 33.333 0.00 0.00 35.87 1.85
2562 2686 9.463902 TTCCGGAATGATAACCTATGTTTTAAA 57.536 29.630 14.35 0.00 35.87 1.52
2563 2687 8.895737 GTTCCGGAATGATAACCTATGTTTTAA 58.104 33.333 22.04 0.00 35.87 1.52
2564 2688 7.225145 CGTTCCGGAATGATAACCTATGTTTTA 59.775 37.037 29.09 0.00 35.87 1.52
2565 2689 6.037830 CGTTCCGGAATGATAACCTATGTTTT 59.962 38.462 29.09 0.00 35.87 2.43
2566 2690 5.526111 CGTTCCGGAATGATAACCTATGTTT 59.474 40.000 29.09 0.00 35.87 2.83
2567 2691 5.054477 CGTTCCGGAATGATAACCTATGTT 58.946 41.667 29.09 0.00 38.52 2.71
2568 2692 4.342951 TCGTTCCGGAATGATAACCTATGT 59.657 41.667 30.93 0.00 31.88 2.29
2569 2693 4.878439 TCGTTCCGGAATGATAACCTATG 58.122 43.478 30.93 6.66 31.88 2.23
2570 2694 5.540400 TTCGTTCCGGAATGATAACCTAT 57.460 39.130 33.87 0.00 36.35 2.57
2571 2695 5.540400 ATTCGTTCCGGAATGATAACCTA 57.460 39.130 33.87 21.12 36.35 3.08
2572 2696 3.899052 TTCGTTCCGGAATGATAACCT 57.101 42.857 33.87 0.00 36.35 3.50
2573 2697 5.051816 TGTATTCGTTCCGGAATGATAACC 58.948 41.667 33.87 22.76 37.24 2.85
2576 2700 6.091718 TGATGTATTCGTTCCGGAATGATA 57.908 37.500 33.87 24.91 37.24 2.15
2589 2713 6.590292 AGTTTACCTGTCACTTGATGTATTCG 59.410 38.462 0.00 0.00 0.00 3.34
2599 2723 3.149196 CATGCCAGTTTACCTGTCACTT 58.851 45.455 0.00 0.00 39.74 3.16
2614 2738 6.595326 TGAATAACAAACAACAAAACATGCCA 59.405 30.769 0.00 0.00 0.00 4.92
2631 2755 9.889128 TTAGTTGACATGATGAGATGAATAACA 57.111 29.630 0.00 0.00 0.00 2.41
2684 2808 8.187913 TGAGGAAATGAAAATTAATCACACCA 57.812 30.769 0.00 0.00 0.00 4.17
2717 2841 4.861196 TCTCCAGTAGTTATCTCTGCACT 58.139 43.478 0.00 0.00 0.00 4.40
2746 2870 9.826574 TGTAATAAATAACATAAGACGCCTTCT 57.173 29.630 0.00 0.00 35.32 2.85
2838 2997 5.831997 TCCGATATCCGATATGCATTACTG 58.168 41.667 3.54 0.00 41.76 2.74
2840 2999 8.082852 AGTATTCCGATATCCGATATGCATTAC 58.917 37.037 3.54 0.00 41.76 1.89
2852 3011 6.688578 TCTTGTTGCTAGTATTCCGATATCC 58.311 40.000 0.00 0.00 0.00 2.59
2855 3014 7.230712 TCTCATCTTGTTGCTAGTATTCCGATA 59.769 37.037 0.00 0.00 0.00 2.92
2867 3026 4.815308 GCATATCTGTCTCATCTTGTTGCT 59.185 41.667 0.00 0.00 0.00 3.91
2928 3087 1.734465 CCGAGCCATTTGACTTCTGAC 59.266 52.381 0.00 0.00 0.00 3.51
2968 3127 8.700973 GCTTCCCCACCTGAAATAATAATTTTA 58.299 33.333 0.00 0.00 35.41 1.52
2969 3128 7.181845 TGCTTCCCCACCTGAAATAATAATTTT 59.818 33.333 0.00 0.00 35.41 1.82
2970 3129 6.671779 TGCTTCCCCACCTGAAATAATAATTT 59.328 34.615 0.00 0.00 38.03 1.82
2971 3130 6.098266 GTGCTTCCCCACCTGAAATAATAATT 59.902 38.462 0.00 0.00 0.00 1.40
2972 3131 5.598417 GTGCTTCCCCACCTGAAATAATAAT 59.402 40.000 0.00 0.00 0.00 1.28
2973 3132 4.953579 GTGCTTCCCCACCTGAAATAATAA 59.046 41.667 0.00 0.00 0.00 1.40
2994 3153 2.052047 AAACGTCACCAGGGGGAGTG 62.052 60.000 0.00 0.00 38.05 3.51
2995 3154 1.765597 GAAACGTCACCAGGGGGAGT 61.766 60.000 0.00 0.00 38.05 3.85
2996 3155 1.003718 GAAACGTCACCAGGGGGAG 60.004 63.158 0.00 0.00 38.05 4.30
2997 3156 1.346479 TTGAAACGTCACCAGGGGGA 61.346 55.000 0.00 0.00 38.05 4.81
2998 3157 0.466555 TTTGAAACGTCACCAGGGGG 60.467 55.000 0.00 0.00 41.29 5.40
2999 3158 1.336755 CTTTTGAAACGTCACCAGGGG 59.663 52.381 0.00 0.00 31.90 4.79
3000 3159 2.294074 TCTTTTGAAACGTCACCAGGG 58.706 47.619 0.00 0.00 31.90 4.45
3001 3160 4.364415 TTTCTTTTGAAACGTCACCAGG 57.636 40.909 0.00 0.00 42.84 4.45
3058 3411 4.094442 CCACAAAGGAAACTAGTAATCGCC 59.906 45.833 0.00 0.00 42.68 5.54
3059 3412 4.694037 ACCACAAAGGAAACTAGTAATCGC 59.306 41.667 0.00 0.00 42.68 4.58
3061 3414 7.923414 ATCACCACAAAGGAAACTAGTAATC 57.077 36.000 0.00 0.00 42.68 1.75
3070 3423 6.303054 TCACTCATTATCACCACAAAGGAAA 58.697 36.000 0.00 0.00 41.22 3.13
3113 3466 3.903714 ACCAGGATAGCATAGCACATACA 59.096 43.478 0.00 0.00 0.00 2.29
3131 3484 1.461127 GAGCTTGTTAGAACGCACCAG 59.539 52.381 0.00 0.00 0.00 4.00
3157 3510 6.259608 CACCACAAAGGCAAAAATATGTGAAA 59.740 34.615 5.36 0.00 43.14 2.69
3180 3533 6.305693 AGAACAGTTTGATAGTTGAAGCAC 57.694 37.500 0.00 0.00 0.00 4.40
3229 3582 4.767928 ACCACTGAGAGAACGACTAAAGAT 59.232 41.667 0.00 0.00 0.00 2.40
3244 3597 2.099592 TGCAAAGCAAAGAACCACTGAG 59.900 45.455 0.00 0.00 34.76 3.35
3247 3600 2.099756 GTCTGCAAAGCAAAGAACCACT 59.900 45.455 0.00 0.00 38.41 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.