Multiple sequence alignment - TraesCS2A01G466500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G466500 chr2A 100.000 3132 0 0 1 3132 711057329 711060460 0.000000e+00 5784.0
1 TraesCS2A01G466500 chr2A 74.390 1476 296 54 1710 3132 711036295 711037741 9.810000e-155 556.0
2 TraesCS2A01G466500 chr2A 75.046 1082 224 38 2071 3132 710756200 710757255 7.910000e-126 460.0
3 TraesCS2A01G466500 chr2A 86.080 352 40 6 961 1311 711035406 711035749 1.370000e-98 370.0
4 TraesCS2A01G466500 chr2A 75.243 824 169 22 2325 3132 710651275 710652079 2.970000e-95 359.0
5 TraesCS2A01G466500 chr2A 79.024 410 58 16 318 726 777950882 777950500 4.010000e-64 255.0
6 TraesCS2A01G466500 chr2A 97.368 38 0 1 928 965 711058187 711058223 2.610000e-06 63.9
7 TraesCS2A01G466500 chr2A 97.368 38 0 1 859 895 711058256 711058293 2.610000e-06 63.9
8 TraesCS2A01G466500 chr2B 83.615 1422 193 21 1740 3132 686046525 686047935 0.000000e+00 1299.0
9 TraesCS2A01G466500 chr2B 82.617 535 91 2 263 796 382936662 382936129 3.660000e-129 472.0
10 TraesCS2A01G466500 chr2B 76.046 789 172 15 2348 3129 686455148 686455926 8.140000e-106 394.0
11 TraesCS2A01G466500 chr2B 88.535 314 32 2 959 1268 686045586 686045899 8.200000e-101 377.0
12 TraesCS2A01G466500 chr2B 84.259 108 14 2 1325 1429 686046072 686046179 5.530000e-18 102.0
13 TraesCS2A01G466500 chr2B 78.472 144 25 6 75 213 767954522 767954664 4.300000e-14 89.8
14 TraesCS2A01G466500 chr5D 84.682 581 86 2 215 794 414239308 414238730 7.530000e-161 577.0
15 TraesCS2A01G466500 chr5B 84.752 564 84 2 230 792 241192046 241192608 5.860000e-157 564.0
16 TraesCS2A01G466500 chr6D 83.866 595 79 4 215 794 12985869 12986461 4.570000e-153 551.0
17 TraesCS2A01G466500 chr5A 84.138 580 76 7 230 794 513223570 513222992 5.910000e-152 547.0
18 TraesCS2A01G466500 chr1B 83.022 589 78 7 223 796 543462282 543462863 5.990000e-142 514.0
19 TraesCS2A01G466500 chr1A 82.024 573 101 2 223 794 66703791 66703220 1.310000e-133 486.0
20 TraesCS2A01G466500 chr1A 86.957 69 4 4 55 120 464867235 464867169 4.330000e-09 73.1
21 TraesCS2A01G466500 chr7D 82.028 562 94 7 221 780 559224756 559225312 3.660000e-129 472.0
22 TraesCS2A01G466500 chr3A 81.690 568 98 5 230 794 544165433 544164869 4.730000e-128 468.0
23 TraesCS2A01G466500 chr7A 80.709 508 72 15 223 725 6767032 6766546 3.810000e-99 372.0
24 TraesCS2A01G466500 chr2D 71.223 973 243 30 2174 3132 62025897 62024948 8.800000e-51 211.0
25 TraesCS2A01G466500 chr6B 93.333 45 3 0 3 47 202129624 202129580 2.020000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G466500 chr2A 711057329 711060460 3131 False 1970.600000 5784 98.245333 1 3132 3 chr2A.!!$F4 3131
1 TraesCS2A01G466500 chr2A 711035406 711037741 2335 False 463.000000 556 80.235000 961 3132 2 chr2A.!!$F3 2171
2 TraesCS2A01G466500 chr2A 710756200 710757255 1055 False 460.000000 460 75.046000 2071 3132 1 chr2A.!!$F2 1061
3 TraesCS2A01G466500 chr2A 710651275 710652079 804 False 359.000000 359 75.243000 2325 3132 1 chr2A.!!$F1 807
4 TraesCS2A01G466500 chr2B 686045586 686047935 2349 False 592.666667 1299 85.469667 959 3132 3 chr2B.!!$F3 2173
5 TraesCS2A01G466500 chr2B 382936129 382936662 533 True 472.000000 472 82.617000 263 796 1 chr2B.!!$R1 533
6 TraesCS2A01G466500 chr2B 686455148 686455926 778 False 394.000000 394 76.046000 2348 3129 1 chr2B.!!$F1 781
7 TraesCS2A01G466500 chr5D 414238730 414239308 578 True 577.000000 577 84.682000 215 794 1 chr5D.!!$R1 579
8 TraesCS2A01G466500 chr5B 241192046 241192608 562 False 564.000000 564 84.752000 230 792 1 chr5B.!!$F1 562
9 TraesCS2A01G466500 chr6D 12985869 12986461 592 False 551.000000 551 83.866000 215 794 1 chr6D.!!$F1 579
10 TraesCS2A01G466500 chr5A 513222992 513223570 578 True 547.000000 547 84.138000 230 794 1 chr5A.!!$R1 564
11 TraesCS2A01G466500 chr1B 543462282 543462863 581 False 514.000000 514 83.022000 223 796 1 chr1B.!!$F1 573
12 TraesCS2A01G466500 chr1A 66703220 66703791 571 True 486.000000 486 82.024000 223 794 1 chr1A.!!$R1 571
13 TraesCS2A01G466500 chr7D 559224756 559225312 556 False 472.000000 472 82.028000 221 780 1 chr7D.!!$F1 559
14 TraesCS2A01G466500 chr3A 544164869 544165433 564 True 468.000000 468 81.690000 230 794 1 chr3A.!!$R1 564
15 TraesCS2A01G466500 chr2D 62024948 62025897 949 True 211.000000 211 71.223000 2174 3132 1 chr2D.!!$R1 958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.036732 ATGCCTCTGACGGAAGCAAA 59.963 50.0 11.52 0.0 43.54 3.68 F
1461 1668 0.034186 TCAATGGGGGATGCTGACAC 60.034 55.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 2190 0.247460 CCGGCACTTGATCTCTGTGA 59.753 55.0 14.30 0.0 33.95 3.58 R
2561 2890 0.681564 TTTGTGCGACACCCAAACCT 60.682 50.0 7.38 0.0 32.73 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.932789 TGTGCCTCCACGATAAGC 57.067 55.556 0.00 0.00 45.04 3.09
18 19 1.979262 TGTGCCTCCACGATAAGCA 59.021 52.632 0.00 0.00 45.04 3.91
19 20 0.323302 TGTGCCTCCACGATAAGCAA 59.677 50.000 0.00 0.00 45.04 3.91
20 21 1.271108 TGTGCCTCCACGATAAGCAAA 60.271 47.619 0.00 0.00 45.04 3.68
21 22 2.017049 GTGCCTCCACGATAAGCAAAT 58.983 47.619 0.00 0.00 34.79 2.32
22 23 3.202906 GTGCCTCCACGATAAGCAAATA 58.797 45.455 0.00 0.00 34.79 1.40
23 24 3.815401 GTGCCTCCACGATAAGCAAATAT 59.185 43.478 0.00 0.00 34.79 1.28
24 25 3.814842 TGCCTCCACGATAAGCAAATATG 59.185 43.478 0.00 0.00 0.00 1.78
25 26 3.815401 GCCTCCACGATAAGCAAATATGT 59.185 43.478 0.00 0.00 0.00 2.29
26 27 4.319766 GCCTCCACGATAAGCAAATATGTG 60.320 45.833 0.00 0.00 0.00 3.21
27 28 4.319766 CCTCCACGATAAGCAAATATGTGC 60.320 45.833 10.09 10.09 45.28 4.57
28 29 3.563808 TCCACGATAAGCAAATATGTGCC 59.436 43.478 14.50 0.00 46.14 5.01
29 30 3.565482 CCACGATAAGCAAATATGTGCCT 59.435 43.478 14.50 4.08 46.14 4.75
30 31 4.319766 CCACGATAAGCAAATATGTGCCTC 60.320 45.833 14.50 8.20 46.14 4.70
31 32 4.512944 CACGATAAGCAAATATGTGCCTCT 59.487 41.667 14.50 2.33 46.14 3.69
32 33 4.752101 ACGATAAGCAAATATGTGCCTCTC 59.248 41.667 14.50 7.53 46.14 3.20
33 34 4.143242 CGATAAGCAAATATGTGCCTCTCG 60.143 45.833 14.50 14.86 46.14 4.04
34 35 2.698855 AGCAAATATGTGCCTCTCGT 57.301 45.000 14.50 0.00 46.14 4.18
35 36 2.283298 AGCAAATATGTGCCTCTCGTG 58.717 47.619 14.50 0.00 46.14 4.35
36 37 2.093500 AGCAAATATGTGCCTCTCGTGA 60.093 45.455 14.50 0.00 46.14 4.35
37 38 2.677836 GCAAATATGTGCCTCTCGTGAA 59.322 45.455 6.61 0.00 38.66 3.18
38 39 3.126858 GCAAATATGTGCCTCTCGTGAAA 59.873 43.478 6.61 0.00 38.66 2.69
39 40 4.728882 GCAAATATGTGCCTCTCGTGAAAG 60.729 45.833 6.61 0.00 38.66 2.62
40 41 4.471904 AATATGTGCCTCTCGTGAAAGA 57.528 40.909 0.00 0.00 0.00 2.52
41 42 2.839486 ATGTGCCTCTCGTGAAAGAA 57.161 45.000 0.00 0.00 0.00 2.52
42 43 2.613026 TGTGCCTCTCGTGAAAGAAA 57.387 45.000 0.00 0.00 0.00 2.52
43 44 2.912771 TGTGCCTCTCGTGAAAGAAAA 58.087 42.857 0.00 0.00 0.00 2.29
44 45 2.872245 TGTGCCTCTCGTGAAAGAAAAG 59.128 45.455 0.00 0.00 0.00 2.27
45 46 3.131396 GTGCCTCTCGTGAAAGAAAAGA 58.869 45.455 0.00 0.00 0.00 2.52
46 47 3.560068 GTGCCTCTCGTGAAAGAAAAGAA 59.440 43.478 0.00 0.00 0.00 2.52
47 48 3.560068 TGCCTCTCGTGAAAGAAAAGAAC 59.440 43.478 0.00 0.00 0.00 3.01
48 49 3.560068 GCCTCTCGTGAAAGAAAAGAACA 59.440 43.478 0.00 0.00 0.00 3.18
49 50 4.214332 GCCTCTCGTGAAAGAAAAGAACAT 59.786 41.667 0.00 0.00 0.00 2.71
50 51 5.683859 CCTCTCGTGAAAGAAAAGAACATG 58.316 41.667 0.00 0.00 0.00 3.21
51 52 5.334414 CCTCTCGTGAAAGAAAAGAACATGG 60.334 44.000 0.00 0.00 0.00 3.66
52 53 5.123227 TCTCGTGAAAGAAAAGAACATGGT 58.877 37.500 0.00 0.00 0.00 3.55
53 54 5.588648 TCTCGTGAAAGAAAAGAACATGGTT 59.411 36.000 0.00 0.00 0.00 3.67
54 55 6.094881 TCTCGTGAAAGAAAAGAACATGGTTT 59.905 34.615 0.00 0.00 0.00 3.27
55 56 6.626302 TCGTGAAAGAAAAGAACATGGTTTT 58.374 32.000 0.00 0.00 0.00 2.43
56 57 7.093992 TCGTGAAAGAAAAGAACATGGTTTTT 58.906 30.769 0.00 0.00 0.00 1.94
77 78 1.559682 TCCAAGAGGGACAGTTATGCC 59.440 52.381 0.00 0.00 42.15 4.40
78 79 1.561542 CCAAGAGGGACAGTTATGCCT 59.438 52.381 0.00 0.00 40.01 4.75
79 80 2.420687 CCAAGAGGGACAGTTATGCCTC 60.421 54.545 5.25 5.25 40.01 4.70
80 81 2.503356 CAAGAGGGACAGTTATGCCTCT 59.497 50.000 9.80 9.80 43.82 3.69
81 82 2.393646 AGAGGGACAGTTATGCCTCTC 58.606 52.381 9.80 0.00 40.20 3.20
82 83 1.067821 GAGGGACAGTTATGCCTCTCG 59.932 57.143 6.11 0.00 34.52 4.04
83 84 0.530870 GGGACAGTTATGCCTCTCGC 60.531 60.000 0.00 0.00 38.31 5.03
93 94 3.800628 GCCTCTCGCAAAAGCAAAT 57.199 47.368 0.00 0.00 37.47 2.32
94 95 2.919666 GCCTCTCGCAAAAGCAAATA 57.080 45.000 0.00 0.00 37.47 1.40
95 96 3.427161 GCCTCTCGCAAAAGCAAATAT 57.573 42.857 0.00 0.00 37.47 1.28
96 97 3.111098 GCCTCTCGCAAAAGCAAATATG 58.889 45.455 0.00 0.00 37.47 1.78
97 98 3.428045 GCCTCTCGCAAAAGCAAATATGT 60.428 43.478 0.00 0.00 37.47 2.29
98 99 4.100529 CCTCTCGCAAAAGCAAATATGTG 58.899 43.478 0.00 0.00 0.00 3.21
99 100 4.379813 CCTCTCGCAAAAGCAAATATGTGT 60.380 41.667 0.00 0.00 0.00 3.72
100 101 5.119931 TCTCGCAAAAGCAAATATGTGTT 57.880 34.783 0.00 0.00 0.00 3.32
101 102 5.527951 TCTCGCAAAAGCAAATATGTGTTT 58.472 33.333 0.00 0.00 0.00 2.83
102 103 5.629020 TCTCGCAAAAGCAAATATGTGTTTC 59.371 36.000 0.00 0.00 0.00 2.78
103 104 5.527951 TCGCAAAAGCAAATATGTGTTTCT 58.472 33.333 0.00 0.00 0.00 2.52
104 105 5.629020 TCGCAAAAGCAAATATGTGTTTCTC 59.371 36.000 0.00 0.00 0.00 2.87
105 106 5.164061 CGCAAAAGCAAATATGTGTTTCTCC 60.164 40.000 0.00 0.00 0.00 3.71
106 107 5.928264 GCAAAAGCAAATATGTGTTTCTCCT 59.072 36.000 0.00 0.00 0.00 3.69
107 108 6.128742 GCAAAAGCAAATATGTGTTTCTCCTG 60.129 38.462 0.00 0.00 0.00 3.86
108 109 6.899393 AAAGCAAATATGTGTTTCTCCTGA 57.101 33.333 0.00 0.00 0.00 3.86
109 110 6.899393 AAGCAAATATGTGTTTCTCCTGAA 57.101 33.333 0.00 0.00 0.00 3.02
110 111 6.899393 AGCAAATATGTGTTTCTCCTGAAA 57.101 33.333 0.00 0.00 39.59 2.69
111 112 6.917533 AGCAAATATGTGTTTCTCCTGAAAG 58.082 36.000 0.00 0.00 42.15 2.62
112 113 6.716628 AGCAAATATGTGTTTCTCCTGAAAGA 59.283 34.615 0.00 0.00 42.15 2.52
113 114 7.231317 AGCAAATATGTGTTTCTCCTGAAAGAA 59.769 33.333 0.00 0.00 42.15 2.52
114 115 7.867403 GCAAATATGTGTTTCTCCTGAAAGAAA 59.133 33.333 0.00 0.00 42.15 2.52
115 116 9.748708 CAAATATGTGTTTCTCCTGAAAGAAAA 57.251 29.630 0.95 0.00 42.15 2.29
149 150 3.572604 CTCTTTTCGAGAGGTACCGTT 57.427 47.619 6.18 0.00 46.77 4.44
150 151 4.691860 CTCTTTTCGAGAGGTACCGTTA 57.308 45.455 6.18 0.00 46.77 3.18
151 152 5.246145 CTCTTTTCGAGAGGTACCGTTAT 57.754 43.478 6.18 0.00 46.77 1.89
152 153 4.990257 TCTTTTCGAGAGGTACCGTTATG 58.010 43.478 6.18 0.00 0.00 1.90
153 154 2.857592 TTCGAGAGGTACCGTTATGC 57.142 50.000 6.18 0.00 0.00 3.14
154 155 1.027357 TCGAGAGGTACCGTTATGCC 58.973 55.000 6.18 0.00 0.00 4.40
155 156 1.030457 CGAGAGGTACCGTTATGCCT 58.970 55.000 6.18 0.00 37.40 4.75
158 159 2.510768 GAGGTACCGTTATGCCTCTG 57.489 55.000 6.18 0.00 45.37 3.35
159 160 2.029623 GAGGTACCGTTATGCCTCTGA 58.970 52.381 6.18 0.00 45.37 3.27
160 161 1.755380 AGGTACCGTTATGCCTCTGAC 59.245 52.381 6.18 0.00 26.15 3.51
161 162 1.535437 GGTACCGTTATGCCTCTGACG 60.535 57.143 0.00 0.00 35.44 4.35
164 165 3.733236 CGTTATGCCTCTGACGGAA 57.267 52.632 0.00 0.00 32.29 4.30
165 166 1.560923 CGTTATGCCTCTGACGGAAG 58.439 55.000 0.00 0.00 32.29 3.46
166 167 1.291132 GTTATGCCTCTGACGGAAGC 58.709 55.000 0.00 0.00 32.35 3.86
167 168 0.901827 TTATGCCTCTGACGGAAGCA 59.098 50.000 9.97 9.97 44.30 3.91
168 169 0.901827 TATGCCTCTGACGGAAGCAA 59.098 50.000 11.52 0.00 43.54 3.91
169 170 0.036732 ATGCCTCTGACGGAAGCAAA 59.963 50.000 11.52 0.00 43.54 3.68
170 171 0.884704 TGCCTCTGACGGAAGCAAAC 60.885 55.000 5.04 0.00 38.32 2.93
171 172 0.603975 GCCTCTGACGGAAGCAAACT 60.604 55.000 0.00 0.00 32.03 2.66
172 173 1.151668 CCTCTGACGGAAGCAAACTG 58.848 55.000 0.00 0.00 0.00 3.16
173 174 0.514691 CTCTGACGGAAGCAAACTGC 59.485 55.000 0.00 0.00 45.46 4.40
183 184 2.616969 GCAAACTGCTTCCACGAGA 58.383 52.632 0.00 0.00 40.96 4.04
184 185 0.944386 GCAAACTGCTTCCACGAGAA 59.056 50.000 0.00 0.00 40.96 2.87
196 197 4.355543 TCCACGAGAAGCAAATTTATGC 57.644 40.909 0.00 0.00 46.78 3.14
200 201 4.095483 CACGAGAAGCAAATTTATGCCTCT 59.905 41.667 3.41 3.41 46.92 3.69
203 204 5.573337 AGAAGCAAATTTATGCCTCTCAC 57.427 39.130 0.00 0.00 42.04 3.51
204 205 4.095483 AGAAGCAAATTTATGCCTCTCACG 59.905 41.667 0.00 0.00 42.04 4.35
205 206 6.089045 AGAAGCAAATTTATGCCTCTCACGA 61.089 40.000 0.00 0.00 42.04 4.35
206 207 4.355543 GCAAATTTATGCCTCTCACGAA 57.644 40.909 0.00 0.00 40.49 3.85
207 208 4.732784 GCAAATTTATGCCTCTCACGAAA 58.267 39.130 0.00 0.00 40.49 3.46
208 209 4.795278 GCAAATTTATGCCTCTCACGAAAG 59.205 41.667 0.00 0.00 40.49 2.62
209 210 4.622701 AATTTATGCCTCTCACGAAAGC 57.377 40.909 0.00 0.00 0.00 3.51
210 211 2.760634 TTATGCCTCTCACGAAAGCA 57.239 45.000 0.00 0.00 34.26 3.91
211 212 2.760634 TATGCCTCTCACGAAAGCAA 57.239 45.000 0.00 0.00 33.69 3.91
212 213 1.896220 ATGCCTCTCACGAAAGCAAA 58.104 45.000 0.00 0.00 33.69 3.68
213 214 1.896220 TGCCTCTCACGAAAGCAAAT 58.104 45.000 0.00 0.00 0.00 2.32
227 228 2.016961 CAAATCATGGGCCTCGTCG 58.983 57.895 4.53 0.00 0.00 5.12
316 317 2.911484 CGGTTGACGTCGGTGAGGA 61.911 63.158 11.62 0.00 37.93 3.71
345 346 1.271856 TTCTCCAACGCCCTGTATGA 58.728 50.000 0.00 0.00 0.00 2.15
359 360 1.067416 TATGACGCATCAGTCCGGC 59.933 57.895 0.00 0.00 38.57 6.13
391 392 4.337060 CGTGGTGGACGTCTGCGA 62.337 66.667 16.46 3.07 43.50 5.10
398 399 2.861721 GACGTCTGCGACTCGTCT 59.138 61.111 8.70 0.00 46.54 4.18
451 453 1.211709 GCATCGTTTGGGTTTCGGG 59.788 57.895 0.00 0.00 0.00 5.14
478 480 1.757118 CGAGGAAGAGTAGGGCATGAA 59.243 52.381 0.00 0.00 0.00 2.57
484 486 2.457598 AGAGTAGGGCATGAAAGACGA 58.542 47.619 0.00 0.00 0.00 4.20
486 488 1.899814 AGTAGGGCATGAAAGACGACA 59.100 47.619 0.00 0.00 0.00 4.35
497 499 1.222115 AAGACGACAACGCCTTGAGC 61.222 55.000 2.26 0.00 40.35 4.26
523 526 2.042831 GCCAGCTCGTTTCCATGCT 61.043 57.895 0.00 0.00 36.04 3.79
633 636 4.699522 GAACCGGGCAAGCTCCGT 62.700 66.667 6.32 1.26 45.51 4.69
649 652 5.990668 AGCTCCGTTTAGATTAGGTTTCAT 58.009 37.500 0.00 0.00 0.00 2.57
726 757 3.986006 GACCGGTCACTGTCCGCA 61.986 66.667 29.75 0.00 45.71 5.69
737 768 2.434185 GTCCGCAGACGCATCCAA 60.434 61.111 0.00 0.00 38.40 3.53
738 769 1.815421 GTCCGCAGACGCATCCAAT 60.815 57.895 0.00 0.00 38.40 3.16
764 795 2.833227 CGGGTGTTTGAGGGGTCA 59.167 61.111 0.00 0.00 0.00 4.02
774 805 0.329261 TGAGGGGTCAGATTTGCCAG 59.671 55.000 0.00 0.00 0.00 4.85
796 827 3.119424 GGTCCGGCTATAGATGCTCTAAC 60.119 52.174 3.21 0.00 31.96 2.34
797 828 3.090037 TCCGGCTATAGATGCTCTAACC 58.910 50.000 3.21 0.00 31.96 2.85
798 829 3.093057 CCGGCTATAGATGCTCTAACCT 58.907 50.000 3.21 0.00 31.96 3.50
799 830 3.129638 CCGGCTATAGATGCTCTAACCTC 59.870 52.174 3.21 0.00 31.96 3.85
800 831 4.013728 CGGCTATAGATGCTCTAACCTCT 58.986 47.826 3.21 0.00 31.96 3.69
801 832 4.095782 CGGCTATAGATGCTCTAACCTCTC 59.904 50.000 3.21 0.00 31.96 3.20
802 833 4.401202 GGCTATAGATGCTCTAACCTCTCC 59.599 50.000 3.21 0.00 31.96 3.71
803 834 5.013547 GCTATAGATGCTCTAACCTCTCCA 58.986 45.833 3.21 0.00 31.96 3.86
804 835 5.478679 GCTATAGATGCTCTAACCTCTCCAA 59.521 44.000 3.21 0.00 31.96 3.53
805 836 6.015010 GCTATAGATGCTCTAACCTCTCCAAA 60.015 42.308 3.21 0.00 31.96 3.28
806 837 6.814954 ATAGATGCTCTAACCTCTCCAAAA 57.185 37.500 0.00 0.00 31.96 2.44
807 838 5.505181 AGATGCTCTAACCTCTCCAAAAA 57.495 39.130 0.00 0.00 0.00 1.94
808 839 5.495640 AGATGCTCTAACCTCTCCAAAAAG 58.504 41.667 0.00 0.00 0.00 2.27
809 840 4.974645 TGCTCTAACCTCTCCAAAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
810 841 5.304686 TGCTCTAACCTCTCCAAAAAGAA 57.695 39.130 0.00 0.00 0.00 2.52
811 842 5.690865 TGCTCTAACCTCTCCAAAAAGAAA 58.309 37.500 0.00 0.00 0.00 2.52
812 843 6.306987 TGCTCTAACCTCTCCAAAAAGAAAT 58.693 36.000 0.00 0.00 0.00 2.17
813 844 7.458397 TGCTCTAACCTCTCCAAAAAGAAATA 58.542 34.615 0.00 0.00 0.00 1.40
814 845 8.109634 TGCTCTAACCTCTCCAAAAAGAAATAT 58.890 33.333 0.00 0.00 0.00 1.28
815 846 8.616942 GCTCTAACCTCTCCAAAAAGAAATATC 58.383 37.037 0.00 0.00 0.00 1.63
816 847 9.898152 CTCTAACCTCTCCAAAAAGAAATATCT 57.102 33.333 0.00 0.00 37.57 1.98
817 848 9.892130 TCTAACCTCTCCAAAAAGAAATATCTC 57.108 33.333 0.00 0.00 33.77 2.75
818 849 7.946381 AACCTCTCCAAAAAGAAATATCTCC 57.054 36.000 0.00 0.00 33.77 3.71
819 850 7.032598 ACCTCTCCAAAAAGAAATATCTCCA 57.967 36.000 0.00 0.00 33.77 3.86
820 851 7.646884 ACCTCTCCAAAAAGAAATATCTCCAT 58.353 34.615 0.00 0.00 33.77 3.41
821 852 8.118600 ACCTCTCCAAAAAGAAATATCTCCATT 58.881 33.333 0.00 0.00 33.77 3.16
822 853 8.411683 CCTCTCCAAAAAGAAATATCTCCATTG 58.588 37.037 0.00 0.00 33.77 2.82
823 854 9.182214 CTCTCCAAAAAGAAATATCTCCATTGA 57.818 33.333 0.00 0.00 33.77 2.57
824 855 9.532494 TCTCCAAAAAGAAATATCTCCATTGAA 57.468 29.630 0.00 0.00 33.77 2.69
825 856 9.578439 CTCCAAAAAGAAATATCTCCATTGAAC 57.422 33.333 0.00 0.00 33.77 3.18
826 857 9.087871 TCCAAAAAGAAATATCTCCATTGAACA 57.912 29.630 0.00 0.00 33.77 3.18
827 858 9.709495 CCAAAAAGAAATATCTCCATTGAACAA 57.291 29.630 0.00 0.00 33.77 2.83
846 877 7.987486 TGAACAATTAAAAATAAACTCACGCG 58.013 30.769 3.53 3.53 0.00 6.01
847 878 7.644551 TGAACAATTAAAAATAAACTCACGCGT 59.355 29.630 5.58 5.58 0.00 6.01
848 879 7.543127 ACAATTAAAAATAAACTCACGCGTC 57.457 32.000 9.86 0.00 0.00 5.19
849 880 7.133513 ACAATTAAAAATAAACTCACGCGTCA 58.866 30.769 9.86 0.00 0.00 4.35
850 881 7.644551 ACAATTAAAAATAAACTCACGCGTCAA 59.355 29.630 9.86 0.00 0.00 3.18
851 882 6.956393 TTAAAAATAAACTCACGCGTCAAC 57.044 33.333 9.86 0.00 0.00 3.18
852 883 3.531262 AAATAAACTCACGCGTCAACC 57.469 42.857 9.86 0.00 0.00 3.77
853 884 1.065358 ATAAACTCACGCGTCAACCG 58.935 50.000 9.86 0.00 40.40 4.44
862 893 2.953821 CGTCAACCGCATTTGGCT 59.046 55.556 0.00 0.00 41.67 4.75
863 894 1.154225 CGTCAACCGCATTTGGCTC 60.154 57.895 0.00 0.00 41.67 4.70
864 895 1.212751 GTCAACCGCATTTGGCTCC 59.787 57.895 0.00 0.00 41.67 4.70
865 896 1.976474 TCAACCGCATTTGGCTCCC 60.976 57.895 0.00 0.00 41.67 4.30
866 897 1.978617 CAACCGCATTTGGCTCCCT 60.979 57.895 0.00 0.00 41.67 4.20
867 898 1.978617 AACCGCATTTGGCTCCCTG 60.979 57.895 0.00 0.00 41.67 4.45
868 899 2.361610 CCGCATTTGGCTCCCTGT 60.362 61.111 0.00 0.00 41.67 4.00
869 900 1.077787 CCGCATTTGGCTCCCTGTA 60.078 57.895 0.00 0.00 41.67 2.74
870 901 1.376609 CCGCATTTGGCTCCCTGTAC 61.377 60.000 0.00 0.00 41.67 2.90
871 902 0.392998 CGCATTTGGCTCCCTGTACT 60.393 55.000 0.00 0.00 41.67 2.73
872 903 1.839424 GCATTTGGCTCCCTGTACTT 58.161 50.000 0.00 0.00 40.25 2.24
873 904 2.171003 GCATTTGGCTCCCTGTACTTT 58.829 47.619 0.00 0.00 40.25 2.66
874 905 2.164422 GCATTTGGCTCCCTGTACTTTC 59.836 50.000 0.00 0.00 40.25 2.62
875 906 2.178912 TTTGGCTCCCTGTACTTTCG 57.821 50.000 0.00 0.00 0.00 3.46
876 907 0.321298 TTGGCTCCCTGTACTTTCGC 60.321 55.000 0.00 0.00 0.00 4.70
877 908 1.295423 GGCTCCCTGTACTTTCGCA 59.705 57.895 0.00 0.00 0.00 5.10
878 909 0.107654 GGCTCCCTGTACTTTCGCAT 60.108 55.000 0.00 0.00 0.00 4.73
879 910 1.679032 GGCTCCCTGTACTTTCGCATT 60.679 52.381 0.00 0.00 0.00 3.56
880 911 1.398390 GCTCCCTGTACTTTCGCATTG 59.602 52.381 0.00 0.00 0.00 2.82
881 912 2.699954 CTCCCTGTACTTTCGCATTGT 58.300 47.619 0.00 0.00 0.00 2.71
882 913 3.857052 CTCCCTGTACTTTCGCATTGTA 58.143 45.455 0.00 0.00 0.00 2.41
883 914 4.442706 CTCCCTGTACTTTCGCATTGTAT 58.557 43.478 0.00 0.00 0.00 2.29
884 915 5.597806 CTCCCTGTACTTTCGCATTGTATA 58.402 41.667 0.00 0.00 0.00 1.47
885 916 6.169557 TCCCTGTACTTTCGCATTGTATAT 57.830 37.500 0.00 0.00 0.00 0.86
886 917 6.588204 TCCCTGTACTTTCGCATTGTATATT 58.412 36.000 0.00 0.00 0.00 1.28
887 918 6.481976 TCCCTGTACTTTCGCATTGTATATTG 59.518 38.462 0.00 0.00 0.00 1.90
888 919 6.260050 CCCTGTACTTTCGCATTGTATATTGT 59.740 38.462 0.00 0.00 0.00 2.71
889 920 7.201696 CCCTGTACTTTCGCATTGTATATTGTT 60.202 37.037 0.00 0.00 0.00 2.83
890 921 8.181573 CCTGTACTTTCGCATTGTATATTGTTT 58.818 33.333 0.00 0.00 0.00 2.83
891 922 9.210426 CTGTACTTTCGCATTGTATATTGTTTC 57.790 33.333 0.00 0.00 0.00 2.78
892 923 8.941977 TGTACTTTCGCATTGTATATTGTTTCT 58.058 29.630 0.00 0.00 0.00 2.52
893 924 9.422196 GTACTTTCGCATTGTATATTGTTTCTC 57.578 33.333 0.00 0.00 0.00 2.87
894 925 7.472543 ACTTTCGCATTGTATATTGTTTCTCC 58.527 34.615 0.00 0.00 0.00 3.71
895 926 7.336931 ACTTTCGCATTGTATATTGTTTCTCCT 59.663 33.333 0.00 0.00 0.00 3.69
896 927 6.844696 TCGCATTGTATATTGTTTCTCCTC 57.155 37.500 0.00 0.00 0.00 3.71
897 928 6.582636 TCGCATTGTATATTGTTTCTCCTCT 58.417 36.000 0.00 0.00 0.00 3.69
898 929 6.479990 TCGCATTGTATATTGTTTCTCCTCTG 59.520 38.462 0.00 0.00 0.00 3.35
899 930 6.433766 GCATTGTATATTGTTTCTCCTCTGC 58.566 40.000 0.00 0.00 0.00 4.26
900 931 6.261826 GCATTGTATATTGTTTCTCCTCTGCT 59.738 38.462 0.00 0.00 0.00 4.24
901 932 7.519649 GCATTGTATATTGTTTCTCCTCTGCTC 60.520 40.741 0.00 0.00 0.00 4.26
902 933 5.592054 TGTATATTGTTTCTCCTCTGCTCG 58.408 41.667 0.00 0.00 0.00 5.03
903 934 1.731720 ATTGTTTCTCCTCTGCTCGC 58.268 50.000 0.00 0.00 0.00 5.03
904 935 0.320771 TTGTTTCTCCTCTGCTCGCC 60.321 55.000 0.00 0.00 0.00 5.54
905 936 1.807573 GTTTCTCCTCTGCTCGCCG 60.808 63.158 0.00 0.00 0.00 6.46
906 937 3.006756 TTTCTCCTCTGCTCGCCGG 62.007 63.158 0.00 0.00 0.00 6.13
911 942 4.567385 CTCTGCTCGCCGGCTCTC 62.567 72.222 26.68 13.17 0.00 3.20
913 944 4.441695 CTGCTCGCCGGCTCTCAA 62.442 66.667 26.68 5.15 0.00 3.02
914 945 4.742201 TGCTCGCCGGCTCTCAAC 62.742 66.667 26.68 8.32 0.00 3.18
915 946 4.443266 GCTCGCCGGCTCTCAACT 62.443 66.667 26.68 0.00 0.00 3.16
916 947 2.202676 CTCGCCGGCTCTCAACTC 60.203 66.667 26.68 0.00 0.00 3.01
917 948 2.676822 TCGCCGGCTCTCAACTCT 60.677 61.111 26.68 0.00 0.00 3.24
918 949 2.202676 CGCCGGCTCTCAACTCTC 60.203 66.667 26.68 0.00 0.00 3.20
919 950 2.973899 GCCGGCTCTCAACTCTCA 59.026 61.111 22.15 0.00 0.00 3.27
920 951 1.293498 GCCGGCTCTCAACTCTCAA 59.707 57.895 22.15 0.00 0.00 3.02
921 952 1.016653 GCCGGCTCTCAACTCTCAAC 61.017 60.000 22.15 0.00 0.00 3.18
922 953 0.318441 CCGGCTCTCAACTCTCAACA 59.682 55.000 0.00 0.00 0.00 3.33
923 954 1.066573 CCGGCTCTCAACTCTCAACAT 60.067 52.381 0.00 0.00 0.00 2.71
924 955 2.266554 CGGCTCTCAACTCTCAACATC 58.733 52.381 0.00 0.00 0.00 3.06
925 956 2.626840 GGCTCTCAACTCTCAACATCC 58.373 52.381 0.00 0.00 0.00 3.51
926 957 2.626840 GCTCTCAACTCTCAACATCCC 58.373 52.381 0.00 0.00 0.00 3.85
927 958 2.235898 GCTCTCAACTCTCAACATCCCT 59.764 50.000 0.00 0.00 0.00 4.20
928 959 3.859443 CTCTCAACTCTCAACATCCCTG 58.141 50.000 0.00 0.00 0.00 4.45
929 960 2.568956 TCTCAACTCTCAACATCCCTGG 59.431 50.000 0.00 0.00 0.00 4.45
930 961 1.003580 TCAACTCTCAACATCCCTGGC 59.996 52.381 0.00 0.00 0.00 4.85
931 962 1.004044 CAACTCTCAACATCCCTGGCT 59.996 52.381 0.00 0.00 0.00 4.75
932 963 0.908198 ACTCTCAACATCCCTGGCTC 59.092 55.000 0.00 0.00 0.00 4.70
933 964 0.179936 CTCTCAACATCCCTGGCTCC 59.820 60.000 0.00 0.00 0.00 4.70
934 965 1.225704 CTCAACATCCCTGGCTCCC 59.774 63.158 0.00 0.00 0.00 4.30
935 966 1.229951 TCAACATCCCTGGCTCCCT 60.230 57.895 0.00 0.00 0.00 4.20
936 967 1.077212 CAACATCCCTGGCTCCCTG 60.077 63.158 0.00 0.00 0.00 4.45
937 968 1.542375 AACATCCCTGGCTCCCTGT 60.542 57.895 0.00 0.00 0.00 4.00
938 969 0.253160 AACATCCCTGGCTCCCTGTA 60.253 55.000 0.00 0.00 0.00 2.74
939 970 0.983378 ACATCCCTGGCTCCCTGTAC 60.983 60.000 0.00 0.00 0.00 2.90
940 971 0.692419 CATCCCTGGCTCCCTGTACT 60.692 60.000 0.00 0.00 0.00 2.73
941 972 0.044855 ATCCCTGGCTCCCTGTACTT 59.955 55.000 0.00 0.00 0.00 2.24
942 973 0.178873 TCCCTGGCTCCCTGTACTTT 60.179 55.000 0.00 0.00 0.00 2.66
943 974 0.253327 CCCTGGCTCCCTGTACTTTC 59.747 60.000 0.00 0.00 0.00 2.62
944 975 0.108138 CCTGGCTCCCTGTACTTTCG 60.108 60.000 0.00 0.00 0.00 3.46
945 976 0.741221 CTGGCTCCCTGTACTTTCGC 60.741 60.000 0.00 0.00 0.00 4.70
946 977 1.295423 GGCTCCCTGTACTTTCGCA 59.705 57.895 0.00 0.00 0.00 5.10
947 978 0.107654 GGCTCCCTGTACTTTCGCAT 60.108 55.000 0.00 0.00 0.00 4.73
948 979 1.679032 GGCTCCCTGTACTTTCGCATT 60.679 52.381 0.00 0.00 0.00 3.56
949 980 1.398390 GCTCCCTGTACTTTCGCATTG 59.602 52.381 0.00 0.00 0.00 2.82
950 981 2.699954 CTCCCTGTACTTTCGCATTGT 58.300 47.619 0.00 0.00 0.00 2.71
951 982 3.857052 CTCCCTGTACTTTCGCATTGTA 58.143 45.455 0.00 0.00 0.00 2.41
952 983 4.442706 CTCCCTGTACTTTCGCATTGTAT 58.557 43.478 0.00 0.00 0.00 2.29
953 984 5.597806 CTCCCTGTACTTTCGCATTGTATA 58.402 41.667 0.00 0.00 0.00 1.47
954 985 6.169557 TCCCTGTACTTTCGCATTGTATAT 57.830 37.500 0.00 0.00 0.00 0.86
955 986 6.588204 TCCCTGTACTTTCGCATTGTATATT 58.412 36.000 0.00 0.00 0.00 1.28
956 987 6.481976 TCCCTGTACTTTCGCATTGTATATTG 59.518 38.462 0.00 0.00 0.00 1.90
957 988 6.260050 CCCTGTACTTTCGCATTGTATATTGT 59.740 38.462 0.00 0.00 0.00 2.71
973 1004 7.353525 TGTATATTGTTTCCTCCATTGACCAT 58.646 34.615 0.00 0.00 0.00 3.55
982 1018 1.138859 TCCATTGACCATCGCTCGAAT 59.861 47.619 0.00 0.00 0.00 3.34
983 1019 2.364002 TCCATTGACCATCGCTCGAATA 59.636 45.455 0.00 0.00 0.00 1.75
1053 1089 3.370846 CCATCCTTGCAACACTCCTGATA 60.371 47.826 0.00 0.00 0.00 2.15
1059 1095 6.070251 TCCTTGCAACACTCCTGATAGATAAA 60.070 38.462 0.00 0.00 0.00 1.40
1098 1134 2.203070 GTCGGGCTTGCCGATGAT 60.203 61.111 5.86 0.00 41.71 2.45
1118 1154 1.946768 TGTTGAAAAGCTCAAGTCGGG 59.053 47.619 0.00 0.00 44.83 5.14
1126 1162 1.826024 CTCAAGTCGGGGATCAGGG 59.174 63.158 0.00 0.00 0.00 4.45
1128 1164 3.090532 AAGTCGGGGATCAGGGGC 61.091 66.667 0.00 0.00 0.00 5.80
1129 1165 3.943137 AAGTCGGGGATCAGGGGCA 62.943 63.158 0.00 0.00 0.00 5.36
1209 1245 3.011566 TCTCTCGCTCTTCTCAAGGAT 57.988 47.619 0.00 0.00 0.00 3.24
1211 1247 2.951642 CTCTCGCTCTTCTCAAGGATCT 59.048 50.000 0.00 0.00 0.00 2.75
1221 1257 3.826524 TCTCAAGGATCTGCTCTACGAT 58.173 45.455 0.00 0.00 0.00 3.73
1230 1266 1.283181 GCTCTACGATGCCGACGAT 59.717 57.895 0.00 0.00 39.50 3.73
1278 1314 3.063510 CTCCAAGAGCAAGTTCATGGA 57.936 47.619 9.86 9.86 41.30 3.41
1280 1316 2.089980 CCAAGAGCAAGTTCATGGAGG 58.910 52.381 2.53 0.00 38.00 4.30
1281 1317 2.553904 CCAAGAGCAAGTTCATGGAGGT 60.554 50.000 2.53 0.00 38.00 3.85
1282 1318 2.486472 AGAGCAAGTTCATGGAGGTG 57.514 50.000 0.00 0.00 0.00 4.00
1290 1326 1.134788 GTTCATGGAGGTGGAGGTACG 60.135 57.143 0.00 0.00 0.00 3.67
1332 1502 5.926214 CAGATCTGCTGGTTTGATCATAG 57.074 43.478 10.38 0.00 41.07 2.23
1340 1510 4.381292 GCTGGTTTGATCATAGCTTGCTTT 60.381 41.667 14.97 0.00 0.00 3.51
1343 1513 6.179756 TGGTTTGATCATAGCTTGCTTTAGA 58.820 36.000 14.97 0.00 0.00 2.10
1344 1514 6.658816 TGGTTTGATCATAGCTTGCTTTAGAA 59.341 34.615 14.97 0.00 0.00 2.10
1403 1582 5.612725 TGCTTTTCTGGTCCATTTTTCTT 57.387 34.783 0.00 0.00 0.00 2.52
1404 1583 5.358922 TGCTTTTCTGGTCCATTTTTCTTG 58.641 37.500 0.00 0.00 0.00 3.02
1432 1639 0.606604 TTACAAGGGACGAGCCAGTC 59.393 55.000 0.00 0.91 38.95 3.51
1446 1653 5.070770 GAGCCAGTCGATGAGATATCAAT 57.929 43.478 5.32 0.00 0.00 2.57
1450 1657 4.502016 CAGTCGATGAGATATCAATGGGG 58.498 47.826 5.32 0.00 0.00 4.96
1457 1664 3.009805 TGAGATATCAATGGGGGATGCTG 59.990 47.826 5.32 0.00 0.00 4.41
1458 1665 3.262842 AGATATCAATGGGGGATGCTGA 58.737 45.455 5.32 0.00 0.00 4.26
1459 1666 2.957402 TATCAATGGGGGATGCTGAC 57.043 50.000 0.00 0.00 0.00 3.51
1460 1667 0.928505 ATCAATGGGGGATGCTGACA 59.071 50.000 0.00 0.00 0.00 3.58
1461 1668 0.034186 TCAATGGGGGATGCTGACAC 60.034 55.000 0.00 0.00 0.00 3.67
1462 1669 0.323633 CAATGGGGGATGCTGACACA 60.324 55.000 0.00 0.00 0.00 3.72
1463 1670 0.323725 AATGGGGGATGCTGACACAC 60.324 55.000 0.00 0.00 0.00 3.82
1464 1671 1.210204 ATGGGGGATGCTGACACACT 61.210 55.000 0.00 0.00 0.00 3.55
1465 1672 1.377725 GGGGGATGCTGACACACTG 60.378 63.158 0.00 0.00 0.00 3.66
1466 1673 1.679311 GGGGATGCTGACACACTGA 59.321 57.895 0.00 0.00 0.00 3.41
1467 1674 0.036732 GGGGATGCTGACACACTGAA 59.963 55.000 0.00 0.00 0.00 3.02
1470 1677 3.201290 GGGATGCTGACACACTGAATAG 58.799 50.000 0.00 0.00 0.00 1.73
1482 1689 1.089920 CTGAATAGCAGTGGTGGCAC 58.910 55.000 9.70 9.70 39.85 5.01
1494 1701 1.079681 GTGGCACATTACGGTCCGA 60.080 57.895 20.51 0.00 44.52 4.55
1502 1709 1.958579 CATTACGGTCCGAGGTATGGA 59.041 52.381 20.51 0.00 0.00 3.41
1525 1732 6.851330 GGAAACACTTTACGATCACAGAAAAG 59.149 38.462 0.00 0.00 34.19 2.27
1539 1746 4.455877 CACAGAAAAGGATAACGGAAAGCT 59.544 41.667 0.00 0.00 0.00 3.74
1540 1747 5.048713 CACAGAAAAGGATAACGGAAAGCTT 60.049 40.000 0.00 0.00 0.00 3.74
1541 1748 6.148811 CACAGAAAAGGATAACGGAAAGCTTA 59.851 38.462 0.00 0.00 0.00 3.09
1542 1749 6.713450 ACAGAAAAGGATAACGGAAAGCTTAA 59.287 34.615 0.00 0.00 0.00 1.85
1566 1778 6.230472 ACAAAGCAATATGTAGACACTGTGA 58.770 36.000 15.86 0.00 0.00 3.58
1569 1781 5.414360 AGCAATATGTAGACACTGTGACAG 58.586 41.667 15.86 11.70 37.52 3.51
1604 1816 3.255395 TGATACGAAGACCAACGGTACAA 59.745 43.478 0.00 0.00 35.25 2.41
1630 1842 9.300681 ACATCTATGAGAAAACATTTGGAGAAA 57.699 29.630 0.00 0.00 0.00 2.52
1633 1845 9.573166 TCTATGAGAAAACATTTGGAGAAAGAA 57.427 29.630 0.00 0.00 0.00 2.52
1642 1854 6.001460 ACATTTGGAGAAAGAACATTCCGTA 58.999 36.000 0.00 0.00 32.27 4.02
1647 1859 6.059484 TGGAGAAAGAACATTCCGTAACTTT 58.941 36.000 0.00 0.00 37.19 2.66
1650 1862 8.727910 GGAGAAAGAACATTCCGTAACTTTTAT 58.272 33.333 0.00 0.00 35.74 1.40
1699 1914 7.501225 CCAAACTCTTCAAGGTACCTAAAGAAA 59.499 37.037 27.28 14.86 0.00 2.52
1703 1918 9.067986 ACTCTTCAAGGTACCTAAAGAAAATTG 57.932 33.333 27.28 20.92 0.00 2.32
1704 1919 9.284968 CTCTTCAAGGTACCTAAAGAAAATTGA 57.715 33.333 27.28 17.56 0.00 2.57
1733 1997 6.161855 TCGTTTATATGCATCTCCTTGAGT 57.838 37.500 0.19 0.00 0.00 3.41
1747 2033 1.003580 CTTGAGTGCACTACCCACCAT 59.996 52.381 21.73 0.00 33.75 3.55
1750 2036 2.158534 TGAGTGCACTACCCACCATTTT 60.159 45.455 21.73 0.00 33.75 1.82
1751 2037 2.890945 GAGTGCACTACCCACCATTTTT 59.109 45.455 21.73 0.00 33.75 1.94
1772 2058 4.071961 TCTTTTCTTACTGCAGCACTGA 57.928 40.909 15.27 4.36 0.00 3.41
1790 2076 5.278169 GCACTGATGAGCCTATTGTAATTGG 60.278 44.000 1.42 1.42 34.90 3.16
1805 2091 5.022122 TGTAATTGGCAAATCATCCAGGAA 58.978 37.500 3.01 0.00 33.32 3.36
1812 2101 4.931601 GGCAAATCATCCAGGAAAAGAAAC 59.068 41.667 0.00 0.00 0.00 2.78
1818 2107 4.642885 TCATCCAGGAAAAGAAACAAACGT 59.357 37.500 0.00 0.00 0.00 3.99
1819 2108 5.126384 TCATCCAGGAAAAGAAACAAACGTT 59.874 36.000 0.00 0.00 0.00 3.99
1827 2116 4.729227 AAGAAACAAACGTTGGTCCAAT 57.271 36.364 9.19 0.00 34.12 3.16
1848 2137 6.342906 CAATGCATGGGATACTTTTGATGTT 58.657 36.000 0.00 0.00 0.00 2.71
1849 2138 7.417683 CCAATGCATGGGATACTTTTGATGTTA 60.418 37.037 15.84 0.00 46.27 2.41
1850 2139 7.844493 ATGCATGGGATACTTTTGATGTTAT 57.156 32.000 0.00 0.00 0.00 1.89
1900 2190 5.500234 TCAAGCAAGATGTAAATACTGCCT 58.500 37.500 0.00 0.00 0.00 4.75
1917 2207 2.011046 GCCTCACAGAGATCAAGTGCC 61.011 57.143 0.00 0.00 33.44 5.01
1919 2209 0.247460 TCACAGAGATCAAGTGCCGG 59.753 55.000 0.00 0.00 33.44 6.13
1920 2210 0.742281 CACAGAGATCAAGTGCCGGG 60.742 60.000 2.18 0.00 0.00 5.73
1922 2212 2.268920 GAGATCAAGTGCCGGGCA 59.731 61.111 19.77 19.77 35.60 5.36
1925 2215 1.212751 GATCAAGTGCCGGGCAAAC 59.787 57.895 25.70 12.77 41.47 2.93
1935 2225 2.282887 GGGCAAACACCGGGACAT 60.283 61.111 6.32 0.00 0.00 3.06
1954 2244 3.949754 ACATCAGGTATGCTCAACCATTG 59.050 43.478 5.65 3.10 39.39 2.82
1955 2245 3.719268 TCAGGTATGCTCAACCATTGT 57.281 42.857 5.65 0.00 39.64 2.71
1964 2254 6.594788 ATGCTCAACCATTGTAAGATTTGT 57.405 33.333 0.00 0.00 0.00 2.83
2020 2320 3.281727 CCTATCAAGGTAGGCAAAGCA 57.718 47.619 0.00 0.00 38.19 3.91
2038 2338 4.700268 AGCATGCATCGACACATTTTTA 57.300 36.364 21.98 0.00 0.00 1.52
2042 2342 5.572511 GCATGCATCGACACATTTTTAGAAA 59.427 36.000 14.21 0.00 0.00 2.52
2044 2344 7.514125 GCATGCATCGACACATTTTTAGAAATC 60.514 37.037 14.21 0.00 33.25 2.17
2045 2345 6.907741 TGCATCGACACATTTTTAGAAATCA 58.092 32.000 0.00 0.00 33.25 2.57
2047 2347 7.485595 TGCATCGACACATTTTTAGAAATCATG 59.514 33.333 0.00 0.00 33.25 3.07
2049 2349 9.003112 CATCGACACATTTTTAGAAATCATGTC 57.997 33.333 15.94 15.94 40.68 3.06
2051 2351 8.443160 TCGACACATTTTTAGAAATCATGTCTC 58.557 33.333 19.92 4.68 41.22 3.36
2052 2352 7.423598 CGACACATTTTTAGAAATCATGTCTCG 59.576 37.037 19.92 10.34 41.22 4.04
2053 2353 7.023575 ACACATTTTTAGAAATCATGTCTCGC 58.976 34.615 0.00 0.00 33.25 5.03
2073 2386 3.003689 CGCTGGTTCTAATAGCCAATTGG 59.996 47.826 20.81 20.81 38.11 3.16
2097 2414 3.332761 TGTTTTTCTTACTGCAGCACG 57.667 42.857 15.27 0.00 0.00 5.34
2155 2475 6.500684 TTGGTGATTCATCTAGCAGAAAAC 57.499 37.500 0.00 3.84 0.00 2.43
2166 2486 5.008331 TCTAGCAGAAAACGAAGGAGAGTA 58.992 41.667 0.00 0.00 0.00 2.59
2168 2488 2.668945 GCAGAAAACGAAGGAGAGTAGC 59.331 50.000 0.00 0.00 0.00 3.58
2179 2499 2.021457 GGAGAGTAGCTGAGGAGTCAC 58.979 57.143 0.00 0.00 0.00 3.67
2209 2532 2.038426 ACTGCAGCTAATACACACACCA 59.962 45.455 15.27 0.00 0.00 4.17
2210 2533 3.273434 CTGCAGCTAATACACACACCAT 58.727 45.455 0.00 0.00 0.00 3.55
2274 2597 6.992063 ATTAAGCAGTTACAAGACATCCAG 57.008 37.500 0.00 0.00 0.00 3.86
2306 2629 2.675317 GCGAGGTTCTCAAGCTACATGT 60.675 50.000 2.69 2.69 39.77 3.21
2310 2639 4.826556 AGGTTCTCAAGCTACATGTCTTC 58.173 43.478 0.00 0.00 37.49 2.87
2313 2642 4.727507 TCTCAAGCTACATGTCTTCTCC 57.272 45.455 0.00 0.00 0.00 3.71
2346 2675 2.171027 TCACAACCGGAGTACAACCTTT 59.829 45.455 9.46 0.00 0.00 3.11
2378 2707 4.627467 CCTAAGGACATCAAGTCTTGTTCG 59.373 45.833 12.30 5.06 46.72 3.95
2391 2720 4.023021 AGTCTTGTTCGAGGAGAAGTGTAC 60.023 45.833 0.00 0.00 39.95 2.90
2407 2736 2.731976 GTGTACGGAAGAGTTGCAGAAG 59.268 50.000 0.00 0.00 0.00 2.85
2417 2746 3.389329 AGAGTTGCAGAAGAGAACTCCAA 59.611 43.478 8.48 0.00 44.46 3.53
2418 2747 4.130118 GAGTTGCAGAAGAGAACTCCAAA 58.870 43.478 0.00 0.00 39.72 3.28
2464 2793 8.237811 AGAAAAATCTGATGGTGTAGTTGTTT 57.762 30.769 0.00 0.00 0.00 2.83
2522 2851 6.017934 ACAACACTTGCTCAACTTGTATACAG 60.018 38.462 5.56 3.51 0.00 2.74
2557 2886 0.678950 ACGCCAATTTGACCAAAGGG 59.321 50.000 0.00 10.04 41.29 3.95
2574 2903 1.835531 AGGGTATAGGTTTGGGTGTCG 59.164 52.381 0.00 0.00 0.00 4.35
2606 2935 2.299297 ACGAAGTGAGACTAACAAGGGG 59.701 50.000 0.00 0.00 42.51 4.79
2620 2949 5.853572 AACAAGGGGGATGTTAAACTCTA 57.146 39.130 0.00 0.00 39.14 2.43
2626 2955 6.663734 AGGGGGATGTTAAACTCTATTTCTG 58.336 40.000 0.00 0.00 0.00 3.02
2628 2957 5.299531 GGGGATGTTAAACTCTATTTCTGGC 59.700 44.000 0.00 0.00 0.00 4.85
2662 2991 6.260050 TGAAGAAATAAACTGTCTTGCGAAGT 59.740 34.615 0.00 0.00 31.80 3.01
2741 3076 4.460034 TGATGTTTGGGATGACATGAACAG 59.540 41.667 0.00 0.00 36.67 3.16
2839 3174 7.133891 ACTAGAAATATGTCTGTTGCACAAC 57.866 36.000 5.60 6.57 41.50 3.32
2919 3254 2.376915 TGTTCAAATCACGTGCGTTC 57.623 45.000 11.67 0.00 0.00 3.95
2964 3305 5.986135 GCATCAAAGTCTAAGTATCATCGGT 59.014 40.000 0.00 0.00 0.00 4.69
2976 3317 0.464036 TCATCGGTCGGCAAATAGCT 59.536 50.000 0.00 0.00 44.79 3.32
3009 3350 1.301677 GCAACCCACTAGCAGCTGTC 61.302 60.000 16.64 7.83 0.00 3.51
3070 3411 8.893727 CCGATTATTGGAGAAACATTCTAAAGT 58.106 33.333 0.00 0.00 40.87 2.66
3099 3440 1.282738 TGGAAATCCATGCAGCTCAGA 59.717 47.619 0.00 0.00 42.01 3.27
3105 3446 1.335882 CCATGCAGCTCAGAGGAGGA 61.336 60.000 0.00 0.00 41.67 3.71
3108 3449 1.283347 TGCAGCTCAGAGGAGGAATT 58.717 50.000 0.00 0.00 41.67 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.448985 TTTGCTTATCGTGGAGGCAC 58.551 50.000 0.00 0.00 32.47 5.01
2 3 2.418368 ATTTGCTTATCGTGGAGGCA 57.582 45.000 0.00 0.00 0.00 4.75
3 4 3.815401 ACATATTTGCTTATCGTGGAGGC 59.185 43.478 0.00 0.00 0.00 4.70
5 6 4.319766 GGCACATATTTGCTTATCGTGGAG 60.320 45.833 13.29 0.00 42.56 3.86
6 7 3.563808 GGCACATATTTGCTTATCGTGGA 59.436 43.478 13.29 0.00 42.56 4.02
7 8 3.565482 AGGCACATATTTGCTTATCGTGG 59.435 43.478 13.29 0.00 42.56 4.94
8 9 4.512944 AGAGGCACATATTTGCTTATCGTG 59.487 41.667 13.29 0.00 42.56 4.35
9 10 4.708177 AGAGGCACATATTTGCTTATCGT 58.292 39.130 13.29 0.00 42.56 3.73
10 11 5.274881 GAGAGGCACATATTTGCTTATCG 57.725 43.478 13.29 0.00 42.56 2.92
11 12 4.752101 ACGAGAGGCACATATTTGCTTATC 59.248 41.667 13.29 11.41 42.56 1.75
12 13 4.512944 CACGAGAGGCACATATTTGCTTAT 59.487 41.667 13.29 3.26 42.56 1.73
13 14 3.871006 CACGAGAGGCACATATTTGCTTA 59.129 43.478 13.29 0.00 42.56 3.09
14 15 2.679837 CACGAGAGGCACATATTTGCTT 59.320 45.455 13.29 5.98 42.56 3.91
15 16 2.093500 TCACGAGAGGCACATATTTGCT 60.093 45.455 13.29 0.24 42.56 3.91
16 17 2.279741 TCACGAGAGGCACATATTTGC 58.720 47.619 5.23 5.23 42.18 3.68
17 18 4.631377 TCTTTCACGAGAGGCACATATTTG 59.369 41.667 0.00 0.00 0.00 2.32
18 19 4.832248 TCTTTCACGAGAGGCACATATTT 58.168 39.130 0.00 0.00 0.00 1.40
19 20 4.471904 TCTTTCACGAGAGGCACATATT 57.528 40.909 0.00 0.00 0.00 1.28
20 21 4.471904 TTCTTTCACGAGAGGCACATAT 57.528 40.909 0.00 0.00 0.00 1.78
21 22 3.953712 TTCTTTCACGAGAGGCACATA 57.046 42.857 0.00 0.00 0.00 2.29
22 23 2.839486 TTCTTTCACGAGAGGCACAT 57.161 45.000 0.00 0.00 0.00 3.21
23 24 2.613026 TTTCTTTCACGAGAGGCACA 57.387 45.000 0.00 0.00 0.00 4.57
24 25 3.131396 TCTTTTCTTTCACGAGAGGCAC 58.869 45.455 0.00 0.00 0.00 5.01
25 26 3.469008 TCTTTTCTTTCACGAGAGGCA 57.531 42.857 0.00 0.00 0.00 4.75
26 27 3.560068 TGTTCTTTTCTTTCACGAGAGGC 59.440 43.478 0.00 0.00 0.00 4.70
27 28 5.334414 CCATGTTCTTTTCTTTCACGAGAGG 60.334 44.000 0.00 0.00 0.00 3.69
28 29 5.237344 ACCATGTTCTTTTCTTTCACGAGAG 59.763 40.000 0.00 0.00 0.00 3.20
29 30 5.123227 ACCATGTTCTTTTCTTTCACGAGA 58.877 37.500 0.00 0.00 0.00 4.04
30 31 5.424121 ACCATGTTCTTTTCTTTCACGAG 57.576 39.130 0.00 0.00 0.00 4.18
31 32 5.828299 AACCATGTTCTTTTCTTTCACGA 57.172 34.783 0.00 0.00 0.00 4.35
32 33 6.885735 AAAACCATGTTCTTTTCTTTCACG 57.114 33.333 0.00 0.00 0.00 4.35
57 58 1.559682 GGCATAACTGTCCCTCTTGGA 59.440 52.381 0.00 0.00 42.41 3.53
58 59 1.561542 AGGCATAACTGTCCCTCTTGG 59.438 52.381 0.00 0.00 0.00 3.61
59 60 2.911484 GAGGCATAACTGTCCCTCTTG 58.089 52.381 0.00 0.00 40.51 3.02
62 63 1.067821 CGAGAGGCATAACTGTCCCTC 59.932 57.143 0.00 0.00 43.29 4.30
63 64 1.115467 CGAGAGGCATAACTGTCCCT 58.885 55.000 0.00 0.00 0.00 4.20
64 65 0.530870 GCGAGAGGCATAACTGTCCC 60.531 60.000 0.00 0.00 42.87 4.46
65 66 2.979130 GCGAGAGGCATAACTGTCC 58.021 57.895 0.00 0.00 42.87 4.02
83 84 7.147312 TCAGGAGAAACACATATTTGCTTTTG 58.853 34.615 0.00 0.00 0.00 2.44
84 85 7.288810 TCAGGAGAAACACATATTTGCTTTT 57.711 32.000 0.00 0.00 0.00 2.27
85 86 6.899393 TCAGGAGAAACACATATTTGCTTT 57.101 33.333 0.00 0.00 0.00 3.51
86 87 6.899393 TTCAGGAGAAACACATATTTGCTT 57.101 33.333 0.00 0.00 0.00 3.91
87 88 6.716628 TCTTTCAGGAGAAACACATATTTGCT 59.283 34.615 0.00 0.00 38.76 3.91
88 89 6.913170 TCTTTCAGGAGAAACACATATTTGC 58.087 36.000 0.00 0.00 38.76 3.68
89 90 9.748708 TTTTCTTTCAGGAGAAACACATATTTG 57.251 29.630 0.00 0.00 43.32 2.32
130 131 4.676196 GCATAACGGTACCTCTCGAAAAGA 60.676 45.833 10.90 0.00 0.00 2.52
131 132 3.550678 GCATAACGGTACCTCTCGAAAAG 59.449 47.826 10.90 0.00 0.00 2.27
132 133 3.514645 GCATAACGGTACCTCTCGAAAA 58.485 45.455 10.90 0.00 0.00 2.29
133 134 2.159198 GGCATAACGGTACCTCTCGAAA 60.159 50.000 10.90 0.00 0.00 3.46
134 135 1.406539 GGCATAACGGTACCTCTCGAA 59.593 52.381 10.90 0.00 0.00 3.71
135 136 1.027357 GGCATAACGGTACCTCTCGA 58.973 55.000 10.90 0.00 0.00 4.04
136 137 1.001597 GAGGCATAACGGTACCTCTCG 60.002 57.143 10.90 0.00 44.41 4.04
137 138 2.797074 GAGGCATAACGGTACCTCTC 57.203 55.000 10.90 0.92 44.41 3.20
140 141 1.755380 GTCAGAGGCATAACGGTACCT 59.245 52.381 10.90 0.00 34.43 3.08
141 142 1.535437 CGTCAGAGGCATAACGGTACC 60.535 57.143 0.16 0.16 0.00 3.34
142 143 1.836383 CGTCAGAGGCATAACGGTAC 58.164 55.000 0.00 0.00 0.00 3.34
146 147 1.560923 CTTCCGTCAGAGGCATAACG 58.439 55.000 0.00 0.00 35.01 3.18
147 148 1.291132 GCTTCCGTCAGAGGCATAAC 58.709 55.000 0.00 0.00 46.54 1.89
148 149 3.760693 GCTTCCGTCAGAGGCATAA 57.239 52.632 0.00 0.00 46.54 1.90
153 154 1.151668 CAGTTTGCTTCCGTCAGAGG 58.848 55.000 0.00 0.00 0.00 3.69
154 155 0.514691 GCAGTTTGCTTCCGTCAGAG 59.485 55.000 0.00 0.00 40.96 3.35
155 156 2.616969 GCAGTTTGCTTCCGTCAGA 58.383 52.632 0.00 0.00 40.96 3.27
165 166 0.944386 TTCTCGTGGAAGCAGTTTGC 59.056 50.000 0.00 0.00 45.46 3.68
166 167 2.957576 CTTCTCGTGGAAGCAGTTTG 57.042 50.000 7.65 0.00 43.88 2.93
174 175 4.380444 GGCATAAATTTGCTTCTCGTGGAA 60.380 41.667 0.00 0.00 42.38 3.53
175 176 3.128589 GGCATAAATTTGCTTCTCGTGGA 59.871 43.478 0.00 0.00 42.38 4.02
176 177 3.129287 AGGCATAAATTTGCTTCTCGTGG 59.871 43.478 0.00 0.00 42.38 4.94
177 178 4.346129 GAGGCATAAATTTGCTTCTCGTG 58.654 43.478 0.00 0.00 43.28 4.35
178 179 4.622701 GAGGCATAAATTTGCTTCTCGT 57.377 40.909 0.00 0.00 43.28 4.18
182 183 4.094887 TCGTGAGAGGCATAAATTTGCTTC 59.905 41.667 6.20 6.20 46.00 3.86
183 184 4.009675 TCGTGAGAGGCATAAATTTGCTT 58.990 39.130 0.00 0.00 37.78 3.91
184 185 3.609853 TCGTGAGAGGCATAAATTTGCT 58.390 40.909 0.00 0.00 37.78 3.91
185 186 4.355543 TTCGTGAGAGGCATAAATTTGC 57.644 40.909 0.00 0.00 43.69 3.68
186 187 4.795278 GCTTTCGTGAGAGGCATAAATTTG 59.205 41.667 0.00 0.00 43.69 2.32
187 188 4.458989 TGCTTTCGTGAGAGGCATAAATTT 59.541 37.500 0.00 0.00 42.51 1.82
188 189 4.009675 TGCTTTCGTGAGAGGCATAAATT 58.990 39.130 0.00 0.00 42.51 1.82
189 190 3.609853 TGCTTTCGTGAGAGGCATAAAT 58.390 40.909 0.00 0.00 42.51 1.40
190 191 3.052455 TGCTTTCGTGAGAGGCATAAA 57.948 42.857 0.00 0.00 42.51 1.40
191 192 2.760634 TGCTTTCGTGAGAGGCATAA 57.239 45.000 0.00 0.00 42.51 1.90
192 193 2.760634 TTGCTTTCGTGAGAGGCATA 57.239 45.000 0.00 0.00 45.05 3.14
193 194 1.896220 TTTGCTTTCGTGAGAGGCAT 58.104 45.000 0.00 0.00 45.05 4.40
194 195 1.806542 GATTTGCTTTCGTGAGAGGCA 59.193 47.619 0.00 0.00 44.45 4.75
195 196 1.806542 TGATTTGCTTTCGTGAGAGGC 59.193 47.619 0.00 0.00 43.69 4.70
196 197 3.181503 CCATGATTTGCTTTCGTGAGAGG 60.182 47.826 0.00 0.00 43.69 3.69
197 198 3.181503 CCCATGATTTGCTTTCGTGAGAG 60.182 47.826 0.00 0.00 43.69 3.20
198 199 2.749076 CCCATGATTTGCTTTCGTGAGA 59.251 45.455 0.00 0.00 32.89 3.27
199 200 2.733227 GCCCATGATTTGCTTTCGTGAG 60.733 50.000 0.00 0.00 32.89 3.51
200 201 1.202114 GCCCATGATTTGCTTTCGTGA 59.798 47.619 0.00 0.00 32.89 4.35
201 202 1.632422 GCCCATGATTTGCTTTCGTG 58.368 50.000 0.00 0.00 0.00 4.35
202 203 0.532115 GGCCCATGATTTGCTTTCGT 59.468 50.000 0.00 0.00 0.00 3.85
203 204 0.819582 AGGCCCATGATTTGCTTTCG 59.180 50.000 0.00 0.00 0.00 3.46
204 205 1.202336 CGAGGCCCATGATTTGCTTTC 60.202 52.381 0.00 0.00 0.00 2.62
205 206 0.819582 CGAGGCCCATGATTTGCTTT 59.180 50.000 0.00 0.00 0.00 3.51
206 207 0.323725 ACGAGGCCCATGATTTGCTT 60.324 50.000 0.00 0.00 0.00 3.91
207 208 0.749454 GACGAGGCCCATGATTTGCT 60.749 55.000 0.00 0.00 0.00 3.91
208 209 1.729881 GACGAGGCCCATGATTTGC 59.270 57.895 0.00 0.00 0.00 3.68
209 210 1.439353 CCGACGAGGCCCATGATTTG 61.439 60.000 0.00 0.00 0.00 2.32
210 211 1.153168 CCGACGAGGCCCATGATTT 60.153 57.895 0.00 0.00 0.00 2.17
211 212 2.063979 TCCGACGAGGCCCATGATT 61.064 57.895 0.00 0.00 40.77 2.57
212 213 2.443952 TCCGACGAGGCCCATGAT 60.444 61.111 0.00 0.00 40.77 2.45
213 214 3.458163 GTCCGACGAGGCCCATGA 61.458 66.667 0.00 0.00 40.77 3.07
227 228 3.918253 TTGTGCCATGGCCTCGTCC 62.918 63.158 33.44 14.29 41.09 4.79
302 303 1.674651 CTCCTCCTCACCGACGTCA 60.675 63.158 17.16 0.00 0.00 4.35
333 334 1.227263 GATGCGTCATACAGGGCGT 60.227 57.895 0.00 0.00 0.00 5.68
345 346 4.760047 GTGGCCGGACTGATGCGT 62.760 66.667 9.82 0.00 38.12 5.24
387 388 1.657751 CCATCCTGAGACGAGTCGCA 61.658 60.000 13.59 9.17 37.07 5.10
391 392 1.698506 GGATCCATCCTGAGACGAGT 58.301 55.000 6.95 0.00 43.73 4.18
398 399 0.961753 CGATGACGGATCCATCCTGA 59.038 55.000 13.41 0.00 44.93 3.86
451 453 0.658897 CTACTCTTCCTCGTCGGAGC 59.341 60.000 0.00 0.00 44.28 4.70
504 506 3.056313 GCATGGAAACGAGCTGGCC 62.056 63.158 0.00 0.00 0.00 5.36
515 517 3.133003 GCAAGGTAGAGTAGAGCATGGAA 59.867 47.826 0.00 0.00 0.00 3.53
523 526 1.381928 CGCCGGCAAGGTAGAGTAGA 61.382 60.000 28.98 0.00 43.70 2.59
625 628 5.801380 TGAAACCTAATCTAAACGGAGCTT 58.199 37.500 0.00 0.00 0.00 3.74
633 636 8.121305 ACATGCAACATGAAACCTAATCTAAA 57.879 30.769 14.17 0.00 0.00 1.85
726 757 3.050703 GACGTGATTGGATGCGTCT 57.949 52.632 5.77 0.00 46.74 4.18
737 768 3.524648 AAACACCCGCGGACGTGAT 62.525 57.895 32.48 22.29 37.70 3.06
738 769 4.224274 AAACACCCGCGGACGTGA 62.224 61.111 32.48 0.00 37.70 4.35
796 827 8.411683 CAATGGAGATATTTCTTTTTGGAGAGG 58.588 37.037 0.00 0.00 30.30 3.69
797 828 9.182214 TCAATGGAGATATTTCTTTTTGGAGAG 57.818 33.333 0.00 0.00 30.30 3.20
798 829 9.532494 TTCAATGGAGATATTTCTTTTTGGAGA 57.468 29.630 0.00 0.00 30.30 3.71
799 830 9.578439 GTTCAATGGAGATATTTCTTTTTGGAG 57.422 33.333 0.00 0.00 30.30 3.86
800 831 9.087871 TGTTCAATGGAGATATTTCTTTTTGGA 57.912 29.630 0.00 0.00 30.30 3.53
801 832 9.709495 TTGTTCAATGGAGATATTTCTTTTTGG 57.291 29.630 0.00 0.00 30.30 3.28
820 851 8.473016 CGCGTGAGTTTATTTTTAATTGTTCAA 58.527 29.630 0.00 0.00 0.00 2.69
821 852 7.644551 ACGCGTGAGTTTATTTTTAATTGTTCA 59.355 29.630 12.93 0.00 0.00 3.18
822 853 7.988547 ACGCGTGAGTTTATTTTTAATTGTTC 58.011 30.769 12.93 0.00 0.00 3.18
823 854 7.644551 TGACGCGTGAGTTTATTTTTAATTGTT 59.355 29.630 20.70 0.00 0.00 2.83
824 855 7.133513 TGACGCGTGAGTTTATTTTTAATTGT 58.866 30.769 20.70 0.00 0.00 2.71
825 856 7.541743 TGACGCGTGAGTTTATTTTTAATTG 57.458 32.000 20.70 0.00 0.00 2.32
826 857 7.113825 GGTTGACGCGTGAGTTTATTTTTAATT 59.886 33.333 20.70 0.00 0.00 1.40
827 858 6.579666 GGTTGACGCGTGAGTTTATTTTTAAT 59.420 34.615 20.70 0.00 0.00 1.40
828 859 5.908499 GGTTGACGCGTGAGTTTATTTTTAA 59.092 36.000 20.70 0.00 0.00 1.52
829 860 5.442402 GGTTGACGCGTGAGTTTATTTTTA 58.558 37.500 20.70 0.00 0.00 1.52
830 861 4.284485 GGTTGACGCGTGAGTTTATTTTT 58.716 39.130 20.70 0.00 0.00 1.94
831 862 3.605231 CGGTTGACGCGTGAGTTTATTTT 60.605 43.478 20.70 0.00 34.82 1.82
832 863 2.096614 CGGTTGACGCGTGAGTTTATTT 60.097 45.455 20.70 0.00 34.82 1.40
833 864 1.458064 CGGTTGACGCGTGAGTTTATT 59.542 47.619 20.70 0.00 34.82 1.40
834 865 1.065358 CGGTTGACGCGTGAGTTTAT 58.935 50.000 20.70 0.00 34.82 1.40
835 866 2.508743 CGGTTGACGCGTGAGTTTA 58.491 52.632 20.70 0.00 34.82 2.01
836 867 3.315796 CGGTTGACGCGTGAGTTT 58.684 55.556 20.70 0.00 34.82 2.66
853 884 1.839424 AAGTACAGGGAGCCAAATGC 58.161 50.000 0.00 0.00 41.71 3.56
854 885 2.420022 CGAAAGTACAGGGAGCCAAATG 59.580 50.000 0.00 0.00 0.00 2.32
855 886 2.711542 CGAAAGTACAGGGAGCCAAAT 58.288 47.619 0.00 0.00 0.00 2.32
856 887 1.880646 GCGAAAGTACAGGGAGCCAAA 60.881 52.381 0.00 0.00 0.00 3.28
857 888 0.321298 GCGAAAGTACAGGGAGCCAA 60.321 55.000 0.00 0.00 0.00 4.52
858 889 1.295423 GCGAAAGTACAGGGAGCCA 59.705 57.895 0.00 0.00 0.00 4.75
859 890 0.107654 ATGCGAAAGTACAGGGAGCC 60.108 55.000 0.00 0.00 0.00 4.70
860 891 1.398390 CAATGCGAAAGTACAGGGAGC 59.602 52.381 0.00 0.00 0.00 4.70
861 892 2.699954 ACAATGCGAAAGTACAGGGAG 58.300 47.619 0.00 0.00 0.00 4.30
862 893 2.851263 ACAATGCGAAAGTACAGGGA 57.149 45.000 0.00 0.00 0.00 4.20
863 894 6.260050 ACAATATACAATGCGAAAGTACAGGG 59.740 38.462 0.00 0.00 0.00 4.45
864 895 7.246674 ACAATATACAATGCGAAAGTACAGG 57.753 36.000 0.00 0.00 0.00 4.00
865 896 9.210426 GAAACAATATACAATGCGAAAGTACAG 57.790 33.333 0.00 0.00 0.00 2.74
866 897 8.941977 AGAAACAATATACAATGCGAAAGTACA 58.058 29.630 0.00 0.00 0.00 2.90
867 898 9.422196 GAGAAACAATATACAATGCGAAAGTAC 57.578 33.333 0.00 0.00 0.00 2.73
868 899 8.609176 GGAGAAACAATATACAATGCGAAAGTA 58.391 33.333 0.00 0.00 0.00 2.24
869 900 7.336931 AGGAGAAACAATATACAATGCGAAAGT 59.663 33.333 0.00 0.00 0.00 2.66
870 901 7.697691 AGGAGAAACAATATACAATGCGAAAG 58.302 34.615 0.00 0.00 0.00 2.62
871 902 7.552687 AGAGGAGAAACAATATACAATGCGAAA 59.447 33.333 0.00 0.00 0.00 3.46
872 903 7.011389 CAGAGGAGAAACAATATACAATGCGAA 59.989 37.037 0.00 0.00 0.00 4.70
873 904 6.479990 CAGAGGAGAAACAATATACAATGCGA 59.520 38.462 0.00 0.00 0.00 5.10
874 905 6.653183 CAGAGGAGAAACAATATACAATGCG 58.347 40.000 0.00 0.00 0.00 4.73
875 906 6.261826 AGCAGAGGAGAAACAATATACAATGC 59.738 38.462 0.00 0.00 0.00 3.56
876 907 7.307042 CGAGCAGAGGAGAAACAATATACAATG 60.307 40.741 0.00 0.00 0.00 2.82
877 908 6.703607 CGAGCAGAGGAGAAACAATATACAAT 59.296 38.462 0.00 0.00 0.00 2.71
878 909 6.042777 CGAGCAGAGGAGAAACAATATACAA 58.957 40.000 0.00 0.00 0.00 2.41
879 910 5.592054 CGAGCAGAGGAGAAACAATATACA 58.408 41.667 0.00 0.00 0.00 2.29
880 911 4.446051 GCGAGCAGAGGAGAAACAATATAC 59.554 45.833 0.00 0.00 0.00 1.47
881 912 4.501571 GGCGAGCAGAGGAGAAACAATATA 60.502 45.833 0.00 0.00 0.00 0.86
882 913 3.462021 GCGAGCAGAGGAGAAACAATAT 58.538 45.455 0.00 0.00 0.00 1.28
883 914 2.418746 GGCGAGCAGAGGAGAAACAATA 60.419 50.000 0.00 0.00 0.00 1.90
884 915 1.677217 GGCGAGCAGAGGAGAAACAAT 60.677 52.381 0.00 0.00 0.00 2.71
885 916 0.320771 GGCGAGCAGAGGAGAAACAA 60.321 55.000 0.00 0.00 0.00 2.83
886 917 1.293498 GGCGAGCAGAGGAGAAACA 59.707 57.895 0.00 0.00 0.00 2.83
887 918 1.807573 CGGCGAGCAGAGGAGAAAC 60.808 63.158 0.00 0.00 0.00 2.78
888 919 2.573869 CGGCGAGCAGAGGAGAAA 59.426 61.111 0.00 0.00 0.00 2.52
889 920 3.452786 CCGGCGAGCAGAGGAGAA 61.453 66.667 9.30 0.00 0.00 2.87
894 925 4.567385 GAGAGCCGGCGAGCAGAG 62.567 72.222 23.20 0.00 34.23 3.35
896 927 4.441695 TTGAGAGCCGGCGAGCAG 62.442 66.667 23.20 0.00 34.23 4.24
897 928 4.742201 GTTGAGAGCCGGCGAGCA 62.742 66.667 23.20 17.28 34.23 4.26
898 929 4.443266 AGTTGAGAGCCGGCGAGC 62.443 66.667 23.20 14.98 0.00 5.03
899 930 2.202676 GAGTTGAGAGCCGGCGAG 60.203 66.667 23.20 0.00 0.00 5.03
900 931 2.676822 AGAGTTGAGAGCCGGCGA 60.677 61.111 23.20 3.21 0.00 5.54
901 932 2.202676 GAGAGTTGAGAGCCGGCG 60.203 66.667 23.20 0.00 0.00 6.46
902 933 1.016653 GTTGAGAGTTGAGAGCCGGC 61.017 60.000 21.89 21.89 0.00 6.13
903 934 0.318441 TGTTGAGAGTTGAGAGCCGG 59.682 55.000 0.00 0.00 0.00 6.13
904 935 2.266554 GATGTTGAGAGTTGAGAGCCG 58.733 52.381 0.00 0.00 0.00 5.52
905 936 2.626840 GGATGTTGAGAGTTGAGAGCC 58.373 52.381 0.00 0.00 0.00 4.70
906 937 2.235898 AGGGATGTTGAGAGTTGAGAGC 59.764 50.000 0.00 0.00 0.00 4.09
907 938 3.369261 CCAGGGATGTTGAGAGTTGAGAG 60.369 52.174 0.00 0.00 0.00 3.20
908 939 2.568956 CCAGGGATGTTGAGAGTTGAGA 59.431 50.000 0.00 0.00 0.00 3.27
909 940 2.938756 GCCAGGGATGTTGAGAGTTGAG 60.939 54.545 0.00 0.00 0.00 3.02
910 941 1.003580 GCCAGGGATGTTGAGAGTTGA 59.996 52.381 0.00 0.00 0.00 3.18
911 942 1.004044 AGCCAGGGATGTTGAGAGTTG 59.996 52.381 0.00 0.00 0.00 3.16
912 943 1.280421 GAGCCAGGGATGTTGAGAGTT 59.720 52.381 0.00 0.00 0.00 3.01
913 944 0.908198 GAGCCAGGGATGTTGAGAGT 59.092 55.000 0.00 0.00 0.00 3.24
914 945 0.179936 GGAGCCAGGGATGTTGAGAG 59.820 60.000 0.00 0.00 0.00 3.20
915 946 1.274703 GGGAGCCAGGGATGTTGAGA 61.275 60.000 0.00 0.00 0.00 3.27
916 947 1.225704 GGGAGCCAGGGATGTTGAG 59.774 63.158 0.00 0.00 0.00 3.02
917 948 1.229951 AGGGAGCCAGGGATGTTGA 60.230 57.895 0.00 0.00 0.00 3.18
918 949 1.077212 CAGGGAGCCAGGGATGTTG 60.077 63.158 0.00 0.00 0.00 3.33
919 950 0.253160 TACAGGGAGCCAGGGATGTT 60.253 55.000 0.00 0.00 0.00 2.71
920 951 0.983378 GTACAGGGAGCCAGGGATGT 60.983 60.000 0.00 0.00 0.00 3.06
921 952 0.692419 AGTACAGGGAGCCAGGGATG 60.692 60.000 0.00 0.00 0.00 3.51
922 953 0.044855 AAGTACAGGGAGCCAGGGAT 59.955 55.000 0.00 0.00 0.00 3.85
923 954 0.178873 AAAGTACAGGGAGCCAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
924 955 0.253327 GAAAGTACAGGGAGCCAGGG 59.747 60.000 0.00 0.00 0.00 4.45
925 956 0.108138 CGAAAGTACAGGGAGCCAGG 60.108 60.000 0.00 0.00 0.00 4.45
926 957 0.741221 GCGAAAGTACAGGGAGCCAG 60.741 60.000 0.00 0.00 0.00 4.85
927 958 1.295423 GCGAAAGTACAGGGAGCCA 59.705 57.895 0.00 0.00 0.00 4.75
928 959 0.107654 ATGCGAAAGTACAGGGAGCC 60.108 55.000 0.00 0.00 0.00 4.70
929 960 1.398390 CAATGCGAAAGTACAGGGAGC 59.602 52.381 0.00 0.00 0.00 4.70
930 961 2.699954 ACAATGCGAAAGTACAGGGAG 58.300 47.619 0.00 0.00 0.00 4.30
931 962 2.851263 ACAATGCGAAAGTACAGGGA 57.149 45.000 0.00 0.00 0.00 4.20
932 963 6.260050 ACAATATACAATGCGAAAGTACAGGG 59.740 38.462 0.00 0.00 0.00 4.45
933 964 7.246674 ACAATATACAATGCGAAAGTACAGG 57.753 36.000 0.00 0.00 0.00 4.00
934 965 9.210426 GAAACAATATACAATGCGAAAGTACAG 57.790 33.333 0.00 0.00 0.00 2.74
935 966 8.178964 GGAAACAATATACAATGCGAAAGTACA 58.821 33.333 0.00 0.00 0.00 2.90
936 967 8.395633 AGGAAACAATATACAATGCGAAAGTAC 58.604 33.333 0.00 0.00 0.00 2.73
937 968 8.500753 AGGAAACAATATACAATGCGAAAGTA 57.499 30.769 0.00 0.00 0.00 2.24
938 969 7.391148 AGGAAACAATATACAATGCGAAAGT 57.609 32.000 0.00 0.00 0.00 2.66
939 970 6.912591 GGAGGAAACAATATACAATGCGAAAG 59.087 38.462 0.00 0.00 0.00 2.62
940 971 6.375736 TGGAGGAAACAATATACAATGCGAAA 59.624 34.615 0.00 0.00 0.00 3.46
941 972 5.883115 TGGAGGAAACAATATACAATGCGAA 59.117 36.000 0.00 0.00 0.00 4.70
942 973 5.432645 TGGAGGAAACAATATACAATGCGA 58.567 37.500 0.00 0.00 0.00 5.10
943 974 5.749596 TGGAGGAAACAATATACAATGCG 57.250 39.130 0.00 0.00 0.00 4.73
944 975 7.649306 GTCAATGGAGGAAACAATATACAATGC 59.351 37.037 0.00 0.00 0.00 3.56
945 976 8.137437 GGTCAATGGAGGAAACAATATACAATG 58.863 37.037 0.00 0.00 0.00 2.82
946 977 7.838696 TGGTCAATGGAGGAAACAATATACAAT 59.161 33.333 0.00 0.00 0.00 2.71
947 978 7.178573 TGGTCAATGGAGGAAACAATATACAA 58.821 34.615 0.00 0.00 0.00 2.41
948 979 6.726379 TGGTCAATGGAGGAAACAATATACA 58.274 36.000 0.00 0.00 0.00 2.29
949 980 7.307989 CGATGGTCAATGGAGGAAACAATATAC 60.308 40.741 0.00 0.00 0.00 1.47
950 981 6.710295 CGATGGTCAATGGAGGAAACAATATA 59.290 38.462 0.00 0.00 0.00 0.86
951 982 5.532406 CGATGGTCAATGGAGGAAACAATAT 59.468 40.000 0.00 0.00 0.00 1.28
952 983 4.881273 CGATGGTCAATGGAGGAAACAATA 59.119 41.667 0.00 0.00 0.00 1.90
953 984 3.696051 CGATGGTCAATGGAGGAAACAAT 59.304 43.478 0.00 0.00 0.00 2.71
954 985 3.081061 CGATGGTCAATGGAGGAAACAA 58.919 45.455 0.00 0.00 0.00 2.83
955 986 2.710377 CGATGGTCAATGGAGGAAACA 58.290 47.619 0.00 0.00 0.00 2.83
956 987 1.401905 GCGATGGTCAATGGAGGAAAC 59.598 52.381 0.00 0.00 0.00 2.78
957 988 1.281867 AGCGATGGTCAATGGAGGAAA 59.718 47.619 0.00 0.00 0.00 3.13
988 1024 1.750930 CCTCCATCAGATCCGGTGG 59.249 63.158 1.32 1.32 0.00 4.61
989 1025 1.070445 GCCTCCATCAGATCCGGTG 59.930 63.158 0.00 0.00 0.00 4.94
990 1026 2.143419 GGCCTCCATCAGATCCGGT 61.143 63.158 0.00 0.00 0.00 5.28
1029 1065 0.610232 GGAGTGTTGCAAGGATGGCT 60.610 55.000 0.00 0.00 34.64 4.75
1030 1066 0.610232 AGGAGTGTTGCAAGGATGGC 60.610 55.000 0.00 0.00 33.57 4.40
1044 1080 5.335269 CGCATCGAGTTTATCTATCAGGAGT 60.335 44.000 0.00 0.00 0.00 3.85
1053 1089 3.735237 ATCCACGCATCGAGTTTATCT 57.265 42.857 0.00 0.00 0.00 1.98
1059 1095 0.525668 GTCGAATCCACGCATCGAGT 60.526 55.000 0.00 0.00 45.19 4.18
1098 1134 1.946768 CCCGACTTGAGCTTTTCAACA 59.053 47.619 0.00 0.00 40.82 3.33
1118 1154 1.547223 CCATCTTGATGCCCCTGATCC 60.547 57.143 5.16 0.00 0.00 3.36
1126 1162 1.211457 AGAGACCACCATCTTGATGCC 59.789 52.381 5.16 0.00 0.00 4.40
1128 1164 2.093075 AGCAGAGACCACCATCTTGATG 60.093 50.000 3.77 3.77 0.00 3.07
1129 1165 2.093075 CAGCAGAGACCACCATCTTGAT 60.093 50.000 0.00 0.00 0.00 2.57
1161 1197 1.437986 CGACTCGTTCCTGATCCCC 59.562 63.158 0.00 0.00 0.00 4.81
1209 1245 1.728069 GTCGGCATCGTAGAGCAGA 59.272 57.895 0.00 0.00 43.63 4.26
1211 1247 1.444917 ATCGTCGGCATCGTAGAGCA 61.445 55.000 0.00 0.00 43.63 4.26
1275 1311 1.866483 TAGGCGTACCTCCACCTCCA 61.866 60.000 2.14 0.00 46.34 3.86
1278 1314 0.683504 CAGTAGGCGTACCTCCACCT 60.684 60.000 12.77 0.00 46.34 4.00
1280 1316 1.141234 GCAGTAGGCGTACCTCCAC 59.859 63.158 12.77 0.00 46.34 4.02
1281 1317 2.056223 GGCAGTAGGCGTACCTCCA 61.056 63.158 12.77 0.00 46.34 3.86
1282 1318 2.794028 GGGCAGTAGGCGTACCTCC 61.794 68.421 12.77 13.11 46.34 4.30
1356 1531 4.670347 GTCGTCCTTGACCAGTTAGTATC 58.330 47.826 0.00 0.00 32.61 2.24
1367 1542 1.523758 AAAGCATGGTCGTCCTTGAC 58.476 50.000 16.75 9.04 40.11 3.18
1403 1582 0.840617 TCCCTTGTAACTGTGCCACA 59.159 50.000 0.00 0.00 0.00 4.17
1404 1583 1.235724 GTCCCTTGTAACTGTGCCAC 58.764 55.000 0.00 0.00 0.00 5.01
1432 1639 4.449131 CATCCCCCATTGATATCTCATCG 58.551 47.826 3.98 0.00 0.00 3.84
1440 1647 2.134354 TGTCAGCATCCCCCATTGATA 58.866 47.619 0.00 0.00 0.00 2.15
1444 1651 0.323725 GTGTGTCAGCATCCCCCATT 60.324 55.000 0.00 0.00 0.00 3.16
1446 1653 1.847506 AGTGTGTCAGCATCCCCCA 60.848 57.895 0.00 0.00 0.00 4.96
1450 1657 2.611292 GCTATTCAGTGTGTCAGCATCC 59.389 50.000 0.00 0.00 0.00 3.51
1464 1671 0.399833 TGTGCCACCACTGCTATTCA 59.600 50.000 0.00 0.00 42.54 2.57
1465 1672 1.755179 ATGTGCCACCACTGCTATTC 58.245 50.000 0.00 0.00 42.54 1.75
1466 1673 2.220653 AATGTGCCACCACTGCTATT 57.779 45.000 0.00 0.00 42.54 1.73
1467 1674 2.643551 GTAATGTGCCACCACTGCTAT 58.356 47.619 0.00 0.00 42.54 2.97
1470 1677 1.501741 CGTAATGTGCCACCACTGC 59.498 57.895 0.00 0.00 42.54 4.40
1476 1683 1.079681 TCGGACCGTAATGTGCCAC 60.080 57.895 14.79 0.00 0.00 5.01
1482 1689 1.958579 TCCATACCTCGGACCGTAATG 59.041 52.381 14.79 12.46 0.00 1.90
1494 1701 5.873164 GTGATCGTAAAGTGTTTCCATACCT 59.127 40.000 0.00 0.00 0.00 3.08
1502 1709 6.540914 TCCTTTTCTGTGATCGTAAAGTGTTT 59.459 34.615 0.00 0.00 0.00 2.83
1513 1720 6.675728 GCTTTCCGTTATCCTTTTCTGTGATC 60.676 42.308 0.00 0.00 0.00 2.92
1539 1746 8.503196 CACAGTGTCTACATATTGCTTTGTTAA 58.497 33.333 0.00 0.00 0.00 2.01
1540 1747 7.875554 TCACAGTGTCTACATATTGCTTTGTTA 59.124 33.333 0.00 0.00 0.00 2.41
1541 1748 6.710295 TCACAGTGTCTACATATTGCTTTGTT 59.290 34.615 0.00 0.00 0.00 2.83
1542 1749 6.147821 GTCACAGTGTCTACATATTGCTTTGT 59.852 38.462 0.00 0.00 0.00 2.83
1569 1781 6.089150 GGTCTTCGTATCACAGTTAAACTCAC 59.911 42.308 0.00 0.00 0.00 3.51
1576 1788 4.478699 CGTTGGTCTTCGTATCACAGTTA 58.521 43.478 0.00 0.00 0.00 2.24
1579 1791 2.259618 CCGTTGGTCTTCGTATCACAG 58.740 52.381 0.00 0.00 0.00 3.66
1604 1816 8.868522 TTCTCCAAATGTTTTCTCATAGATGT 57.131 30.769 0.00 0.00 0.00 3.06
1679 1894 9.635404 TTCAATTTTCTTTAGGTACCTTGAAGA 57.365 29.630 25.23 25.23 0.00 2.87
1708 1923 7.814587 CACTCAAGGAGATGCATATAAACGATA 59.185 37.037 0.00 0.00 33.32 2.92
1726 1990 0.321653 GGTGGGTAGTGCACTCAAGG 60.322 60.000 25.56 0.00 40.11 3.61
1733 1997 3.237268 AGAAAAATGGTGGGTAGTGCA 57.763 42.857 0.00 0.00 0.00 4.57
1747 2033 6.035843 CAGTGCTGCAGTAAGAAAAGAAAAA 58.964 36.000 16.64 0.00 0.00 1.94
1750 2036 4.450976 TCAGTGCTGCAGTAAGAAAAGAA 58.549 39.130 16.64 0.00 0.00 2.52
1751 2037 4.071961 TCAGTGCTGCAGTAAGAAAAGA 57.928 40.909 16.64 0.00 0.00 2.52
1790 2076 5.540911 TGTTTCTTTTCCTGGATGATTTGC 58.459 37.500 0.00 0.00 0.00 3.68
1793 2079 6.183360 ACGTTTGTTTCTTTTCCTGGATGATT 60.183 34.615 0.00 0.00 0.00 2.57
1794 2080 5.301805 ACGTTTGTTTCTTTTCCTGGATGAT 59.698 36.000 0.00 0.00 0.00 2.45
1805 2091 4.522722 TTGGACCAACGTTTGTTTCTTT 57.477 36.364 6.46 0.00 35.72 2.52
1812 2101 2.060284 CATGCATTGGACCAACGTTTG 58.940 47.619 9.67 5.06 0.00 2.93
1827 2116 7.658525 AATAACATCAAAAGTATCCCATGCA 57.341 32.000 0.00 0.00 0.00 3.96
1848 2137 9.106070 GGCTTTCCGTTTTCTTCTTCTATAATA 57.894 33.333 0.00 0.00 0.00 0.98
1849 2138 7.610305 TGGCTTTCCGTTTTCTTCTTCTATAAT 59.390 33.333 0.00 0.00 34.14 1.28
1850 2139 6.938030 TGGCTTTCCGTTTTCTTCTTCTATAA 59.062 34.615 0.00 0.00 34.14 0.98
1870 2159 5.726980 TTTACATCTTGCTTGATTGGCTT 57.273 34.783 0.00 0.00 0.00 4.35
1900 2190 0.247460 CCGGCACTTGATCTCTGTGA 59.753 55.000 14.30 0.00 33.95 3.58
1917 2207 4.939368 TGTCCCGGTGTTTGCCCG 62.939 66.667 0.00 0.00 45.07 6.13
1919 2209 1.586154 CTGATGTCCCGGTGTTTGCC 61.586 60.000 0.00 0.00 0.00 4.52
1920 2210 1.586154 CCTGATGTCCCGGTGTTTGC 61.586 60.000 0.00 0.00 0.00 3.68
1922 2212 1.354101 TACCTGATGTCCCGGTGTTT 58.646 50.000 0.00 0.00 32.36 2.83
1925 2215 0.532862 GCATACCTGATGTCCCGGTG 60.533 60.000 0.00 0.00 37.90 4.94
1935 2225 3.719268 ACAATGGTTGAGCATACCTGA 57.281 42.857 0.00 0.00 36.60 3.86
1954 2244 8.504815 GTCCAGGTTTCTTCTTACAAATCTTAC 58.495 37.037 0.00 0.00 0.00 2.34
1955 2245 7.664318 GGTCCAGGTTTCTTCTTACAAATCTTA 59.336 37.037 0.00 0.00 0.00 2.10
1964 2254 5.768164 GTCATTTGGTCCAGGTTTCTTCTTA 59.232 40.000 0.00 0.00 0.00 2.10
2016 2316 3.581024 AAAATGTGTCGATGCATGCTT 57.419 38.095 20.33 13.23 0.00 3.91
2018 2318 4.661125 TCTAAAAATGTGTCGATGCATGC 58.339 39.130 11.82 11.82 0.00 4.06
2020 2320 7.537715 TGATTTCTAAAAATGTGTCGATGCAT 58.462 30.769 0.00 0.00 35.21 3.96
2027 2327 7.217070 GCGAGACATGATTTCTAAAAATGTGTC 59.783 37.037 0.00 14.95 41.63 3.67
2038 2338 3.055530 AGAACCAGCGAGACATGATTTCT 60.056 43.478 0.00 0.00 0.00 2.52
2042 2342 4.679373 ATTAGAACCAGCGAGACATGAT 57.321 40.909 0.00 0.00 0.00 2.45
2044 2344 3.738282 GCTATTAGAACCAGCGAGACATG 59.262 47.826 0.00 0.00 0.00 3.21
2045 2345 3.243907 GGCTATTAGAACCAGCGAGACAT 60.244 47.826 0.00 0.00 36.12 3.06
2047 2347 2.100916 TGGCTATTAGAACCAGCGAGAC 59.899 50.000 0.00 0.00 36.12 3.36
2049 2349 2.890808 TGGCTATTAGAACCAGCGAG 57.109 50.000 0.00 0.00 36.12 5.03
2051 2351 3.003689 CCAATTGGCTATTAGAACCAGCG 59.996 47.826 12.53 0.00 36.12 5.18
2052 2352 4.574599 CCAATTGGCTATTAGAACCAGC 57.425 45.455 12.53 0.00 34.28 4.85
2073 2386 4.050553 TGCTGCAGTAAGAAAAACATTGC 58.949 39.130 16.64 0.00 0.00 3.56
2074 2387 4.146961 CGTGCTGCAGTAAGAAAAACATTG 59.853 41.667 16.64 0.00 0.00 2.82
2075 2388 4.290155 CGTGCTGCAGTAAGAAAAACATT 58.710 39.130 16.64 0.00 0.00 2.71
2108 2425 3.417101 ACAATAGGTGTCGGAATTGCAA 58.583 40.909 0.00 0.00 34.38 4.08
2114 2431 4.938832 CACCAATTACAATAGGTGTCGGAA 59.061 41.667 0.00 0.00 44.95 4.30
2116 2433 4.875544 CACCAATTACAATAGGTGTCGG 57.124 45.455 0.00 0.00 44.95 4.79
2155 2475 1.946768 CTCCTCAGCTACTCTCCTTCG 59.053 57.143 0.00 0.00 0.00 3.79
2166 2486 1.131638 TTTGTGGTGACTCCTCAGCT 58.868 50.000 1.95 0.00 44.07 4.24
2168 2488 3.070018 GTGATTTGTGGTGACTCCTCAG 58.930 50.000 0.00 0.00 40.21 3.35
2179 2499 4.395854 TGTATTAGCTGCAGTGATTTGTGG 59.604 41.667 16.64 0.00 0.00 4.17
2256 2579 2.359900 CCCTGGATGTCTTGTAACTGC 58.640 52.381 0.00 0.00 0.00 4.40
2274 2597 2.523453 GAACCTCGCTCACTTCCCCC 62.523 65.000 0.00 0.00 0.00 5.40
2306 2629 3.766591 GTGATCTGAACTGGAGGAGAAGA 59.233 47.826 0.00 0.00 0.00 2.87
2310 2639 3.594134 GTTGTGATCTGAACTGGAGGAG 58.406 50.000 0.00 0.00 0.00 3.69
2313 2642 2.341257 CGGTTGTGATCTGAACTGGAG 58.659 52.381 7.87 0.00 0.00 3.86
2346 2675 3.106827 TGATGTCCTTAGGTGCTGATCA 58.893 45.455 0.00 0.00 0.00 2.92
2378 2707 3.083293 ACTCTTCCGTACACTTCTCCTC 58.917 50.000 0.00 0.00 0.00 3.71
2391 2720 2.732412 TCTCTTCTGCAACTCTTCCG 57.268 50.000 0.00 0.00 0.00 4.30
2502 2831 5.853936 TCACTGTATACAAGTTGAGCAAGT 58.146 37.500 10.54 3.78 0.00 3.16
2557 2886 2.004733 GTGCGACACCCAAACCTATAC 58.995 52.381 0.00 0.00 0.00 1.47
2561 2890 0.681564 TTTGTGCGACACCCAAACCT 60.682 50.000 7.38 0.00 32.73 3.50
2574 2903 3.968724 GTCTCACTTCGTCAAATTTGTGC 59.031 43.478 17.47 10.85 0.00 4.57
2580 2909 5.696724 CCTTGTTAGTCTCACTTCGTCAAAT 59.303 40.000 0.00 0.00 0.00 2.32
2606 2935 5.815740 TCGCCAGAAATAGAGTTTAACATCC 59.184 40.000 0.00 0.00 0.00 3.51
2620 2949 1.838112 TCATGCCTTTCGCCAGAAAT 58.162 45.000 0.00 0.00 44.44 2.17
2626 2955 2.947448 ATTTCTTCATGCCTTTCGCC 57.053 45.000 0.00 0.00 36.24 5.54
2628 2957 6.381801 ACAGTTTATTTCTTCATGCCTTTCG 58.618 36.000 0.00 0.00 0.00 3.46
2662 2991 6.404708 CATGACTCTTCAAGATCTCCTGAAA 58.595 40.000 10.34 0.00 34.61 2.69
2919 3254 3.775202 CTCCTCACAGTTCTCATAACCG 58.225 50.000 0.00 0.00 0.00 4.44
2964 3305 3.334583 AACTTCTCAGCTATTTGCCGA 57.665 42.857 0.00 0.00 44.23 5.54
2976 3317 2.175931 TGGGTTGCCCTTTAACTTCTCA 59.824 45.455 5.73 0.00 45.70 3.27
3009 3350 7.291566 TCTTCCTTAATAGGTCTCCTGTAGAG 58.708 42.308 0.00 0.00 42.60 2.43
3021 3362 7.820872 TCGGTGTTAAGTTTCTTCCTTAATAGG 59.179 37.037 0.00 0.00 43.46 2.57
3099 3440 2.106166 CAGAGCAGCCATAATTCCTCCT 59.894 50.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.