Multiple sequence alignment - TraesCS2A01G465600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G465600 chr2A 100.000 5993 0 0 2513 8505 710354443 710360435 0.000000e+00 11068.0
1 TraesCS2A01G465600 chr2A 100.000 2191 0 0 1 2191 710351931 710354121 0.000000e+00 4047.0
2 TraesCS2A01G465600 chr2A 78.125 192 35 6 8175 8362 748289986 748290174 1.940000e-21 115.0
3 TraesCS2A01G465600 chr2D 98.013 5033 92 8 2875 7904 571877182 571882209 0.000000e+00 8733.0
4 TraesCS2A01G465600 chr2D 91.393 2161 128 27 1 2139 571874245 571876369 0.000000e+00 2907.0
5 TraesCS2A01G465600 chr2D 93.235 340 21 1 2517 2854 571876854 571877193 4.580000e-137 499.0
6 TraesCS2A01G465600 chr2D 91.053 190 12 4 7941 8128 571882208 571882394 1.420000e-62 252.0
7 TraesCS2A01G465600 chr2B 97.165 3281 76 10 2874 6150 683751724 683754991 0.000000e+00 5528.0
8 TraesCS2A01G465600 chr2B 95.610 1936 75 9 6183 8115 683754992 683756920 0.000000e+00 3096.0
9 TraesCS2A01G465600 chr2B 89.991 1169 57 19 810 1936 683749259 683750409 0.000000e+00 1456.0
10 TraesCS2A01G465600 chr2B 89.651 773 69 6 1 772 683748496 683749258 0.000000e+00 974.0
11 TraesCS2A01G465600 chr2B 91.789 341 25 1 2517 2854 683751396 683751736 9.990000e-129 472.0
12 TraesCS2A01G465600 chr2B 85.659 258 28 7 52 304 43164189 43164442 6.550000e-66 263.0
13 TraesCS2A01G465600 chr2B 72.405 761 147 37 4765 5510 97375521 97374809 5.240000e-42 183.0
14 TraesCS2A01G465600 chr5D 75.928 889 184 22 3782 4658 554142973 554143843 6.100000e-116 429.0
15 TraesCS2A01G465600 chr5D 74.595 988 215 24 3686 4658 554345655 554346621 1.330000e-107 401.0
16 TraesCS2A01G465600 chr5D 74.367 987 219 21 3686 4658 553967491 553966525 2.880000e-104 390.0
17 TraesCS2A01G465600 chr5D 83.333 228 33 5 53 279 433507703 433507926 1.120000e-48 206.0
18 TraesCS2A01G465600 chr5D 83.333 222 30 5 8130 8346 440362144 440361925 1.870000e-46 198.0
19 TraesCS2A01G465600 chr5D 83.036 224 32 5 8127 8346 509652821 509653042 1.870000e-46 198.0
20 TraesCS2A01G465600 chr5D 80.617 227 33 9 8127 8346 397013548 397013770 1.900000e-36 165.0
21 TraesCS2A01G465600 chr6D 75.673 892 186 23 3781 4658 467801395 467800521 4.750000e-112 416.0
22 TraesCS2A01G465600 chr6D 100.000 30 0 0 8476 8505 469275600 469275629 1.000000e-03 56.5
23 TraesCS2A01G465600 chr7A 73.742 994 233 21 3678 4657 726737474 726738453 1.740000e-96 364.0
24 TraesCS2A01G465600 chr7A 80.397 403 74 4 4745 5143 6236389 6236790 1.390000e-77 302.0
25 TraesCS2A01G465600 chr7A 79.901 403 76 4 4745 5143 5527913 5528314 3.000000e-74 291.0
26 TraesCS2A01G465600 chr7A 77.805 401 78 9 4750 5143 726710855 726710459 3.970000e-58 237.0
27 TraesCS2A01G465600 chrUn 74.074 891 208 19 3774 4654 294521822 294522699 2.270000e-90 344.0
28 TraesCS2A01G465600 chrUn 73.772 896 210 20 3774 4658 248487392 248488273 6.360000e-86 329.0
29 TraesCS2A01G465600 chrUn 72.829 898 215 23 3774 4658 88657835 88656954 6.500000e-71 279.0
30 TraesCS2A01G465600 chrUn 78.164 403 77 9 4748 5143 248488303 248488701 6.590000e-61 246.0
31 TraesCS2A01G465600 chrUn 76.923 403 82 10 4748 5143 88656924 88656526 1.440000e-52 219.0
32 TraesCS2A01G465600 chr7D 73.962 891 213 15 3774 4656 631060306 631059427 8.180000e-90 342.0
33 TraesCS2A01G465600 chr7D 74.278 727 162 18 3774 4489 638648195 638647483 5.030000e-72 283.0
34 TraesCS2A01G465600 chr7D 79.353 402 78 4 4746 5143 5010445 5010845 2.340000e-70 278.0
35 TraesCS2A01G465600 chr7D 72.129 897 221 24 3775 4658 631231691 631232571 2.370000e-60 244.0
36 TraesCS2A01G465600 chr7D 77.387 398 83 6 4748 5140 631232601 631232996 6.640000e-56 230.0
37 TraesCS2A01G465600 chr4A 74.658 805 186 15 3774 4571 738046155 738046948 2.940000e-89 340.0
38 TraesCS2A01G465600 chr4A 84.211 95 11 3 8127 8218 739069186 739069093 1.180000e-13 89.8
39 TraesCS2A01G465600 chr5B 83.929 224 31 4 8127 8346 507805815 507806037 8.650000e-50 209.0
40 TraesCS2A01G465600 chr3B 83.260 227 28 6 8127 8344 654437297 654437522 5.210000e-47 200.0
41 TraesCS2A01G465600 chr3B 78.319 226 39 5 8130 8346 654437522 654437298 4.140000e-28 137.0
42 TraesCS2A01G465600 chr3B 81.690 142 25 1 656 797 823969121 823969261 5.390000e-22 117.0
43 TraesCS2A01G465600 chr6B 88.079 151 17 1 128 278 694411147 694410998 2.440000e-40 178.0
44 TraesCS2A01G465600 chr6B 90.000 60 6 0 380 439 693829376 693829317 2.550000e-10 78.7
45 TraesCS2A01G465600 chr3D 78.832 274 51 5 1002 1270 554955855 554956126 2.440000e-40 178.0
46 TraesCS2A01G465600 chr1D 80.088 226 36 8 8127 8346 432199436 432199214 8.840000e-35 159.0
47 TraesCS2A01G465600 chr1D 78.761 226 38 8 8127 8346 298500910 298501131 8.900000e-30 143.0
48 TraesCS2A01G465600 chr4D 78.281 221 38 9 8127 8341 37488977 37489193 5.360000e-27 134.0
49 TraesCS2A01G465600 chr4D 74.439 223 40 16 8127 8340 233154811 233155025 7.080000e-11 80.5
50 TraesCS2A01G465600 chr5A 76.744 172 34 6 8175 8343 376848057 376848225 3.270000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G465600 chr2A 710351931 710360435 8504 False 7557.50 11068 100.0000 1 8505 2 chr2A.!!$F2 8504
1 TraesCS2A01G465600 chr2D 571874245 571882394 8149 False 3097.75 8733 93.4235 1 8128 4 chr2D.!!$F1 8127
2 TraesCS2A01G465600 chr2B 683748496 683756920 8424 False 2305.20 5528 92.8412 1 8115 5 chr2B.!!$F2 8114
3 TraesCS2A01G465600 chr5D 554142973 554143843 870 False 429.00 429 75.9280 3782 4658 1 chr5D.!!$F4 876
4 TraesCS2A01G465600 chr5D 554345655 554346621 966 False 401.00 401 74.5950 3686 4658 1 chr5D.!!$F5 972
5 TraesCS2A01G465600 chr5D 553966525 553967491 966 True 390.00 390 74.3670 3686 4658 1 chr5D.!!$R2 972
6 TraesCS2A01G465600 chr6D 467800521 467801395 874 True 416.00 416 75.6730 3781 4658 1 chr6D.!!$R1 877
7 TraesCS2A01G465600 chr7A 726737474 726738453 979 False 364.00 364 73.7420 3678 4657 1 chr7A.!!$F3 979
8 TraesCS2A01G465600 chrUn 294521822 294522699 877 False 344.00 344 74.0740 3774 4654 1 chrUn.!!$F1 880
9 TraesCS2A01G465600 chrUn 248487392 248488701 1309 False 287.50 329 75.9680 3774 5143 2 chrUn.!!$F2 1369
10 TraesCS2A01G465600 chrUn 88656526 88657835 1309 True 249.00 279 74.8760 3774 5143 2 chrUn.!!$R1 1369
11 TraesCS2A01G465600 chr7D 631059427 631060306 879 True 342.00 342 73.9620 3774 4656 1 chr7D.!!$R1 882
12 TraesCS2A01G465600 chr7D 638647483 638648195 712 True 283.00 283 74.2780 3774 4489 1 chr7D.!!$R2 715
13 TraesCS2A01G465600 chr7D 631231691 631232996 1305 False 237.00 244 74.7580 3775 5140 2 chr7D.!!$F2 1365
14 TraesCS2A01G465600 chr4A 738046155 738046948 793 False 340.00 340 74.6580 3774 4571 1 chr4A.!!$F1 797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 953 0.321671 TGCTCTGTTCTTCTTCCCCG 59.678 55.00 0.00 0.0 0.00 5.73 F
961 973 0.768221 TCCCTGCACTTTCCTCCACT 60.768 55.00 0.00 0.0 0.00 4.00 F
2039 2090 0.874175 CGTGTGTGCAGGAACGAAGA 60.874 55.00 8.83 0.0 38.27 2.87 F
2937 3515 1.017177 TACATCCGCGCACCTGTTTC 61.017 55.00 8.75 0.0 0.00 2.78 F
2948 3526 4.057432 CGCACCTGTTTCCATTTTCAATT 58.943 39.13 0.00 0.0 0.00 2.32 F
3131 3711 6.021030 TCTGATAGGTAACAGGTAACCTTGT 58.979 40.00 0.00 0.0 43.77 3.16 F
4312 4901 6.721318 TCAAATAGCAGAGAAGTTAATGGGT 58.279 36.00 0.00 0.0 0.00 4.51 F
6454 7046 1.278238 CGACGGCTCTAATGGTGTTC 58.722 55.00 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2796 3374 0.108585 GTCAGTTGCTCTGGGGTTCA 59.891 55.000 8.98 0.00 43.76 3.18 R
2883 3461 7.775561 GGATCCAGAGGAAAACATATGTTAACT 59.224 37.037 21.07 17.75 33.76 2.24 R
3247 3827 1.208293 TGCCCGTATGCATTCTGTACA 59.792 47.619 3.54 0.00 36.04 2.90 R
4312 4901 1.847798 ATCCAGCTGCCAACGGGTTA 61.848 55.000 8.66 0.00 36.17 2.85 R
5299 5891 7.473735 TGTCATTTTACCAATGCAAGGAATA 57.526 32.000 14.81 0.00 0.00 1.75 R
5582 6174 3.634448 CCATTGTACCCAAATATCCGCAA 59.366 43.478 0.00 0.00 33.44 4.85 R
6688 7280 3.031736 CTCGAGGGAGGTAAATCCAGAA 58.968 50.000 3.91 0.00 41.52 3.02 R
8213 8810 0.036164 ACCGCACTGTTCATGCCTAA 59.964 50.000 0.00 0.00 40.09 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 6.442513 AGAAGAAGTGTCTTTGTTTTCAGG 57.557 37.500 0.00 0.00 44.42 3.86
170 171 4.795469 ACATGTGGCAGAATCCAATATGA 58.205 39.130 0.00 0.00 37.96 2.15
220 222 1.283613 TCGTATTTGCCACCTCCCAAT 59.716 47.619 0.00 0.00 0.00 3.16
247 249 1.303236 CGGCTCCATCCAACAACCA 60.303 57.895 0.00 0.00 0.00 3.67
264 266 8.859156 CCAACAACCAATATTCAAAGTTAATCG 58.141 33.333 0.00 0.00 0.00 3.34
344 346 4.456911 CCTTCTGTGTGCATCTTGTGTTAT 59.543 41.667 0.00 0.00 0.00 1.89
348 350 3.752747 TGTGTGCATCTTGTGTTATCTGG 59.247 43.478 0.00 0.00 0.00 3.86
349 351 4.002982 GTGTGCATCTTGTGTTATCTGGA 58.997 43.478 0.00 0.00 0.00 3.86
350 352 4.455533 GTGTGCATCTTGTGTTATCTGGAA 59.544 41.667 0.00 0.00 0.00 3.53
387 390 3.558033 GTCCTCTATCGGTCTCTCCTTT 58.442 50.000 0.00 0.00 0.00 3.11
391 394 2.099263 TCTATCGGTCTCTCCTTTTGCG 59.901 50.000 0.00 0.00 0.00 4.85
435 438 4.416738 GCGCCCTCCTTGCCTTCT 62.417 66.667 0.00 0.00 0.00 2.85
439 442 1.271127 GCCCTCCTTGCCTTCTCTCT 61.271 60.000 0.00 0.00 0.00 3.10
450 453 2.676748 CCTTCTCTCTAGGTGCTCCAT 58.323 52.381 7.70 0.00 35.89 3.41
464 467 1.342819 GCTCCATATCTCTCAAGCGGT 59.657 52.381 0.00 0.00 0.00 5.68
473 476 4.329545 TCAAGCGGTGGCACCTCC 62.330 66.667 32.28 22.72 43.41 4.30
481 484 1.492993 GGTGGCACCTCCCTTCTTCT 61.493 60.000 29.22 0.00 34.73 2.85
496 499 4.019860 CCTTCTTCTCATCTGGGTCTTTCA 60.020 45.833 0.00 0.00 0.00 2.69
499 502 3.920231 TCTCATCTGGGTCTTTCATGG 57.080 47.619 0.00 0.00 0.00 3.66
501 504 3.588842 TCTCATCTGGGTCTTTCATGGTT 59.411 43.478 0.00 0.00 0.00 3.67
503 506 3.074390 TCATCTGGGTCTTTCATGGTTGT 59.926 43.478 0.00 0.00 0.00 3.32
506 509 1.142060 TGGGTCTTTCATGGTTGTCGT 59.858 47.619 0.00 0.00 0.00 4.34
536 539 2.690367 GGAGAAGCTCCCTGGTCTT 58.310 57.895 1.97 0.00 44.36 3.01
595 605 1.063174 GACCTGTGCTGCGAATGAATC 59.937 52.381 0.00 0.00 0.00 2.52
617 627 6.695292 TCGTTTTTCTTCGGACTTGTATAC 57.305 37.500 0.00 0.00 0.00 1.47
631 641 7.254556 CGGACTTGTATACGTACAGTTATCTGA 60.255 40.741 7.81 0.00 43.76 3.27
636 646 1.747355 ACGTACAGTTATCTGACCCCG 59.253 52.381 7.81 6.31 43.76 5.73
653 663 4.716794 ACCCCGCAAATAAACCGATATAA 58.283 39.130 0.00 0.00 0.00 0.98
741 751 8.806429 ACATAAACATATGTGTGAATCTTGGA 57.194 30.769 9.63 0.00 39.05 3.53
762 772 1.748493 GCAGATCAACGGCCCATAAAA 59.252 47.619 0.00 0.00 33.80 1.52
763 773 2.223572 GCAGATCAACGGCCCATAAAAG 60.224 50.000 0.00 0.00 33.80 2.27
764 774 2.024414 AGATCAACGGCCCATAAAAGC 58.976 47.619 0.00 0.00 0.00 3.51
768 778 0.891904 AACGGCCCATAAAAGCGTGT 60.892 50.000 0.00 0.00 0.00 4.49
770 780 1.153842 GGCCCATAAAAGCGTGTGC 60.154 57.895 0.00 0.00 43.24 4.57
771 781 1.153842 GCCCATAAAAGCGTGTGCC 60.154 57.895 0.00 0.00 44.31 5.01
797 807 4.151258 CACTTGTGTGCTGTAAATCCTG 57.849 45.455 0.00 0.00 37.38 3.86
799 809 4.754618 CACTTGTGTGCTGTAAATCCTGTA 59.245 41.667 0.00 0.00 37.38 2.74
804 814 3.055385 TGTGCTGTAAATCCTGTACCTCC 60.055 47.826 0.00 0.00 0.00 4.30
815 825 5.319043 TCCTGTACCTCCTCATTTGTTTT 57.681 39.130 0.00 0.00 0.00 2.43
830 840 7.205992 TCATTTGTTTTGTCCGAATTCAATCA 58.794 30.769 6.22 0.00 0.00 2.57
864 876 1.070821 TTCGCGCTGAAGTTCATCTG 58.929 50.000 5.91 0.57 31.44 2.90
869 881 2.928301 GCGCTGAAGTTCATCTGACTGA 60.928 50.000 5.91 0.00 0.00 3.41
870 882 3.320626 CGCTGAAGTTCATCTGACTGAA 58.679 45.455 5.91 0.42 32.84 3.02
917 929 1.618837 TGTATATTGCTCTCCTCGGCC 59.381 52.381 0.00 0.00 0.00 6.13
941 953 0.321671 TGCTCTGTTCTTCTTCCCCG 59.678 55.000 0.00 0.00 0.00 5.73
961 973 0.768221 TCCCTGCACTTTCCTCCACT 60.768 55.000 0.00 0.00 0.00 4.00
1016 1028 2.974698 GATGGAGGCCGCGATTGG 60.975 66.667 8.23 0.00 0.00 3.16
1210 1222 2.676822 TCGCTCGCCTCAAGGACT 60.677 61.111 0.00 0.00 37.39 3.85
1275 1287 2.996395 CTCCAGCAGCAGGTCCAT 59.004 61.111 3.35 0.00 0.00 3.41
1320 1332 5.809001 AGATCCATCATATGCGGTACAAAT 58.191 37.500 9.93 0.00 0.00 2.32
1325 1337 5.487433 CATCATATGCGGTACAAATAGGGA 58.513 41.667 0.00 0.00 0.00 4.20
1326 1338 5.755409 TCATATGCGGTACAAATAGGGAT 57.245 39.130 0.00 0.00 0.00 3.85
1327 1339 6.121776 TCATATGCGGTACAAATAGGGATT 57.878 37.500 0.00 0.00 0.00 3.01
1356 1368 2.485426 CACATGCCTCACACTAGTTTGG 59.515 50.000 9.10 3.00 0.00 3.28
1372 1384 5.121380 AGTTTGGACTTGGATCATATGCT 57.879 39.130 0.00 0.00 29.87 3.79
1495 1509 8.337739 TCTACCTTCAGTCTTCTCTAAATAGGT 58.662 37.037 0.00 0.00 0.00 3.08
1677 1720 5.588648 ACATCCGTGTTCTTTCTTTTCTTCA 59.411 36.000 0.00 0.00 34.01 3.02
1682 1725 5.965918 CGTGTTCTTTCTTTTCTTCAGGTTC 59.034 40.000 0.00 0.00 0.00 3.62
1690 1733 2.386661 TTCTTCAGGTTCGGATCAGC 57.613 50.000 0.00 0.00 0.00 4.26
1730 1773 5.659463 TCAAATAGGCACATAACAAATGGC 58.341 37.500 0.00 0.00 39.10 4.40
1780 1823 1.616159 TTACCACAGAAAAGCCTGGC 58.384 50.000 11.65 11.65 38.44 4.85
1807 1850 9.757227 CAAATTATTGTTCTACCTGGTCAAAAA 57.243 29.630 0.63 0.00 0.00 1.94
1819 1862 6.657875 ACCTGGTCAAAAATTCATTGGAAAA 58.342 32.000 0.00 0.00 36.43 2.29
1820 1863 6.767423 ACCTGGTCAAAAATTCATTGGAAAAG 59.233 34.615 0.00 0.10 36.43 2.27
1821 1864 6.767423 CCTGGTCAAAAATTCATTGGAAAAGT 59.233 34.615 4.62 0.00 36.43 2.66
1824 1867 6.017192 GGTCAAAAATTCATTGGAAAAGTGGG 60.017 38.462 4.62 0.00 36.43 4.61
1825 1868 5.530543 TCAAAAATTCATTGGAAAAGTGGGC 59.469 36.000 4.62 0.00 36.43 5.36
1931 1979 7.865385 CGTCACCAAAGATTTATTTTTCTTCCA 59.135 33.333 0.00 0.00 31.09 3.53
1971 2019 6.813649 TGTTCTCCTAATCTTCTTCACATTCG 59.186 38.462 0.00 0.00 0.00 3.34
1991 2039 1.303236 CTTCCATGCCGGTGACCAA 60.303 57.895 1.90 0.00 35.57 3.67
2018 2069 5.221661 CCCAACACAACTACTAGAAAGAGGT 60.222 44.000 0.00 0.00 0.00 3.85
2039 2090 0.874175 CGTGTGTGCAGGAACGAAGA 60.874 55.000 8.83 0.00 38.27 2.87
2045 2096 1.795286 GTGCAGGAACGAAGACAGAAG 59.205 52.381 0.00 0.00 0.00 2.85
2057 2108 5.817816 ACGAAGACAGAAGAAAGTTTGATGT 59.182 36.000 0.00 0.00 0.00 3.06
2064 2115 6.998074 ACAGAAGAAAGTTTGATGTGGTCATA 59.002 34.615 0.00 0.00 36.54 2.15
2130 2181 7.069950 AGTGAAGGATTCCCTAATTTAATTGGC 59.930 37.037 0.00 0.00 46.93 4.52
2131 2182 6.326323 TGAAGGATTCCCTAATTTAATTGGCC 59.674 38.462 0.00 0.00 46.93 5.36
2136 2709 7.016563 GGATTCCCTAATTTAATTGGCCTCAAT 59.983 37.037 3.32 0.00 44.77 2.57
2161 2734 4.699925 TCCCAGTACTTAAACACAGCTT 57.300 40.909 0.00 0.00 0.00 3.74
2173 2748 2.203538 CAGCTTGGGCCCTGTGTT 60.204 61.111 25.70 8.08 39.73 3.32
2180 2755 2.430610 GGGCCCTGTGTTTGTGCAA 61.431 57.895 17.04 0.00 0.00 4.08
2181 2756 1.227234 GGCCCTGTGTTTGTGCAAC 60.227 57.895 0.00 0.00 35.71 4.17
2595 3173 4.642437 TGAAGCAGAACGAGTAGATGAGAT 59.358 41.667 0.00 0.00 0.00 2.75
2622 3200 4.104831 AGGGGAGGTGATGCTAATATACC 58.895 47.826 0.00 0.00 0.00 2.73
2624 3202 5.017431 AGGGGAGGTGATGCTAATATACCTA 59.983 44.000 0.00 0.00 41.58 3.08
2628 3206 7.285858 GGGAGGTGATGCTAATATACCTAGTAG 59.714 44.444 0.00 0.00 41.58 2.57
2638 3216 2.913603 TACCTAGTAGCAGTGGTGGT 57.086 50.000 4.76 6.20 38.25 4.16
2641 3219 3.721021 ACCTAGTAGCAGTGGTGGTAAT 58.279 45.455 4.76 0.00 38.37 1.89
2644 3222 5.903589 ACCTAGTAGCAGTGGTGGTAATAAT 59.096 40.000 4.76 0.00 36.92 1.28
2654 3232 6.154363 CAGTGGTGGTAATAATTGGTCCAAAT 59.846 38.462 8.75 2.34 0.00 2.32
2657 3235 6.726299 TGGTGGTAATAATTGGTCCAAATCAA 59.274 34.615 8.75 0.00 0.00 2.57
2660 3238 6.382570 TGGTAATAATTGGTCCAAATCAAGGG 59.617 38.462 8.75 0.00 0.00 3.95
2695 3273 3.933955 TCACAGAAGAAAACGACGGAAAA 59.066 39.130 0.00 0.00 0.00 2.29
2710 3288 3.056465 ACGGAAAACCTGTGAAAGCAAAA 60.056 39.130 0.00 0.00 31.94 2.44
2796 3374 4.323792 CCATGTCAAGAGTGAGGGTTGTAT 60.324 45.833 0.00 0.00 33.27 2.29
2834 3412 1.172180 CCAGCCGCCAAACTCTTCAA 61.172 55.000 0.00 0.00 0.00 2.69
2937 3515 1.017177 TACATCCGCGCACCTGTTTC 61.017 55.000 8.75 0.00 0.00 2.78
2948 3526 4.057432 CGCACCTGTTTCCATTTTCAATT 58.943 39.130 0.00 0.00 0.00 2.32
2951 3529 6.200808 GCACCTGTTTCCATTTTCAATTTTG 58.799 36.000 0.00 0.00 0.00 2.44
2955 3533 9.454859 ACCTGTTTCCATTTTCAATTTTGTTTA 57.545 25.926 0.00 0.00 0.00 2.01
2956 3534 9.715123 CCTGTTTCCATTTTCAATTTTGTTTAC 57.285 29.630 0.00 0.00 0.00 2.01
3131 3711 6.021030 TCTGATAGGTAACAGGTAACCTTGT 58.979 40.000 0.00 0.00 43.77 3.16
3247 3827 6.866480 TCAGAGTGCACAAAATTTCTCTTTT 58.134 32.000 21.04 0.00 31.19 2.27
3313 3893 9.006839 ACAAGAATACATGTTATAGCATGATGG 57.993 33.333 29.52 15.84 46.65 3.51
3426 4007 9.905713 TTTCTAATAGCCAATCTACAATGTCTT 57.094 29.630 0.00 0.00 0.00 3.01
3594 4176 9.542462 TTTCAATAGGATACAGGAAATAACTCG 57.458 33.333 0.00 0.00 41.41 4.18
4046 4635 9.466497 AAAGGTTTCTGCTCATTTTAGATGATA 57.534 29.630 0.00 0.00 0.00 2.15
4312 4901 6.721318 TCAAATAGCAGAGAAGTTAATGGGT 58.279 36.000 0.00 0.00 0.00 4.51
5023 5615 7.821359 CAGTATGACTCTTTCTTCTTCCAATCA 59.179 37.037 0.00 0.00 39.69 2.57
5582 6174 2.762327 CCACATCCAGGCTTAAAGCATT 59.238 45.455 0.00 0.00 44.75 3.56
5743 6335 1.668751 ACGAAGTTGACGTTGTGCAAT 59.331 42.857 0.00 0.00 37.78 3.56
5834 6426 3.416156 GAGAAATGTTCCTGCAGTTCCT 58.584 45.455 13.81 0.00 42.34 3.36
6100 6692 6.588719 TCATCCGGAGAAACATTGAAAATT 57.411 33.333 11.34 0.00 0.00 1.82
6110 6702 4.503741 ACATTGAAAATTGACGGTCCAG 57.496 40.909 5.55 0.00 0.00 3.86
6299 6891 7.387397 TGGAAATAAGCAATTGTGGAAAACATC 59.613 33.333 7.40 0.00 38.99 3.06
6371 6963 2.023404 TGTACTGCCCTCCCATCTCTTA 60.023 50.000 0.00 0.00 0.00 2.10
6386 6978 9.401058 TCCCATCTCTTAAAAATCTCAGAATTC 57.599 33.333 0.00 0.00 0.00 2.17
6420 7012 3.636153 AACAGGGAAGTGGCTATCTTC 57.364 47.619 8.37 8.37 40.10 2.87
6454 7046 1.278238 CGACGGCTCTAATGGTGTTC 58.722 55.000 0.00 0.00 0.00 3.18
6456 7048 2.000447 GACGGCTCTAATGGTGTTCAC 59.000 52.381 0.00 0.00 0.00 3.18
6648 7240 4.140536 CTCAAGGAGATGGAAATTAGGGC 58.859 47.826 0.00 0.00 0.00 5.19
6688 7280 1.478631 GCCATAGCAAGGAAGGCTTT 58.521 50.000 0.00 0.00 42.62 3.51
6755 7347 0.108424 GCTGCTCTCATCTTCGGTGT 60.108 55.000 0.00 0.00 0.00 4.16
6942 7535 3.379688 TCTCTACAGCTACAGTCATGCAG 59.620 47.826 0.00 0.00 0.00 4.41
7011 7604 2.632537 AGAGGGCTTCCAGTTCCTTAA 58.367 47.619 0.00 0.00 0.00 1.85
7021 7614 4.985538 TCCAGTTCCTTAAGCATTTGAGT 58.014 39.130 0.00 0.00 0.00 3.41
7802 8396 5.473504 TCTTCCTTGCACCAGTTCTATTTTC 59.526 40.000 0.00 0.00 0.00 2.29
7803 8397 4.079253 TCCTTGCACCAGTTCTATTTTCC 58.921 43.478 0.00 0.00 0.00 3.13
7804 8398 3.193479 CCTTGCACCAGTTCTATTTTCCC 59.807 47.826 0.00 0.00 0.00 3.97
7805 8399 2.802719 TGCACCAGTTCTATTTTCCCC 58.197 47.619 0.00 0.00 0.00 4.81
7831 8425 7.308229 CCTCTGGAATATAAGAAATGGAAAGCG 60.308 40.741 0.00 0.00 0.00 4.68
7919 8514 2.029290 AGTCGGTTCTGCTGTTATTCGT 60.029 45.455 0.00 0.00 0.00 3.85
7932 8527 6.697455 TGCTGTTATTCGTCTCATCTAATGAC 59.303 38.462 0.00 0.00 35.06 3.06
7955 8550 7.178983 TGACCTCAAAAGGATGATTAATTTGCT 59.821 33.333 0.00 0.00 46.67 3.91
7986 8581 2.862536 CAGGCGGATCTGCATTATATCG 59.137 50.000 27.26 4.21 36.28 2.92
8012 8607 4.520111 TCTGATGTTGATTCACAAGTTGGG 59.480 41.667 7.96 2.56 39.30 4.12
8053 8648 1.600957 CCTTCCTTGCTGCATCATACG 59.399 52.381 1.84 0.00 0.00 3.06
8055 8650 2.916702 TCCTTGCTGCATCATACGAT 57.083 45.000 1.84 0.00 0.00 3.73
8057 8652 3.133691 TCCTTGCTGCATCATACGATTC 58.866 45.455 1.84 0.00 0.00 2.52
8058 8653 2.874086 CCTTGCTGCATCATACGATTCA 59.126 45.455 1.84 0.00 0.00 2.57
8059 8654 3.303593 CCTTGCTGCATCATACGATTCAC 60.304 47.826 1.84 0.00 0.00 3.18
8060 8655 3.183793 TGCTGCATCATACGATTCACT 57.816 42.857 0.00 0.00 0.00 3.41
8061 8656 3.126073 TGCTGCATCATACGATTCACTC 58.874 45.455 0.00 0.00 0.00 3.51
8102 8699 1.903294 GAGCTCTCAGATGCACCCA 59.097 57.895 6.43 0.00 0.00 4.51
8103 8700 0.179078 GAGCTCTCAGATGCACCCAG 60.179 60.000 6.43 0.00 0.00 4.45
8115 8712 2.571212 TGCACCCAGTGAACAGTAAAG 58.429 47.619 0.00 0.00 35.23 1.85
8117 8714 3.134985 TGCACCCAGTGAACAGTAAAGTA 59.865 43.478 0.00 0.00 35.23 2.24
8141 8738 1.952193 AAAATTGTGGTGCAAGGTGC 58.048 45.000 0.00 0.00 45.29 5.01
8142 8739 1.122227 AAATTGTGGTGCAAGGTGCT 58.878 45.000 1.43 0.00 45.31 4.40
8143 8740 0.675633 AATTGTGGTGCAAGGTGCTC 59.324 50.000 1.43 0.00 45.31 4.26
8148 8745 3.730761 GTGCAAGGTGCTCCTGCG 61.731 66.667 8.37 4.13 45.31 5.18
8155 8752 4.077188 GTGCTCCTGCGCGTGAAC 62.077 66.667 8.43 0.00 43.34 3.18
8156 8753 4.299547 TGCTCCTGCGCGTGAACT 62.300 61.111 8.43 0.00 43.34 3.01
8157 8754 3.482783 GCTCCTGCGCGTGAACTC 61.483 66.667 8.43 0.00 0.00 3.01
8158 8755 2.259818 CTCCTGCGCGTGAACTCT 59.740 61.111 8.43 0.00 0.00 3.24
8159 8756 2.049156 TCCTGCGCGTGAACTCTG 60.049 61.111 8.43 0.00 0.00 3.35
8160 8757 3.782244 CCTGCGCGTGAACTCTGC 61.782 66.667 8.43 0.00 0.00 4.26
8161 8758 3.037833 CTGCGCGTGAACTCTGCA 61.038 61.111 8.43 0.00 0.00 4.41
8162 8759 2.587473 TGCGCGTGAACTCTGCAA 60.587 55.556 8.43 0.00 31.69 4.08
8163 8760 2.104770 CTGCGCGTGAACTCTGCAAA 62.105 55.000 8.43 0.00 34.78 3.68
8164 8761 1.207593 GCGCGTGAACTCTGCAAAT 59.792 52.632 8.43 0.00 0.00 2.32
8165 8762 0.385974 GCGCGTGAACTCTGCAAATT 60.386 50.000 8.43 0.00 0.00 1.82
8166 8763 1.925946 GCGCGTGAACTCTGCAAATTT 60.926 47.619 8.43 0.00 0.00 1.82
8167 8764 1.710249 CGCGTGAACTCTGCAAATTTG 59.290 47.619 14.03 14.03 0.00 2.32
8168 8765 2.731217 GCGTGAACTCTGCAAATTTGT 58.269 42.857 19.03 0.00 0.00 2.83
8169 8766 2.468777 GCGTGAACTCTGCAAATTTGTG 59.531 45.455 19.03 12.35 0.00 3.33
8170 8767 3.694734 CGTGAACTCTGCAAATTTGTGT 58.305 40.909 19.03 10.33 0.00 3.72
8171 8768 3.483196 CGTGAACTCTGCAAATTTGTGTG 59.517 43.478 19.03 14.35 0.00 3.82
8172 8769 4.671377 GTGAACTCTGCAAATTTGTGTGA 58.329 39.130 19.03 13.02 0.00 3.58
8173 8770 5.101628 GTGAACTCTGCAAATTTGTGTGAA 58.898 37.500 19.03 1.27 0.00 3.18
8174 8771 5.230726 GTGAACTCTGCAAATTTGTGTGAAG 59.769 40.000 19.03 11.77 0.00 3.02
8175 8772 4.989279 ACTCTGCAAATTTGTGTGAAGT 57.011 36.364 19.03 12.31 0.00 3.01
8176 8773 5.329035 ACTCTGCAAATTTGTGTGAAGTT 57.671 34.783 19.03 1.55 0.00 2.66
8177 8774 5.723295 ACTCTGCAAATTTGTGTGAAGTTT 58.277 33.333 19.03 0.72 0.00 2.66
8178 8775 5.577945 ACTCTGCAAATTTGTGTGAAGTTTG 59.422 36.000 19.03 0.00 33.98 2.93
8179 8776 4.869297 TCTGCAAATTTGTGTGAAGTTTGG 59.131 37.500 19.03 0.00 32.08 3.28
8180 8777 4.825422 TGCAAATTTGTGTGAAGTTTGGA 58.175 34.783 19.03 0.00 32.08 3.53
8181 8778 4.629200 TGCAAATTTGTGTGAAGTTTGGAC 59.371 37.500 19.03 0.00 32.08 4.02
8182 8779 4.629200 GCAAATTTGTGTGAAGTTTGGACA 59.371 37.500 19.03 0.00 32.08 4.02
8183 8780 5.294060 GCAAATTTGTGTGAAGTTTGGACAT 59.706 36.000 19.03 0.00 32.08 3.06
8184 8781 6.183360 GCAAATTTGTGTGAAGTTTGGACATT 60.183 34.615 19.03 0.00 32.08 2.71
8185 8782 7.401080 CAAATTTGTGTGAAGTTTGGACATTC 58.599 34.615 10.15 0.00 0.00 2.67
8186 8783 3.961477 TGTGTGAAGTTTGGACATTCG 57.039 42.857 0.00 0.00 0.00 3.34
8187 8784 3.536570 TGTGTGAAGTTTGGACATTCGA 58.463 40.909 0.00 0.00 0.00 3.71
8188 8785 3.559655 TGTGTGAAGTTTGGACATTCGAG 59.440 43.478 0.00 0.00 0.00 4.04
8189 8786 3.058914 GTGTGAAGTTTGGACATTCGAGG 60.059 47.826 0.00 0.00 0.00 4.63
8190 8787 3.181459 TGTGAAGTTTGGACATTCGAGGA 60.181 43.478 0.00 0.00 0.00 3.71
8191 8788 3.433615 GTGAAGTTTGGACATTCGAGGAG 59.566 47.826 0.00 0.00 0.00 3.69
8192 8789 2.100605 AGTTTGGACATTCGAGGAGC 57.899 50.000 0.00 0.00 0.00 4.70
8193 8790 1.625818 AGTTTGGACATTCGAGGAGCT 59.374 47.619 0.00 0.00 0.00 4.09
8194 8791 2.003301 GTTTGGACATTCGAGGAGCTC 58.997 52.381 4.71 4.71 0.00 4.09
8195 8792 1.266178 TTGGACATTCGAGGAGCTCA 58.734 50.000 17.19 0.00 0.00 4.26
8196 8793 1.489481 TGGACATTCGAGGAGCTCAT 58.511 50.000 17.19 8.81 0.00 2.90
8197 8794 1.137675 TGGACATTCGAGGAGCTCATG 59.862 52.381 17.19 12.42 0.00 3.07
8198 8795 1.539929 GGACATTCGAGGAGCTCATGG 60.540 57.143 17.19 10.45 0.00 3.66
8199 8796 0.179062 ACATTCGAGGAGCTCATGGC 60.179 55.000 17.19 0.00 42.19 4.40
8200 8797 0.179065 CATTCGAGGAGCTCATGGCA 60.179 55.000 17.19 0.00 44.79 4.92
8201 8798 0.543277 ATTCGAGGAGCTCATGGCAA 59.457 50.000 17.19 6.87 44.79 4.52
8202 8799 0.324614 TTCGAGGAGCTCATGGCAAA 59.675 50.000 17.19 0.00 44.79 3.68
8203 8800 0.324614 TCGAGGAGCTCATGGCAAAA 59.675 50.000 17.19 0.00 44.79 2.44
8204 8801 1.167851 CGAGGAGCTCATGGCAAAAA 58.832 50.000 17.19 0.00 44.79 1.94
8224 8821 6.558771 AAAAAGGCAAAATTAGGCATGAAC 57.441 33.333 0.00 0.00 0.00 3.18
8225 8822 4.888326 AAGGCAAAATTAGGCATGAACA 57.112 36.364 0.00 0.00 0.00 3.18
8226 8823 4.460948 AGGCAAAATTAGGCATGAACAG 57.539 40.909 0.00 0.00 0.00 3.16
8227 8824 3.834231 AGGCAAAATTAGGCATGAACAGT 59.166 39.130 0.00 0.00 0.00 3.55
8228 8825 3.928375 GGCAAAATTAGGCATGAACAGTG 59.072 43.478 0.00 0.00 0.00 3.66
8229 8826 3.368843 GCAAAATTAGGCATGAACAGTGC 59.631 43.478 0.00 0.00 41.78 4.40
8230 8827 3.492421 AAATTAGGCATGAACAGTGCG 57.508 42.857 0.00 0.00 43.40 5.34
8231 8828 1.382522 ATTAGGCATGAACAGTGCGG 58.617 50.000 0.00 0.00 43.40 5.69
8232 8829 0.036164 TTAGGCATGAACAGTGCGGT 59.964 50.000 0.00 0.00 43.40 5.68
8233 8830 0.036164 TAGGCATGAACAGTGCGGTT 59.964 50.000 0.00 0.00 43.40 4.44
8234 8831 0.823356 AGGCATGAACAGTGCGGTTT 60.823 50.000 0.00 0.00 43.40 3.27
8235 8832 0.878416 GGCATGAACAGTGCGGTTTA 59.122 50.000 0.00 0.00 43.40 2.01
8236 8833 1.268352 GGCATGAACAGTGCGGTTTAA 59.732 47.619 0.00 0.00 43.40 1.52
8237 8834 2.287909 GGCATGAACAGTGCGGTTTAAA 60.288 45.455 0.00 0.00 43.40 1.52
8238 8835 3.376540 GCATGAACAGTGCGGTTTAAAA 58.623 40.909 0.00 0.00 32.29 1.52
8239 8836 3.799420 GCATGAACAGTGCGGTTTAAAAA 59.201 39.130 0.00 0.00 32.29 1.94
8240 8837 4.085107 GCATGAACAGTGCGGTTTAAAAAG 60.085 41.667 0.00 0.00 32.29 2.27
8241 8838 4.966965 TGAACAGTGCGGTTTAAAAAGA 57.033 36.364 0.00 0.00 0.00 2.52
8242 8839 5.312120 TGAACAGTGCGGTTTAAAAAGAA 57.688 34.783 0.00 0.00 0.00 2.52
8243 8840 5.710984 TGAACAGTGCGGTTTAAAAAGAAA 58.289 33.333 0.00 0.00 0.00 2.52
8244 8841 6.334202 TGAACAGTGCGGTTTAAAAAGAAAT 58.666 32.000 0.00 0.00 0.00 2.17
8245 8842 6.474102 TGAACAGTGCGGTTTAAAAAGAAATC 59.526 34.615 0.00 0.00 0.00 2.17
8246 8843 6.144078 ACAGTGCGGTTTAAAAAGAAATCT 57.856 33.333 0.00 0.00 0.00 2.40
8247 8844 6.206498 ACAGTGCGGTTTAAAAAGAAATCTC 58.794 36.000 0.00 0.00 0.00 2.75
8248 8845 6.183360 ACAGTGCGGTTTAAAAAGAAATCTCA 60.183 34.615 0.00 0.00 0.00 3.27
8249 8846 6.142320 CAGTGCGGTTTAAAAAGAAATCTCAC 59.858 38.462 0.00 0.00 0.00 3.51
8250 8847 5.974751 GTGCGGTTTAAAAAGAAATCTCACA 59.025 36.000 0.00 0.00 0.00 3.58
8251 8848 5.974751 TGCGGTTTAAAAAGAAATCTCACAC 59.025 36.000 0.00 0.00 0.00 3.82
8252 8849 5.401376 GCGGTTTAAAAAGAAATCTCACACC 59.599 40.000 0.00 0.00 0.00 4.16
8253 8850 5.918576 CGGTTTAAAAAGAAATCTCACACCC 59.081 40.000 0.00 0.00 0.00 4.61
8254 8851 6.238925 CGGTTTAAAAAGAAATCTCACACCCT 60.239 38.462 0.00 0.00 0.00 4.34
8255 8852 6.923508 GGTTTAAAAAGAAATCTCACACCCTG 59.076 38.462 0.00 0.00 0.00 4.45
8256 8853 7.201875 GGTTTAAAAAGAAATCTCACACCCTGA 60.202 37.037 0.00 0.00 0.00 3.86
8257 8854 7.889873 TTAAAAAGAAATCTCACACCCTGAA 57.110 32.000 0.00 0.00 0.00 3.02
8258 8855 6.790232 AAAAAGAAATCTCACACCCTGAAA 57.210 33.333 0.00 0.00 0.00 2.69
8259 8856 6.983906 AAAAGAAATCTCACACCCTGAAAT 57.016 33.333 0.00 0.00 0.00 2.17
8260 8857 6.983906 AAAGAAATCTCACACCCTGAAATT 57.016 33.333 0.00 0.00 0.00 1.82
8261 8858 6.983906 AAGAAATCTCACACCCTGAAATTT 57.016 33.333 0.00 0.00 0.00 1.82
8262 8859 6.336842 AGAAATCTCACACCCTGAAATTTG 57.663 37.500 0.00 0.00 0.00 2.32
8263 8860 5.835280 AGAAATCTCACACCCTGAAATTTGT 59.165 36.000 0.00 0.00 0.00 2.83
8264 8861 5.712152 AATCTCACACCCTGAAATTTGTC 57.288 39.130 0.00 0.00 0.00 3.18
8265 8862 4.437682 TCTCACACCCTGAAATTTGTCT 57.562 40.909 0.00 0.00 0.00 3.41
8266 8863 4.792068 TCTCACACCCTGAAATTTGTCTT 58.208 39.130 0.00 0.00 0.00 3.01
8267 8864 5.200483 TCTCACACCCTGAAATTTGTCTTT 58.800 37.500 0.00 0.00 0.00 2.52
8268 8865 5.656416 TCTCACACCCTGAAATTTGTCTTTT 59.344 36.000 0.00 0.00 0.00 2.27
8269 8866 6.154363 TCTCACACCCTGAAATTTGTCTTTTT 59.846 34.615 0.00 0.00 0.00 1.94
8290 8887 6.839124 TTTTGCCATGATCTACTTGAATGT 57.161 33.333 0.00 0.00 0.00 2.71
8291 8888 6.441093 TTTGCCATGATCTACTTGAATGTC 57.559 37.500 0.00 0.00 0.00 3.06
8292 8889 4.454678 TGCCATGATCTACTTGAATGTCC 58.545 43.478 0.00 0.00 0.00 4.02
8293 8890 4.080413 TGCCATGATCTACTTGAATGTCCA 60.080 41.667 0.00 0.00 0.00 4.02
8294 8891 4.883585 GCCATGATCTACTTGAATGTCCAA 59.116 41.667 0.00 0.00 0.00 3.53
8295 8892 5.357878 GCCATGATCTACTTGAATGTCCAAA 59.642 40.000 0.00 0.00 0.00 3.28
8296 8893 6.678900 GCCATGATCTACTTGAATGTCCAAAC 60.679 42.308 0.00 0.00 0.00 2.93
8297 8894 6.600822 CCATGATCTACTTGAATGTCCAAACT 59.399 38.462 0.00 0.00 0.00 2.66
8298 8895 7.121759 CCATGATCTACTTGAATGTCCAAACTT 59.878 37.037 0.00 0.00 0.00 2.66
8299 8896 8.517878 CATGATCTACTTGAATGTCCAAACTTT 58.482 33.333 0.00 0.00 0.00 2.66
8300 8897 9.739276 ATGATCTACTTGAATGTCCAAACTTTA 57.261 29.630 0.00 0.00 0.00 1.85
8301 8898 8.999431 TGATCTACTTGAATGTCCAAACTTTAC 58.001 33.333 0.00 0.00 0.00 2.01
8302 8899 8.918202 ATCTACTTGAATGTCCAAACTTTACA 57.082 30.769 0.00 0.00 0.00 2.41
8303 8900 8.740123 TCTACTTGAATGTCCAAACTTTACAA 57.260 30.769 0.00 0.00 0.00 2.41
8304 8901 9.179909 TCTACTTGAATGTCCAAACTTTACAAA 57.820 29.630 0.00 0.00 0.00 2.83
8305 8902 9.796120 CTACTTGAATGTCCAAACTTTACAAAA 57.204 29.630 0.00 0.00 0.00 2.44
8307 8904 9.665719 ACTTGAATGTCCAAACTTTACAAAATT 57.334 25.926 0.00 0.00 0.00 1.82
8311 8908 9.220635 GAATGTCCAAACTTTACAAAATTTTGC 57.779 29.630 26.94 9.60 41.79 3.68
8312 8909 7.672983 TGTCCAAACTTTACAAAATTTTGCA 57.327 28.000 26.94 14.68 41.79 4.08
8313 8910 7.522374 TGTCCAAACTTTACAAAATTTTGCAC 58.478 30.769 26.94 10.77 41.79 4.57
8314 8911 6.680758 GTCCAAACTTTACAAAATTTTGCACG 59.319 34.615 26.94 15.52 41.79 5.34
8315 8912 5.962423 CCAAACTTTACAAAATTTTGCACGG 59.038 36.000 26.94 17.79 41.79 4.94
8316 8913 6.183360 CCAAACTTTACAAAATTTTGCACGGA 60.183 34.615 26.94 10.67 41.79 4.69
8317 8914 6.969828 AACTTTACAAAATTTTGCACGGAA 57.030 29.167 26.94 14.68 41.79 4.30
8318 8915 7.546778 AACTTTACAAAATTTTGCACGGAAT 57.453 28.000 26.94 11.11 41.79 3.01
8319 8916 7.546778 ACTTTACAAAATTTTGCACGGAATT 57.453 28.000 26.94 10.46 41.79 2.17
8320 8917 7.626446 ACTTTACAAAATTTTGCACGGAATTC 58.374 30.769 26.94 0.00 41.79 2.17
8321 8918 7.278868 ACTTTACAAAATTTTGCACGGAATTCA 59.721 29.630 26.94 0.00 41.79 2.57
8322 8919 5.402464 ACAAAATTTTGCACGGAATTCAC 57.598 34.783 26.94 0.00 41.79 3.18
8323 8920 4.026145 ACAAAATTTTGCACGGAATTCACG 60.026 37.500 26.94 10.85 41.79 4.35
8324 8921 3.363341 AATTTTGCACGGAATTCACGT 57.637 38.095 13.89 13.89 46.82 4.49
8325 8922 4.491234 AATTTTGCACGGAATTCACGTA 57.509 36.364 17.67 6.53 43.58 3.57
8326 8923 4.695217 ATTTTGCACGGAATTCACGTAT 57.305 36.364 17.67 8.13 43.58 3.06
8327 8924 5.804692 ATTTTGCACGGAATTCACGTATA 57.195 34.783 17.67 9.76 43.58 1.47
8328 8925 4.850859 TTTGCACGGAATTCACGTATAG 57.149 40.909 17.67 9.86 43.58 1.31
8329 8926 2.816689 TGCACGGAATTCACGTATAGG 58.183 47.619 17.67 9.59 43.58 2.57
8330 8927 2.427812 TGCACGGAATTCACGTATAGGA 59.572 45.455 17.67 7.97 43.58 2.94
8331 8928 3.050619 GCACGGAATTCACGTATAGGAG 58.949 50.000 17.67 8.79 43.58 3.69
8332 8929 3.050619 CACGGAATTCACGTATAGGAGC 58.949 50.000 17.67 0.00 43.58 4.70
8333 8930 2.691526 ACGGAATTCACGTATAGGAGCA 59.308 45.455 16.92 0.00 43.60 4.26
8334 8931 3.321111 ACGGAATTCACGTATAGGAGCAT 59.679 43.478 16.92 0.00 43.60 3.79
8335 8932 3.921021 CGGAATTCACGTATAGGAGCATC 59.079 47.826 7.93 0.00 0.00 3.91
8336 8933 4.321304 CGGAATTCACGTATAGGAGCATCT 60.321 45.833 7.93 0.00 33.73 2.90
8337 8934 5.542779 GGAATTCACGTATAGGAGCATCTT 58.457 41.667 7.93 0.00 33.73 2.40
8338 8935 5.406780 GGAATTCACGTATAGGAGCATCTTG 59.593 44.000 7.93 0.00 33.73 3.02
8339 8936 3.371102 TCACGTATAGGAGCATCTTGC 57.629 47.619 0.00 0.00 45.46 4.01
8400 8997 6.478512 TTATTTTATTGTTCATCCCTGGGC 57.521 37.500 8.22 0.00 0.00 5.36
8401 8998 3.756082 TTTATTGTTCATCCCTGGGCT 57.244 42.857 8.22 0.00 0.00 5.19
8402 8999 3.297134 TTATTGTTCATCCCTGGGCTC 57.703 47.619 8.22 0.00 0.00 4.70
8403 9000 1.002069 ATTGTTCATCCCTGGGCTCA 58.998 50.000 8.22 0.00 0.00 4.26
8404 9001 1.002069 TTGTTCATCCCTGGGCTCAT 58.998 50.000 8.22 0.00 0.00 2.90
8405 9002 0.548031 TGTTCATCCCTGGGCTCATC 59.452 55.000 8.22 0.00 0.00 2.92
8406 9003 0.842635 GTTCATCCCTGGGCTCATCT 59.157 55.000 8.22 0.00 0.00 2.90
8407 9004 2.050144 GTTCATCCCTGGGCTCATCTA 58.950 52.381 8.22 0.00 0.00 1.98
8408 9005 2.439507 GTTCATCCCTGGGCTCATCTAA 59.560 50.000 8.22 0.00 0.00 2.10
8409 9006 2.333069 TCATCCCTGGGCTCATCTAAG 58.667 52.381 8.22 0.00 0.00 2.18
8410 9007 2.090550 TCATCCCTGGGCTCATCTAAGA 60.091 50.000 8.22 0.00 0.00 2.10
8411 9008 1.794714 TCCCTGGGCTCATCTAAGAC 58.205 55.000 8.22 0.00 0.00 3.01
8412 9009 0.761802 CCCTGGGCTCATCTAAGACC 59.238 60.000 0.00 0.00 45.62 3.85
8415 9012 1.749033 GGGCTCATCTAAGACCGGG 59.251 63.158 6.32 0.00 33.85 5.73
8416 9013 1.049289 GGGCTCATCTAAGACCGGGT 61.049 60.000 6.32 0.00 33.85 5.28
8417 9014 0.831307 GGCTCATCTAAGACCGGGTT 59.169 55.000 6.32 0.57 0.00 4.11
8418 9015 1.202545 GGCTCATCTAAGACCGGGTTC 60.203 57.143 6.32 0.00 0.00 3.62
8419 9016 1.202545 GCTCATCTAAGACCGGGTTCC 60.203 57.143 6.32 0.00 0.00 3.62
8420 9017 2.108168 CTCATCTAAGACCGGGTTCCA 58.892 52.381 6.32 0.00 0.00 3.53
8421 9018 2.500098 CTCATCTAAGACCGGGTTCCAA 59.500 50.000 6.32 0.00 0.00 3.53
8422 9019 2.907696 TCATCTAAGACCGGGTTCCAAA 59.092 45.455 6.32 0.00 0.00 3.28
8423 9020 3.328343 TCATCTAAGACCGGGTTCCAAAA 59.672 43.478 6.32 0.00 0.00 2.44
8424 9021 3.130280 TCTAAGACCGGGTTCCAAAAC 57.870 47.619 6.32 0.00 34.46 2.43
8425 9022 1.802365 CTAAGACCGGGTTCCAAAACG 59.198 52.381 6.32 0.00 36.16 3.60
8426 9023 1.449726 AAGACCGGGTTCCAAAACGC 61.450 55.000 6.32 0.00 43.05 4.84
8427 9024 2.908428 ACCGGGTTCCAAAACGCC 60.908 61.111 6.32 0.00 43.44 5.68
8428 9025 4.032987 CCGGGTTCCAAAACGCCG 62.033 66.667 0.00 9.70 43.44 6.46
8429 9026 4.693525 CGGGTTCCAAAACGCCGC 62.694 66.667 0.00 0.00 43.44 6.53
8430 9027 4.693525 GGGTTCCAAAACGCCGCG 62.694 66.667 12.14 12.14 41.23 6.46
8431 9028 3.956317 GGTTCCAAAACGCCGCGT 61.956 61.111 13.85 13.85 43.97 6.01
8432 9029 2.426261 GTTCCAAAACGCCGCGTC 60.426 61.111 20.46 0.25 39.99 5.19
8433 9030 3.652000 TTCCAAAACGCCGCGTCC 61.652 61.111 20.46 0.00 39.99 4.79
8434 9031 4.612412 TCCAAAACGCCGCGTCCT 62.612 61.111 20.46 6.77 39.99 3.85
8435 9032 3.656045 CCAAAACGCCGCGTCCTT 61.656 61.111 20.46 12.82 39.99 3.36
8436 9033 2.127383 CAAAACGCCGCGTCCTTC 60.127 61.111 20.46 0.00 39.99 3.46
8437 9034 2.589442 AAAACGCCGCGTCCTTCA 60.589 55.556 20.46 0.00 39.99 3.02
8438 9035 2.888998 AAAACGCCGCGTCCTTCAC 61.889 57.895 20.46 0.00 39.99 3.18
8439 9036 3.802418 AAACGCCGCGTCCTTCACT 62.802 57.895 20.46 0.00 39.99 3.41
8440 9037 4.719369 ACGCCGCGTCCTTCACTC 62.719 66.667 13.85 0.00 33.69 3.51
8441 9038 4.717629 CGCCGCGTCCTTCACTCA 62.718 66.667 4.92 0.00 0.00 3.41
8442 9039 2.811317 GCCGCGTCCTTCACTCAG 60.811 66.667 4.92 0.00 0.00 3.35
8443 9040 2.811317 CCGCGTCCTTCACTCAGC 60.811 66.667 4.92 0.00 0.00 4.26
8444 9041 2.049156 CGCGTCCTTCACTCAGCA 60.049 61.111 0.00 0.00 0.00 4.41
8445 9042 2.091112 CGCGTCCTTCACTCAGCAG 61.091 63.158 0.00 0.00 0.00 4.24
8446 9043 2.386660 GCGTCCTTCACTCAGCAGC 61.387 63.158 0.00 0.00 0.00 5.25
8447 9044 1.291588 CGTCCTTCACTCAGCAGCT 59.708 57.895 0.00 0.00 0.00 4.24
8448 9045 0.528017 CGTCCTTCACTCAGCAGCTA 59.472 55.000 0.00 0.00 0.00 3.32
8449 9046 1.734047 CGTCCTTCACTCAGCAGCTAC 60.734 57.143 0.00 0.00 0.00 3.58
8450 9047 1.273606 GTCCTTCACTCAGCAGCTACA 59.726 52.381 0.00 0.00 0.00 2.74
8451 9048 1.547820 TCCTTCACTCAGCAGCTACAG 59.452 52.381 0.00 0.00 0.00 2.74
8452 9049 1.274728 CCTTCACTCAGCAGCTACAGT 59.725 52.381 0.00 0.00 0.00 3.55
8453 9050 2.493675 CCTTCACTCAGCAGCTACAGTA 59.506 50.000 5.97 0.00 0.00 2.74
8454 9051 3.056536 CCTTCACTCAGCAGCTACAGTAA 60.057 47.826 5.97 0.00 0.00 2.24
8455 9052 4.560128 CTTCACTCAGCAGCTACAGTAAA 58.440 43.478 5.97 0.00 0.00 2.01
8456 9053 4.179926 TCACTCAGCAGCTACAGTAAAG 57.820 45.455 5.97 0.00 0.00 1.85
8457 9054 2.670414 CACTCAGCAGCTACAGTAAAGC 59.330 50.000 5.97 0.00 40.40 3.51
8458 9055 2.300152 ACTCAGCAGCTACAGTAAAGCA 59.700 45.455 0.00 0.00 42.62 3.91
8459 9056 3.244215 ACTCAGCAGCTACAGTAAAGCAA 60.244 43.478 0.00 0.00 42.62 3.91
8460 9057 3.937706 CTCAGCAGCTACAGTAAAGCAAT 59.062 43.478 0.00 0.00 42.62 3.56
8461 9058 4.326826 TCAGCAGCTACAGTAAAGCAATT 58.673 39.130 0.00 0.00 42.62 2.32
8462 9059 4.761739 TCAGCAGCTACAGTAAAGCAATTT 59.238 37.500 0.00 0.00 42.62 1.82
8463 9060 4.855388 CAGCAGCTACAGTAAAGCAATTTG 59.145 41.667 0.00 0.00 42.62 2.32
8464 9061 4.082571 AGCAGCTACAGTAAAGCAATTTGG 60.083 41.667 0.00 0.00 42.62 3.28
8465 9062 4.082787 GCAGCTACAGTAAAGCAATTTGGA 60.083 41.667 0.00 0.00 42.62 3.53
8466 9063 5.393962 CAGCTACAGTAAAGCAATTTGGAC 58.606 41.667 0.00 0.00 42.62 4.02
8467 9064 4.459337 AGCTACAGTAAAGCAATTTGGACC 59.541 41.667 0.00 0.00 42.62 4.46
8468 9065 4.217550 GCTACAGTAAAGCAATTTGGACCA 59.782 41.667 0.00 0.00 39.83 4.02
8469 9066 4.584327 ACAGTAAAGCAATTTGGACCAC 57.416 40.909 0.00 0.00 0.00 4.16
8470 9067 3.957497 ACAGTAAAGCAATTTGGACCACA 59.043 39.130 0.00 0.00 0.00 4.17
8471 9068 4.404073 ACAGTAAAGCAATTTGGACCACAA 59.596 37.500 0.00 0.00 37.28 3.33
8472 9069 4.984161 CAGTAAAGCAATTTGGACCACAAG 59.016 41.667 0.00 0.00 40.82 3.16
8473 9070 2.531522 AAGCAATTTGGACCACAAGC 57.468 45.000 0.00 0.00 40.82 4.01
8474 9071 1.708341 AGCAATTTGGACCACAAGCT 58.292 45.000 0.00 0.00 40.82 3.74
8475 9072 2.041701 AGCAATTTGGACCACAAGCTT 58.958 42.857 0.00 0.00 40.82 3.74
8476 9073 3.230134 AGCAATTTGGACCACAAGCTTA 58.770 40.909 0.00 0.00 40.82 3.09
8477 9074 3.834231 AGCAATTTGGACCACAAGCTTAT 59.166 39.130 0.00 0.00 40.82 1.73
8478 9075 4.284234 AGCAATTTGGACCACAAGCTTATT 59.716 37.500 0.00 0.00 40.82 1.40
8479 9076 4.996758 GCAATTTGGACCACAAGCTTATTT 59.003 37.500 0.00 0.00 40.82 1.40
8480 9077 5.106987 GCAATTTGGACCACAAGCTTATTTG 60.107 40.000 0.00 0.00 40.82 2.32
8481 9078 4.599047 TTTGGACCACAAGCTTATTTGG 57.401 40.909 15.98 15.98 40.82 3.28
8482 9079 3.237268 TGGACCACAAGCTTATTTGGT 57.763 42.857 20.98 20.98 45.31 3.67
8483 9080 4.374689 TGGACCACAAGCTTATTTGGTA 57.625 40.909 20.91 8.73 42.60 3.25
8484 9081 4.929479 TGGACCACAAGCTTATTTGGTAT 58.071 39.130 20.91 5.49 42.60 2.73
8485 9082 5.329399 TGGACCACAAGCTTATTTGGTATT 58.671 37.500 20.91 4.90 42.60 1.89
8486 9083 5.184864 TGGACCACAAGCTTATTTGGTATTG 59.815 40.000 20.91 0.50 42.60 1.90
8487 9084 5.185056 GGACCACAAGCTTATTTGGTATTGT 59.815 40.000 20.91 1.10 42.60 2.71
8488 9085 6.376018 GGACCACAAGCTTATTTGGTATTGTA 59.624 38.462 20.91 0.00 42.60 2.41
8489 9086 7.094118 GGACCACAAGCTTATTTGGTATTGTAA 60.094 37.037 20.91 0.00 42.60 2.41
8490 9087 8.184304 ACCACAAGCTTATTTGGTATTGTAAA 57.816 30.769 19.96 0.00 40.69 2.01
8491 9088 8.811994 ACCACAAGCTTATTTGGTATTGTAAAT 58.188 29.630 19.96 0.00 40.69 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.905480 TGCGTTGTACATTATGCAGATAG 57.095 39.130 9.83 0.00 32.79 2.08
101 102 3.445450 TGTGCTTAGCAAACCTGAAAACA 59.555 39.130 9.05 0.00 41.47 2.83
110 111 2.357637 TCCACACTTGTGCTTAGCAAAC 59.642 45.455 9.05 0.00 44.34 2.93
170 171 3.967326 TGACCGTTGGATATTCTCTCCAT 59.033 43.478 0.00 0.00 42.26 3.41
328 330 4.284829 TCCAGATAACACAAGATGCACA 57.715 40.909 0.00 0.00 0.00 4.57
387 390 3.706373 GAGAGGAGGGGTGCGCAA 61.706 66.667 14.00 0.00 0.00 4.85
435 438 4.352298 TGAGAGATATGGAGCACCTAGAGA 59.648 45.833 0.71 0.00 37.04 3.10
439 442 3.576118 GCTTGAGAGATATGGAGCACCTA 59.424 47.826 0.71 0.00 37.04 3.08
450 453 0.175760 GTGCCACCGCTTGAGAGATA 59.824 55.000 0.00 0.00 35.36 1.98
464 467 0.473694 TGAGAAGAAGGGAGGTGCCA 60.474 55.000 0.00 0.00 38.95 4.92
473 476 4.019860 TGAAAGACCCAGATGAGAAGAAGG 60.020 45.833 0.00 0.00 0.00 3.46
481 484 3.074390 ACAACCATGAAAGACCCAGATGA 59.926 43.478 0.00 0.00 0.00 2.92
496 499 0.179032 TGTGAGGCAACGACAACCAT 60.179 50.000 0.00 0.00 46.39 3.55
499 502 0.163788 CGATGTGAGGCAACGACAAC 59.836 55.000 0.00 0.00 44.60 3.32
501 504 1.374125 CCGATGTGAGGCAACGACA 60.374 57.895 0.00 0.00 44.60 4.35
503 506 1.215382 CTCCGATGTGAGGCAACGA 59.785 57.895 0.00 0.00 44.60 3.85
506 509 0.391661 GCTTCTCCGATGTGAGGCAA 60.392 55.000 0.00 0.00 37.14 4.52
529 532 0.679505 TCTCCACGTCCAAAGACCAG 59.320 55.000 0.00 0.00 40.12 4.00
536 539 0.904865 AGCTCCATCTCCACGTCCAA 60.905 55.000 0.00 0.00 0.00 3.53
595 605 5.117592 ACGTATACAAGTCCGAAGAAAAACG 59.882 40.000 3.32 0.00 0.00 3.60
617 627 1.535437 GCGGGGTCAGATAACTGTACG 60.535 57.143 0.00 2.78 43.81 3.67
631 641 2.713863 TATCGGTTTATTTGCGGGGT 57.286 45.000 0.00 0.00 0.00 4.95
683 693 9.781834 TCTTTTTGTGTTGTATAAGACTTTGTG 57.218 29.630 0.00 0.00 31.75 3.33
731 741 3.264947 CGTTGATCTGCTCCAAGATTCA 58.735 45.455 0.00 0.00 37.03 2.57
741 751 0.546122 TTATGGGCCGTTGATCTGCT 59.454 50.000 2.17 0.00 0.00 4.24
782 792 3.055385 GGAGGTACAGGATTTACAGCACA 60.055 47.826 0.00 0.00 0.00 4.57
787 797 6.012858 ACAAATGAGGAGGTACAGGATTTACA 60.013 38.462 0.00 0.00 0.00 2.41
788 798 6.415573 ACAAATGAGGAGGTACAGGATTTAC 58.584 40.000 0.00 0.00 0.00 2.01
789 799 6.636454 ACAAATGAGGAGGTACAGGATTTA 57.364 37.500 0.00 0.00 0.00 1.40
790 800 5.520748 ACAAATGAGGAGGTACAGGATTT 57.479 39.130 0.00 0.00 0.00 2.17
791 801 5.520748 AACAAATGAGGAGGTACAGGATT 57.479 39.130 0.00 0.00 0.00 3.01
797 807 4.083484 CGGACAAAACAAATGAGGAGGTAC 60.083 45.833 0.00 0.00 0.00 3.34
799 809 2.884639 CGGACAAAACAAATGAGGAGGT 59.115 45.455 0.00 0.00 0.00 3.85
804 814 7.381948 TGATTGAATTCGGACAAAACAAATGAG 59.618 33.333 0.04 0.00 0.00 2.90
815 825 6.398234 TTTTCCTTTGATTGAATTCGGACA 57.602 33.333 0.04 0.00 0.00 4.02
864 876 4.023963 CGACTTCCCCTTTCTTTTTCAGTC 60.024 45.833 0.00 0.00 0.00 3.51
869 881 1.961394 GGCGACTTCCCCTTTCTTTTT 59.039 47.619 0.00 0.00 0.00 1.94
870 882 1.617322 GGCGACTTCCCCTTTCTTTT 58.383 50.000 0.00 0.00 0.00 2.27
917 929 2.333014 GAAGAAGAACAGAGCACTCGG 58.667 52.381 0.00 0.00 34.09 4.63
921 933 1.814793 GGGGAAGAAGAACAGAGCAC 58.185 55.000 0.00 0.00 0.00 4.40
941 953 0.606673 GTGGAGGAAAGTGCAGGGAC 60.607 60.000 0.00 0.00 0.00 4.46
1092 1104 1.377366 GGAGCCTCTCGATGTCGTCA 61.377 60.000 2.04 0.00 40.80 4.35
1187 1199 0.102120 CTTGAGGCGAGCGAGAGATT 59.898 55.000 0.00 0.00 0.00 2.40
1188 1200 1.732917 CTTGAGGCGAGCGAGAGAT 59.267 57.895 0.00 0.00 0.00 2.75
1210 1222 1.154093 CGTCGGCTTCGTAGAGCAA 60.154 57.895 9.61 0.00 38.43 3.91
1275 1287 2.350458 GGGGTTACGCGTACCTCCA 61.350 63.158 26.09 5.63 35.92 3.86
1320 1332 6.183361 TGAGGCATGTGATGAAATAATCCCTA 60.183 38.462 0.00 0.00 0.00 3.53
1325 1337 5.889853 AGTGTGAGGCATGTGATGAAATAAT 59.110 36.000 0.00 0.00 0.00 1.28
1326 1338 5.255687 AGTGTGAGGCATGTGATGAAATAA 58.744 37.500 0.00 0.00 0.00 1.40
1327 1339 4.847198 AGTGTGAGGCATGTGATGAAATA 58.153 39.130 0.00 0.00 0.00 1.40
1356 1368 6.712095 TGGTAAATGAGCATATGATCCAAGTC 59.288 38.462 17.90 6.32 0.00 3.01
1468 1481 8.626526 CCTATTTAGAGAAGACTGAAGGTAGAC 58.373 40.741 0.00 0.00 0.00 2.59
1590 1631 7.410174 TCCTTTTTCCACATGGTAGTATTGAT 58.590 34.615 0.00 0.00 36.34 2.57
1690 1733 0.674581 TGATGAGCAAGGCAGTTCGG 60.675 55.000 0.00 0.00 0.00 4.30
1780 1823 7.461182 TTGACCAGGTAGAACAATAATTTGG 57.539 36.000 0.00 0.00 37.15 3.28
1807 1850 5.662208 TCATATGCCCACTTTTCCAATGAAT 59.338 36.000 0.00 0.00 0.00 2.57
1819 1862 4.508551 TGACTTTGATCATATGCCCACT 57.491 40.909 0.00 0.00 0.00 4.00
1820 1863 5.581126 TTTGACTTTGATCATATGCCCAC 57.419 39.130 0.00 0.00 0.00 4.61
1821 1864 5.716228 AGTTTTGACTTTGATCATATGCCCA 59.284 36.000 0.00 0.00 0.00 5.36
1824 1867 9.195411 TCAAAAGTTTTGACTTTGATCATATGC 57.805 29.630 23.91 0.00 39.59 3.14
1931 1979 4.058817 GGAGAACACATTTTCACGACTCT 58.941 43.478 0.00 0.00 0.00 3.24
1971 2019 1.745489 GGTCACCGGCATGGAAGAC 60.745 63.158 0.00 8.24 42.00 3.01
1991 2039 2.980548 TCTAGTAGTTGTGTTGGGGGT 58.019 47.619 0.00 0.00 0.00 4.95
1996 2044 5.177696 GCACCTCTTTCTAGTAGTTGTGTTG 59.822 44.000 0.00 0.00 0.00 3.33
2018 2069 3.268603 CGTTCCTGCACACACGCA 61.269 61.111 0.00 0.00 40.32 5.24
2039 2090 5.192927 TGACCACATCAAACTTTCTTCTGT 58.807 37.500 0.00 0.00 33.02 3.41
2045 2096 8.511321 TGTACAATATGACCACATCAAACTTTC 58.489 33.333 0.00 0.00 41.93 2.62
2057 2108 8.923270 TCACTATTCATCTGTACAATATGACCA 58.077 33.333 16.37 7.17 29.64 4.02
2130 2181 6.884295 TGTTTAAGTACTGGGATCAATTGAGG 59.116 38.462 14.54 4.33 0.00 3.86
2131 2182 7.390440 TGTGTTTAAGTACTGGGATCAATTGAG 59.610 37.037 14.54 2.20 0.00 3.02
2136 2709 5.001232 GCTGTGTTTAAGTACTGGGATCAA 58.999 41.667 0.00 0.00 0.00 2.57
2161 2734 2.837291 GCACAAACACAGGGCCCA 60.837 61.111 27.56 0.00 0.00 5.36
2514 3089 3.893326 AAAAGGTGAATTAGCATGCCC 57.107 42.857 15.66 6.42 0.00 5.36
2581 3159 4.509616 CCCTCGATATCTCATCTACTCGT 58.490 47.826 0.34 0.00 0.00 4.18
2595 3173 0.188587 AGCATCACCTCCCCTCGATA 59.811 55.000 0.00 0.00 0.00 2.92
2622 3200 6.706270 CCAATTATTACCACCACTGCTACTAG 59.294 42.308 0.00 0.00 0.00 2.57
2624 3202 5.045140 ACCAATTATTACCACCACTGCTACT 60.045 40.000 0.00 0.00 0.00 2.57
2628 3206 3.380320 GGACCAATTATTACCACCACTGC 59.620 47.826 0.00 0.00 0.00 4.40
2638 3216 6.382570 CACCCCTTGATTTGGACCAATTATTA 59.617 38.462 7.99 0.00 0.00 0.98
2641 3219 4.093011 CACCCCTTGATTTGGACCAATTA 58.907 43.478 7.99 0.00 0.00 1.40
2644 3222 1.501170 TCACCCCTTGATTTGGACCAA 59.499 47.619 1.69 1.69 0.00 3.67
2667 3245 5.520288 CCGTCGTTTTCTTCTGTGATATCAT 59.480 40.000 9.02 0.00 0.00 2.45
2680 3258 2.353579 CACAGGTTTTCCGTCGTTTTCT 59.646 45.455 0.00 0.00 46.35 2.52
2687 3265 1.673920 TGCTTTCACAGGTTTTCCGTC 59.326 47.619 0.00 0.00 46.35 4.79
2695 3273 7.064490 CAGTGTTTAAATTTTGCTTTCACAGGT 59.936 33.333 0.00 0.00 0.00 4.00
2710 3288 9.646427 TTAACTGCTTTTTGACAGTGTTTAAAT 57.354 25.926 0.00 0.00 46.17 1.40
2796 3374 0.108585 GTCAGTTGCTCTGGGGTTCA 59.891 55.000 8.98 0.00 43.76 3.18
2879 3457 9.014297 CCAGAGGAAAACATATGTTAACTCTTT 57.986 33.333 28.72 18.08 38.86 2.52
2880 3458 8.383175 TCCAGAGGAAAACATATGTTAACTCTT 58.617 33.333 28.72 19.79 38.86 2.85
2881 3459 7.918076 TCCAGAGGAAAACATATGTTAACTCT 58.082 34.615 27.14 27.14 40.16 3.24
2882 3460 8.738645 ATCCAGAGGAAAACATATGTTAACTC 57.261 34.615 24.89 24.89 33.76 3.01
2883 3461 7.775561 GGATCCAGAGGAAAACATATGTTAACT 59.224 37.037 21.07 17.75 33.76 2.24
2884 3462 7.775561 AGGATCCAGAGGAAAACATATGTTAAC 59.224 37.037 21.07 16.46 33.76 2.01
2885 3463 7.872138 AGGATCCAGAGGAAAACATATGTTAA 58.128 34.615 21.07 0.47 33.76 2.01
2955 3533 9.793259 CAATAGTGGGTGGATTATATAAGTTGT 57.207 33.333 1.02 0.00 0.00 3.32
2956 3534 9.793259 ACAATAGTGGGTGGATTATATAAGTTG 57.207 33.333 1.02 0.00 0.00 3.16
2970 3548 7.113658 ACTACTAGAATCACAATAGTGGGTG 57.886 40.000 0.00 0.00 45.91 4.61
3209 3789 4.202253 TGCACTCTGAACACATACACTCTT 60.202 41.667 0.00 0.00 0.00 2.85
3247 3827 1.208293 TGCCCGTATGCATTCTGTACA 59.792 47.619 3.54 0.00 36.04 2.90
3532 4114 3.056891 GCCAAAGGTTTATGTTAGCTGCA 60.057 43.478 1.02 0.00 0.00 4.41
3594 4176 4.442192 CCTCTAGGATGTCTTGTAACTGCC 60.442 50.000 0.00 0.00 37.39 4.85
3991 4580 5.741011 TGGAACTCCATATGTACCTTCAAC 58.259 41.667 1.24 0.00 42.01 3.18
4046 4635 2.557555 TCATCCAGAGTGTCCCAGAT 57.442 50.000 0.00 0.00 0.00 2.90
4312 4901 1.847798 ATCCAGCTGCCAACGGGTTA 61.848 55.000 8.66 0.00 36.17 2.85
5299 5891 7.473735 TGTCATTTTACCAATGCAAGGAATA 57.526 32.000 14.81 0.00 0.00 1.75
5582 6174 3.634448 CCATTGTACCCAAATATCCGCAA 59.366 43.478 0.00 0.00 33.44 4.85
5743 6335 6.377996 ACATTGCTTCCATTACTTTCTGCATA 59.622 34.615 0.00 0.00 0.00 3.14
5834 6426 9.042450 TCTTAAACTAGAGTTCATATCCCACAA 57.958 33.333 0.00 0.00 37.25 3.33
6371 6963 7.086376 CCACACGAATGAATTCTGAGATTTTT 58.914 34.615 7.05 0.00 34.69 1.94
6386 6978 4.131649 TCCCTGTTATACCACACGAATG 57.868 45.455 0.00 0.00 0.00 2.67
6390 6982 3.259064 CACTTCCCTGTTATACCACACG 58.741 50.000 0.00 0.00 0.00 4.49
6391 6983 3.606687 CCACTTCCCTGTTATACCACAC 58.393 50.000 0.00 0.00 0.00 3.82
6420 7012 3.256833 TCGCATGTCGCAGCATCG 61.257 61.111 4.90 0.00 42.60 3.84
6648 7240 5.598005 TGGCAAAATGTTAGATAAGGGGATG 59.402 40.000 0.00 0.00 0.00 3.51
6688 7280 3.031736 CTCGAGGGAGGTAAATCCAGAA 58.968 50.000 3.91 0.00 41.52 3.02
6755 7347 4.544683 TGGCCATCATTTCCATCAATACA 58.455 39.130 0.00 0.00 0.00 2.29
6903 7496 7.387948 GCTGTAGAGACTCCAAACTTTTATTGA 59.612 37.037 0.00 0.00 0.00 2.57
6942 7535 2.360475 GCAACTCCTCCAGTGCCC 60.360 66.667 0.00 0.00 34.56 5.36
7011 7604 4.082026 GGGTGCTGAATAAACTCAAATGCT 60.082 41.667 0.00 0.00 0.00 3.79
7021 7614 3.307339 GCAAATTGGGGGTGCTGAATAAA 60.307 43.478 0.00 0.00 35.36 1.40
7228 7821 0.247736 GGGACGTGATGAGCAGAAGT 59.752 55.000 0.00 0.00 0.00 3.01
7307 7900 0.475632 TTCTTGAGGGAGGGAAGGCA 60.476 55.000 0.00 0.00 0.00 4.75
7640 8233 2.601763 GCAAGCTGCAGCAATAAATGAC 59.398 45.455 38.24 17.76 44.26 3.06
7768 8361 3.110447 TGCAAGGAAGAAAAATGCACC 57.890 42.857 0.00 0.00 41.67 5.01
7802 8396 5.313240 TCCATTTCTTATATTCCAGAGGGGG 59.687 44.000 0.00 0.00 37.22 5.40
7803 8397 6.454223 TCCATTTCTTATATTCCAGAGGGG 57.546 41.667 0.00 0.00 38.37 4.79
7804 8398 7.040132 GCTTTCCATTTCTTATATTCCAGAGGG 60.040 40.741 0.00 0.00 0.00 4.30
7805 8399 7.308229 CGCTTTCCATTTCTTATATTCCAGAGG 60.308 40.741 0.00 0.00 0.00 3.69
7831 8425 3.193479 CCATTTCTTAACTCCTGCCAACC 59.807 47.826 0.00 0.00 0.00 3.77
7886 8481 0.322546 AACCGACTGGAAGAATGCCC 60.323 55.000 0.00 0.00 39.21 5.36
7919 8514 6.874278 TCCTTTTGAGGTCATTAGATGAGA 57.126 37.500 0.00 0.00 40.53 3.27
7932 8527 8.255905 AGAAGCAAATTAATCATCCTTTTGAGG 58.744 33.333 0.00 0.00 30.69 3.86
7955 8550 1.112113 GATCCGCCTGTAGTCCAGAA 58.888 55.000 0.00 0.00 44.49 3.02
7986 8581 6.805271 CCAACTTGTGAATCAACATCAGAATC 59.195 38.462 0.00 0.00 30.78 2.52
8012 8607 2.935201 GTCTTGATGAGCTCCATGACAC 59.065 50.000 22.76 8.43 37.39 3.67
8053 8648 4.149046 GGATTGAACTATCGCGAGTGAATC 59.851 45.833 16.66 16.89 32.87 2.52
8055 8650 3.444916 GGATTGAACTATCGCGAGTGAA 58.555 45.455 16.66 5.40 0.00 3.18
8057 8652 1.781429 CGGATTGAACTATCGCGAGTG 59.219 52.381 16.66 12.31 0.00 3.51
8058 8653 1.269102 CCGGATTGAACTATCGCGAGT 60.269 52.381 16.66 4.80 0.00 4.18
8059 8654 1.001706 TCCGGATTGAACTATCGCGAG 60.002 52.381 16.66 4.02 0.00 5.03
8060 8655 1.026584 TCCGGATTGAACTATCGCGA 58.973 50.000 13.09 13.09 0.00 5.87
8061 8656 1.521423 GTTCCGGATTGAACTATCGCG 59.479 52.381 4.15 0.00 41.12 5.87
8088 8685 1.002430 GTTCACTGGGTGCATCTGAGA 59.998 52.381 0.00 0.00 32.98 3.27
8089 8686 1.271001 TGTTCACTGGGTGCATCTGAG 60.271 52.381 0.00 0.00 32.98 3.35
8090 8687 0.764271 TGTTCACTGGGTGCATCTGA 59.236 50.000 0.00 0.00 32.98 3.27
8123 8720 3.684693 GCACCTTGCACCACAATTT 57.315 47.368 0.00 0.00 44.26 1.82
8138 8735 4.077188 GTTCACGCGCAGGAGCAC 62.077 66.667 5.73 0.00 42.27 4.40
8139 8736 4.299547 AGTTCACGCGCAGGAGCA 62.300 61.111 5.73 0.00 42.27 4.26
8140 8737 3.482783 GAGTTCACGCGCAGGAGC 61.483 66.667 5.73 6.09 37.42 4.70
8141 8738 2.091112 CAGAGTTCACGCGCAGGAG 61.091 63.158 5.73 0.00 0.00 3.69
8142 8739 2.049156 CAGAGTTCACGCGCAGGA 60.049 61.111 5.73 0.00 0.00 3.86
8143 8740 3.782244 GCAGAGTTCACGCGCAGG 61.782 66.667 5.73 0.00 0.00 4.85
8144 8741 2.104770 TTTGCAGAGTTCACGCGCAG 62.105 55.000 5.73 2.42 33.48 5.18
8145 8742 1.506309 ATTTGCAGAGTTCACGCGCA 61.506 50.000 5.73 0.00 0.00 6.09
8146 8743 0.385974 AATTTGCAGAGTTCACGCGC 60.386 50.000 5.73 0.00 0.00 6.86
8147 8744 1.710249 CAAATTTGCAGAGTTCACGCG 59.290 47.619 3.53 3.53 0.00 6.01
8148 8745 2.468777 CACAAATTTGCAGAGTTCACGC 59.531 45.455 18.12 0.00 0.00 5.34
8149 8746 3.483196 CACACAAATTTGCAGAGTTCACG 59.517 43.478 18.12 0.00 0.00 4.35
8150 8747 4.671377 TCACACAAATTTGCAGAGTTCAC 58.329 39.130 18.12 0.00 0.00 3.18
8151 8748 4.979943 TCACACAAATTTGCAGAGTTCA 57.020 36.364 18.12 0.00 0.00 3.18
8152 8749 5.343249 ACTTCACACAAATTTGCAGAGTTC 58.657 37.500 18.12 0.00 0.00 3.01
8153 8750 5.329035 ACTTCACACAAATTTGCAGAGTT 57.671 34.783 18.12 0.00 0.00 3.01
8154 8751 4.989279 ACTTCACACAAATTTGCAGAGT 57.011 36.364 18.12 11.61 0.00 3.24
8155 8752 5.005971 CCAAACTTCACACAAATTTGCAGAG 59.994 40.000 18.12 9.71 0.00 3.35
8156 8753 4.869297 CCAAACTTCACACAAATTTGCAGA 59.131 37.500 18.12 10.41 0.00 4.26
8157 8754 4.869297 TCCAAACTTCACACAAATTTGCAG 59.131 37.500 18.12 13.09 0.00 4.41
8158 8755 4.629200 GTCCAAACTTCACACAAATTTGCA 59.371 37.500 18.12 0.00 0.00 4.08
8159 8756 4.629200 TGTCCAAACTTCACACAAATTTGC 59.371 37.500 18.12 0.00 0.00 3.68
8160 8757 6.907206 ATGTCCAAACTTCACACAAATTTG 57.093 33.333 16.67 16.67 0.00 2.32
8161 8758 6.255453 CGAATGTCCAAACTTCACACAAATTT 59.745 34.615 0.00 0.00 0.00 1.82
8162 8759 5.748152 CGAATGTCCAAACTTCACACAAATT 59.252 36.000 0.00 0.00 0.00 1.82
8163 8760 5.067153 TCGAATGTCCAAACTTCACACAAAT 59.933 36.000 0.00 0.00 0.00 2.32
8164 8761 4.396478 TCGAATGTCCAAACTTCACACAAA 59.604 37.500 0.00 0.00 0.00 2.83
8165 8762 3.942115 TCGAATGTCCAAACTTCACACAA 59.058 39.130 0.00 0.00 0.00 3.33
8166 8763 3.536570 TCGAATGTCCAAACTTCACACA 58.463 40.909 0.00 0.00 0.00 3.72
8167 8764 3.058914 CCTCGAATGTCCAAACTTCACAC 60.059 47.826 0.00 0.00 0.00 3.82
8168 8765 3.138304 CCTCGAATGTCCAAACTTCACA 58.862 45.455 0.00 0.00 0.00 3.58
8169 8766 3.399330 TCCTCGAATGTCCAAACTTCAC 58.601 45.455 0.00 0.00 0.00 3.18
8170 8767 3.664107 CTCCTCGAATGTCCAAACTTCA 58.336 45.455 0.00 0.00 0.00 3.02
8171 8768 2.416893 GCTCCTCGAATGTCCAAACTTC 59.583 50.000 0.00 0.00 0.00 3.01
8172 8769 2.039084 AGCTCCTCGAATGTCCAAACTT 59.961 45.455 0.00 0.00 0.00 2.66
8173 8770 1.625818 AGCTCCTCGAATGTCCAAACT 59.374 47.619 0.00 0.00 0.00 2.66
8174 8771 2.003301 GAGCTCCTCGAATGTCCAAAC 58.997 52.381 0.87 0.00 0.00 2.93
8175 8772 1.623311 TGAGCTCCTCGAATGTCCAAA 59.377 47.619 12.15 0.00 32.35 3.28
8176 8773 1.266178 TGAGCTCCTCGAATGTCCAA 58.734 50.000 12.15 0.00 32.35 3.53
8177 8774 1.137675 CATGAGCTCCTCGAATGTCCA 59.862 52.381 12.15 0.00 32.35 4.02
8178 8775 1.539929 CCATGAGCTCCTCGAATGTCC 60.540 57.143 12.15 0.00 32.35 4.02
8179 8776 1.863267 CCATGAGCTCCTCGAATGTC 58.137 55.000 12.15 0.00 32.35 3.06
8180 8777 0.179062 GCCATGAGCTCCTCGAATGT 60.179 55.000 12.15 0.00 38.99 2.71
8181 8778 0.179065 TGCCATGAGCTCCTCGAATG 60.179 55.000 12.15 7.62 44.23 2.67
8182 8779 0.543277 TTGCCATGAGCTCCTCGAAT 59.457 50.000 12.15 0.00 44.23 3.34
8183 8780 0.324614 TTTGCCATGAGCTCCTCGAA 59.675 50.000 12.15 1.03 44.23 3.71
8184 8781 0.324614 TTTTGCCATGAGCTCCTCGA 59.675 50.000 12.15 0.00 44.23 4.04
8185 8782 1.167851 TTTTTGCCATGAGCTCCTCG 58.832 50.000 12.15 0.00 44.23 4.63
8201 8798 6.060788 TGTTCATGCCTAATTTTGCCTTTTT 58.939 32.000 0.00 0.00 0.00 1.94
8202 8799 5.619220 TGTTCATGCCTAATTTTGCCTTTT 58.381 33.333 0.00 0.00 0.00 2.27
8203 8800 5.221702 ACTGTTCATGCCTAATTTTGCCTTT 60.222 36.000 0.00 0.00 0.00 3.11
8204 8801 4.284234 ACTGTTCATGCCTAATTTTGCCTT 59.716 37.500 0.00 0.00 0.00 4.35
8205 8802 3.834231 ACTGTTCATGCCTAATTTTGCCT 59.166 39.130 0.00 0.00 0.00 4.75
8206 8803 3.928375 CACTGTTCATGCCTAATTTTGCC 59.072 43.478 0.00 0.00 0.00 4.52
8207 8804 3.368843 GCACTGTTCATGCCTAATTTTGC 59.631 43.478 0.00 0.00 37.08 3.68
8208 8805 3.609373 CGCACTGTTCATGCCTAATTTTG 59.391 43.478 0.00 0.00 40.09 2.44
8209 8806 3.367292 CCGCACTGTTCATGCCTAATTTT 60.367 43.478 0.00 0.00 40.09 1.82
8210 8807 2.164219 CCGCACTGTTCATGCCTAATTT 59.836 45.455 0.00 0.00 40.09 1.82
8211 8808 1.745087 CCGCACTGTTCATGCCTAATT 59.255 47.619 0.00 0.00 40.09 1.40
8212 8809 1.340017 ACCGCACTGTTCATGCCTAAT 60.340 47.619 0.00 0.00 40.09 1.73
8213 8810 0.036164 ACCGCACTGTTCATGCCTAA 59.964 50.000 0.00 0.00 40.09 2.69
8214 8811 0.036164 AACCGCACTGTTCATGCCTA 59.964 50.000 0.00 0.00 40.09 3.93
8215 8812 0.823356 AAACCGCACTGTTCATGCCT 60.823 50.000 0.00 0.00 40.09 4.75
8216 8813 0.878416 TAAACCGCACTGTTCATGCC 59.122 50.000 0.00 0.00 40.09 4.40
8217 8814 2.697431 TTAAACCGCACTGTTCATGC 57.303 45.000 0.00 0.00 39.81 4.06
8218 8815 5.277825 TCTTTTTAAACCGCACTGTTCATG 58.722 37.500 0.00 0.00 0.00 3.07
8219 8816 5.508200 TCTTTTTAAACCGCACTGTTCAT 57.492 34.783 0.00 0.00 0.00 2.57
8220 8817 4.966965 TCTTTTTAAACCGCACTGTTCA 57.033 36.364 0.00 0.00 0.00 3.18
8221 8818 6.695713 AGATTTCTTTTTAAACCGCACTGTTC 59.304 34.615 0.00 0.00 0.00 3.18
8222 8819 6.569780 AGATTTCTTTTTAAACCGCACTGTT 58.430 32.000 0.00 0.00 0.00 3.16
8223 8820 6.144078 AGATTTCTTTTTAAACCGCACTGT 57.856 33.333 0.00 0.00 0.00 3.55
8224 8821 6.142320 GTGAGATTTCTTTTTAAACCGCACTG 59.858 38.462 0.00 0.00 0.00 3.66
8225 8822 6.183360 TGTGAGATTTCTTTTTAAACCGCACT 60.183 34.615 0.00 0.00 0.00 4.40
8226 8823 5.974751 TGTGAGATTTCTTTTTAAACCGCAC 59.025 36.000 0.00 0.00 0.00 5.34
8227 8824 5.974751 GTGTGAGATTTCTTTTTAAACCGCA 59.025 36.000 0.00 0.00 0.00 5.69
8228 8825 5.401376 GGTGTGAGATTTCTTTTTAAACCGC 59.599 40.000 0.00 0.00 0.00 5.68
8229 8826 5.918576 GGGTGTGAGATTTCTTTTTAAACCG 59.081 40.000 0.00 0.00 0.00 4.44
8230 8827 6.923508 CAGGGTGTGAGATTTCTTTTTAAACC 59.076 38.462 0.00 0.00 0.00 3.27
8231 8828 7.712797 TCAGGGTGTGAGATTTCTTTTTAAAC 58.287 34.615 0.00 0.00 0.00 2.01
8232 8829 7.889873 TCAGGGTGTGAGATTTCTTTTTAAA 57.110 32.000 0.00 0.00 0.00 1.52
8233 8830 7.889873 TTCAGGGTGTGAGATTTCTTTTTAA 57.110 32.000 0.00 0.00 36.21 1.52
8234 8831 7.889873 TTTCAGGGTGTGAGATTTCTTTTTA 57.110 32.000 0.00 0.00 36.21 1.52
8235 8832 6.790232 TTTCAGGGTGTGAGATTTCTTTTT 57.210 33.333 0.00 0.00 36.21 1.94
8236 8833 6.983906 ATTTCAGGGTGTGAGATTTCTTTT 57.016 33.333 0.00 0.00 36.21 2.27
8237 8834 6.983906 AATTTCAGGGTGTGAGATTTCTTT 57.016 33.333 0.00 0.00 36.77 2.52
8238 8835 6.324770 ACAAATTTCAGGGTGTGAGATTTCTT 59.675 34.615 1.63 0.00 43.27 2.52
8239 8836 5.835280 ACAAATTTCAGGGTGTGAGATTTCT 59.165 36.000 1.63 0.00 43.27 2.52
8240 8837 6.015940 AGACAAATTTCAGGGTGTGAGATTTC 60.016 38.462 1.63 0.00 43.27 2.17
8241 8838 5.835280 AGACAAATTTCAGGGTGTGAGATTT 59.165 36.000 0.00 0.00 46.10 2.17
8242 8839 5.388654 AGACAAATTTCAGGGTGTGAGATT 58.611 37.500 0.00 0.00 40.81 2.40
8243 8840 4.990526 AGACAAATTTCAGGGTGTGAGAT 58.009 39.130 0.00 0.00 36.21 2.75
8244 8841 4.437682 AGACAAATTTCAGGGTGTGAGA 57.562 40.909 0.00 0.00 36.21 3.27
8245 8842 5.520376 AAAGACAAATTTCAGGGTGTGAG 57.480 39.130 0.00 0.00 36.21 3.51
8246 8843 5.930837 AAAAGACAAATTTCAGGGTGTGA 57.069 34.783 0.00 0.00 0.00 3.58
8266 8863 7.230849 ACATTCAAGTAGATCATGGCAAAAA 57.769 32.000 0.00 0.00 0.00 1.94
8267 8864 6.127647 GGACATTCAAGTAGATCATGGCAAAA 60.128 38.462 0.00 0.00 26.04 2.44
8268 8865 5.357878 GGACATTCAAGTAGATCATGGCAAA 59.642 40.000 0.00 0.00 26.04 3.68
8269 8866 4.883585 GGACATTCAAGTAGATCATGGCAA 59.116 41.667 0.00 0.00 26.04 4.52
8270 8867 4.080413 TGGACATTCAAGTAGATCATGGCA 60.080 41.667 0.00 0.00 26.04 4.92
8271 8868 4.454678 TGGACATTCAAGTAGATCATGGC 58.545 43.478 0.00 0.00 0.00 4.40
8272 8869 6.600822 AGTTTGGACATTCAAGTAGATCATGG 59.399 38.462 0.00 0.00 0.00 3.66
8273 8870 7.621428 AGTTTGGACATTCAAGTAGATCATG 57.379 36.000 0.00 0.00 0.00 3.07
8274 8871 8.641498 AAAGTTTGGACATTCAAGTAGATCAT 57.359 30.769 0.00 0.00 0.00 2.45
8275 8872 8.999431 GTAAAGTTTGGACATTCAAGTAGATCA 58.001 33.333 0.00 0.00 0.00 2.92
8276 8873 8.999431 TGTAAAGTTTGGACATTCAAGTAGATC 58.001 33.333 0.00 0.00 0.00 2.75
8277 8874 8.918202 TGTAAAGTTTGGACATTCAAGTAGAT 57.082 30.769 0.00 0.00 0.00 1.98
8278 8875 8.740123 TTGTAAAGTTTGGACATTCAAGTAGA 57.260 30.769 0.00 0.00 0.00 2.59
8279 8876 9.796120 TTTTGTAAAGTTTGGACATTCAAGTAG 57.204 29.630 0.00 0.00 0.00 2.57
8281 8878 9.665719 AATTTTGTAAAGTTTGGACATTCAAGT 57.334 25.926 0.00 0.00 0.00 3.16
8285 8882 9.220635 GCAAAATTTTGTAAAGTTTGGACATTC 57.779 29.630 27.13 5.40 40.24 2.67
8286 8883 8.734386 TGCAAAATTTTGTAAAGTTTGGACATT 58.266 25.926 27.13 0.00 40.24 2.71
8287 8884 8.180920 GTGCAAAATTTTGTAAAGTTTGGACAT 58.819 29.630 28.12 3.11 40.93 3.06
8288 8885 7.522374 GTGCAAAATTTTGTAAAGTTTGGACA 58.478 30.769 28.12 16.48 40.93 4.02
8289 8886 6.680758 CGTGCAAAATTTTGTAAAGTTTGGAC 59.319 34.615 27.13 25.61 39.63 4.02
8290 8887 6.183360 CCGTGCAAAATTTTGTAAAGTTTGGA 60.183 34.615 27.13 16.56 40.24 3.53
8291 8888 5.962423 CCGTGCAAAATTTTGTAAAGTTTGG 59.038 36.000 27.13 15.84 40.24 3.28
8292 8889 6.766084 TCCGTGCAAAATTTTGTAAAGTTTG 58.234 32.000 27.13 16.32 40.24 2.93
8293 8890 6.969828 TCCGTGCAAAATTTTGTAAAGTTT 57.030 29.167 27.13 0.00 40.24 2.66
8294 8891 6.969828 TTCCGTGCAAAATTTTGTAAAGTT 57.030 29.167 27.13 0.00 40.24 2.66
8295 8892 7.278868 TGAATTCCGTGCAAAATTTTGTAAAGT 59.721 29.630 27.13 15.85 40.24 2.66
8296 8893 7.582319 GTGAATTCCGTGCAAAATTTTGTAAAG 59.418 33.333 27.13 20.19 40.24 1.85
8297 8894 7.402640 GTGAATTCCGTGCAAAATTTTGTAAA 58.597 30.769 27.13 16.78 40.24 2.01
8298 8895 6.291849 CGTGAATTCCGTGCAAAATTTTGTAA 60.292 34.615 27.13 15.99 40.24 2.41
8299 8896 5.174035 CGTGAATTCCGTGCAAAATTTTGTA 59.826 36.000 27.13 22.18 40.24 2.41
8300 8897 4.026145 CGTGAATTCCGTGCAAAATTTTGT 60.026 37.500 27.13 9.04 40.24 2.83
8301 8898 4.026145 ACGTGAATTCCGTGCAAAATTTTG 60.026 37.500 23.74 23.74 41.03 2.44
8302 8899 4.116238 ACGTGAATTCCGTGCAAAATTTT 58.884 34.783 17.47 0.00 37.12 1.82
8303 8900 3.712187 ACGTGAATTCCGTGCAAAATTT 58.288 36.364 17.47 0.00 37.12 1.82
8304 8901 3.363341 ACGTGAATTCCGTGCAAAATT 57.637 38.095 17.47 0.00 37.12 1.82
8305 8902 4.695217 ATACGTGAATTCCGTGCAAAAT 57.305 36.364 23.57 11.60 39.22 1.82
8306 8903 4.093703 CCTATACGTGAATTCCGTGCAAAA 59.906 41.667 23.57 10.22 39.22 2.44
8307 8904 3.619483 CCTATACGTGAATTCCGTGCAAA 59.381 43.478 23.57 10.50 39.22 3.68
8308 8905 3.119065 TCCTATACGTGAATTCCGTGCAA 60.119 43.478 23.57 10.77 39.22 4.08
8309 8906 2.427812 TCCTATACGTGAATTCCGTGCA 59.572 45.455 23.57 14.07 39.22 4.57
8310 8907 3.050619 CTCCTATACGTGAATTCCGTGC 58.949 50.000 23.57 4.83 39.22 5.34
8311 8908 3.050619 GCTCCTATACGTGAATTCCGTG 58.949 50.000 23.57 12.33 39.22 4.94
8312 8909 2.691526 TGCTCCTATACGTGAATTCCGT 59.308 45.455 20.53 20.53 42.06 4.69
8313 8910 3.364889 TGCTCCTATACGTGAATTCCG 57.635 47.619 12.81 12.81 0.00 4.30
8314 8911 5.140747 AGATGCTCCTATACGTGAATTCC 57.859 43.478 2.27 0.00 0.00 3.01
8315 8912 5.107298 GCAAGATGCTCCTATACGTGAATTC 60.107 44.000 0.00 0.00 40.96 2.17
8316 8913 4.752101 GCAAGATGCTCCTATACGTGAATT 59.248 41.667 0.00 0.00 40.96 2.17
8317 8914 4.202253 TGCAAGATGCTCCTATACGTGAAT 60.202 41.667 0.00 0.00 45.31 2.57
8318 8915 3.132111 TGCAAGATGCTCCTATACGTGAA 59.868 43.478 0.00 0.00 45.31 3.18
8319 8916 2.693074 TGCAAGATGCTCCTATACGTGA 59.307 45.455 0.00 0.00 45.31 4.35
8320 8917 2.797156 GTGCAAGATGCTCCTATACGTG 59.203 50.000 0.00 0.00 45.31 4.49
8321 8918 3.099267 GTGCAAGATGCTCCTATACGT 57.901 47.619 3.78 0.00 45.31 3.57
8329 8926 3.308438 AAAATGTGGTGCAAGATGCTC 57.692 42.857 3.78 0.00 45.31 4.26
8330 8927 3.756933 AAAAATGTGGTGCAAGATGCT 57.243 38.095 3.78 0.00 45.31 3.79
8374 8971 7.992608 GCCCAGGGATGAACAATAAAATAAAAT 59.007 33.333 10.89 0.00 0.00 1.82
8375 8972 7.181845 AGCCCAGGGATGAACAATAAAATAAAA 59.818 33.333 10.89 0.00 0.00 1.52
8376 8973 6.671779 AGCCCAGGGATGAACAATAAAATAAA 59.328 34.615 10.89 0.00 0.00 1.40
8377 8974 6.201591 AGCCCAGGGATGAACAATAAAATAA 58.798 36.000 10.89 0.00 0.00 1.40
8378 8975 5.776358 AGCCCAGGGATGAACAATAAAATA 58.224 37.500 10.89 0.00 0.00 1.40
8379 8976 4.623863 AGCCCAGGGATGAACAATAAAAT 58.376 39.130 10.89 0.00 0.00 1.82
8380 8977 4.023291 GAGCCCAGGGATGAACAATAAAA 58.977 43.478 10.89 0.00 0.00 1.52
8381 8978 3.011144 TGAGCCCAGGGATGAACAATAAA 59.989 43.478 10.89 0.00 0.00 1.40
8382 8979 2.580322 TGAGCCCAGGGATGAACAATAA 59.420 45.455 10.89 0.00 0.00 1.40
8383 8980 2.204463 TGAGCCCAGGGATGAACAATA 58.796 47.619 10.89 0.00 0.00 1.90
8384 8981 1.002069 TGAGCCCAGGGATGAACAAT 58.998 50.000 10.89 0.00 0.00 2.71
8385 8982 1.002069 ATGAGCCCAGGGATGAACAA 58.998 50.000 10.89 0.00 0.00 2.83
8386 8983 0.548031 GATGAGCCCAGGGATGAACA 59.452 55.000 10.89 0.00 0.00 3.18
8387 8984 0.842635 AGATGAGCCCAGGGATGAAC 59.157 55.000 10.89 0.00 0.00 3.18
8388 8985 2.494888 TAGATGAGCCCAGGGATGAA 57.505 50.000 10.89 0.00 0.00 2.57
8389 8986 2.090550 TCTTAGATGAGCCCAGGGATGA 60.091 50.000 10.89 0.00 0.00 2.92
8390 8987 2.038295 GTCTTAGATGAGCCCAGGGATG 59.962 54.545 10.89 0.00 0.00 3.51
8391 8988 2.334023 GTCTTAGATGAGCCCAGGGAT 58.666 52.381 10.89 0.63 0.00 3.85
8392 8989 1.692762 GGTCTTAGATGAGCCCAGGGA 60.693 57.143 10.89 0.00 0.00 4.20
8393 8990 0.761802 GGTCTTAGATGAGCCCAGGG 59.238 60.000 0.00 0.00 0.00 4.45
8394 8991 0.390860 CGGTCTTAGATGAGCCCAGG 59.609 60.000 0.00 0.00 0.00 4.45
8395 8992 0.390860 CCGGTCTTAGATGAGCCCAG 59.609 60.000 0.00 0.00 0.00 4.45
8396 8993 1.048724 CCCGGTCTTAGATGAGCCCA 61.049 60.000 0.00 0.00 0.00 5.36
8397 8994 1.049289 ACCCGGTCTTAGATGAGCCC 61.049 60.000 0.00 0.00 0.00 5.19
8398 8995 0.831307 AACCCGGTCTTAGATGAGCC 59.169 55.000 0.00 0.00 0.00 4.70
8399 8996 1.202545 GGAACCCGGTCTTAGATGAGC 60.203 57.143 0.00 0.00 0.00 4.26
8400 8997 2.108168 TGGAACCCGGTCTTAGATGAG 58.892 52.381 0.00 0.00 0.00 2.90
8401 8998 2.241281 TGGAACCCGGTCTTAGATGA 57.759 50.000 0.00 0.00 0.00 2.92
8402 8999 3.343941 TTTGGAACCCGGTCTTAGATG 57.656 47.619 0.00 0.00 0.00 2.90
8403 9000 3.682696 GTTTTGGAACCCGGTCTTAGAT 58.317 45.455 0.00 0.00 0.00 1.98
8404 9001 2.548493 CGTTTTGGAACCCGGTCTTAGA 60.548 50.000 0.00 0.00 31.93 2.10
8405 9002 1.802365 CGTTTTGGAACCCGGTCTTAG 59.198 52.381 0.00 0.00 31.93 2.18
8406 9003 1.881591 CGTTTTGGAACCCGGTCTTA 58.118 50.000 0.00 0.00 31.93 2.10
8407 9004 1.449726 GCGTTTTGGAACCCGGTCTT 61.450 55.000 0.00 0.00 31.93 3.01
8408 9005 1.895231 GCGTTTTGGAACCCGGTCT 60.895 57.895 0.00 0.00 31.93 3.85
8409 9006 2.640989 GCGTTTTGGAACCCGGTC 59.359 61.111 0.00 0.00 31.93 4.79
8410 9007 2.908428 GGCGTTTTGGAACCCGGT 60.908 61.111 0.00 0.00 31.93 5.28
8411 9008 4.032987 CGGCGTTTTGGAACCCGG 62.033 66.667 0.00 0.00 41.66 5.73
8412 9009 4.693525 GCGGCGTTTTGGAACCCG 62.694 66.667 9.37 11.98 44.91 5.28
8413 9010 4.693525 CGCGGCGTTTTGGAACCC 62.694 66.667 15.36 0.00 31.93 4.11
8414 9011 3.867226 GACGCGGCGTTTTGGAACC 62.867 63.158 29.98 10.18 41.37 3.62
8415 9012 2.426261 GACGCGGCGTTTTGGAAC 60.426 61.111 29.98 10.97 41.37 3.62
8416 9013 3.652000 GGACGCGGCGTTTTGGAA 61.652 61.111 29.98 0.00 41.37 3.53
8417 9014 4.612412 AGGACGCGGCGTTTTGGA 62.612 61.111 29.98 0.00 41.37 3.53
8418 9015 3.588891 GAAGGACGCGGCGTTTTGG 62.589 63.158 29.98 0.00 41.37 3.28
8419 9016 2.127383 GAAGGACGCGGCGTTTTG 60.127 61.111 29.98 0.00 41.37 2.44
8420 9017 2.589442 TGAAGGACGCGGCGTTTT 60.589 55.556 29.98 24.64 41.37 2.43
8421 9018 3.343421 GTGAAGGACGCGGCGTTT 61.343 61.111 29.98 20.48 41.37 3.60
8422 9019 4.295119 AGTGAAGGACGCGGCGTT 62.295 61.111 29.98 21.52 41.37 4.84
8423 9020 4.719369 GAGTGAAGGACGCGGCGT 62.719 66.667 29.85 29.85 45.10 5.68
8424 9021 4.717629 TGAGTGAAGGACGCGGCG 62.718 66.667 22.36 22.36 0.00 6.46
8425 9022 2.811317 CTGAGTGAAGGACGCGGC 60.811 66.667 12.47 7.53 0.00 6.53
8426 9023 2.811317 GCTGAGTGAAGGACGCGG 60.811 66.667 12.47 0.00 34.01 6.46
8427 9024 2.049156 TGCTGAGTGAAGGACGCG 60.049 61.111 3.53 3.53 0.00 6.01
8428 9025 2.386660 GCTGCTGAGTGAAGGACGC 61.387 63.158 0.00 0.00 0.00 5.19
8429 9026 0.528017 TAGCTGCTGAGTGAAGGACG 59.472 55.000 13.43 0.00 0.00 4.79
8430 9027 1.273606 TGTAGCTGCTGAGTGAAGGAC 59.726 52.381 13.43 0.00 0.00 3.85
8431 9028 1.547820 CTGTAGCTGCTGAGTGAAGGA 59.452 52.381 13.43 0.00 0.00 3.36
8432 9029 1.274728 ACTGTAGCTGCTGAGTGAAGG 59.725 52.381 13.43 0.00 0.00 3.46
8433 9030 2.739885 ACTGTAGCTGCTGAGTGAAG 57.260 50.000 13.43 3.30 0.00 3.02
8434 9031 4.560128 CTTTACTGTAGCTGCTGAGTGAA 58.440 43.478 20.33 17.70 0.00 3.18
8435 9032 3.615110 GCTTTACTGTAGCTGCTGAGTGA 60.615 47.826 20.33 12.87 35.74 3.41
8436 9033 2.670414 GCTTTACTGTAGCTGCTGAGTG 59.330 50.000 20.33 9.48 35.74 3.51
8437 9034 2.300152 TGCTTTACTGTAGCTGCTGAGT 59.700 45.455 13.43 15.70 39.38 3.41
8438 9035 2.964740 TGCTTTACTGTAGCTGCTGAG 58.035 47.619 13.43 10.49 39.38 3.35
8439 9036 3.401033 TTGCTTTACTGTAGCTGCTGA 57.599 42.857 13.43 0.00 39.38 4.26
8440 9037 4.691860 AATTGCTTTACTGTAGCTGCTG 57.308 40.909 13.43 7.14 39.38 4.41
8441 9038 4.082571 CCAAATTGCTTTACTGTAGCTGCT 60.083 41.667 7.57 7.57 39.38 4.24
8442 9039 4.082787 TCCAAATTGCTTTACTGTAGCTGC 60.083 41.667 0.00 0.00 39.38 5.25
8443 9040 5.393962 GTCCAAATTGCTTTACTGTAGCTG 58.606 41.667 0.00 0.00 39.38 4.24
8444 9041 4.459337 GGTCCAAATTGCTTTACTGTAGCT 59.541 41.667 4.38 0.00 39.38 3.32
8445 9042 4.217550 TGGTCCAAATTGCTTTACTGTAGC 59.782 41.667 0.00 0.00 39.10 3.58
8446 9043 5.240623 TGTGGTCCAAATTGCTTTACTGTAG 59.759 40.000 0.00 0.00 0.00 2.74
8447 9044 5.133941 TGTGGTCCAAATTGCTTTACTGTA 58.866 37.500 0.00 0.00 0.00 2.74
8448 9045 3.957497 TGTGGTCCAAATTGCTTTACTGT 59.043 39.130 0.00 0.00 0.00 3.55
8449 9046 4.582701 TGTGGTCCAAATTGCTTTACTG 57.417 40.909 0.00 0.00 0.00 2.74
8450 9047 4.501400 GCTTGTGGTCCAAATTGCTTTACT 60.501 41.667 0.00 0.00 31.20 2.24
8451 9048 3.740832 GCTTGTGGTCCAAATTGCTTTAC 59.259 43.478 0.00 0.00 31.20 2.01
8452 9049 3.640967 AGCTTGTGGTCCAAATTGCTTTA 59.359 39.130 0.00 0.00 30.35 1.85
8453 9050 2.435437 AGCTTGTGGTCCAAATTGCTTT 59.565 40.909 0.00 0.00 30.35 3.51
8454 9051 2.041701 AGCTTGTGGTCCAAATTGCTT 58.958 42.857 0.00 0.00 30.35 3.91
8455 9052 1.708341 AGCTTGTGGTCCAAATTGCT 58.292 45.000 0.00 0.00 31.20 3.91
8456 9053 2.531522 AAGCTTGTGGTCCAAATTGC 57.468 45.000 0.00 0.00 31.20 3.56
8457 9054 5.409214 CCAAATAAGCTTGTGGTCCAAATTG 59.591 40.000 9.86 1.24 31.20 2.32
8458 9055 5.071653 ACCAAATAAGCTTGTGGTCCAAATT 59.928 36.000 19.93 3.16 40.38 1.82
8459 9056 4.592778 ACCAAATAAGCTTGTGGTCCAAAT 59.407 37.500 19.93 3.11 40.38 2.32
8460 9057 3.964031 ACCAAATAAGCTTGTGGTCCAAA 59.036 39.130 19.93 0.00 40.38 3.28
8461 9058 3.571590 ACCAAATAAGCTTGTGGTCCAA 58.428 40.909 19.93 0.00 40.38 3.53
8462 9059 3.237268 ACCAAATAAGCTTGTGGTCCA 57.763 42.857 19.93 0.00 40.38 4.02
8463 9060 5.185056 ACAATACCAAATAAGCTTGTGGTCC 59.815 40.000 25.76 0.00 43.34 4.46
8464 9061 6.267496 ACAATACCAAATAAGCTTGTGGTC 57.733 37.500 25.76 0.00 43.34 4.02
8465 9062 7.768807 TTACAATACCAAATAAGCTTGTGGT 57.231 32.000 25.47 25.47 46.12 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.