Multiple sequence alignment - TraesCS2A01G465400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G465400 chr2A 100.000 4113 0 0 1 4113 710270677 710266565 0.000000e+00 7596.0
1 TraesCS2A01G465400 chr2A 84.884 172 17 6 866 1028 710278222 710278051 9.150000e-37 165.0
2 TraesCS2A01G465400 chr2B 91.876 2831 165 20 872 3667 683176381 683173581 0.000000e+00 3893.0
3 TraesCS2A01G465400 chr2B 96.875 256 8 0 3857 4112 79626974 79627229 2.940000e-116 429.0
4 TraesCS2A01G465400 chr2B 82.552 384 47 13 21 392 683302538 683302163 1.840000e-83 320.0
5 TraesCS2A01G465400 chr2B 84.273 337 40 9 1 326 683261876 683261542 2.390000e-82 316.0
6 TraesCS2A01G465400 chr2B 89.899 99 3 5 403 497 495355936 495356031 2.010000e-23 121.0
7 TraesCS2A01G465400 chr2B 100.000 30 0 0 2941 2970 683173541 683173570 5.740000e-04 56.5
8 TraesCS2A01G465400 chr2D 89.733 2396 145 30 21 2369 571543509 571541168 0.000000e+00 2968.0
9 TraesCS2A01G465400 chr2D 91.586 1438 87 10 2445 3856 571541173 571539744 0.000000e+00 1954.0
10 TraesCS2A01G465400 chr2D 81.972 355 54 3 61 405 571615455 571615101 4.020000e-75 292.0
11 TraesCS2A01G465400 chr2D 87.850 214 17 5 866 1071 571675235 571675023 4.110000e-60 243.0
12 TraesCS2A01G465400 chr2D 92.308 117 6 3 517 632 648660698 648660812 3.290000e-36 163.0
13 TraesCS2A01G465400 chr4B 97.297 259 7 0 3855 4113 666798949 666799207 1.360000e-119 440.0
14 TraesCS2A01G465400 chr7B 95.094 265 12 1 3849 4113 640786208 640786471 2.290000e-112 416.0
15 TraesCS2A01G465400 chr5D 94.595 259 11 2 3856 4113 458927717 458927461 8.280000e-107 398.0
16 TraesCS2A01G465400 chr3A 93.725 255 15 1 3859 4113 152654665 152654412 8.340000e-102 381.0
17 TraesCS2A01G465400 chr3A 88.696 115 2 4 410 513 692572419 692572305 3.340000e-26 130.0
18 TraesCS2A01G465400 chr3B 91.818 220 16 1 3896 4113 672136396 672136177 5.170000e-79 305.0
19 TraesCS2A01G465400 chr3D 86.705 173 18 3 2979 3149 250940545 250940376 1.950000e-43 187.0
20 TraesCS2A01G465400 chr3D 89.831 118 6 5 398 510 107088961 107089077 3.310000e-31 147.0
21 TraesCS2A01G465400 chr1D 94.643 112 6 0 3915 4026 482351791 482351902 1.520000e-39 174.0
22 TraesCS2A01G465400 chr1D 92.308 117 6 3 517 632 180355627 180355741 3.290000e-36 163.0
23 TraesCS2A01G465400 chr1D 92.308 117 6 3 517 632 180356129 180356243 3.290000e-36 163.0
24 TraesCS2A01G465400 chr4D 92.373 118 6 3 517 632 4108135 4108251 9.150000e-37 165.0
25 TraesCS2A01G465400 chr4D 90.625 96 7 2 416 510 454326012 454326106 4.320000e-25 126.0
26 TraesCS2A01G465400 chrUn 92.308 117 6 3 517 632 445362766 445362652 3.290000e-36 163.0
27 TraesCS2A01G465400 chrUn 92.308 117 6 3 517 632 447482665 447482779 3.290000e-36 163.0
28 TraesCS2A01G465400 chr1A 92.308 117 6 3 517 632 554445872 554445986 3.290000e-36 163.0
29 TraesCS2A01G465400 chr1A 92.308 117 6 3 517 632 554446411 554446525 3.290000e-36 163.0
30 TraesCS2A01G465400 chr1A 87.097 124 5 6 397 510 168443991 168444113 3.340000e-26 130.0
31 TraesCS2A01G465400 chr5B 88.189 127 4 6 397 513 493986448 493986323 1.540000e-29 141.0
32 TraesCS2A01G465400 chr6B 86.014 143 3 10 397 528 10883077 10883213 1.990000e-28 137.0
33 TraesCS2A01G465400 chr1B 87.903 124 4 6 397 510 340207546 340207668 7.170000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G465400 chr2A 710266565 710270677 4112 True 7596 7596 100.0000 1 4113 1 chr2A.!!$R1 4112
1 TraesCS2A01G465400 chr2B 683173581 683176381 2800 True 3893 3893 91.8760 872 3667 1 chr2B.!!$R1 2795
2 TraesCS2A01G465400 chr2D 571539744 571543509 3765 True 2461 2968 90.6595 21 3856 2 chr2D.!!$R3 3835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.244994 CTCGGCAGCACTACAAGAGT 59.755 55.0 0.00 0.00 39.82 3.24 F
289 290 0.326618 GTGGGATTGGAGGAGGGAGA 60.327 60.0 0.00 0.00 0.00 3.71 F
1353 1420 0.105039 ATCTTCAAGATCCCGACGGC 59.895 55.0 8.86 0.00 25.75 5.68 F
1412 1479 0.035881 CTCTGTTCTGCCTGCAGGAA 59.964 55.0 37.21 26.78 43.75 3.36 F
1995 2073 0.318441 TGGTGAGTGTAGCTGAGCAC 59.682 55.0 7.39 3.54 34.08 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1244 1290 0.595588 CCGCTGCATACACCAAAACA 59.404 50.0 0.00 0.0 0.00 2.83 R
1372 1439 0.824759 AAGAATCGACGGAAGGGGAG 59.175 55.0 0.00 0.0 0.00 4.30 R
2415 2493 0.456653 CGCCTGCAACATGCTTTACC 60.457 55.0 3.78 0.0 45.31 2.85 R
2924 3003 0.799534 GCATGCTCAAACACATCCGC 60.800 55.0 11.37 0.0 0.00 5.54 R
3951 4055 0.312102 AAAGCTGCAACTTCCTTCGC 59.688 50.0 2.20 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.403038 CTTCTGTCGGTGATGGTTCTTT 58.597 45.455 0.00 0.00 0.00 2.52
52 53 1.993370 CGGTGATGGTTCTTTCGACTC 59.007 52.381 0.00 0.00 0.00 3.36
98 99 2.914097 GCCAAGCCAAGCACCTGT 60.914 61.111 0.00 0.00 0.00 4.00
123 124 3.520290 TCGCTTACAAATCGTCCTGAT 57.480 42.857 0.00 0.00 39.67 2.90
129 130 5.500931 GCTTACAAATCGTCCTGATCTTTCG 60.501 44.000 0.00 0.00 35.84 3.46
136 137 2.159476 CGTCCTGATCTTTCGTACCGAA 60.159 50.000 0.00 0.00 44.28 4.30
140 141 4.158949 TCCTGATCTTTCGTACCGAATTCA 59.841 41.667 6.22 4.11 45.28 2.57
145 146 3.372822 TCTTTCGTACCGAATTCAATGGC 59.627 43.478 6.22 0.00 45.28 4.40
147 148 3.804786 TCGTACCGAATTCAATGGCTA 57.195 42.857 6.22 0.00 31.06 3.93
168 169 1.270907 GTCGCCATGATCCCTATCCT 58.729 55.000 0.00 0.00 0.00 3.24
169 170 1.205893 GTCGCCATGATCCCTATCCTC 59.794 57.143 0.00 0.00 0.00 3.71
171 172 1.836166 CGCCATGATCCCTATCCTCAT 59.164 52.381 0.00 0.00 0.00 2.90
180 181 7.206789 TGATCCCTATCCTCATAACAAAACA 57.793 36.000 0.00 0.00 0.00 2.83
189 190 4.542735 CTCATAACAAAACACGGGGAAAC 58.457 43.478 0.00 0.00 0.00 2.78
204 205 1.609841 GGAAACCCTAACCCACACGAG 60.610 57.143 0.00 0.00 0.00 4.18
213 214 1.740296 CCCACACGAGCCCTAAACG 60.740 63.158 0.00 0.00 0.00 3.60
237 238 0.244994 CTCGGCAGCACTACAAGAGT 59.755 55.000 0.00 0.00 39.82 3.24
253 254 2.600470 GTGCCCCTTGTTCACCCC 60.600 66.667 0.00 0.00 0.00 4.95
289 290 0.326618 GTGGGATTGGAGGAGGGAGA 60.327 60.000 0.00 0.00 0.00 3.71
299 300 2.182030 GAGGGAGACTCAACGCGG 59.818 66.667 12.47 0.00 45.85 6.46
356 357 2.093128 GCGAGAGGGGAAACTGGAATAA 60.093 50.000 0.00 0.00 0.00 1.40
357 358 3.532542 CGAGAGGGGAAACTGGAATAAC 58.467 50.000 0.00 0.00 0.00 1.89
379 380 7.452880 AACAGAATTGTTATTAGCAGCTTCA 57.547 32.000 0.00 0.00 45.45 3.02
395 396 2.600792 GCTTCAAGAGTTGCGTTGTGAG 60.601 50.000 0.00 0.00 0.00 3.51
401 402 2.158957 AGAGTTGCGTTGTGAGGAAGAA 60.159 45.455 0.00 0.00 0.00 2.52
421 435 8.510505 GGAAGAATGATAGCATACCAAAGATTC 58.489 37.037 0.00 0.00 33.44 2.52
425 439 9.674824 GAATGATAGCATACCAAAGATTCAAAG 57.325 33.333 0.00 0.00 33.44 2.77
552 570 4.141505 CCAAAACAAAGGGAGTTGGGATTT 60.142 41.667 0.00 0.00 36.00 2.17
561 579 3.385755 GGGAGTTGGGATTTCATTGGATG 59.614 47.826 0.00 0.00 0.00 3.51
589 607 2.110901 AAGAAGATGCAGCACAGAGG 57.889 50.000 4.07 0.00 0.00 3.69
594 612 1.072806 AGATGCAGCACAGAGGAAACA 59.927 47.619 4.07 0.00 0.00 2.83
598 616 2.099592 TGCAGCACAGAGGAAACAAAAG 59.900 45.455 0.00 0.00 0.00 2.27
611 629 5.596772 AGGAAACAAAAGGCTAAACTAAGCA 59.403 36.000 0.00 0.00 44.64 3.91
672 693 0.813821 GGGAGCTCATGCCAGAAAAC 59.186 55.000 17.19 0.00 39.77 2.43
685 706 6.469782 TGCCAGAAAACTTGAAGATTCTTT 57.530 33.333 12.76 2.10 30.01 2.52
696 717 5.458041 TGAAGATTCTTTCCTTTTGGCAG 57.542 39.130 0.00 0.00 40.12 4.85
697 718 4.281688 TGAAGATTCTTTCCTTTTGGCAGG 59.718 41.667 0.00 0.00 40.12 4.85
701 722 0.752054 CTTTCCTTTTGGCAGGTGCA 59.248 50.000 4.01 0.00 44.36 4.57
705 726 2.124109 TTTTGGCAGGTGCACCGA 60.124 55.556 29.68 12.70 44.36 4.69
717 738 4.092968 CAGGTGCACCGACTAGTATTTTTC 59.907 45.833 29.68 0.11 42.08 2.29
732 753 7.681939 AGTATTTTTCATGTACACCATTCGT 57.318 32.000 0.00 0.00 0.00 3.85
735 756 9.997482 GTATTTTTCATGTACACCATTCGTATT 57.003 29.630 0.00 0.00 0.00 1.89
791 812 4.460948 TGGTTCGGAGGTAGTATTTGAC 57.539 45.455 0.00 0.00 0.00 3.18
820 841 6.980416 AAAAGTCCTTCTAGTGTGAGTAGT 57.020 37.500 0.00 0.00 0.00 2.73
821 842 8.474710 AAAAAGTCCTTCTAGTGTGAGTAGTA 57.525 34.615 0.00 0.00 0.00 1.82
822 843 8.474710 AAAAGTCCTTCTAGTGTGAGTAGTAA 57.525 34.615 0.00 0.00 0.00 2.24
823 844 7.451501 AAGTCCTTCTAGTGTGAGTAGTAAC 57.548 40.000 0.00 0.00 0.00 2.50
824 845 6.540995 AGTCCTTCTAGTGTGAGTAGTAACA 58.459 40.000 0.00 0.00 0.00 2.41
825 846 7.002879 AGTCCTTCTAGTGTGAGTAGTAACAA 58.997 38.462 0.00 0.00 0.00 2.83
826 847 7.670559 AGTCCTTCTAGTGTGAGTAGTAACAAT 59.329 37.037 0.00 0.00 0.00 2.71
827 848 8.954350 GTCCTTCTAGTGTGAGTAGTAACAATA 58.046 37.037 0.00 0.00 0.00 1.90
828 849 9.175312 TCCTTCTAGTGTGAGTAGTAACAATAG 57.825 37.037 14.13 14.13 43.09 1.73
829 850 7.916450 CCTTCTAGTGTGAGTAGTAACAATAGC 59.084 40.741 15.14 0.00 42.05 2.97
830 851 7.933215 TCTAGTGTGAGTAGTAACAATAGCA 57.067 36.000 15.14 4.78 42.05 3.49
831 852 7.986562 TCTAGTGTGAGTAGTAACAATAGCAG 58.013 38.462 15.14 0.00 42.05 4.24
854 875 7.061905 GCAGAATAGCTCTTATACGCGATAAAA 59.938 37.037 15.93 0.00 29.07 1.52
925 950 1.035139 GATAACCCCTTCGCCGACTA 58.965 55.000 0.00 0.00 0.00 2.59
935 965 4.464112 CCTTCGCCGACTAAAAGAAAAAG 58.536 43.478 0.00 0.00 0.00 2.27
937 967 5.106673 CCTTCGCCGACTAAAAGAAAAAGAT 60.107 40.000 0.00 0.00 0.00 2.40
939 969 7.360607 CCTTCGCCGACTAAAAGAAAAAGATAA 60.361 37.037 0.00 0.00 0.00 1.75
940 970 6.824557 TCGCCGACTAAAAGAAAAAGATAAC 58.175 36.000 0.00 0.00 0.00 1.89
941 971 6.019762 CGCCGACTAAAAGAAAAAGATAACC 58.980 40.000 0.00 0.00 0.00 2.85
943 973 6.072342 GCCGACTAAAAGAAAAAGATAACCCA 60.072 38.462 0.00 0.00 0.00 4.51
944 974 7.362660 GCCGACTAAAAGAAAAAGATAACCCAT 60.363 37.037 0.00 0.00 0.00 4.00
945 975 8.520351 CCGACTAAAAGAAAAAGATAACCCATT 58.480 33.333 0.00 0.00 0.00 3.16
1183 1220 1.068121 CCCCAACCCCATCTATCCTC 58.932 60.000 0.00 0.00 0.00 3.71
1205 1247 0.882474 CGTCTTCAACCTCCGTCTCT 59.118 55.000 0.00 0.00 0.00 3.10
1233 1279 1.735376 ATAGCGTACCAGCCTGACCG 61.735 60.000 0.00 0.00 38.01 4.79
1243 1289 2.438434 CCTGACCGCCCACCAATC 60.438 66.667 0.00 0.00 0.00 2.67
1244 1290 2.671070 CTGACCGCCCACCAATCT 59.329 61.111 0.00 0.00 0.00 2.40
1348 1415 2.991250 ACCACAATCTTCAAGATCCCG 58.009 47.619 0.00 0.00 32.89 5.14
1349 1416 2.571653 ACCACAATCTTCAAGATCCCGA 59.428 45.455 0.00 0.00 32.89 5.14
1352 1419 2.205074 CAATCTTCAAGATCCCGACGG 58.795 52.381 6.99 6.99 32.89 4.79
1353 1420 0.105039 ATCTTCAAGATCCCGACGGC 59.895 55.000 8.86 0.00 25.75 5.68
1354 1421 1.878522 CTTCAAGATCCCGACGGCG 60.879 63.158 1.94 1.94 37.24 6.46
1355 1422 2.279502 CTTCAAGATCCCGACGGCGA 62.280 60.000 15.16 7.99 40.82 5.54
1356 1423 1.879737 TTCAAGATCCCGACGGCGAA 61.880 55.000 15.16 0.00 40.82 4.70
1357 1424 2.165301 CAAGATCCCGACGGCGAAC 61.165 63.158 15.16 6.45 40.82 3.95
1398 1465 3.128938 CCTTCCGTCGATTCTTACTCTGT 59.871 47.826 0.00 0.00 0.00 3.41
1412 1479 0.035881 CTCTGTTCTGCCTGCAGGAA 59.964 55.000 37.21 26.78 43.75 3.36
1451 1518 1.212229 GACGGAGGTGTTCGAGGAC 59.788 63.158 0.00 0.00 0.00 3.85
1514 1581 1.303309 CGTCTCCTTCCATTGCATCC 58.697 55.000 0.00 0.00 0.00 3.51
1529 1596 1.884579 GCATCCCCATTGTGCTGATAG 59.115 52.381 0.00 0.00 36.02 2.08
1538 1605 5.221185 CCCATTGTGCTGATAGATTTCCTTG 60.221 44.000 0.00 0.00 0.00 3.61
1547 1614 4.718774 TGATAGATTTCCTTGAGCCTCAGT 59.281 41.667 0.00 0.00 0.00 3.41
1551 1618 6.072199 AGATTTCCTTGAGCCTCAGTTATT 57.928 37.500 0.00 0.00 0.00 1.40
1677 1745 4.520492 AGGTTCTTGTGCTTCTATGGTTTG 59.480 41.667 0.00 0.00 0.00 2.93
1940 2018 4.351192 GTGTCTTTCGAGCAAATTGTGTT 58.649 39.130 0.00 0.00 0.00 3.32
1994 2072 0.605083 CTGGTGAGTGTAGCTGAGCA 59.395 55.000 7.39 0.00 36.52 4.26
1995 2073 0.318441 TGGTGAGTGTAGCTGAGCAC 59.682 55.000 7.39 3.54 34.08 4.40
1997 2075 1.671261 GGTGAGTGTAGCTGAGCACAG 60.671 57.143 7.39 6.80 45.91 3.66
2002 2080 1.047801 TGTAGCTGAGCACAGTTCCA 58.952 50.000 7.39 0.91 45.04 3.53
2003 2081 1.270305 TGTAGCTGAGCACAGTTCCAC 60.270 52.381 7.39 3.76 45.04 4.02
2006 2084 1.024271 GCTGAGCACAGTTCCACAAA 58.976 50.000 12.89 0.00 45.04 2.83
2018 2096 6.692681 CACAGTTCCACAAATGTTCTAAGTTG 59.307 38.462 0.00 0.00 38.77 3.16
2033 2111 9.128404 TGTTCTAAGTTGTATACGATATGTCCT 57.872 33.333 0.00 0.00 0.00 3.85
2048 2126 0.453390 GTCCTTGTGCTTATGCTGGC 59.547 55.000 1.96 0.00 40.48 4.85
2049 2127 0.329261 TCCTTGTGCTTATGCTGGCT 59.671 50.000 1.96 0.00 40.48 4.75
2050 2128 1.180029 CCTTGTGCTTATGCTGGCTT 58.820 50.000 1.96 0.00 40.48 4.35
2051 2129 2.026356 TCCTTGTGCTTATGCTGGCTTA 60.026 45.455 1.96 0.00 40.48 3.09
2052 2130 2.357009 CCTTGTGCTTATGCTGGCTTAG 59.643 50.000 1.96 0.00 40.48 2.18
2053 2131 2.787473 TGTGCTTATGCTGGCTTAGT 57.213 45.000 1.96 0.00 40.48 2.24
2054 2132 3.071874 TGTGCTTATGCTGGCTTAGTT 57.928 42.857 1.96 0.00 40.48 2.24
2055 2133 3.420893 TGTGCTTATGCTGGCTTAGTTT 58.579 40.909 1.96 0.00 40.48 2.66
2056 2134 3.826157 TGTGCTTATGCTGGCTTAGTTTT 59.174 39.130 1.96 0.00 40.48 2.43
2057 2135 4.280677 TGTGCTTATGCTGGCTTAGTTTTT 59.719 37.500 1.96 0.00 40.48 1.94
2084 2162 9.906660 TGTTTTAGTTGATGTTATGGAATTGAC 57.093 29.630 0.00 0.00 0.00 3.18
2092 2170 4.264253 TGTTATGGAATTGACAGCTGAGG 58.736 43.478 23.35 0.00 0.00 3.86
2097 2175 1.881973 GAATTGACAGCTGAGGTGCAA 59.118 47.619 23.35 18.41 34.04 4.08
2149 2227 6.545666 TCACTTTAAGAAAAGGCATCACAAGA 59.454 34.615 0.00 0.00 45.39 3.02
2223 2301 1.021968 GTGGGCGGGTATGACAATTC 58.978 55.000 0.00 0.00 0.00 2.17
2229 2307 3.391049 GCGGGTATGACAATTCTCTACC 58.609 50.000 0.00 0.00 33.35 3.18
2243 2321 7.599998 ACAATTCTCTACCATTTTCATGCAAAC 59.400 33.333 0.00 0.00 0.00 2.93
2300 2378 2.435805 GGGTCCTTCTGTATGCATCAGA 59.564 50.000 18.87 18.87 39.71 3.27
2320 2398 7.439157 TCAGATTTGTCCAATGACTGTTTAG 57.561 36.000 0.00 0.00 42.28 1.85
2324 2402 6.463995 TTTGTCCAATGACTGTTTAGCTTT 57.536 33.333 0.00 0.00 42.28 3.51
2336 2414 1.896220 TTAGCTTTGGCCAGTCACTG 58.104 50.000 5.11 0.00 39.73 3.66
2360 2438 9.155975 CTGTTTTGTTAGTTCTAGCTGTATGAT 57.844 33.333 0.00 0.00 0.00 2.45
2377 2455 7.040201 GCTGTATGATGGTATGATGGATGTTTT 60.040 37.037 0.00 0.00 0.00 2.43
2386 2464 8.052141 TGGTATGATGGATGTTTTATTGACTGA 58.948 33.333 0.00 0.00 0.00 3.41
2397 2475 7.841956 TGTTTTATTGACTGAACCCTGAAAAA 58.158 30.769 0.00 0.00 0.00 1.94
2398 2476 7.978975 TGTTTTATTGACTGAACCCTGAAAAAG 59.021 33.333 0.00 0.00 0.00 2.27
2406 2484 4.714632 TGAACCCTGAAAAAGTGTCCTAG 58.285 43.478 0.00 0.00 0.00 3.02
2407 2485 4.410883 TGAACCCTGAAAAAGTGTCCTAGA 59.589 41.667 0.00 0.00 0.00 2.43
2452 2530 5.007626 GCAGGCGTGAAACATCTATCATTTA 59.992 40.000 11.29 0.00 35.74 1.40
2626 2705 2.554032 CCTTCATGTTGTCAGTTGGACC 59.446 50.000 0.00 0.00 46.38 4.46
2627 2706 3.213506 CTTCATGTTGTCAGTTGGACCA 58.786 45.455 0.00 0.00 46.38 4.02
2628 2707 2.571212 TCATGTTGTCAGTTGGACCAC 58.429 47.619 0.00 0.00 46.38 4.16
2744 2823 7.611467 TCCAGTGCAAAATTACTATTCAGACAT 59.389 33.333 0.00 0.00 0.00 3.06
2747 2826 8.462016 AGTGCAAAATTACTATTCAGACATTCC 58.538 33.333 0.00 0.00 0.00 3.01
2773 2852 7.119262 CCTTTTCTTTATCTTCGACAAAGGCTA 59.881 37.037 0.00 0.00 34.32 3.93
2799 2878 8.380099 AGTGTTGATTATGTAGGGAGTTTAACA 58.620 33.333 0.00 0.00 0.00 2.41
2809 2888 4.479158 AGGGAGTTTAACATTCAAAGGCA 58.521 39.130 0.00 0.00 0.00 4.75
2825 2904 3.409026 AGGCAGGTCAAGTACTCTTTG 57.591 47.619 0.00 0.00 0.00 2.77
2851 2930 7.362662 GCAAGTTGACATCTCACTTTATTTCA 58.637 34.615 7.16 0.00 0.00 2.69
2855 2934 9.288576 AGTTGACATCTCACTTTATTTCATTGA 57.711 29.630 0.00 0.00 0.00 2.57
2890 2969 6.405538 TGTACAATCAGATGTGCTTGATGTA 58.594 36.000 12.80 2.23 36.92 2.29
2924 3003 5.419542 TGAGAGAAAGGTTTGATGGATACG 58.580 41.667 0.00 0.00 42.51 3.06
2975 3054 6.951256 TTGATAAAGATCTTCAGTGTGACG 57.049 37.500 8.78 0.00 32.79 4.35
3040 3119 1.030457 GGGAAATCCATGCTGAGCTG 58.970 55.000 5.83 1.28 37.91 4.24
3079 3158 3.262420 CAGGAGGATGTACCAAAAGACG 58.738 50.000 0.00 0.00 42.04 4.18
3210 3289 2.173519 ACTTTCACATTCCCTGGCATG 58.826 47.619 0.00 3.26 0.00 4.06
3307 3386 6.778821 TCTCTCCAGTGGTTGATATTTTTCA 58.221 36.000 9.54 0.00 0.00 2.69
3310 3389 9.177608 CTCTCCAGTGGTTGATATTTTTCAATA 57.822 33.333 9.54 0.00 37.88 1.90
3327 3406 6.775939 TTCAATATGAGATCATCGTTCTGC 57.224 37.500 0.00 0.00 37.76 4.26
3355 3434 4.320057 GGAAGAAAGATCACAGTGCAGTTG 60.320 45.833 0.00 0.00 0.00 3.16
3456 3535 4.935352 TGAAAGGCAAGCAAGTTATGTT 57.065 36.364 0.00 0.00 0.00 2.71
3466 3545 4.959723 AGCAAGTTATGTTGTTGGCAATT 58.040 34.783 1.92 0.00 36.92 2.32
3489 3568 2.560105 AGAGCATTGTCTTTTGCCCTTC 59.440 45.455 0.00 0.00 39.72 3.46
3491 3570 3.758554 GAGCATTGTCTTTTGCCCTTCTA 59.241 43.478 0.00 0.00 39.72 2.10
3519 3618 5.557891 AAGAGCATTGCTGTTTGATCTAC 57.442 39.130 17.51 0.00 39.07 2.59
3521 3620 3.599343 AGCATTGCTGTTTGATCTACGA 58.401 40.909 11.09 0.00 37.57 3.43
3523 3622 3.372206 GCATTGCTGTTTGATCTACGACT 59.628 43.478 0.16 0.00 0.00 4.18
3525 3624 2.959516 TGCTGTTTGATCTACGACTGG 58.040 47.619 0.00 0.00 0.00 4.00
3532 3631 6.097356 TGTTTGATCTACGACTGGATGTAAC 58.903 40.000 0.00 0.00 0.00 2.50
3555 3654 0.250640 ACTTTGCTCTCAGTGGCCAG 60.251 55.000 5.11 0.00 0.00 4.85
3577 3676 0.469917 ACGATGGATGGGCGATTTCT 59.530 50.000 0.00 0.00 0.00 2.52
3611 3710 7.603651 TGGTTCTTGTAAGAGACTGATACTTC 58.396 38.462 0.00 0.00 36.22 3.01
3646 3745 8.486383 CGAAAAATGTTTACATCTGCAAATTCA 58.514 29.630 0.00 0.00 35.10 2.57
3653 3752 9.571810 TGTTTACATCTGCAAATTCATATCAAC 57.428 29.630 0.00 0.00 0.00 3.18
3725 3824 1.495579 ATTGCACCACAGCCTCCTCT 61.496 55.000 0.00 0.00 0.00 3.69
3736 3840 1.331399 GCCTCCTCTCCCTGGTGTAC 61.331 65.000 0.00 0.00 0.00 2.90
3752 3856 3.362706 GTGTACCATCTGGAGACACCTA 58.637 50.000 19.61 0.00 43.34 3.08
3810 3914 6.238621 CCTTTGCTGAACTAAACATGTGTGTA 60.239 38.462 0.00 0.00 37.67 2.90
3822 3926 2.427232 TGTGTGTAGACTGTTACGCC 57.573 50.000 9.53 4.61 34.04 5.68
3833 3937 4.155644 AGACTGTTACGCCAGTAGTACTTC 59.844 45.833 0.00 0.00 45.46 3.01
3847 3951 3.314693 AGTACTTCCTGTCCTGTTTCCA 58.685 45.455 0.00 0.00 0.00 3.53
3856 3960 0.112995 TCCTGTTTCCATGCCTGCTT 59.887 50.000 0.00 0.00 0.00 3.91
3857 3961 0.971386 CCTGTTTCCATGCCTGCTTT 59.029 50.000 0.00 0.00 0.00 3.51
3858 3962 1.345415 CCTGTTTCCATGCCTGCTTTT 59.655 47.619 0.00 0.00 0.00 2.27
3859 3963 2.224354 CCTGTTTCCATGCCTGCTTTTT 60.224 45.455 0.00 0.00 0.00 1.94
3893 3997 7.928307 AAAGCAGCTCTATTAAATCTCAACA 57.072 32.000 0.00 0.00 0.00 3.33
3894 3998 7.551035 AAGCAGCTCTATTAAATCTCAACAG 57.449 36.000 0.00 0.00 0.00 3.16
3895 3999 6.882656 AGCAGCTCTATTAAATCTCAACAGA 58.117 36.000 0.00 0.00 0.00 3.41
3896 4000 7.507829 AGCAGCTCTATTAAATCTCAACAGAT 58.492 34.615 0.00 0.00 41.59 2.90
3897 4001 8.646004 AGCAGCTCTATTAAATCTCAACAGATA 58.354 33.333 0.00 0.00 38.55 1.98
3898 4002 9.265901 GCAGCTCTATTAAATCTCAACAGATAA 57.734 33.333 0.00 0.00 38.55 1.75
3909 4013 9.753674 AAATCTCAACAGATAAAGGGATACAAA 57.246 29.630 0.00 0.00 38.55 2.83
3910 4014 8.738645 ATCTCAACAGATAAAGGGATACAAAC 57.261 34.615 0.00 0.00 37.63 2.93
3911 4015 7.918076 TCTCAACAGATAAAGGGATACAAACT 58.082 34.615 0.00 0.00 39.74 2.66
3912 4016 9.042450 TCTCAACAGATAAAGGGATACAAACTA 57.958 33.333 0.00 0.00 39.74 2.24
3913 4017 9.838339 CTCAACAGATAAAGGGATACAAACTAT 57.162 33.333 0.00 0.00 39.74 2.12
3914 4018 9.613428 TCAACAGATAAAGGGATACAAACTATG 57.387 33.333 0.00 0.00 39.74 2.23
3915 4019 9.396022 CAACAGATAAAGGGATACAAACTATGT 57.604 33.333 0.00 0.00 46.36 2.29
3916 4020 9.614792 AACAGATAAAGGGATACAAACTATGTC 57.385 33.333 0.00 0.00 42.70 3.06
3917 4021 8.768397 ACAGATAAAGGGATACAAACTATGTCA 58.232 33.333 0.00 0.00 42.70 3.58
3918 4022 9.265901 CAGATAAAGGGATACAAACTATGTCAG 57.734 37.037 0.00 0.00 42.70 3.51
3919 4023 8.432805 AGATAAAGGGATACAAACTATGTCAGG 58.567 37.037 0.00 0.00 42.70 3.86
3920 4024 6.388619 AAAGGGATACAAACTATGTCAGGT 57.611 37.500 0.00 0.00 42.70 4.00
3921 4025 5.615925 AGGGATACAAACTATGTCAGGTC 57.384 43.478 0.00 0.00 42.70 3.85
3922 4026 5.281314 AGGGATACAAACTATGTCAGGTCT 58.719 41.667 0.00 0.00 42.70 3.85
3923 4027 5.726793 AGGGATACAAACTATGTCAGGTCTT 59.273 40.000 0.00 0.00 42.70 3.01
3924 4028 6.215636 AGGGATACAAACTATGTCAGGTCTTT 59.784 38.462 0.00 0.00 42.70 2.52
3925 4029 6.539103 GGGATACAAACTATGTCAGGTCTTTC 59.461 42.308 0.00 0.00 42.70 2.62
3926 4030 6.539103 GGATACAAACTATGTCAGGTCTTTCC 59.461 42.308 0.00 0.00 42.70 3.13
3927 4031 4.315803 ACAAACTATGTCAGGTCTTTCCG 58.684 43.478 0.00 0.00 37.96 4.30
3928 4032 4.202326 ACAAACTATGTCAGGTCTTTCCGT 60.202 41.667 0.00 0.00 37.96 4.69
3929 4033 4.618920 AACTATGTCAGGTCTTTCCGTT 57.381 40.909 0.00 0.00 41.99 4.44
3930 4034 5.733620 AACTATGTCAGGTCTTTCCGTTA 57.266 39.130 0.00 0.00 41.99 3.18
3931 4035 5.326200 ACTATGTCAGGTCTTTCCGTTAG 57.674 43.478 0.00 0.00 41.99 2.34
3932 4036 2.450609 TGTCAGGTCTTTCCGTTAGC 57.549 50.000 0.00 0.00 41.99 3.09
3933 4037 1.001633 TGTCAGGTCTTTCCGTTAGCC 59.998 52.381 0.00 0.00 41.99 3.93
3934 4038 1.001633 GTCAGGTCTTTCCGTTAGCCA 59.998 52.381 0.00 0.00 41.99 4.75
3935 4039 1.695242 TCAGGTCTTTCCGTTAGCCAA 59.305 47.619 0.00 0.00 41.99 4.52
3936 4040 2.105134 TCAGGTCTTTCCGTTAGCCAAA 59.895 45.455 0.00 0.00 41.99 3.28
3937 4041 2.484264 CAGGTCTTTCCGTTAGCCAAAG 59.516 50.000 0.00 0.00 41.99 2.77
3938 4042 2.370849 AGGTCTTTCCGTTAGCCAAAGA 59.629 45.455 0.00 0.00 41.99 2.52
3939 4043 3.009143 AGGTCTTTCCGTTAGCCAAAGAT 59.991 43.478 0.00 0.00 38.19 2.40
3940 4044 3.127030 GGTCTTTCCGTTAGCCAAAGATG 59.873 47.826 0.00 0.00 38.19 2.90
3949 4053 2.824041 CCAAAGATGGCGTCCCGG 60.824 66.667 2.37 0.00 40.58 5.73
3950 4054 2.824041 CAAAGATGGCGTCCCGGG 60.824 66.667 16.85 16.85 0.00 5.73
3951 4055 4.109675 AAAGATGGCGTCCCGGGG 62.110 66.667 23.50 6.77 0.00 5.73
3960 4064 4.468689 GTCCCGGGGCGAAGGAAG 62.469 72.222 23.50 0.00 0.00 3.46
3962 4066 4.029809 CCCGGGGCGAAGGAAGTT 62.030 66.667 14.71 0.00 0.00 2.66
3963 4067 2.746277 CCGGGGCGAAGGAAGTTG 60.746 66.667 0.00 0.00 0.00 3.16
3964 4068 3.431725 CGGGGCGAAGGAAGTTGC 61.432 66.667 0.00 0.00 0.00 4.17
3965 4069 2.282180 GGGGCGAAGGAAGTTGCA 60.282 61.111 0.00 0.00 0.00 4.08
3966 4070 2.335712 GGGGCGAAGGAAGTTGCAG 61.336 63.158 0.00 0.00 0.00 4.41
3967 4071 2.563427 GGCGAAGGAAGTTGCAGC 59.437 61.111 0.00 0.00 0.00 5.25
3968 4072 1.968540 GGCGAAGGAAGTTGCAGCT 60.969 57.895 0.00 0.00 0.00 4.24
3969 4073 1.518903 GGCGAAGGAAGTTGCAGCTT 61.519 55.000 16.33 16.33 0.00 3.74
3970 4074 0.312102 GCGAAGGAAGTTGCAGCTTT 59.688 50.000 17.41 1.13 0.00 3.51
3971 4075 1.535462 GCGAAGGAAGTTGCAGCTTTA 59.465 47.619 17.41 0.00 0.00 1.85
3972 4076 2.413371 GCGAAGGAAGTTGCAGCTTTAG 60.413 50.000 17.41 8.29 0.00 1.85
3973 4077 2.413371 CGAAGGAAGTTGCAGCTTTAGC 60.413 50.000 17.41 4.66 42.49 3.09
3974 4078 2.276732 AGGAAGTTGCAGCTTTAGCA 57.723 45.000 17.41 0.00 45.16 3.49
3982 4086 4.430137 TTGCAGCTTTAGCAAGAGAATG 57.570 40.909 5.88 0.00 46.13 2.67
3983 4087 3.678289 TGCAGCTTTAGCAAGAGAATGA 58.322 40.909 4.33 0.00 45.16 2.57
3984 4088 3.688185 TGCAGCTTTAGCAAGAGAATGAG 59.312 43.478 4.33 0.00 45.16 2.90
3985 4089 3.487209 GCAGCTTTAGCAAGAGAATGAGC 60.487 47.826 4.33 0.00 45.16 4.26
3986 4090 3.940221 CAGCTTTAGCAAGAGAATGAGCT 59.060 43.478 4.33 0.00 45.16 4.09
3987 4091 4.395542 CAGCTTTAGCAAGAGAATGAGCTT 59.604 41.667 4.33 0.00 45.16 3.74
3988 4092 4.635324 AGCTTTAGCAAGAGAATGAGCTTC 59.365 41.667 4.33 0.00 45.16 3.86
3989 4093 4.201901 GCTTTAGCAAGAGAATGAGCTTCC 60.202 45.833 0.00 0.00 41.59 3.46
3990 4094 4.833478 TTAGCAAGAGAATGAGCTTCCT 57.167 40.909 0.00 0.00 38.47 3.36
3991 4095 3.717452 AGCAAGAGAATGAGCTTCCTT 57.283 42.857 0.00 0.00 34.11 3.36
3992 4096 4.833478 AGCAAGAGAATGAGCTTCCTTA 57.167 40.909 0.00 0.00 34.11 2.69
3993 4097 5.370875 AGCAAGAGAATGAGCTTCCTTAT 57.629 39.130 0.00 0.00 34.11 1.73
3994 4098 5.753716 AGCAAGAGAATGAGCTTCCTTATT 58.246 37.500 0.00 0.00 34.11 1.40
3995 4099 6.893583 AGCAAGAGAATGAGCTTCCTTATTA 58.106 36.000 0.00 0.00 34.11 0.98
3996 4100 6.765512 AGCAAGAGAATGAGCTTCCTTATTAC 59.234 38.462 0.00 0.00 34.11 1.89
3997 4101 6.540189 GCAAGAGAATGAGCTTCCTTATTACA 59.460 38.462 0.00 0.00 34.11 2.41
3998 4102 7.254727 GCAAGAGAATGAGCTTCCTTATTACAG 60.255 40.741 0.00 0.00 34.11 2.74
3999 4103 6.287525 AGAGAATGAGCTTCCTTATTACAGC 58.712 40.000 0.00 0.00 34.11 4.40
4000 4104 5.372373 AGAATGAGCTTCCTTATTACAGCC 58.628 41.667 0.00 0.00 34.11 4.85
4001 4105 4.778213 ATGAGCTTCCTTATTACAGCCA 57.222 40.909 0.00 0.00 32.25 4.75
4002 4106 4.778213 TGAGCTTCCTTATTACAGCCAT 57.222 40.909 0.00 0.00 32.25 4.40
4003 4107 4.454678 TGAGCTTCCTTATTACAGCCATG 58.545 43.478 0.00 0.00 32.25 3.66
4004 4108 4.164030 TGAGCTTCCTTATTACAGCCATGA 59.836 41.667 0.00 0.00 32.25 3.07
4005 4109 4.712476 AGCTTCCTTATTACAGCCATGAG 58.288 43.478 0.00 0.00 32.25 2.90
4006 4110 4.164988 AGCTTCCTTATTACAGCCATGAGT 59.835 41.667 0.00 0.00 32.25 3.41
4007 4111 4.884164 GCTTCCTTATTACAGCCATGAGTT 59.116 41.667 0.00 0.00 0.00 3.01
4008 4112 5.358160 GCTTCCTTATTACAGCCATGAGTTT 59.642 40.000 0.00 0.00 0.00 2.66
4009 4113 6.458888 GCTTCCTTATTACAGCCATGAGTTTC 60.459 42.308 0.00 0.00 0.00 2.78
4010 4114 6.061022 TCCTTATTACAGCCATGAGTTTCA 57.939 37.500 0.00 0.00 0.00 2.69
4011 4115 6.662755 TCCTTATTACAGCCATGAGTTTCAT 58.337 36.000 0.00 0.00 37.65 2.57
4027 4131 9.730705 ATGAGTTTCATGAATTAAGTCTGAAGA 57.269 29.630 9.40 0.00 35.43 2.87
4028 4132 9.559732 TGAGTTTCATGAATTAAGTCTGAAGAA 57.440 29.630 9.40 1.12 0.00 2.52
4041 4145 9.559732 TTAAGTCTGAAGAATTGAACATCAAGA 57.440 29.630 3.39 0.00 40.05 3.02
4042 4146 7.670009 AGTCTGAAGAATTGAACATCAAGAG 57.330 36.000 0.00 0.00 40.05 2.85
4043 4147 6.149142 AGTCTGAAGAATTGAACATCAAGAGC 59.851 38.462 0.00 0.00 40.05 4.09
4044 4148 6.149142 GTCTGAAGAATTGAACATCAAGAGCT 59.851 38.462 0.00 0.00 40.05 4.09
4045 4149 6.713903 TCTGAAGAATTGAACATCAAGAGCTT 59.286 34.615 0.00 2.73 40.05 3.74
4046 4150 6.675026 TGAAGAATTGAACATCAAGAGCTTG 58.325 36.000 3.87 3.87 40.05 4.01
4047 4151 5.640189 AGAATTGAACATCAAGAGCTTGG 57.360 39.130 10.09 0.00 40.05 3.61
4048 4152 5.319453 AGAATTGAACATCAAGAGCTTGGA 58.681 37.500 10.09 0.00 40.05 3.53
4049 4153 5.182760 AGAATTGAACATCAAGAGCTTGGAC 59.817 40.000 10.09 0.13 40.05 4.02
4050 4154 3.777106 TGAACATCAAGAGCTTGGACT 57.223 42.857 10.09 0.00 40.78 3.85
4051 4155 4.090761 TGAACATCAAGAGCTTGGACTT 57.909 40.909 10.09 0.00 40.78 3.01
4052 4156 3.817084 TGAACATCAAGAGCTTGGACTTG 59.183 43.478 10.09 6.56 43.03 3.16
4057 4161 4.199432 TCAAGAGCTTGGACTTGATCTC 57.801 45.455 10.63 0.00 44.59 2.75
4058 4162 3.055530 TCAAGAGCTTGGACTTGATCTCC 60.056 47.826 10.63 0.00 44.59 3.71
4059 4163 2.831565 AGAGCTTGGACTTGATCTCCT 58.168 47.619 0.00 0.00 0.00 3.69
4060 4164 2.765699 AGAGCTTGGACTTGATCTCCTC 59.234 50.000 0.00 0.00 0.00 3.71
4061 4165 1.836802 AGCTTGGACTTGATCTCCTCC 59.163 52.381 0.00 0.00 0.00 4.30
4062 4166 1.556911 GCTTGGACTTGATCTCCTCCA 59.443 52.381 0.00 0.00 0.00 3.86
4063 4167 2.679349 GCTTGGACTTGATCTCCTCCAC 60.679 54.545 5.58 0.00 32.33 4.02
4064 4168 1.573108 TGGACTTGATCTCCTCCACC 58.427 55.000 0.00 0.00 0.00 4.61
4065 4169 1.203300 TGGACTTGATCTCCTCCACCA 60.203 52.381 0.00 0.00 0.00 4.17
4066 4170 1.208293 GGACTTGATCTCCTCCACCAC 59.792 57.143 0.00 0.00 0.00 4.16
4067 4171 1.208293 GACTTGATCTCCTCCACCACC 59.792 57.143 0.00 0.00 0.00 4.61
4068 4172 1.279496 CTTGATCTCCTCCACCACCA 58.721 55.000 0.00 0.00 0.00 4.17
4069 4173 0.984230 TTGATCTCCTCCACCACCAC 59.016 55.000 0.00 0.00 0.00 4.16
4070 4174 0.909610 TGATCTCCTCCACCACCACC 60.910 60.000 0.00 0.00 0.00 4.61
4071 4175 0.909610 GATCTCCTCCACCACCACCA 60.910 60.000 0.00 0.00 0.00 4.17
4072 4176 0.253347 ATCTCCTCCACCACCACCAT 60.253 55.000 0.00 0.00 0.00 3.55
4073 4177 0.415830 TCTCCTCCACCACCACCATA 59.584 55.000 0.00 0.00 0.00 2.74
4074 4178 0.541863 CTCCTCCACCACCACCATAC 59.458 60.000 0.00 0.00 0.00 2.39
4075 4179 0.118346 TCCTCCACCACCACCATACT 59.882 55.000 0.00 0.00 0.00 2.12
4076 4180 1.363280 TCCTCCACCACCACCATACTA 59.637 52.381 0.00 0.00 0.00 1.82
4077 4181 1.762957 CCTCCACCACCACCATACTAG 59.237 57.143 0.00 0.00 0.00 2.57
4078 4182 1.139058 CTCCACCACCACCATACTAGC 59.861 57.143 0.00 0.00 0.00 3.42
4079 4183 0.179084 CCACCACCACCATACTAGCG 60.179 60.000 0.00 0.00 0.00 4.26
4080 4184 0.810031 CACCACCACCATACTAGCGC 60.810 60.000 0.00 0.00 0.00 5.92
4081 4185 1.227556 CCACCACCATACTAGCGCC 60.228 63.158 2.29 0.00 0.00 6.53
4082 4186 1.227556 CACCACCATACTAGCGCCC 60.228 63.158 2.29 0.00 0.00 6.13
4083 4187 1.687840 ACCACCATACTAGCGCCCA 60.688 57.895 2.29 0.00 0.00 5.36
4084 4188 1.069765 CCACCATACTAGCGCCCAG 59.930 63.158 2.29 4.03 0.00 4.45
4085 4189 1.069765 CACCATACTAGCGCCCAGG 59.930 63.158 2.29 0.00 0.00 4.45
4086 4190 1.382695 ACCATACTAGCGCCCAGGT 60.383 57.895 2.29 0.60 0.00 4.00
4087 4191 0.105862 ACCATACTAGCGCCCAGGTA 60.106 55.000 2.29 2.61 0.00 3.08
4091 4195 2.107141 CTAGCGCCCAGGTAGTGC 59.893 66.667 2.29 0.00 43.84 4.40
4094 4198 4.840005 GCGCCCAGGTAGTGCTCC 62.840 72.222 0.00 0.00 37.75 4.70
4095 4199 3.077556 CGCCCAGGTAGTGCTCCT 61.078 66.667 0.00 0.00 35.45 3.69
4096 4200 2.660064 CGCCCAGGTAGTGCTCCTT 61.660 63.158 0.00 0.00 32.37 3.36
4097 4201 1.327690 CGCCCAGGTAGTGCTCCTTA 61.328 60.000 0.00 0.00 32.37 2.69
4098 4202 0.909623 GCCCAGGTAGTGCTCCTTAA 59.090 55.000 0.00 0.00 32.37 1.85
4099 4203 1.490910 GCCCAGGTAGTGCTCCTTAAT 59.509 52.381 0.00 0.00 32.37 1.40
4100 4204 2.746472 GCCCAGGTAGTGCTCCTTAATG 60.746 54.545 0.00 0.00 32.37 1.90
4101 4205 2.505819 CCCAGGTAGTGCTCCTTAATGT 59.494 50.000 0.00 0.00 32.37 2.71
4102 4206 3.535561 CCAGGTAGTGCTCCTTAATGTG 58.464 50.000 0.00 0.00 32.37 3.21
4103 4207 3.055094 CCAGGTAGTGCTCCTTAATGTGT 60.055 47.826 0.00 0.00 32.37 3.72
4104 4208 4.565652 CCAGGTAGTGCTCCTTAATGTGTT 60.566 45.833 0.00 0.00 32.37 3.32
4105 4209 5.003804 CAGGTAGTGCTCCTTAATGTGTTT 58.996 41.667 0.00 0.00 32.37 2.83
4106 4210 5.003804 AGGTAGTGCTCCTTAATGTGTTTG 58.996 41.667 0.00 0.00 30.18 2.93
4107 4211 5.001232 GGTAGTGCTCCTTAATGTGTTTGA 58.999 41.667 0.00 0.00 0.00 2.69
4108 4212 5.106673 GGTAGTGCTCCTTAATGTGTTTGAC 60.107 44.000 0.00 0.00 0.00 3.18
4109 4213 4.460263 AGTGCTCCTTAATGTGTTTGACA 58.540 39.130 0.00 0.00 39.53 3.58
4110 4214 4.516698 AGTGCTCCTTAATGTGTTTGACAG 59.483 41.667 0.00 0.00 38.23 3.51
4111 4215 4.275936 GTGCTCCTTAATGTGTTTGACAGT 59.724 41.667 0.00 0.00 38.23 3.55
4112 4216 5.468746 GTGCTCCTTAATGTGTTTGACAGTA 59.531 40.000 0.00 0.00 38.23 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.747989 CTCATGGGCTAGCTATTGCATG 59.252 50.000 15.72 3.84 42.74 4.06
1 2 2.374504 ACTCATGGGCTAGCTATTGCAT 59.625 45.455 15.72 0.00 42.74 3.96
2 3 1.770658 ACTCATGGGCTAGCTATTGCA 59.229 47.619 15.72 0.00 42.74 4.08
3 4 2.551459 CAACTCATGGGCTAGCTATTGC 59.449 50.000 15.72 0.00 40.05 3.56
4 5 2.551459 GCAACTCATGGGCTAGCTATTG 59.449 50.000 15.72 9.57 0.00 1.90
5 6 2.441001 AGCAACTCATGGGCTAGCTATT 59.559 45.455 15.72 0.00 35.82 1.73
6 7 2.053244 AGCAACTCATGGGCTAGCTAT 58.947 47.619 15.72 6.94 35.82 2.97
7 8 1.500474 AGCAACTCATGGGCTAGCTA 58.500 50.000 15.72 4.59 35.82 3.32
8 9 0.622665 AAGCAACTCATGGGCTAGCT 59.377 50.000 15.72 0.00 36.76 3.32
9 10 1.020437 GAAGCAACTCATGGGCTAGC 58.980 55.000 6.04 6.04 36.76 3.42
10 11 2.286872 CAGAAGCAACTCATGGGCTAG 58.713 52.381 0.00 0.00 36.76 3.42
11 12 1.630369 ACAGAAGCAACTCATGGGCTA 59.370 47.619 0.00 0.00 36.76 3.93
12 13 0.403271 ACAGAAGCAACTCATGGGCT 59.597 50.000 0.00 0.00 40.14 5.19
13 14 0.807496 GACAGAAGCAACTCATGGGC 59.193 55.000 0.00 0.00 0.00 5.36
14 15 1.081892 CGACAGAAGCAACTCATGGG 58.918 55.000 0.00 0.00 0.00 4.00
15 16 1.081892 CCGACAGAAGCAACTCATGG 58.918 55.000 0.00 0.00 0.00 3.66
16 17 1.462283 CACCGACAGAAGCAACTCATG 59.538 52.381 0.00 0.00 0.00 3.07
17 18 1.344438 TCACCGACAGAAGCAACTCAT 59.656 47.619 0.00 0.00 0.00 2.90
18 19 0.750249 TCACCGACAGAAGCAACTCA 59.250 50.000 0.00 0.00 0.00 3.41
19 20 1.728971 CATCACCGACAGAAGCAACTC 59.271 52.381 0.00 0.00 0.00 3.01
52 53 3.181520 GGACCTTGATGATGTCGTTTTCG 60.182 47.826 0.00 0.00 45.64 3.46
98 99 4.982295 CAGGACGATTTGTAAGCGATGATA 59.018 41.667 3.96 0.00 44.20 2.15
129 130 4.084537 CGACATAGCCATTGAATTCGGTAC 60.085 45.833 0.04 0.00 0.00 3.34
168 169 3.318557 GGTTTCCCCGTGTTTTGTTATGA 59.681 43.478 0.00 0.00 0.00 2.15
169 170 3.553302 GGGTTTCCCCGTGTTTTGTTATG 60.553 47.826 0.00 0.00 42.41 1.90
171 172 2.030371 GGGTTTCCCCGTGTTTTGTTA 58.970 47.619 0.00 0.00 42.41 2.41
189 190 2.267961 GGCTCGTGTGGGTTAGGG 59.732 66.667 0.00 0.00 0.00 3.53
201 202 3.795638 GCCTTCGTTTAGGGCTCG 58.204 61.111 0.00 0.00 42.31 5.03
204 205 1.814169 CCGAGCCTTCGTTTAGGGC 60.814 63.158 0.00 0.00 45.28 5.19
213 214 1.811679 GTAGTGCTGCCGAGCCTTC 60.812 63.158 0.00 0.00 45.57 3.46
218 219 0.244994 ACTCTTGTAGTGCTGCCGAG 59.755 55.000 0.00 0.00 36.93 4.63
220 221 4.996976 ACTCTTGTAGTGCTGCCG 57.003 55.556 0.00 0.00 36.93 5.69
237 238 4.278513 CGGGGTGAACAAGGGGCA 62.279 66.667 0.00 0.00 0.00 5.36
238 239 3.920093 CTCGGGGTGAACAAGGGGC 62.920 68.421 0.00 0.00 0.00 5.80
253 254 0.944311 CACGGTTGTCCCTTCACTCG 60.944 60.000 0.00 0.00 0.00 4.18
326 327 1.608046 CCCCTCTCGCTAGGATCCC 60.608 68.421 8.55 0.00 39.15 3.85
356 357 7.391554 TCTTGAAGCTGCTAATAACAATTCTGT 59.608 33.333 0.90 0.00 37.39 3.41
357 358 7.755591 TCTTGAAGCTGCTAATAACAATTCTG 58.244 34.615 0.90 0.00 0.00 3.02
367 368 2.417933 CGCAACTCTTGAAGCTGCTAAT 59.582 45.455 0.90 0.00 43.54 1.73
372 373 1.331756 ACAACGCAACTCTTGAAGCTG 59.668 47.619 0.00 0.00 0.00 4.24
379 380 2.158957 TCTTCCTCACAACGCAACTCTT 60.159 45.455 0.00 0.00 0.00 2.85
395 396 7.992754 ATCTTTGGTATGCTATCATTCTTCC 57.007 36.000 0.00 0.00 34.22 3.46
401 402 8.000709 TCCTTTGAATCTTTGGTATGCTATCAT 58.999 33.333 0.00 0.00 36.73 2.45
523 541 5.105351 CCAACTCCCTTTGTTTTGGATATCC 60.105 44.000 15.39 15.39 39.33 2.59
535 553 4.322953 CCAATGAAATCCCAACTCCCTTTG 60.323 45.833 0.00 0.00 0.00 2.77
561 579 7.596248 TCTGTGCTGCATCTTCTTTAAAAATTC 59.404 33.333 5.27 0.00 0.00 2.17
565 583 5.048504 CCTCTGTGCTGCATCTTCTTTAAAA 60.049 40.000 5.27 0.00 0.00 1.52
589 607 6.504398 AGTGCTTAGTTTAGCCTTTTGTTTC 58.496 36.000 0.00 0.00 40.49 2.78
594 612 6.873997 ACAAAAGTGCTTAGTTTAGCCTTTT 58.126 32.000 13.85 13.85 43.87 2.27
598 616 6.270064 TCAAACAAAAGTGCTTAGTTTAGCC 58.730 36.000 12.05 0.00 40.49 3.93
640 659 2.281761 CTCCCAAAGCGTGTGCCT 60.282 61.111 0.00 0.00 44.31 4.75
672 693 5.846203 TGCCAAAAGGAAAGAATCTTCAAG 58.154 37.500 0.00 0.00 0.00 3.02
685 706 1.832167 GGTGCACCTGCCAAAAGGA 60.832 57.895 29.12 0.00 40.02 3.36
696 717 3.998341 TGAAAAATACTAGTCGGTGCACC 59.002 43.478 26.78 26.78 0.00 5.01
697 718 5.121768 ACATGAAAAATACTAGTCGGTGCAC 59.878 40.000 8.80 8.80 0.00 4.57
701 722 6.815142 GGTGTACATGAAAAATACTAGTCGGT 59.185 38.462 0.00 0.00 0.00 4.69
705 726 8.879759 CGAATGGTGTACATGAAAAATACTAGT 58.120 33.333 0.00 0.00 40.44 2.57
752 773 8.339714 TCCGAACCAAAATATTTAAATCTAGCG 58.660 33.333 3.39 0.00 0.00 4.26
759 780 8.866970 ACTACCTCCGAACCAAAATATTTAAA 57.133 30.769 0.01 0.00 0.00 1.52
797 818 6.980416 ACTACTCACACTAGAAGGACTTTT 57.020 37.500 0.00 0.00 0.00 2.27
798 819 7.504911 TGTTACTACTCACACTAGAAGGACTTT 59.495 37.037 0.00 0.00 0.00 2.66
799 820 7.002879 TGTTACTACTCACACTAGAAGGACTT 58.997 38.462 0.00 0.00 0.00 3.01
800 821 6.540995 TGTTACTACTCACACTAGAAGGACT 58.459 40.000 0.00 0.00 0.00 3.85
820 841 9.841880 CGTATAAGAGCTATTCTGCTATTGTTA 57.158 33.333 0.00 0.00 43.23 2.41
821 842 7.329717 GCGTATAAGAGCTATTCTGCTATTGTT 59.670 37.037 0.00 0.00 43.23 2.83
822 843 6.809196 GCGTATAAGAGCTATTCTGCTATTGT 59.191 38.462 0.00 3.11 43.23 2.71
823 844 6.021074 CGCGTATAAGAGCTATTCTGCTATTG 60.021 42.308 0.00 0.00 43.23 1.90
824 845 6.030849 CGCGTATAAGAGCTATTCTGCTATT 58.969 40.000 0.00 2.12 45.03 1.73
825 846 5.354513 TCGCGTATAAGAGCTATTCTGCTAT 59.645 40.000 5.77 0.00 44.17 2.97
826 847 4.694037 TCGCGTATAAGAGCTATTCTGCTA 59.306 41.667 5.77 0.00 44.17 3.49
828 849 3.822996 TCGCGTATAAGAGCTATTCTGC 58.177 45.455 5.77 0.00 35.91 4.26
829 850 8.449085 TTTTATCGCGTATAAGAGCTATTCTG 57.551 34.615 5.77 0.00 35.91 3.02
854 875 8.749354 TCTTTTTAGGAAAACAGAGAGCTTTTT 58.251 29.630 0.00 0.00 31.72 1.94
940 970 1.308069 CCTGCTCGACACCAAATGGG 61.308 60.000 4.17 0.00 44.81 4.00
941 971 1.926511 GCCTGCTCGACACCAAATGG 61.927 60.000 0.00 0.00 42.17 3.16
943 973 0.957395 CTGCCTGCTCGACACCAAAT 60.957 55.000 0.00 0.00 0.00 2.32
944 974 1.597854 CTGCCTGCTCGACACCAAA 60.598 57.895 0.00 0.00 0.00 3.28
945 975 2.031012 CTGCCTGCTCGACACCAA 59.969 61.111 0.00 0.00 0.00 3.67
1175 1212 2.385803 GTTGAAGACGGGGAGGATAGA 58.614 52.381 0.00 0.00 0.00 1.98
1183 1220 2.264794 CGGAGGTTGAAGACGGGG 59.735 66.667 0.00 0.00 0.00 5.73
1205 1247 3.125658 GGCTGGTACGCTATTTCGAAAAA 59.874 43.478 15.66 0.00 0.00 1.94
1233 1279 3.912899 CCAAAACAGATTGGTGGGC 57.087 52.632 0.00 0.00 43.99 5.36
1243 1289 1.401409 CCGCTGCATACACCAAAACAG 60.401 52.381 0.00 0.00 0.00 3.16
1244 1290 0.595588 CCGCTGCATACACCAAAACA 59.404 50.000 0.00 0.00 0.00 2.83
1367 1434 3.471806 GACGGAAGGGGAGGAGGC 61.472 72.222 0.00 0.00 0.00 4.70
1368 1435 2.930777 ATCGACGGAAGGGGAGGAGG 62.931 65.000 0.00 0.00 0.00 4.30
1369 1436 1.043673 AATCGACGGAAGGGGAGGAG 61.044 60.000 0.00 0.00 0.00 3.69
1370 1437 1.001248 AATCGACGGAAGGGGAGGA 59.999 57.895 0.00 0.00 0.00 3.71
1371 1438 1.043673 AGAATCGACGGAAGGGGAGG 61.044 60.000 0.00 0.00 0.00 4.30
1372 1439 0.824759 AAGAATCGACGGAAGGGGAG 59.175 55.000 0.00 0.00 0.00 4.30
1398 1465 2.436109 GGGTTCCTGCAGGCAGAA 59.564 61.111 28.91 14.73 46.30 3.02
1514 1581 4.467769 AGGAAATCTATCAGCACAATGGG 58.532 43.478 0.00 0.00 0.00 4.00
1529 1596 6.484977 CCTAATAACTGAGGCTCAAGGAAATC 59.515 42.308 21.01 0.00 0.00 2.17
1538 1605 4.984146 AATCCCCTAATAACTGAGGCTC 57.016 45.455 7.79 7.79 0.00 4.70
1677 1745 7.592938 TCACACATTGAGAACCATGATTAAAC 58.407 34.615 0.00 0.00 0.00 2.01
1804 1879 5.990386 CCATATGTGAGAAAGATCTGAGGTG 59.010 44.000 0.00 0.00 35.54 4.00
1805 1880 5.901853 TCCATATGTGAGAAAGATCTGAGGT 59.098 40.000 0.00 0.00 35.54 3.85
1994 2072 6.377146 ACAACTTAGAACATTTGTGGAACTGT 59.623 34.615 0.00 0.00 38.04 3.55
1995 2073 6.795399 ACAACTTAGAACATTTGTGGAACTG 58.205 36.000 0.00 0.00 38.04 3.16
1997 2075 9.821662 GTATACAACTTAGAACATTTGTGGAAC 57.178 33.333 0.00 0.00 34.15 3.62
2006 2084 9.909644 GGACATATCGTATACAACTTAGAACAT 57.090 33.333 3.32 0.00 0.00 2.71
2018 2096 7.201444 GCATAAGCACAAGGACATATCGTATAC 60.201 40.741 0.00 0.00 41.58 1.47
2033 2111 3.071874 ACTAAGCCAGCATAAGCACAA 57.928 42.857 0.00 0.00 45.49 3.33
2058 2136 9.906660 GTCAATTCCATAACATCAACTAAAACA 57.093 29.630 0.00 0.00 0.00 2.83
2059 2137 9.906660 TGTCAATTCCATAACATCAACTAAAAC 57.093 29.630 0.00 0.00 0.00 2.43
2084 2162 2.039818 AGATGATTGCACCTCAGCTG 57.960 50.000 13.77 7.63 37.93 4.24
2092 2170 3.918591 CACTGCAGAAAAGATGATTGCAC 59.081 43.478 23.35 0.00 39.61 4.57
2097 2175 4.008330 CAGGACACTGCAGAAAAGATGAT 58.992 43.478 23.35 0.00 38.01 2.45
2149 2227 5.279708 CCAATGGTGTCTGTAGAACTCTTCT 60.280 44.000 0.00 0.00 43.72 2.85
2175 2253 5.048713 ACAAAGGTTCTTTGTGATCGAATCC 60.049 40.000 20.81 0.00 40.70 3.01
2181 2259 4.022849 CCCAGACAAAGGTTCTTTGTGATC 60.023 45.833 24.84 13.85 42.11 2.92
2223 2301 8.680903 AGAATAGTTTGCATGAAAATGGTAGAG 58.319 33.333 1.18 0.00 0.00 2.43
2229 2307 8.752766 AACAGAGAATAGTTTGCATGAAAATG 57.247 30.769 1.18 0.00 0.00 2.32
2300 2378 6.655078 AAGCTAAACAGTCATTGGACAAAT 57.345 33.333 0.00 0.00 46.80 2.32
2320 2398 0.746659 AAACAGTGACTGGCCAAAGC 59.253 50.000 17.92 0.00 35.51 3.51
2324 2402 1.846007 AACAAAACAGTGACTGGCCA 58.154 45.000 17.92 4.71 35.51 5.36
2336 2414 8.391106 CCATCATACAGCTAGAACTAACAAAAC 58.609 37.037 0.00 0.00 0.00 2.43
2360 2438 8.052141 TCAGTCAATAAAACATCCATCATACCA 58.948 33.333 0.00 0.00 0.00 3.25
2377 2455 6.126409 ACACTTTTTCAGGGTTCAGTCAATA 58.874 36.000 0.00 0.00 34.25 1.90
2386 2464 5.382664 TTCTAGGACACTTTTTCAGGGTT 57.617 39.130 0.00 0.00 40.35 4.11
2415 2493 0.456653 CGCCTGCAACATGCTTTACC 60.457 55.000 3.78 0.00 45.31 2.85
2467 2545 7.348274 AGGATCCCTCAAGAACATTATTCTGTA 59.652 37.037 8.55 0.00 0.00 2.74
2481 2559 6.485830 TGATGTACTTTAGGATCCCTCAAG 57.514 41.667 8.55 10.63 39.84 3.02
2591 2670 5.990120 ACATGAAGGCAAGAATAAGCTTT 57.010 34.783 3.20 0.00 32.40 3.51
2654 2733 6.770286 AGAGGCTGGGAAATTATTATCAGA 57.230 37.500 0.00 0.00 0.00 3.27
2661 2740 4.729552 TGCATAGAGGCTGGGAAATTAT 57.270 40.909 0.00 0.00 34.04 1.28
2717 2796 7.119699 TGTCTGAATAGTAATTTTGCACTGGAG 59.880 37.037 0.00 0.00 0.00 3.86
2744 2823 7.811117 TTTGTCGAAGATAAAGAAAAGGGAA 57.189 32.000 0.00 0.00 42.48 3.97
2773 2852 8.380099 TGTTAAACTCCCTACATAATCAACACT 58.620 33.333 0.00 0.00 0.00 3.55
2799 2878 4.042187 AGAGTACTTGACCTGCCTTTGAAT 59.958 41.667 0.00 0.00 0.00 2.57
2809 2888 3.136626 ACTTGCCAAAGAGTACTTGACCT 59.863 43.478 0.00 0.00 36.84 3.85
2825 2904 5.886960 ATAAAGTGAGATGTCAACTTGCC 57.113 39.130 0.00 0.00 33.27 4.52
2851 2930 8.432013 TCTGATTGTACAAGCACCTATATCAAT 58.568 33.333 21.98 0.00 32.79 2.57
2855 2934 7.658982 CACATCTGATTGTACAAGCACCTATAT 59.341 37.037 21.98 8.36 32.79 0.86
2890 2969 4.093011 ACCTTTCTCTCATGTCTGTAGCT 58.907 43.478 0.00 0.00 0.00 3.32
2924 3003 0.799534 GCATGCTCAAACACATCCGC 60.800 55.000 11.37 0.00 0.00 5.54
3016 3095 2.438763 CTCAGCATGGATTTCCCTCTCT 59.561 50.000 0.00 0.00 36.16 3.10
3040 3119 2.028930 CCTGTATATGGTCGCTCCTTCC 60.029 54.545 0.00 0.00 37.07 3.46
3079 3158 6.045955 GGAGTAATCTGGTGAGAAACATCTC 58.954 44.000 0.00 0.00 37.27 2.75
3210 3289 5.705609 TCACTAAGAATTTGCTTTGGGAC 57.294 39.130 0.00 0.00 30.12 4.46
3307 3386 6.519382 TCAAGCAGAACGATGATCTCATATT 58.481 36.000 0.00 0.00 36.57 1.28
3310 3389 4.370049 CTCAAGCAGAACGATGATCTCAT 58.630 43.478 0.00 0.00 39.70 2.90
3327 3406 4.153835 GCACTGTGATCTTTCTTCCTCAAG 59.846 45.833 12.86 0.00 0.00 3.02
3355 3434 6.183360 CCTCGTGTATGGTTAACACTGAAATC 60.183 42.308 8.10 0.00 44.05 2.17
3456 3535 4.523943 AGACAATGCTCTTAATTGCCAACA 59.476 37.500 0.00 0.00 38.36 3.33
3519 3618 4.698276 CAAAGTTTCGTTACATCCAGTCG 58.302 43.478 0.00 0.00 0.00 4.18
3521 3620 4.134563 AGCAAAGTTTCGTTACATCCAGT 58.865 39.130 0.00 0.00 0.00 4.00
3523 3622 4.385825 AGAGCAAAGTTTCGTTACATCCA 58.614 39.130 0.00 0.00 0.00 3.41
3525 3624 5.177696 ACTGAGAGCAAAGTTTCGTTACATC 59.822 40.000 0.00 0.00 0.00 3.06
3532 3631 1.069636 GCCACTGAGAGCAAAGTTTCG 60.070 52.381 0.00 0.00 0.00 3.46
3555 3654 1.308998 AATCGCCCATCCATCGTTTC 58.691 50.000 0.00 0.00 0.00 2.78
3577 3676 4.193090 TCTTACAAGAACCAGTGCGAAAA 58.807 39.130 0.00 0.00 30.73 2.29
3611 3710 0.725784 AACATTTTTCGCGCGCAGAG 60.726 50.000 32.61 15.52 0.00 3.35
3686 3785 8.971321 GTGCAATATCAACCAAATCAATATCAC 58.029 33.333 0.00 0.00 0.00 3.06
3701 3800 2.368439 GAGGCTGTGGTGCAATATCAA 58.632 47.619 0.00 0.00 34.04 2.57
3736 3840 3.099905 TCAGTTAGGTGTCTCCAGATGG 58.900 50.000 0.00 0.00 39.02 3.51
3752 3856 4.762289 AAGACAGAAGGTGAAGTCAGTT 57.238 40.909 0.00 0.00 33.56 3.16
3785 3889 4.977963 CACACATGTTTAGTTCAGCAAAGG 59.022 41.667 0.00 0.00 0.00 3.11
3786 3890 5.581605 ACACACATGTTTAGTTCAGCAAAG 58.418 37.500 0.00 0.00 34.46 2.77
3822 3926 5.470047 AAACAGGACAGGAAGTACTACTG 57.530 43.478 20.17 20.17 40.32 2.74
3867 3971 9.102757 TGTTGAGATTTAATAGAGCTGCTTTAG 57.897 33.333 2.53 0.00 0.00 1.85
3868 3972 9.102757 CTGTTGAGATTTAATAGAGCTGCTTTA 57.897 33.333 2.53 2.30 0.00 1.85
3869 3973 7.826252 TCTGTTGAGATTTAATAGAGCTGCTTT 59.174 33.333 2.53 0.00 0.00 3.51
3870 3974 7.334090 TCTGTTGAGATTTAATAGAGCTGCTT 58.666 34.615 2.53 0.00 0.00 3.91
3871 3975 6.882656 TCTGTTGAGATTTAATAGAGCTGCT 58.117 36.000 0.00 0.00 0.00 4.24
3872 3976 7.727331 ATCTGTTGAGATTTAATAGAGCTGC 57.273 36.000 0.00 0.00 35.15 5.25
3883 3987 9.753674 TTTGTATCCCTTTATCTGTTGAGATTT 57.246 29.630 0.00 0.00 39.76 2.17
3884 3988 9.178758 GTTTGTATCCCTTTATCTGTTGAGATT 57.821 33.333 0.00 0.00 39.76 2.40
3885 3989 8.552296 AGTTTGTATCCCTTTATCTGTTGAGAT 58.448 33.333 0.00 0.00 42.03 2.75
3886 3990 7.918076 AGTTTGTATCCCTTTATCTGTTGAGA 58.082 34.615 0.00 0.00 0.00 3.27
3887 3991 9.838339 ATAGTTTGTATCCCTTTATCTGTTGAG 57.162 33.333 0.00 0.00 0.00 3.02
3888 3992 9.613428 CATAGTTTGTATCCCTTTATCTGTTGA 57.387 33.333 0.00 0.00 0.00 3.18
3889 3993 9.396022 ACATAGTTTGTATCCCTTTATCTGTTG 57.604 33.333 0.00 0.00 36.57 3.33
3890 3994 9.614792 GACATAGTTTGTATCCCTTTATCTGTT 57.385 33.333 0.00 0.00 39.18 3.16
3891 3995 8.768397 TGACATAGTTTGTATCCCTTTATCTGT 58.232 33.333 0.00 0.00 39.18 3.41
3892 3996 9.265901 CTGACATAGTTTGTATCCCTTTATCTG 57.734 37.037 0.00 0.00 39.18 2.90
3893 3997 8.432805 CCTGACATAGTTTGTATCCCTTTATCT 58.567 37.037 0.00 0.00 39.18 1.98
3894 3998 8.211629 ACCTGACATAGTTTGTATCCCTTTATC 58.788 37.037 0.00 0.00 39.18 1.75
3895 3999 8.102484 ACCTGACATAGTTTGTATCCCTTTAT 57.898 34.615 0.00 0.00 39.18 1.40
3896 4000 7.402071 AGACCTGACATAGTTTGTATCCCTTTA 59.598 37.037 0.00 0.00 39.18 1.85
3897 4001 6.215636 AGACCTGACATAGTTTGTATCCCTTT 59.784 38.462 0.00 0.00 39.18 3.11
3898 4002 5.726793 AGACCTGACATAGTTTGTATCCCTT 59.273 40.000 0.00 0.00 39.18 3.95
3899 4003 5.281314 AGACCTGACATAGTTTGTATCCCT 58.719 41.667 0.00 0.00 39.18 4.20
3900 4004 5.615925 AGACCTGACATAGTTTGTATCCC 57.384 43.478 0.00 0.00 39.18 3.85
3901 4005 6.539103 GGAAAGACCTGACATAGTTTGTATCC 59.461 42.308 0.00 0.00 35.52 2.59
3902 4006 6.255887 CGGAAAGACCTGACATAGTTTGTATC 59.744 42.308 0.00 0.00 36.00 2.24
3903 4007 6.106673 CGGAAAGACCTGACATAGTTTGTAT 58.893 40.000 0.00 0.00 36.00 2.29
3904 4008 5.011329 ACGGAAAGACCTGACATAGTTTGTA 59.989 40.000 0.00 0.00 36.00 2.41
3905 4009 4.202326 ACGGAAAGACCTGACATAGTTTGT 60.202 41.667 0.00 0.00 37.68 2.83
3906 4010 4.315803 ACGGAAAGACCTGACATAGTTTG 58.684 43.478 0.00 0.00 36.31 2.93
3907 4011 4.618920 ACGGAAAGACCTGACATAGTTT 57.381 40.909 0.00 0.00 36.31 2.66
3908 4012 4.618920 AACGGAAAGACCTGACATAGTT 57.381 40.909 0.00 0.00 36.31 2.24
3909 4013 4.381718 GCTAACGGAAAGACCTGACATAGT 60.382 45.833 0.00 0.00 36.31 2.12
3910 4014 4.113354 GCTAACGGAAAGACCTGACATAG 58.887 47.826 0.00 0.00 36.31 2.23
3911 4015 3.118884 GGCTAACGGAAAGACCTGACATA 60.119 47.826 0.00 0.00 36.31 2.29
3912 4016 2.354805 GGCTAACGGAAAGACCTGACAT 60.355 50.000 0.00 0.00 36.31 3.06
3913 4017 1.001633 GGCTAACGGAAAGACCTGACA 59.998 52.381 0.00 0.00 36.31 3.58
3914 4018 1.001633 TGGCTAACGGAAAGACCTGAC 59.998 52.381 0.00 0.00 36.31 3.51
3915 4019 1.344065 TGGCTAACGGAAAGACCTGA 58.656 50.000 0.00 0.00 36.31 3.86
3916 4020 2.178912 TTGGCTAACGGAAAGACCTG 57.821 50.000 0.00 0.00 36.31 4.00
3917 4021 2.370849 TCTTTGGCTAACGGAAAGACCT 59.629 45.455 0.00 0.00 32.13 3.85
3918 4022 2.774687 TCTTTGGCTAACGGAAAGACC 58.225 47.619 0.00 0.00 32.13 3.85
3919 4023 3.127030 CCATCTTTGGCTAACGGAAAGAC 59.873 47.826 0.00 0.00 38.26 3.01
3920 4024 3.343617 CCATCTTTGGCTAACGGAAAGA 58.656 45.455 0.00 0.00 39.42 2.52
3921 4025 3.764885 CCATCTTTGGCTAACGGAAAG 57.235 47.619 0.00 0.00 35.85 2.62
3943 4047 4.468689 CTTCCTTCGCCCCGGGAC 62.469 72.222 26.32 10.46 0.00 4.46
3945 4049 4.029809 AACTTCCTTCGCCCCGGG 62.030 66.667 15.80 15.80 0.00 5.73
3946 4050 2.746277 CAACTTCCTTCGCCCCGG 60.746 66.667 0.00 0.00 0.00 5.73
3947 4051 3.431725 GCAACTTCCTTCGCCCCG 61.432 66.667 0.00 0.00 0.00 5.73
3948 4052 2.282180 TGCAACTTCCTTCGCCCC 60.282 61.111 0.00 0.00 0.00 5.80
3949 4053 2.982744 GCTGCAACTTCCTTCGCCC 61.983 63.158 0.00 0.00 0.00 6.13
3950 4054 1.518903 AAGCTGCAACTTCCTTCGCC 61.519 55.000 1.02 0.00 0.00 5.54
3951 4055 0.312102 AAAGCTGCAACTTCCTTCGC 59.688 50.000 2.20 0.00 0.00 4.70
3952 4056 2.413371 GCTAAAGCTGCAACTTCCTTCG 60.413 50.000 2.20 0.00 38.21 3.79
3953 4057 2.554032 TGCTAAAGCTGCAACTTCCTTC 59.446 45.455 2.20 0.00 42.66 3.46
3954 4058 2.586425 TGCTAAAGCTGCAACTTCCTT 58.414 42.857 2.20 0.00 42.66 3.36
3955 4059 2.276732 TGCTAAAGCTGCAACTTCCT 57.723 45.000 2.20 0.00 42.66 3.36
3956 4060 2.554032 TCTTGCTAAAGCTGCAACTTCC 59.446 45.455 2.20 0.00 44.24 3.46
3957 4061 3.499918 TCTCTTGCTAAAGCTGCAACTTC 59.500 43.478 2.20 0.00 44.24 3.01
3958 4062 3.480470 TCTCTTGCTAAAGCTGCAACTT 58.520 40.909 5.88 0.00 44.24 2.66
3959 4063 3.131709 TCTCTTGCTAAAGCTGCAACT 57.868 42.857 5.88 0.00 44.24 3.16
3960 4064 3.904136 TTCTCTTGCTAAAGCTGCAAC 57.096 42.857 5.88 0.00 44.24 4.17
3961 4065 4.074259 TCATTCTCTTGCTAAAGCTGCAA 58.926 39.130 9.35 9.35 46.48 4.08
3962 4066 3.678289 TCATTCTCTTGCTAAAGCTGCA 58.322 40.909 1.02 0.00 42.66 4.41
3963 4067 3.487209 GCTCATTCTCTTGCTAAAGCTGC 60.487 47.826 3.26 0.00 42.66 5.25
3964 4068 3.940221 AGCTCATTCTCTTGCTAAAGCTG 59.060 43.478 3.26 0.00 42.66 4.24
3965 4069 4.219264 AGCTCATTCTCTTGCTAAAGCT 57.781 40.909 3.26 0.00 42.66 3.74
3966 4070 4.201901 GGAAGCTCATTCTCTTGCTAAAGC 60.202 45.833 0.00 0.00 38.07 3.51
3967 4071 5.184711 AGGAAGCTCATTCTCTTGCTAAAG 58.815 41.667 0.00 0.00 38.84 1.85
3968 4072 5.171339 AGGAAGCTCATTCTCTTGCTAAA 57.829 39.130 0.00 0.00 38.84 1.85
3969 4073 4.833478 AGGAAGCTCATTCTCTTGCTAA 57.167 40.909 0.00 0.00 38.84 3.09
3970 4074 4.833478 AAGGAAGCTCATTCTCTTGCTA 57.167 40.909 0.00 0.00 39.53 3.49
3971 4075 3.717452 AAGGAAGCTCATTCTCTTGCT 57.283 42.857 0.00 0.00 41.69 3.91
3972 4076 6.540189 TGTAATAAGGAAGCTCATTCTCTTGC 59.460 38.462 0.00 0.00 38.07 4.01
3973 4077 7.254727 GCTGTAATAAGGAAGCTCATTCTCTTG 60.255 40.741 0.00 0.00 38.07 3.02
3974 4078 6.765512 GCTGTAATAAGGAAGCTCATTCTCTT 59.234 38.462 0.00 0.00 38.07 2.85
3975 4079 6.287525 GCTGTAATAAGGAAGCTCATTCTCT 58.712 40.000 0.00 0.00 38.07 3.10
3976 4080 5.468409 GGCTGTAATAAGGAAGCTCATTCTC 59.532 44.000 0.00 0.00 38.07 2.87
3977 4081 5.104360 TGGCTGTAATAAGGAAGCTCATTCT 60.104 40.000 0.00 0.00 38.07 2.40
3978 4082 5.126067 TGGCTGTAATAAGGAAGCTCATTC 58.874 41.667 0.00 0.00 35.93 2.67
3979 4083 5.116084 TGGCTGTAATAAGGAAGCTCATT 57.884 39.130 0.00 0.00 35.93 2.57
3980 4084 4.778213 TGGCTGTAATAAGGAAGCTCAT 57.222 40.909 0.00 0.00 35.93 2.90
3981 4085 4.164030 TCATGGCTGTAATAAGGAAGCTCA 59.836 41.667 0.00 0.00 35.93 4.26
3982 4086 4.708177 TCATGGCTGTAATAAGGAAGCTC 58.292 43.478 0.00 0.00 35.93 4.09
3983 4087 4.164988 ACTCATGGCTGTAATAAGGAAGCT 59.835 41.667 0.00 0.00 35.93 3.74
3984 4088 4.455606 ACTCATGGCTGTAATAAGGAAGC 58.544 43.478 0.00 0.00 34.86 3.86
3985 4089 6.599244 TGAAACTCATGGCTGTAATAAGGAAG 59.401 38.462 0.00 0.00 0.00 3.46
3986 4090 6.480763 TGAAACTCATGGCTGTAATAAGGAA 58.519 36.000 0.00 0.00 0.00 3.36
3987 4091 6.061022 TGAAACTCATGGCTGTAATAAGGA 57.939 37.500 0.00 0.00 0.00 3.36
3988 4092 6.949352 ATGAAACTCATGGCTGTAATAAGG 57.051 37.500 0.00 0.00 35.43 2.69
4001 4105 9.730705 TCTTCAGACTTAATTCATGAAACTCAT 57.269 29.630 13.09 0.00 37.65 2.90
4002 4106 9.559732 TTCTTCAGACTTAATTCATGAAACTCA 57.440 29.630 13.09 0.00 30.10 3.41
4015 4119 9.559732 TCTTGATGTTCAATTCTTCAGACTTAA 57.440 29.630 0.00 0.00 35.59 1.85
4016 4120 9.212641 CTCTTGATGTTCAATTCTTCAGACTTA 57.787 33.333 0.00 0.00 35.59 2.24
4017 4121 7.308469 GCTCTTGATGTTCAATTCTTCAGACTT 60.308 37.037 0.00 0.00 35.59 3.01
4018 4122 6.149142 GCTCTTGATGTTCAATTCTTCAGACT 59.851 38.462 0.00 0.00 35.59 3.24
4019 4123 6.149142 AGCTCTTGATGTTCAATTCTTCAGAC 59.851 38.462 0.00 0.00 35.59 3.51
4020 4124 6.236409 AGCTCTTGATGTTCAATTCTTCAGA 58.764 36.000 0.00 0.00 35.59 3.27
4021 4125 6.497785 AGCTCTTGATGTTCAATTCTTCAG 57.502 37.500 0.00 0.00 35.59 3.02
4022 4126 6.294342 CCAAGCTCTTGATGTTCAATTCTTCA 60.294 38.462 10.94 0.00 42.93 3.02
4023 4127 6.072286 TCCAAGCTCTTGATGTTCAATTCTTC 60.072 38.462 10.94 0.00 42.93 2.87
4024 4128 5.771666 TCCAAGCTCTTGATGTTCAATTCTT 59.228 36.000 10.94 0.00 42.93 2.52
4025 4129 5.182760 GTCCAAGCTCTTGATGTTCAATTCT 59.817 40.000 10.94 0.00 42.93 2.40
4026 4130 5.182760 AGTCCAAGCTCTTGATGTTCAATTC 59.817 40.000 10.94 0.00 42.93 2.17
4027 4131 5.075493 AGTCCAAGCTCTTGATGTTCAATT 58.925 37.500 10.94 0.00 42.93 2.32
4028 4132 4.660168 AGTCCAAGCTCTTGATGTTCAAT 58.340 39.130 10.94 0.00 42.93 2.57
4029 4133 4.090761 AGTCCAAGCTCTTGATGTTCAA 57.909 40.909 10.94 0.00 42.93 2.69
4030 4134 3.777106 AGTCCAAGCTCTTGATGTTCA 57.223 42.857 10.94 0.00 42.93 3.18
4031 4135 4.067896 TCAAGTCCAAGCTCTTGATGTTC 58.932 43.478 10.63 0.00 43.02 3.18
4032 4136 4.090761 TCAAGTCCAAGCTCTTGATGTT 57.909 40.909 10.63 0.00 43.02 2.71
4033 4137 3.777106 TCAAGTCCAAGCTCTTGATGT 57.223 42.857 10.63 0.00 43.02 3.06
4037 4141 3.055240 AGGAGATCAAGTCCAAGCTCTTG 60.055 47.826 6.56 6.56 41.36 3.02
4038 4142 3.180507 AGGAGATCAAGTCCAAGCTCTT 58.819 45.455 0.00 0.00 36.43 2.85
4039 4143 2.765699 GAGGAGATCAAGTCCAAGCTCT 59.234 50.000 0.00 0.00 36.43 4.09
4040 4144 2.158971 GGAGGAGATCAAGTCCAAGCTC 60.159 54.545 0.00 0.00 36.43 4.09
4041 4145 1.836802 GGAGGAGATCAAGTCCAAGCT 59.163 52.381 0.00 0.00 36.43 3.74
4042 4146 1.556911 TGGAGGAGATCAAGTCCAAGC 59.443 52.381 7.32 0.00 36.11 4.01
4043 4147 2.093235 GGTGGAGGAGATCAAGTCCAAG 60.093 54.545 10.57 0.00 40.79 3.61
4044 4148 1.909302 GGTGGAGGAGATCAAGTCCAA 59.091 52.381 10.57 0.00 40.79 3.53
4045 4149 1.203300 TGGTGGAGGAGATCAAGTCCA 60.203 52.381 5.97 5.97 36.43 4.02
4046 4150 1.208293 GTGGTGGAGGAGATCAAGTCC 59.792 57.143 0.00 0.00 0.00 3.85
4047 4151 1.208293 GGTGGTGGAGGAGATCAAGTC 59.792 57.143 0.00 0.00 0.00 3.01
4048 4152 1.280457 GGTGGTGGAGGAGATCAAGT 58.720 55.000 0.00 0.00 0.00 3.16
4049 4153 1.065854 GTGGTGGTGGAGGAGATCAAG 60.066 57.143 0.00 0.00 0.00 3.02
4050 4154 0.984230 GTGGTGGTGGAGGAGATCAA 59.016 55.000 0.00 0.00 0.00 2.57
4051 4155 0.909610 GGTGGTGGTGGAGGAGATCA 60.910 60.000 0.00 0.00 0.00 2.92
4052 4156 0.909610 TGGTGGTGGTGGAGGAGATC 60.910 60.000 0.00 0.00 0.00 2.75
4053 4157 0.253347 ATGGTGGTGGTGGAGGAGAT 60.253 55.000 0.00 0.00 0.00 2.75
4054 4158 0.415830 TATGGTGGTGGTGGAGGAGA 59.584 55.000 0.00 0.00 0.00 3.71
4055 4159 0.541863 GTATGGTGGTGGTGGAGGAG 59.458 60.000 0.00 0.00 0.00 3.69
4056 4160 0.118346 AGTATGGTGGTGGTGGAGGA 59.882 55.000 0.00 0.00 0.00 3.71
4057 4161 1.762957 CTAGTATGGTGGTGGTGGAGG 59.237 57.143 0.00 0.00 0.00 4.30
4058 4162 1.139058 GCTAGTATGGTGGTGGTGGAG 59.861 57.143 0.00 0.00 0.00 3.86
4059 4163 1.200519 GCTAGTATGGTGGTGGTGGA 58.799 55.000 0.00 0.00 0.00 4.02
4060 4164 0.179084 CGCTAGTATGGTGGTGGTGG 60.179 60.000 0.00 0.00 0.00 4.61
4061 4165 0.810031 GCGCTAGTATGGTGGTGGTG 60.810 60.000 0.00 0.00 0.00 4.17
4062 4166 1.520666 GCGCTAGTATGGTGGTGGT 59.479 57.895 0.00 0.00 0.00 4.16
4063 4167 1.227556 GGCGCTAGTATGGTGGTGG 60.228 63.158 7.64 0.00 0.00 4.61
4064 4168 1.227556 GGGCGCTAGTATGGTGGTG 60.228 63.158 7.64 0.00 0.00 4.17
4065 4169 1.686325 CTGGGCGCTAGTATGGTGGT 61.686 60.000 7.64 0.00 0.00 4.16
4066 4170 1.069765 CTGGGCGCTAGTATGGTGG 59.930 63.158 7.64 0.00 0.00 4.61
4067 4171 1.069765 CCTGGGCGCTAGTATGGTG 59.930 63.158 7.64 0.00 0.00 4.17
4068 4172 0.105862 TACCTGGGCGCTAGTATGGT 60.106 55.000 7.64 10.01 0.00 3.55
4069 4173 0.603569 CTACCTGGGCGCTAGTATGG 59.396 60.000 7.64 4.14 0.00 2.74
4070 4174 1.000163 CACTACCTGGGCGCTAGTATG 60.000 57.143 7.64 1.35 0.00 2.39
4071 4175 1.329256 CACTACCTGGGCGCTAGTAT 58.671 55.000 7.64 0.00 0.00 2.12
4072 4176 1.389609 GCACTACCTGGGCGCTAGTA 61.390 60.000 7.64 3.31 34.27 1.82
4073 4177 2.722201 GCACTACCTGGGCGCTAGT 61.722 63.158 7.64 3.57 34.27 2.57
4074 4178 2.107141 GCACTACCTGGGCGCTAG 59.893 66.667 7.64 6.28 34.27 3.42
4080 4184 2.505819 ACATTAAGGAGCACTACCTGGG 59.494 50.000 0.00 0.00 37.85 4.45
4081 4185 3.055094 ACACATTAAGGAGCACTACCTGG 60.055 47.826 0.00 0.00 37.85 4.45
4082 4186 4.207891 ACACATTAAGGAGCACTACCTG 57.792 45.455 0.00 0.00 37.85 4.00
4083 4187 4.910458 AACACATTAAGGAGCACTACCT 57.090 40.909 0.00 0.00 39.69 3.08
4084 4188 5.001232 TCAAACACATTAAGGAGCACTACC 58.999 41.667 0.00 0.00 0.00 3.18
4085 4189 5.468746 TGTCAAACACATTAAGGAGCACTAC 59.531 40.000 0.00 0.00 0.00 2.73
4086 4190 5.616270 TGTCAAACACATTAAGGAGCACTA 58.384 37.500 0.00 0.00 0.00 2.74
4087 4191 4.460263 TGTCAAACACATTAAGGAGCACT 58.540 39.130 0.00 0.00 0.00 4.40
4088 4192 4.275936 ACTGTCAAACACATTAAGGAGCAC 59.724 41.667 0.00 0.00 33.23 4.40
4089 4193 4.460263 ACTGTCAAACACATTAAGGAGCA 58.540 39.130 0.00 0.00 33.23 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.