Multiple sequence alignment - TraesCS2A01G463800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G463800 chr2A 100.000 2455 0 0 1 2455 709695333 709697787 0.000000e+00 4534.0
1 TraesCS2A01G463800 chr2A 100.000 1871 0 0 2583 4453 709697915 709699785 0.000000e+00 3456.0
2 TraesCS2A01G463800 chr2A 87.100 1000 123 3 2613 3606 709419807 709418808 0.000000e+00 1127.0
3 TraesCS2A01G463800 chr2A 83.220 1025 144 21 965 1983 709420857 709419855 0.000000e+00 915.0
4 TraesCS2A01G463800 chr2A 92.366 262 16 2 3933 4191 437870898 437870638 1.960000e-98 370.0
5 TraesCS2A01G463800 chr2A 83.849 291 23 3 4185 4453 709417250 709416962 5.720000e-64 255.0
6 TraesCS2A01G463800 chr2A 88.333 60 5 1 3874 3933 709417316 709417259 2.220000e-08 71.3
7 TraesCS2A01G463800 chrUn 98.771 1872 22 1 2583 4453 300837674 300835803 0.000000e+00 3328.0
8 TraesCS2A01G463800 chrUn 85.326 184 27 0 2004 2187 474546304 474546487 1.630000e-44 191.0
9 TraesCS2A01G463800 chrUn 83.889 180 27 2 2004 2182 81540460 81540638 2.130000e-38 171.0
10 TraesCS2A01G463800 chrUn 81.410 156 26 3 1999 2152 24887609 24887455 1.680000e-24 124.0
11 TraesCS2A01G463800 chrUn 79.245 159 17 5 1999 2157 469773871 469773729 3.670000e-16 97.1
12 TraesCS2A01G463800 chr7A 94.737 855 41 2 1 851 632666350 632667204 0.000000e+00 1327.0
13 TraesCS2A01G463800 chr7A 94.737 855 41 2 1 852 636903889 636904742 0.000000e+00 1327.0
14 TraesCS2A01G463800 chr7A 94.322 863 37 8 1 851 528302307 528301445 0.000000e+00 1312.0
15 TraesCS2A01G463800 chr7A 94.229 849 47 2 1 849 59015405 59014559 0.000000e+00 1295.0
16 TraesCS2A01G463800 chr7A 84.583 240 34 3 3041 3278 77522639 77522877 7.450000e-58 235.0
17 TraesCS2A01G463800 chr7A 88.482 191 20 2 1998 2188 109233175 109232987 3.460000e-56 230.0
18 TraesCS2A01G463800 chr7A 78.932 337 66 4 1059 1394 720985373 720985041 1.610000e-54 224.0
19 TraesCS2A01G463800 chr7A 74.074 405 77 18 1594 1980 77522236 77522630 1.670000e-29 141.0
20 TraesCS2A01G463800 chr5A 94.289 858 43 4 1 854 622760508 622759653 0.000000e+00 1308.0
21 TraesCS2A01G463800 chr5A 94.242 851 45 4 1 849 651536701 651535853 0.000000e+00 1297.0
22 TraesCS2A01G463800 chr5A 94.000 850 47 4 1 849 570491608 570490762 0.000000e+00 1284.0
23 TraesCS2A01G463800 chr5A 88.830 188 18 3 1999 2184 202925778 202925592 1.250000e-55 228.0
24 TraesCS2A01G463800 chr6A 94.097 847 42 6 6 849 21113150 21113991 0.000000e+00 1280.0
25 TraesCS2A01G463800 chr6A 93.130 262 14 1 3933 4190 105506439 105506700 9.040000e-102 381.0
26 TraesCS2A01G463800 chr4A 93.765 850 48 3 1 849 532358392 532359237 0.000000e+00 1271.0
27 TraesCS2A01G463800 chr4A 88.172 186 19 3 1999 2184 613256756 613256938 7.500000e-53 219.0
28 TraesCS2A01G463800 chr2B 84.580 882 130 3 2614 3491 682801109 682801988 0.000000e+00 870.0
29 TraesCS2A01G463800 chr2B 80.651 584 90 15 960 1539 682792688 682793252 8.850000e-117 431.0
30 TraesCS2A01G463800 chr2B 88.710 186 18 3 1999 2183 21408181 21407998 1.610000e-54 224.0
31 TraesCS2A01G463800 chr2B 96.667 60 2 0 3874 3933 682839702 682839761 2.830000e-17 100.0
32 TraesCS2A01G463800 chr7D 83.410 651 102 6 2630 3278 72387324 72387970 2.290000e-167 599.0
33 TraesCS2A01G463800 chr7D 77.210 939 184 23 1057 1980 72386327 72387250 5.100000e-144 521.0
34 TraesCS2A01G463800 chr7D 92.692 260 14 4 3933 4189 74957706 74957963 1.960000e-98 370.0
35 TraesCS2A01G463800 chr7D 92.337 261 15 2 3933 4189 415928340 415928599 2.530000e-97 366.0
36 TraesCS2A01G463800 chr7D 91.985 262 15 2 3933 4190 84571450 84571191 3.270000e-96 363.0
37 TraesCS2A01G463800 chr7D 81.034 348 60 4 1076 1420 625360172 625359828 5.680000e-69 272.0
38 TraesCS2A01G463800 chr1B 81.154 589 108 1 2699 3287 11937190 11937775 1.880000e-128 470.0
39 TraesCS2A01G463800 chr1B 87.766 188 22 1 1999 2186 381248457 381248643 7.500000e-53 219.0
40 TraesCS2A01G463800 chr1B 87.234 188 23 1 1999 2186 202276118 202276304 3.490000e-51 213.0
41 TraesCS2A01G463800 chr1B 87.234 188 23 1 1999 2186 225929691 225929877 3.490000e-51 213.0
42 TraesCS2A01G463800 chr1B 87.568 185 22 1 1999 2183 363733890 363733707 3.490000e-51 213.0
43 TraesCS2A01G463800 chr2D 92.308 260 16 2 3933 4189 331660772 331661030 2.530000e-97 366.0
44 TraesCS2A01G463800 chr1D 92.308 260 16 2 3933 4188 3869276 3869017 2.530000e-97 366.0
45 TraesCS2A01G463800 chr1D 88.827 179 20 0 2005 2183 439829949 439829771 2.090000e-53 220.0
46 TraesCS2A01G463800 chr1D 86.885 183 23 1 2000 2182 220842065 220842246 2.100000e-48 204.0
47 TraesCS2A01G463800 chr3B 91.635 263 18 2 3933 4192 236579628 236579367 1.180000e-95 361.0
48 TraesCS2A01G463800 chr3B 88.108 185 20 2 1999 2183 253075369 253075551 7.500000e-53 219.0
49 TraesCS2A01G463800 chr3B 87.831 189 20 3 1999 2186 470219677 470219491 7.500000e-53 219.0
50 TraesCS2A01G463800 chr7B 88.830 188 20 1 1999 2186 174175476 174175290 3.460000e-56 230.0
51 TraesCS2A01G463800 chr7B 87.302 189 21 3 1999 2186 36637643 36637457 3.490000e-51 213.0
52 TraesCS2A01G463800 chr3A 89.189 185 19 1 2000 2184 265758155 265757972 3.460000e-56 230.0
53 TraesCS2A01G463800 chr4B 88.108 185 22 0 1999 2183 333980157 333980341 2.090000e-53 220.0
54 TraesCS2A01G463800 chr4B 86.772 189 22 2 1999 2186 288542818 288543004 1.620000e-49 207.0
55 TraesCS2A01G463800 chr4B 86.702 188 24 1 1999 2186 547772740 547772926 1.620000e-49 207.0
56 TraesCS2A01G463800 chr4B 86.170 188 24 2 1999 2186 47595860 47596045 7.550000e-48 202.0
57 TraesCS2A01G463800 chr4B 86.170 188 24 2 1999 2186 246522492 246522677 7.550000e-48 202.0
58 TraesCS2A01G463800 chr6D 88.108 185 20 2 1999 2183 393990610 393990428 7.500000e-53 219.0
59 TraesCS2A01G463800 chr6D 86.559 186 24 1 1998 2182 128260628 128260813 2.100000e-48 204.0
60 TraesCS2A01G463800 chr6D 84.946 186 19 5 1999 2183 11692714 11692537 3.540000e-41 180.0
61 TraesCS2A01G463800 chr6D 82.530 166 26 3 2001 2165 464733821 464733658 4.640000e-30 143.0
62 TraesCS2A01G463800 chr6D 81.421 183 25 3 1998 2180 65601219 65601046 1.670000e-29 141.0
63 TraesCS2A01G463800 chr5B 87.766 188 22 1 1999 2186 303721298 303721112 7.500000e-53 219.0
64 TraesCS2A01G463800 chr6B 87.634 186 21 2 1999 2183 570215927 570215743 9.700000e-52 215.0
65 TraesCS2A01G463800 chr4D 86.957 184 22 2 1999 2182 371840616 371840797 5.840000e-49 206.0
66 TraesCS2A01G463800 chr4D 85.638 188 26 1 1999 2186 330136441 330136255 3.510000e-46 196.0
67 TraesCS2A01G463800 chr4D 85.484 186 25 2 1999 2183 13093406 13093590 4.550000e-45 193.0
68 TraesCS2A01G463800 chr5D 83.511 188 27 4 1998 2183 514151692 514151507 5.920000e-39 172.0
69 TraesCS2A01G463800 chr5D 82.090 201 34 2 2002 2202 359047167 359047365 2.130000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G463800 chr2A 709695333 709699785 4452 False 3995.000 4534 100.0000 1 4453 2 chr2A.!!$F1 4452
1 TraesCS2A01G463800 chr2A 709416962 709420857 3895 True 592.075 1127 85.6255 965 4453 4 chr2A.!!$R2 3488
2 TraesCS2A01G463800 chrUn 300835803 300837674 1871 True 3328.000 3328 98.7710 2583 4453 1 chrUn.!!$R2 1870
3 TraesCS2A01G463800 chr7A 632666350 632667204 854 False 1327.000 1327 94.7370 1 851 1 chr7A.!!$F1 850
4 TraesCS2A01G463800 chr7A 636903889 636904742 853 False 1327.000 1327 94.7370 1 852 1 chr7A.!!$F2 851
5 TraesCS2A01G463800 chr7A 528301445 528302307 862 True 1312.000 1312 94.3220 1 851 1 chr7A.!!$R3 850
6 TraesCS2A01G463800 chr7A 59014559 59015405 846 True 1295.000 1295 94.2290 1 849 1 chr7A.!!$R1 848
7 TraesCS2A01G463800 chr5A 622759653 622760508 855 True 1308.000 1308 94.2890 1 854 1 chr5A.!!$R3 853
8 TraesCS2A01G463800 chr5A 651535853 651536701 848 True 1297.000 1297 94.2420 1 849 1 chr5A.!!$R4 848
9 TraesCS2A01G463800 chr5A 570490762 570491608 846 True 1284.000 1284 94.0000 1 849 1 chr5A.!!$R2 848
10 TraesCS2A01G463800 chr6A 21113150 21113991 841 False 1280.000 1280 94.0970 6 849 1 chr6A.!!$F1 843
11 TraesCS2A01G463800 chr4A 532358392 532359237 845 False 1271.000 1271 93.7650 1 849 1 chr4A.!!$F1 848
12 TraesCS2A01G463800 chr2B 682801109 682801988 879 False 870.000 870 84.5800 2614 3491 1 chr2B.!!$F2 877
13 TraesCS2A01G463800 chr2B 682792688 682793252 564 False 431.000 431 80.6510 960 1539 1 chr2B.!!$F1 579
14 TraesCS2A01G463800 chr7D 72386327 72387970 1643 False 560.000 599 80.3100 1057 3278 2 chr7D.!!$F3 2221
15 TraesCS2A01G463800 chr1B 11937190 11937775 585 False 470.000 470 81.1540 2699 3287 1 chr1B.!!$F1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 897 0.103208 GAGATCTTGGCGTCGGTGAT 59.897 55.0 0.0 0.0 0.00 3.06 F
1303 1330 0.034896 TCCTCAAGTTCGGCAAGGTC 59.965 55.0 0.0 0.0 0.00 3.85 F
1694 1724 0.320683 CACCTTGCTCGGTCATGTGA 60.321 55.0 0.0 0.0 34.29 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1839 0.373716 GCGTTCCAGGAACAATAGCG 59.626 55.000 28.47 16.32 42.05 4.26 R
2407 2440 2.369860 TCAGATGCCACAAAGTGAGTCT 59.630 45.455 0.00 0.00 35.23 3.24 R
3669 4263 1.102154 CATTGTGTGTGGTGGTGTGT 58.898 50.000 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 182 3.691342 CTCCGTCCCGTCAAGCCA 61.691 66.667 0.00 0.00 0.00 4.75
352 353 2.805546 GTGCGCGAGGAGATGGTA 59.194 61.111 12.10 0.00 0.00 3.25
357 358 2.331805 CGAGGAGATGGTACGGCG 59.668 66.667 4.80 4.80 0.00 6.46
562 572 1.133790 GGTGACTACACGCGGTTCTAT 59.866 52.381 12.47 0.00 46.77 1.98
854 876 1.423161 GGCTGGAGATGCCCTAAGATT 59.577 52.381 0.00 0.00 44.32 2.40
855 877 2.639839 GGCTGGAGATGCCCTAAGATTA 59.360 50.000 0.00 0.00 44.32 1.75
856 878 3.307339 GGCTGGAGATGCCCTAAGATTAG 60.307 52.174 0.00 0.00 44.32 1.73
857 879 3.580458 GCTGGAGATGCCCTAAGATTAGA 59.420 47.826 1.08 0.00 34.97 2.10
858 880 4.322650 GCTGGAGATGCCCTAAGATTAGAG 60.323 50.000 1.08 0.00 34.97 2.43
859 881 5.079998 TGGAGATGCCCTAAGATTAGAGA 57.920 43.478 1.08 0.00 34.97 3.10
860 882 5.659503 TGGAGATGCCCTAAGATTAGAGAT 58.340 41.667 1.08 0.00 34.97 2.75
861 883 5.719085 TGGAGATGCCCTAAGATTAGAGATC 59.281 44.000 1.08 0.00 34.97 2.75
862 884 5.957774 GGAGATGCCCTAAGATTAGAGATCT 59.042 44.000 0.00 0.00 32.47 2.75
863 885 6.440328 GGAGATGCCCTAAGATTAGAGATCTT 59.560 42.308 0.00 6.52 40.95 2.40
864 886 7.243604 AGATGCCCTAAGATTAGAGATCTTG 57.756 40.000 10.64 2.76 38.66 3.02
865 887 5.815233 TGCCCTAAGATTAGAGATCTTGG 57.185 43.478 10.64 8.00 38.66 3.61
866 888 4.040952 TGCCCTAAGATTAGAGATCTTGGC 59.959 45.833 16.90 16.90 42.67 4.52
867 889 4.815269 CCCTAAGATTAGAGATCTTGGCG 58.185 47.826 10.64 0.00 38.66 5.69
868 890 4.282195 CCCTAAGATTAGAGATCTTGGCGT 59.718 45.833 10.64 0.00 38.66 5.68
869 891 5.465935 CCTAAGATTAGAGATCTTGGCGTC 58.534 45.833 10.64 0.00 38.66 5.19
870 892 3.634568 AGATTAGAGATCTTGGCGTCG 57.365 47.619 0.00 0.00 0.00 5.12
871 893 2.294791 AGATTAGAGATCTTGGCGTCGG 59.705 50.000 0.00 0.00 0.00 4.79
872 894 1.471119 TTAGAGATCTTGGCGTCGGT 58.529 50.000 0.00 0.00 0.00 4.69
873 895 0.738975 TAGAGATCTTGGCGTCGGTG 59.261 55.000 0.00 0.00 0.00 4.94
874 896 0.965866 AGAGATCTTGGCGTCGGTGA 60.966 55.000 0.00 0.00 0.00 4.02
875 897 0.103208 GAGATCTTGGCGTCGGTGAT 59.897 55.000 0.00 0.00 0.00 3.06
876 898 0.179100 AGATCTTGGCGTCGGTGATG 60.179 55.000 0.00 0.00 0.00 3.07
877 899 1.153369 ATCTTGGCGTCGGTGATGG 60.153 57.895 0.00 0.00 0.00 3.51
878 900 3.499737 CTTGGCGTCGGTGATGGC 61.500 66.667 5.70 5.70 43.18 4.40
881 903 4.778143 GGCGTCGGTGATGGCCTT 62.778 66.667 3.32 0.00 42.29 4.35
882 904 3.499737 GCGTCGGTGATGGCCTTG 61.500 66.667 3.32 0.00 0.00 3.61
883 905 2.819595 CGTCGGTGATGGCCTTGG 60.820 66.667 3.32 0.00 0.00 3.61
884 906 2.351276 GTCGGTGATGGCCTTGGT 59.649 61.111 3.32 0.00 0.00 3.67
885 907 1.303317 GTCGGTGATGGCCTTGGTT 60.303 57.895 3.32 0.00 0.00 3.67
886 908 0.893727 GTCGGTGATGGCCTTGGTTT 60.894 55.000 3.32 0.00 0.00 3.27
887 909 0.893270 TCGGTGATGGCCTTGGTTTG 60.893 55.000 3.32 0.00 0.00 2.93
888 910 1.876497 CGGTGATGGCCTTGGTTTGG 61.876 60.000 3.32 0.00 0.00 3.28
894 916 4.056125 GCCTTGGTTTGGCCGCTC 62.056 66.667 0.00 0.00 44.32 5.03
895 917 3.373565 CCTTGGTTTGGCCGCTCC 61.374 66.667 0.00 0.00 41.21 4.70
896 918 3.737172 CTTGGTTTGGCCGCTCCG 61.737 66.667 0.00 0.00 41.21 4.63
947 969 8.641499 TGGTTTTTAACAAAAGTAGCATCAAG 57.359 30.769 0.00 0.00 32.32 3.02
948 970 7.223777 TGGTTTTTAACAAAAGTAGCATCAAGC 59.776 33.333 0.00 0.00 36.61 4.01
949 971 7.223777 GGTTTTTAACAAAAGTAGCATCAAGCA 59.776 33.333 0.00 0.00 37.93 3.91
950 972 8.599774 GTTTTTAACAAAAGTAGCATCAAGCAA 58.400 29.630 0.00 0.00 37.93 3.91
957 979 4.972591 GCATCAAGCAACCACCAC 57.027 55.556 0.00 0.00 44.79 4.16
958 980 2.040330 GCATCAAGCAACCACCACA 58.960 52.632 0.00 0.00 44.79 4.17
961 983 2.472816 CATCAAGCAACCACCACAAAC 58.527 47.619 0.00 0.00 0.00 2.93
989 1013 8.777865 TGCCTATATAATGTGATTACTTGAGC 57.222 34.615 0.00 0.00 0.00 4.26
1008 1032 1.004745 GCTCTCCATCCAGAAACCCAA 59.995 52.381 0.00 0.00 0.00 4.12
1011 1035 3.192944 TCTCCATCCAGAAACCCAATCT 58.807 45.455 0.00 0.00 0.00 2.40
1013 1037 3.698040 CTCCATCCAGAAACCCAATCTTG 59.302 47.826 0.00 0.00 0.00 3.02
1015 1039 4.290985 TCCATCCAGAAACCCAATCTTGTA 59.709 41.667 0.00 0.00 0.00 2.41
1017 1041 4.715534 TCCAGAAACCCAATCTTGTACA 57.284 40.909 0.00 0.00 0.00 2.90
1018 1042 5.055265 TCCAGAAACCCAATCTTGTACAA 57.945 39.130 8.28 8.28 0.00 2.41
1019 1043 5.640147 TCCAGAAACCCAATCTTGTACAAT 58.360 37.500 9.13 0.00 0.00 2.71
1020 1044 6.074648 TCCAGAAACCCAATCTTGTACAATT 58.925 36.000 9.13 0.00 0.00 2.32
1022 1046 6.086222 CAGAAACCCAATCTTGTACAATTCG 58.914 40.000 9.13 0.00 0.00 3.34
1024 1048 2.752903 ACCCAATCTTGTACAATTCGGC 59.247 45.455 9.13 0.00 0.00 5.54
1033 1057 4.880886 TGTACAATTCGGCATTGATCAG 57.119 40.909 7.36 0.00 44.78 2.90
1035 1059 4.332543 TGTACAATTCGGCATTGATCAGAC 59.667 41.667 7.36 0.00 44.78 3.51
1039 1063 1.856802 TCGGCATTGATCAGACATCG 58.143 50.000 0.00 0.00 0.00 3.84
1040 1064 1.136891 TCGGCATTGATCAGACATCGT 59.863 47.619 0.00 0.00 0.00 3.73
1048 1072 3.352648 TGATCAGACATCGTCCACACTA 58.647 45.455 0.00 0.00 32.18 2.74
1050 1074 2.791655 TCAGACATCGTCCACACTAGT 58.208 47.619 0.00 0.00 32.18 2.57
1052 1076 3.057526 TCAGACATCGTCCACACTAGTTG 60.058 47.826 0.00 0.00 32.18 3.16
1054 1078 3.057456 AGACATCGTCCACACTAGTTGTC 60.057 47.826 10.67 10.67 35.67 3.18
1083 1107 0.659427 GTCATGGACGGTGATGCATG 59.341 55.000 2.46 1.24 46.59 4.06
1093 1117 3.249091 CGGTGATGCATGCTACTATCTC 58.751 50.000 20.33 13.23 0.00 2.75
1119 1146 3.495001 GCTCTTCTTCCACTTGTGTACAC 59.505 47.826 19.36 19.36 0.00 2.90
1123 1150 4.002906 TCTTCCACTTGTGTACACCATC 57.997 45.455 22.91 0.00 0.00 3.51
1131 1158 3.052455 TGTGTACACCATCATTCGCTT 57.948 42.857 22.91 0.00 0.00 4.68
1134 1161 3.307242 GTGTACACCATCATTCGCTTCTC 59.693 47.826 15.42 0.00 0.00 2.87
1135 1162 2.029838 ACACCATCATTCGCTTCTCC 57.970 50.000 0.00 0.00 0.00 3.71
1148 1175 1.462670 GCTTCTCCAGAGCGTTCTTTG 59.537 52.381 0.00 0.00 0.00 2.77
1219 1246 4.101448 ATCGGCAGCCTCCACCAC 62.101 66.667 10.54 0.00 0.00 4.16
1225 1252 1.527433 GCAGCCTCCACCACCTTTTC 61.527 60.000 0.00 0.00 0.00 2.29
1261 1288 1.684734 TGCCTTACGGGACCTCTCC 60.685 63.158 0.00 0.00 37.23 3.71
1303 1330 0.034896 TCCTCAAGTTCGGCAAGGTC 59.965 55.000 0.00 0.00 0.00 3.85
1313 1340 1.685224 GGCAAGGTCCCAGTGATCA 59.315 57.895 0.00 0.00 0.00 2.92
1364 1391 1.733041 ATGAAGACGCACGACCACG 60.733 57.895 0.00 0.00 45.75 4.94
1375 1402 2.022129 CGACCACGTCTTCTGCACC 61.022 63.158 0.00 0.00 34.56 5.01
1418 1445 1.210155 GTGTTGAACGAGCATGGCC 59.790 57.895 0.00 0.00 0.00 5.36
1420 1447 2.361104 TTGAACGAGCATGGCCCC 60.361 61.111 0.00 0.00 0.00 5.80
1429 1456 3.958860 CATGGCCCCGGGATCTCC 61.959 72.222 26.32 17.59 0.00 3.71
1432 1459 3.097162 GGCCCCGGGATCTCCTTT 61.097 66.667 26.32 0.00 35.95 3.11
1452 1479 4.430765 CCCGTACGGCGAGCACTT 62.431 66.667 29.15 0.00 44.77 3.16
1516 1543 0.320771 AGCGCATCAACTCTTTCCGT 60.321 50.000 11.47 0.00 0.00 4.69
1539 1566 2.575993 CCGTGAGCAGGAGGTGAG 59.424 66.667 0.00 0.00 0.00 3.51
1541 1568 2.125753 GTGAGCAGGAGGTGAGCG 60.126 66.667 0.00 0.00 0.00 5.03
1542 1569 2.601666 TGAGCAGGAGGTGAGCGT 60.602 61.111 0.00 0.00 0.00 5.07
1571 1598 1.541889 GCTCCATCTCATCCGCATCAA 60.542 52.381 0.00 0.00 0.00 2.57
1574 1601 2.171237 TCCATCTCATCCGCATCAAAGT 59.829 45.455 0.00 0.00 0.00 2.66
1577 1604 0.933097 CTCATCCGCATCAAAGTCGG 59.067 55.000 0.00 0.00 44.16 4.79
1583 1610 1.796796 GCATCAAAGTCGGAGCCAC 59.203 57.895 0.00 0.00 0.00 5.01
1584 1611 0.674895 GCATCAAAGTCGGAGCCACT 60.675 55.000 0.00 0.00 0.00 4.00
1649 1679 1.406751 CGGTGCACTCAATCATGGGTA 60.407 52.381 17.98 0.00 38.55 3.69
1650 1680 2.017049 GGTGCACTCAATCATGGGTAC 58.983 52.381 17.98 0.00 38.55 3.34
1664 1694 2.060370 GGTACCCGGTTCAAGGACA 58.940 57.895 0.00 0.00 0.00 4.02
1670 1700 2.372690 CGGTTCAAGGACAGCGACG 61.373 63.158 0.00 0.00 35.95 5.12
1671 1701 1.300697 GGTTCAAGGACAGCGACGT 60.301 57.895 0.00 0.00 0.00 4.34
1674 1704 0.878523 TTCAAGGACAGCGACGTTGG 60.879 55.000 16.27 0.00 35.01 3.77
1686 1716 3.726517 CGTTGGCACCTTGCTCGG 61.727 66.667 0.00 0.00 44.28 4.63
1688 1718 2.281484 TTGGCACCTTGCTCGGTC 60.281 61.111 0.00 0.00 44.28 4.79
1693 1723 1.915614 GCACCTTGCTCGGTCATGTG 61.916 60.000 0.00 0.00 40.96 3.21
1694 1724 0.320683 CACCTTGCTCGGTCATGTGA 60.321 55.000 0.00 0.00 34.29 3.58
1696 1726 1.202758 ACCTTGCTCGGTCATGTGAAA 60.203 47.619 0.00 0.00 29.14 2.69
1718 1748 3.125607 CGGTGCGGCTGATAGGTA 58.874 61.111 0.00 0.00 0.00 3.08
1727 1757 1.414158 GCTGATAGGTAGCCTCACCA 58.586 55.000 2.88 0.00 41.40 4.17
1751 1781 1.008079 GACTTGTTCCCGTCGTCGT 60.008 57.895 0.71 0.00 35.01 4.34
1759 1789 4.111016 CCGTCGTCGTGGCTAGCA 62.111 66.667 18.24 0.00 35.01 3.49
1809 1839 4.131088 GGTCTGCCGGGACTCGTC 62.131 72.222 2.18 0.00 36.55 4.20
1815 1845 3.117372 CCGGGACTCGTCGCTATT 58.883 61.111 11.54 0.00 39.99 1.73
1835 1865 0.389948 GTTCCTGGAACGCGTCATCT 60.390 55.000 22.67 0.00 32.81 2.90
1836 1866 0.389817 TTCCTGGAACGCGTCATCTG 60.390 55.000 14.44 9.12 0.00 2.90
1846 1876 1.649664 GCGTCATCTGTGAGCATCTT 58.350 50.000 0.00 0.00 34.36 2.40
1852 1882 4.021916 TCATCTGTGAGCATCTTGAGAGA 58.978 43.478 0.00 0.00 34.92 3.10
1855 1885 3.195182 TCTGTGAGCATCTTGAGAGAAGG 59.805 47.826 0.00 0.00 35.07 3.46
1863 1893 3.481559 TCTTGAGAGAAGGTCCTCCAT 57.518 47.619 0.00 0.00 35.89 3.41
1867 1897 8.823853 ATCTTGAGAGAAGGTCCTCCATGGAT 62.824 46.154 16.63 0.00 40.40 3.41
1880 1913 1.548081 CATGGATGTGCACCAGGAAA 58.452 50.000 15.69 0.00 40.97 3.13
1881 1914 2.104967 CATGGATGTGCACCAGGAAAT 58.895 47.619 15.69 0.00 40.97 2.17
1980 2013 8.349983 AGCAGTGATTTTCGTAAGTTATTTTGT 58.650 29.630 0.00 0.00 39.48 2.83
1989 2022 9.709495 TTTCGTAAGTTATTTTGTTCCTAGCTA 57.291 29.630 0.00 0.00 39.48 3.32
1991 2024 8.526147 TCGTAAGTTATTTTGTTCCTAGCTACT 58.474 33.333 0.00 0.00 39.48 2.57
1992 2025 9.793252 CGTAAGTTATTTTGTTCCTAGCTACTA 57.207 33.333 0.00 0.00 0.00 1.82
2033 2066 8.915871 ACTAACAAAATATTCATGCATGTCAC 57.084 30.769 25.43 0.00 0.00 3.67
2034 2067 7.975616 ACTAACAAAATATTCATGCATGTCACC 59.024 33.333 25.43 0.00 0.00 4.02
2035 2068 6.283544 ACAAAATATTCATGCATGTCACCA 57.716 33.333 25.43 3.60 0.00 4.17
2036 2069 6.699366 ACAAAATATTCATGCATGTCACCAA 58.301 32.000 25.43 12.91 0.00 3.67
2037 2070 7.160049 ACAAAATATTCATGCATGTCACCAAA 58.840 30.769 25.43 12.19 0.00 3.28
2038 2071 7.660617 ACAAAATATTCATGCATGTCACCAAAA 59.339 29.630 25.43 11.48 0.00 2.44
2039 2072 8.504815 CAAAATATTCATGCATGTCACCAAAAA 58.495 29.630 25.43 10.76 0.00 1.94
2040 2073 8.795842 AAATATTCATGCATGTCACCAAAAAT 57.204 26.923 25.43 16.62 0.00 1.82
2041 2074 9.887629 AAATATTCATGCATGTCACCAAAAATA 57.112 25.926 25.43 18.05 0.00 1.40
2042 2075 9.887629 AATATTCATGCATGTCACCAAAAATAA 57.112 25.926 25.43 8.83 0.00 1.40
2046 2079 9.531942 TTCATGCATGTCACCAAAAATAATATC 57.468 29.630 25.43 0.00 0.00 1.63
2047 2080 8.693625 TCATGCATGTCACCAAAAATAATATCA 58.306 29.630 25.43 0.00 0.00 2.15
2048 2081 9.483916 CATGCATGTCACCAAAAATAATATCAT 57.516 29.630 18.91 0.00 0.00 2.45
2115 2148 9.838975 TTATAACATGCACTAACATTTTGTGAG 57.161 29.630 4.92 0.00 34.91 3.51
2116 2149 5.772825 ACATGCACTAACATTTTGTGAGT 57.227 34.783 4.92 0.00 42.74 3.41
2117 2150 6.147864 ACATGCACTAACATTTTGTGAGTT 57.852 33.333 4.92 0.00 38.96 3.01
2118 2151 5.978919 ACATGCACTAACATTTTGTGAGTTG 59.021 36.000 4.92 0.00 38.96 3.16
2119 2152 5.826601 TGCACTAACATTTTGTGAGTTGA 57.173 34.783 4.92 0.00 38.96 3.18
2120 2153 6.201226 TGCACTAACATTTTGTGAGTTGAA 57.799 33.333 4.92 0.00 38.96 2.69
2121 2154 6.804677 TGCACTAACATTTTGTGAGTTGAAT 58.195 32.000 4.92 0.00 38.96 2.57
2122 2155 6.917477 TGCACTAACATTTTGTGAGTTGAATC 59.083 34.615 4.92 0.00 38.96 2.52
2123 2156 7.141363 GCACTAACATTTTGTGAGTTGAATCT 58.859 34.615 4.92 0.00 38.96 2.40
2124 2157 7.649306 GCACTAACATTTTGTGAGTTGAATCTT 59.351 33.333 4.92 0.00 38.96 2.40
2125 2158 9.520204 CACTAACATTTTGTGAGTTGAATCTTT 57.480 29.630 0.00 0.00 38.96 2.52
2126 2159 9.520204 ACTAACATTTTGTGAGTTGAATCTTTG 57.480 29.630 0.00 0.00 38.96 2.77
2127 2160 7.775397 AACATTTTGTGAGTTGAATCTTTGG 57.225 32.000 0.00 0.00 0.00 3.28
2128 2161 6.877236 ACATTTTGTGAGTTGAATCTTTGGT 58.123 32.000 0.00 0.00 0.00 3.67
2129 2162 6.980397 ACATTTTGTGAGTTGAATCTTTGGTC 59.020 34.615 0.00 0.00 0.00 4.02
2130 2163 6.522625 TTTTGTGAGTTGAATCTTTGGTCA 57.477 33.333 0.00 0.00 0.00 4.02
2131 2164 6.522625 TTTGTGAGTTGAATCTTTGGTCAA 57.477 33.333 0.00 0.00 0.00 3.18
2132 2165 6.522625 TTGTGAGTTGAATCTTTGGTCAAA 57.477 33.333 0.00 0.00 35.60 2.69
2133 2166 6.522625 TGTGAGTTGAATCTTTGGTCAAAA 57.477 33.333 0.00 0.00 35.60 2.44
2134 2167 7.111247 TGTGAGTTGAATCTTTGGTCAAAAT 57.889 32.000 0.00 0.00 35.60 1.82
2135 2168 7.555087 TGTGAGTTGAATCTTTGGTCAAAATT 58.445 30.769 0.00 1.95 35.60 1.82
2136 2169 7.492020 TGTGAGTTGAATCTTTGGTCAAAATTG 59.508 33.333 0.00 0.00 35.60 2.32
2137 2170 7.706179 GTGAGTTGAATCTTTGGTCAAAATTGA 59.294 33.333 0.00 0.00 35.60 2.57
2138 2171 7.922278 TGAGTTGAATCTTTGGTCAAAATTGAG 59.078 33.333 0.00 0.00 37.98 3.02
2154 2187 9.434420 TCAAAATTGAGCACAAATTATAAAGGG 57.566 29.630 0.00 0.00 39.54 3.95
2155 2188 8.667463 CAAAATTGAGCACAAATTATAAAGGGG 58.333 33.333 0.00 0.00 39.54 4.79
2156 2189 7.732222 AATTGAGCACAAATTATAAAGGGGA 57.268 32.000 0.00 0.00 39.54 4.81
2157 2190 6.524101 TTGAGCACAAATTATAAAGGGGAC 57.476 37.500 0.00 0.00 32.73 4.46
2158 2191 6.252995 TTGAGCACAAATTATAAAGGGGACT 58.747 36.000 0.00 0.00 35.93 3.85
2159 2192 6.964464 TGAGCACAAATTATAAAGGGGACTA 58.036 36.000 0.00 0.00 42.68 2.59
2160 2193 7.406916 TGAGCACAAATTATAAAGGGGACTAA 58.593 34.615 0.00 0.00 42.68 2.24
2161 2194 8.058847 TGAGCACAAATTATAAAGGGGACTAAT 58.941 33.333 0.00 0.00 42.68 1.73
2162 2195 9.569122 GAGCACAAATTATAAAGGGGACTAATA 57.431 33.333 0.00 0.00 42.68 0.98
2163 2196 9.930158 AGCACAAATTATAAAGGGGACTAATAA 57.070 29.630 0.00 0.00 42.68 1.40
2171 2204 9.910267 TTATAAAGGGGACTAATAAAACAGGAC 57.090 33.333 0.00 0.00 42.68 3.85
2172 2205 4.482952 AGGGGACTAATAAAACAGGACG 57.517 45.455 0.00 0.00 40.61 4.79
2173 2206 3.199289 AGGGGACTAATAAAACAGGACGG 59.801 47.826 0.00 0.00 40.61 4.79
2174 2207 3.198417 GGGGACTAATAAAACAGGACGGA 59.802 47.826 0.00 0.00 0.00 4.69
2175 2208 4.141551 GGGGACTAATAAAACAGGACGGAT 60.142 45.833 0.00 0.00 0.00 4.18
2176 2209 4.814771 GGGACTAATAAAACAGGACGGATG 59.185 45.833 0.00 0.00 0.00 3.51
2177 2210 5.425630 GGACTAATAAAACAGGACGGATGT 58.574 41.667 0.00 0.00 0.00 3.06
2178 2211 6.407299 GGGACTAATAAAACAGGACGGATGTA 60.407 42.308 0.00 0.00 0.00 2.29
2179 2212 6.700520 GGACTAATAAAACAGGACGGATGTAG 59.299 42.308 0.00 0.00 0.00 2.74
2180 2213 7.179076 ACTAATAAAACAGGACGGATGTAGT 57.821 36.000 0.00 0.00 0.00 2.73
2183 2216 7.414222 AATAAAACAGGACGGATGTAGTAGA 57.586 36.000 0.00 0.00 0.00 2.59
2215 2248 7.804843 ATATATACTCTCACGCTATACCACC 57.195 40.000 0.00 0.00 0.00 4.61
2216 2249 2.438800 ACTCTCACGCTATACCACCT 57.561 50.000 0.00 0.00 0.00 4.00
2217 2250 3.572632 ACTCTCACGCTATACCACCTA 57.427 47.619 0.00 0.00 0.00 3.08
2218 2251 3.894759 ACTCTCACGCTATACCACCTAA 58.105 45.455 0.00 0.00 0.00 2.69
2219 2252 4.275810 ACTCTCACGCTATACCACCTAAA 58.724 43.478 0.00 0.00 0.00 1.85
2220 2253 4.097589 ACTCTCACGCTATACCACCTAAAC 59.902 45.833 0.00 0.00 0.00 2.01
2221 2254 4.018490 TCTCACGCTATACCACCTAAACA 58.982 43.478 0.00 0.00 0.00 2.83
2222 2255 4.463539 TCTCACGCTATACCACCTAAACAA 59.536 41.667 0.00 0.00 0.00 2.83
2223 2256 5.047164 TCTCACGCTATACCACCTAAACAAA 60.047 40.000 0.00 0.00 0.00 2.83
2224 2257 4.931002 TCACGCTATACCACCTAAACAAAC 59.069 41.667 0.00 0.00 0.00 2.93
2225 2258 4.933400 CACGCTATACCACCTAAACAAACT 59.067 41.667 0.00 0.00 0.00 2.66
2226 2259 5.410439 CACGCTATACCACCTAAACAAACTT 59.590 40.000 0.00 0.00 0.00 2.66
2227 2260 6.591062 CACGCTATACCACCTAAACAAACTTA 59.409 38.462 0.00 0.00 0.00 2.24
2228 2261 7.279313 CACGCTATACCACCTAAACAAACTTAT 59.721 37.037 0.00 0.00 0.00 1.73
2229 2262 7.825761 ACGCTATACCACCTAAACAAACTTATT 59.174 33.333 0.00 0.00 0.00 1.40
2230 2263 9.316730 CGCTATACCACCTAAACAAACTTATTA 57.683 33.333 0.00 0.00 0.00 0.98
2328 2361 9.778741 ATATCATCGAAGCCTTTACTTTATTCA 57.221 29.630 0.00 0.00 0.00 2.57
2329 2362 7.303634 TCATCGAAGCCTTTACTTTATTCAC 57.696 36.000 0.00 0.00 0.00 3.18
2330 2363 7.103641 TCATCGAAGCCTTTACTTTATTCACT 58.896 34.615 0.00 0.00 0.00 3.41
2331 2364 6.721571 TCGAAGCCTTTACTTTATTCACTG 57.278 37.500 0.00 0.00 0.00 3.66
2332 2365 6.228258 TCGAAGCCTTTACTTTATTCACTGT 58.772 36.000 0.00 0.00 0.00 3.55
2333 2366 6.147164 TCGAAGCCTTTACTTTATTCACTGTG 59.853 38.462 0.17 0.17 0.00 3.66
2334 2367 5.629079 AGCCTTTACTTTATTCACTGTGC 57.371 39.130 2.12 0.00 0.00 4.57
2335 2368 4.459337 AGCCTTTACTTTATTCACTGTGCC 59.541 41.667 2.12 0.00 0.00 5.01
2336 2369 4.217550 GCCTTTACTTTATTCACTGTGCCA 59.782 41.667 2.12 0.00 0.00 4.92
2337 2370 5.105756 GCCTTTACTTTATTCACTGTGCCAT 60.106 40.000 2.12 0.37 0.00 4.40
2338 2371 6.572314 GCCTTTACTTTATTCACTGTGCCATT 60.572 38.462 2.12 0.00 0.00 3.16
2339 2372 7.378181 CCTTTACTTTATTCACTGTGCCATTT 58.622 34.615 2.12 0.00 0.00 2.32
2340 2373 7.872483 CCTTTACTTTATTCACTGTGCCATTTT 59.128 33.333 2.12 0.00 0.00 1.82
2341 2374 9.260002 CTTTACTTTATTCACTGTGCCATTTTT 57.740 29.630 2.12 0.00 0.00 1.94
2343 2376 9.685828 TTACTTTATTCACTGTGCCATTTTTAC 57.314 29.630 2.12 0.00 0.00 2.01
2344 2377 7.721402 ACTTTATTCACTGTGCCATTTTTACA 58.279 30.769 2.12 0.00 0.00 2.41
2345 2378 8.367156 ACTTTATTCACTGTGCCATTTTTACAT 58.633 29.630 2.12 0.00 0.00 2.29
2346 2379 9.853555 CTTTATTCACTGTGCCATTTTTACATA 57.146 29.630 2.12 0.00 0.00 2.29
2347 2380 9.853555 TTTATTCACTGTGCCATTTTTACATAG 57.146 29.630 2.12 0.00 0.00 2.23
2348 2381 7.701539 ATTCACTGTGCCATTTTTACATAGA 57.298 32.000 2.12 0.00 0.00 1.98
2349 2382 7.517614 TTCACTGTGCCATTTTTACATAGAA 57.482 32.000 2.12 0.00 0.00 2.10
2350 2383 7.517614 TCACTGTGCCATTTTTACATAGAAA 57.482 32.000 2.12 0.00 0.00 2.52
2351 2384 7.946207 TCACTGTGCCATTTTTACATAGAAAA 58.054 30.769 2.12 0.00 0.00 2.29
2352 2385 8.417106 TCACTGTGCCATTTTTACATAGAAAAA 58.583 29.630 2.12 0.00 41.28 1.94
2353 2386 9.206870 CACTGTGCCATTTTTACATAGAAAAAT 57.793 29.630 0.00 1.90 45.50 1.82
2409 2442 8.777865 ATCTCAAACTGATTCGTTTCATTAGA 57.222 30.769 4.41 0.00 35.06 2.10
2410 2443 8.018677 TCTCAAACTGATTCGTTTCATTAGAC 57.981 34.615 4.41 0.00 35.06 2.59
2411 2444 7.872993 TCTCAAACTGATTCGTTTCATTAGACT 59.127 33.333 4.41 0.00 35.06 3.24
2412 2445 8.018677 TCAAACTGATTCGTTTCATTAGACTC 57.981 34.615 4.41 0.00 35.06 3.36
2413 2446 7.655732 TCAAACTGATTCGTTTCATTAGACTCA 59.344 33.333 4.41 0.00 35.06 3.41
2414 2447 6.952935 ACTGATTCGTTTCATTAGACTCAC 57.047 37.500 0.00 0.00 0.00 3.51
2415 2448 6.692486 ACTGATTCGTTTCATTAGACTCACT 58.308 36.000 0.00 0.00 0.00 3.41
2416 2449 7.155328 ACTGATTCGTTTCATTAGACTCACTT 58.845 34.615 0.00 0.00 0.00 3.16
2417 2450 7.657761 ACTGATTCGTTTCATTAGACTCACTTT 59.342 33.333 0.00 0.00 0.00 2.66
2418 2451 7.796838 TGATTCGTTTCATTAGACTCACTTTG 58.203 34.615 0.00 0.00 0.00 2.77
2419 2452 7.441157 TGATTCGTTTCATTAGACTCACTTTGT 59.559 33.333 0.00 0.00 0.00 2.83
2420 2453 6.525121 TCGTTTCATTAGACTCACTTTGTG 57.475 37.500 0.00 0.00 34.45 3.33
2421 2454 5.465390 TCGTTTCATTAGACTCACTTTGTGG 59.535 40.000 0.00 0.00 33.87 4.17
2422 2455 5.452777 GTTTCATTAGACTCACTTTGTGGC 58.547 41.667 0.00 0.00 33.87 5.01
2423 2456 4.350368 TCATTAGACTCACTTTGTGGCA 57.650 40.909 0.00 0.00 33.87 4.92
2424 2457 4.910195 TCATTAGACTCACTTTGTGGCAT 58.090 39.130 0.00 0.00 33.87 4.40
2425 2458 4.937620 TCATTAGACTCACTTTGTGGCATC 59.062 41.667 0.00 0.00 33.87 3.91
2426 2459 4.623932 TTAGACTCACTTTGTGGCATCT 57.376 40.909 0.00 0.00 33.87 2.90
2427 2460 2.775890 AGACTCACTTTGTGGCATCTG 58.224 47.619 0.00 0.00 33.87 2.90
2428 2461 2.369860 AGACTCACTTTGTGGCATCTGA 59.630 45.455 0.00 0.00 33.87 3.27
2429 2462 3.141398 GACTCACTTTGTGGCATCTGAA 58.859 45.455 0.00 0.00 33.87 3.02
2430 2463 3.144506 ACTCACTTTGTGGCATCTGAAG 58.855 45.455 0.00 0.00 33.87 3.02
2431 2464 3.144506 CTCACTTTGTGGCATCTGAAGT 58.855 45.455 0.00 0.00 33.87 3.01
2432 2465 4.202357 ACTCACTTTGTGGCATCTGAAGTA 60.202 41.667 0.00 0.00 33.87 2.24
2433 2466 4.910195 TCACTTTGTGGCATCTGAAGTAT 58.090 39.130 0.00 0.00 33.87 2.12
2434 2467 6.048732 TCACTTTGTGGCATCTGAAGTATA 57.951 37.500 0.00 0.00 33.87 1.47
2435 2468 6.653020 TCACTTTGTGGCATCTGAAGTATAT 58.347 36.000 0.00 0.00 33.87 0.86
2436 2469 7.112122 TCACTTTGTGGCATCTGAAGTATATT 58.888 34.615 0.00 0.00 33.87 1.28
2437 2470 8.264347 TCACTTTGTGGCATCTGAAGTATATTA 58.736 33.333 0.00 0.00 33.87 0.98
2438 2471 8.892723 CACTTTGTGGCATCTGAAGTATATTAA 58.107 33.333 0.00 0.00 0.00 1.40
2439 2472 9.461312 ACTTTGTGGCATCTGAAGTATATTAAA 57.539 29.630 0.00 0.00 0.00 1.52
3576 3615 6.337356 TCTTTTGTGGTTGGATCTTTTTGAC 58.663 36.000 0.00 0.00 0.00 3.18
3639 4065 2.669434 GCATGTGAATGGTCAACAATGC 59.331 45.455 0.00 0.00 38.82 3.56
3866 4472 7.337689 CCACCTTAAGAATGATCAAGAACATCA 59.662 37.037 3.36 0.00 34.74 3.07
3996 5259 0.320073 TAAAGAACGCACGTGGAGGG 60.320 55.000 18.88 1.91 0.00 4.30
4006 5269 2.351738 GCACGTGGAGGGAAAATTTCAG 60.352 50.000 18.88 0.00 0.00 3.02
4015 5278 5.991606 GGAGGGAAAATTTCAGAAGTTTTGG 59.008 40.000 18.32 0.00 33.62 3.28
4122 5385 2.728690 ACGAGTGGTGCAACGTAATA 57.271 45.000 0.00 0.00 38.12 0.98
4183 5446 3.646637 ACCTTATATCAAGGAACGGAGGG 59.353 47.826 9.96 0.00 39.81 4.30
4340 5625 3.806949 TTTATGCCTTGTCAGGTCCTT 57.193 42.857 0.00 0.00 43.18 3.36
4373 5658 2.651455 GACAATTTACTAGGGGCCCAC 58.349 52.381 27.72 13.61 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 2.610859 GGAGGTGGAGGCAGGGAA 60.611 66.667 0.00 0.00 0.00 3.97
125 126 4.065281 GGAGCTGCGGGTACACGT 62.065 66.667 20.35 0.00 35.98 4.49
169 170 3.706373 GGCTCTGGCTTGACGGGA 61.706 66.667 0.00 0.00 38.73 5.14
272 273 2.797278 CGCACCGGGCTATCTCCTT 61.797 63.158 6.32 0.00 41.67 3.36
483 484 4.100084 CGTCCCTGCTGCATCCCA 62.100 66.667 1.31 0.00 0.00 4.37
817 838 2.365105 CGTTGGCCCCCTAGGAGA 60.365 66.667 11.48 0.00 38.24 3.71
854 876 0.738975 CACCGACGCCAAGATCTCTA 59.261 55.000 0.00 0.00 0.00 2.43
855 877 0.965866 TCACCGACGCCAAGATCTCT 60.966 55.000 0.00 0.00 0.00 3.10
856 878 0.103208 ATCACCGACGCCAAGATCTC 59.897 55.000 0.00 0.00 0.00 2.75
857 879 0.179100 CATCACCGACGCCAAGATCT 60.179 55.000 0.00 0.00 0.00 2.75
858 880 1.154205 CCATCACCGACGCCAAGATC 61.154 60.000 0.00 0.00 0.00 2.75
859 881 1.153369 CCATCACCGACGCCAAGAT 60.153 57.895 0.00 0.00 0.00 2.40
860 882 2.264480 CCATCACCGACGCCAAGA 59.736 61.111 0.00 0.00 0.00 3.02
861 883 3.499737 GCCATCACCGACGCCAAG 61.500 66.667 0.00 0.00 0.00 3.61
864 886 4.778143 AAGGCCATCACCGACGCC 62.778 66.667 5.01 0.00 41.96 5.68
865 887 3.499737 CAAGGCCATCACCGACGC 61.500 66.667 5.01 0.00 33.69 5.19
866 888 2.819595 CCAAGGCCATCACCGACG 60.820 66.667 5.01 0.00 33.69 5.12
867 889 0.893727 AAACCAAGGCCATCACCGAC 60.894 55.000 5.01 0.00 33.69 4.79
868 890 0.893270 CAAACCAAGGCCATCACCGA 60.893 55.000 5.01 0.00 33.69 4.69
869 891 1.586028 CAAACCAAGGCCATCACCG 59.414 57.895 5.01 0.00 33.69 4.94
870 892 1.974543 CCAAACCAAGGCCATCACC 59.025 57.895 5.01 0.00 0.00 4.02
871 893 1.293179 GCCAAACCAAGGCCATCAC 59.707 57.895 5.01 0.00 46.50 3.06
872 894 3.790223 GCCAAACCAAGGCCATCA 58.210 55.556 5.01 0.00 46.50 3.07
878 900 3.373565 GGAGCGGCCAAACCAAGG 61.374 66.667 2.24 0.00 39.03 3.61
879 901 3.737172 CGGAGCGGCCAAACCAAG 61.737 66.667 2.24 0.00 39.03 3.61
921 943 9.260002 CTTGATGCTACTTTTGTTAAAAACCAT 57.740 29.630 0.00 0.00 31.94 3.55
922 944 7.223777 GCTTGATGCTACTTTTGTTAAAAACCA 59.776 33.333 0.00 0.00 38.95 3.67
923 945 7.223777 TGCTTGATGCTACTTTTGTTAAAAACC 59.776 33.333 0.00 0.00 43.37 3.27
924 946 8.125728 TGCTTGATGCTACTTTTGTTAAAAAC 57.874 30.769 0.00 0.00 43.37 2.43
925 947 8.599774 GTTGCTTGATGCTACTTTTGTTAAAAA 58.400 29.630 0.00 0.00 42.58 1.94
926 948 7.223777 GGTTGCTTGATGCTACTTTTGTTAAAA 59.776 33.333 5.10 0.00 44.64 1.52
927 949 6.699642 GGTTGCTTGATGCTACTTTTGTTAAA 59.300 34.615 5.10 0.00 44.64 1.52
928 950 6.183360 TGGTTGCTTGATGCTACTTTTGTTAA 60.183 34.615 5.10 0.00 44.64 2.01
929 951 5.300539 TGGTTGCTTGATGCTACTTTTGTTA 59.699 36.000 5.10 0.00 44.64 2.41
930 952 4.099266 TGGTTGCTTGATGCTACTTTTGTT 59.901 37.500 5.10 0.00 44.64 2.83
931 953 3.636300 TGGTTGCTTGATGCTACTTTTGT 59.364 39.130 5.10 0.00 44.64 2.83
932 954 3.983344 GTGGTTGCTTGATGCTACTTTTG 59.017 43.478 5.10 0.00 44.64 2.44
933 955 3.005791 GGTGGTTGCTTGATGCTACTTTT 59.994 43.478 5.10 0.00 44.64 2.27
934 956 2.558359 GGTGGTTGCTTGATGCTACTTT 59.442 45.455 5.10 0.00 44.64 2.66
935 957 2.162681 GGTGGTTGCTTGATGCTACTT 58.837 47.619 5.10 0.00 44.64 2.24
936 958 1.073763 TGGTGGTTGCTTGATGCTACT 59.926 47.619 5.10 0.00 44.64 2.57
937 959 1.200020 GTGGTGGTTGCTTGATGCTAC 59.800 52.381 0.00 0.00 44.55 3.58
938 960 1.202867 TGTGGTGGTTGCTTGATGCTA 60.203 47.619 0.00 0.00 43.37 3.49
939 961 0.467844 TGTGGTGGTTGCTTGATGCT 60.468 50.000 0.00 0.00 43.37 3.79
940 962 0.388659 TTGTGGTGGTTGCTTGATGC 59.611 50.000 0.00 0.00 43.25 3.91
941 963 2.472816 GTTTGTGGTGGTTGCTTGATG 58.527 47.619 0.00 0.00 0.00 3.07
942 964 1.066908 CGTTTGTGGTGGTTGCTTGAT 59.933 47.619 0.00 0.00 0.00 2.57
943 965 0.453793 CGTTTGTGGTGGTTGCTTGA 59.546 50.000 0.00 0.00 0.00 3.02
944 966 0.172352 ACGTTTGTGGTGGTTGCTTG 59.828 50.000 0.00 0.00 0.00 4.01
945 967 0.892063 AACGTTTGTGGTGGTTGCTT 59.108 45.000 0.00 0.00 0.00 3.91
946 968 0.172352 CAACGTTTGTGGTGGTTGCT 59.828 50.000 0.00 0.00 34.13 3.91
947 969 2.659740 CAACGTTTGTGGTGGTTGC 58.340 52.632 0.00 0.00 34.13 4.17
948 970 0.804156 GGCAACGTTTGTGGTGGTTG 60.804 55.000 0.00 0.00 41.92 3.77
949 971 0.968393 AGGCAACGTTTGTGGTGGTT 60.968 50.000 0.00 0.00 46.39 3.67
950 972 0.107116 TAGGCAACGTTTGTGGTGGT 60.107 50.000 0.00 0.00 46.39 4.16
951 973 1.243902 ATAGGCAACGTTTGTGGTGG 58.756 50.000 0.00 0.00 46.39 4.61
952 974 5.804692 TTATATAGGCAACGTTTGTGGTG 57.195 39.130 0.00 0.00 46.39 4.17
953 975 5.883673 ACATTATATAGGCAACGTTTGTGGT 59.116 36.000 0.00 0.00 46.39 4.16
954 976 6.037720 TCACATTATATAGGCAACGTTTGTGG 59.962 38.462 17.48 1.56 46.39 4.17
955 977 7.010697 TCACATTATATAGGCAACGTTTGTG 57.989 36.000 13.50 13.50 46.39 3.33
956 978 7.801716 ATCACATTATATAGGCAACGTTTGT 57.198 32.000 0.00 0.00 46.39 2.83
957 979 9.594038 GTAATCACATTATATAGGCAACGTTTG 57.406 33.333 0.00 0.00 46.39 2.93
958 980 9.555727 AGTAATCACATTATATAGGCAACGTTT 57.444 29.630 0.00 0.00 46.39 3.60
961 983 9.203421 TCAAGTAATCACATTATATAGGCAACG 57.797 33.333 0.00 0.00 46.39 4.10
989 1013 3.201708 AGATTGGGTTTCTGGATGGAGAG 59.798 47.826 0.00 0.00 0.00 3.20
993 1017 3.434309 ACAAGATTGGGTTTCTGGATGG 58.566 45.455 0.00 0.00 0.00 3.51
1008 1032 5.589855 TGATCAATGCCGAATTGTACAAGAT 59.410 36.000 14.65 7.57 45.14 2.40
1011 1035 4.940654 TCTGATCAATGCCGAATTGTACAA 59.059 37.500 11.41 11.41 45.14 2.41
1013 1037 4.332543 TGTCTGATCAATGCCGAATTGTAC 59.667 41.667 0.00 0.00 45.14 2.90
1015 1039 3.346315 TGTCTGATCAATGCCGAATTGT 58.654 40.909 0.00 0.40 45.14 2.71
1017 1041 3.249320 CGATGTCTGATCAATGCCGAATT 59.751 43.478 0.00 0.00 0.00 2.17
1018 1042 2.804527 CGATGTCTGATCAATGCCGAAT 59.195 45.455 0.00 0.00 0.00 3.34
1019 1043 2.204237 CGATGTCTGATCAATGCCGAA 58.796 47.619 0.00 0.00 0.00 4.30
1020 1044 1.136891 ACGATGTCTGATCAATGCCGA 59.863 47.619 0.00 0.00 0.00 5.54
1022 1046 1.869767 GGACGATGTCTGATCAATGCC 59.130 52.381 0.00 0.00 32.47 4.40
1024 1048 3.308053 GTGTGGACGATGTCTGATCAATG 59.692 47.826 0.00 0.00 32.47 2.82
1033 1057 3.057456 AGACAACTAGTGTGGACGATGTC 60.057 47.826 10.67 10.67 41.96 3.06
1035 1059 3.577649 AGACAACTAGTGTGGACGATG 57.422 47.619 0.00 0.00 41.96 3.84
1048 1072 3.449018 CCATGACTGGCTACTAGACAACT 59.551 47.826 0.00 0.00 29.23 3.16
1050 1074 3.447586 GTCCATGACTGGCTACTAGACAA 59.552 47.826 0.00 0.00 42.80 3.18
1052 1076 2.033550 CGTCCATGACTGGCTACTAGAC 59.966 54.545 0.00 0.00 42.80 2.59
1054 1078 1.338337 CCGTCCATGACTGGCTACTAG 59.662 57.143 0.00 0.00 42.80 2.57
1064 1088 0.659427 CATGCATCACCGTCCATGAC 59.341 55.000 0.00 0.00 37.78 3.06
1073 1097 3.260380 AGGAGATAGTAGCATGCATCACC 59.740 47.826 21.98 19.84 0.00 4.02
1074 1098 4.533919 AGGAGATAGTAGCATGCATCAC 57.466 45.455 21.98 14.27 0.00 3.06
1075 1099 4.159321 GCTAGGAGATAGTAGCATGCATCA 59.841 45.833 21.98 0.89 41.21 3.07
1083 1107 5.414765 GGAAGAAGAGCTAGGAGATAGTAGC 59.585 48.000 0.00 0.00 41.77 3.58
1093 1117 3.007398 ACACAAGTGGAAGAAGAGCTAGG 59.993 47.826 5.08 0.00 34.19 3.02
1119 1146 2.481854 CTCTGGAGAAGCGAATGATGG 58.518 52.381 0.00 0.00 0.00 3.51
1131 1158 0.320771 GCCAAAGAACGCTCTGGAGA 60.321 55.000 1.35 0.00 30.03 3.71
1134 1161 2.166270 GAGCCAAAGAACGCTCTGG 58.834 57.895 1.88 0.00 46.48 3.86
1141 1168 1.285950 GTTGCCGGAGCCAAAGAAC 59.714 57.895 5.05 0.00 38.69 3.01
1279 1306 0.391661 TGCCGAACTTGAGGAGCATC 60.392 55.000 0.00 0.00 0.00 3.91
1303 1330 1.070445 GGAGGCGATGATCACTGGG 59.930 63.158 0.00 0.00 0.00 4.45
1330 1357 0.182061 TCATGATCTCCTTGGCAGCC 59.818 55.000 3.66 3.66 0.00 4.85
1364 1391 2.743928 CGGCCTGGTGCAGAAGAC 60.744 66.667 0.00 0.00 43.89 3.01
1393 1420 1.444119 GCTCGTTCAACACCTTGGCA 61.444 55.000 0.00 0.00 0.00 4.92
1418 1445 2.193248 GGCAAAGGAGATCCCGGG 59.807 66.667 16.85 16.85 40.87 5.73
1420 1447 2.193248 GGGGCAAAGGAGATCCCG 59.807 66.667 0.00 0.00 39.66 5.14
1446 1473 2.743928 GTAGCTGCCGCAAGTGCT 60.744 61.111 10.16 10.16 39.10 4.40
1447 1474 4.152625 CGTAGCTGCCGCAAGTGC 62.153 66.667 2.05 0.00 39.10 4.40
1507 1534 2.264794 CGGGTGGGACGGAAAGAG 59.735 66.667 0.00 0.00 0.00 2.85
1516 1543 4.631740 TCCTGCTCACGGGTGGGA 62.632 66.667 2.16 0.00 43.58 4.37
1529 1556 2.125753 GAGCACGCTCACCTCCTG 60.126 66.667 14.10 0.00 42.31 3.86
1541 1568 0.599728 GAGATGGAGCGGATGAGCAC 60.600 60.000 0.00 0.00 40.15 4.40
1542 1569 1.044790 TGAGATGGAGCGGATGAGCA 61.045 55.000 0.00 0.00 40.15 4.26
1552 1579 2.538512 TTGATGCGGATGAGATGGAG 57.461 50.000 0.00 0.00 0.00 3.86
1571 1598 0.468226 TTCACAAGTGGCTCCGACTT 59.532 50.000 0.00 0.00 33.82 3.01
1574 1601 1.070786 GGTTCACAAGTGGCTCCGA 59.929 57.895 0.00 0.00 0.00 4.55
1577 1604 1.202698 ACTCAGGTTCACAAGTGGCTC 60.203 52.381 0.00 0.00 0.00 4.70
1583 1610 4.573900 AGCATCTTACTCAGGTTCACAAG 58.426 43.478 0.00 0.00 0.00 3.16
1584 1611 4.040339 TGAGCATCTTACTCAGGTTCACAA 59.960 41.667 0.00 0.00 39.21 3.33
1612 1642 2.663852 GTTGTGTCCGTCCCGTGG 60.664 66.667 0.00 0.00 0.00 4.94
1613 1643 3.033764 CGTTGTGTCCGTCCCGTG 61.034 66.667 0.00 0.00 0.00 4.94
1627 1657 1.167851 CCATGATTGAGTGCACCGTT 58.832 50.000 14.63 0.00 0.00 4.44
1649 1679 2.430367 GCTGTCCTTGAACCGGGT 59.570 61.111 6.32 0.00 0.00 5.28
1650 1680 2.742372 CGCTGTCCTTGAACCGGG 60.742 66.667 6.32 0.00 0.00 5.73
1664 1694 2.972505 CAAGGTGCCAACGTCGCT 60.973 61.111 8.80 0.00 0.00 4.93
1670 1700 2.594592 ACCGAGCAAGGTGCCAAC 60.595 61.111 2.10 0.00 46.52 3.77
1671 1701 2.281484 GACCGAGCAAGGTGCCAA 60.281 61.111 7.89 0.00 46.52 4.52
1674 1704 1.672356 ACATGACCGAGCAAGGTGC 60.672 57.895 7.89 0.00 46.09 5.01
1686 1716 0.798776 CACCGCCTCTTTCACATGAC 59.201 55.000 0.00 0.00 0.00 3.06
1688 1718 1.503542 GCACCGCCTCTTTCACATG 59.496 57.895 0.00 0.00 0.00 3.21
1718 1748 1.414181 CAAGTCGGATATGGTGAGGCT 59.586 52.381 0.00 0.00 0.00 4.58
1721 1751 3.458189 GGAACAAGTCGGATATGGTGAG 58.542 50.000 0.00 0.00 0.00 3.51
1727 1757 2.884894 GACGGGAACAAGTCGGATAT 57.115 50.000 0.00 0.00 0.00 1.63
1751 1781 2.218037 CTCAGAGTGCGTGCTAGCCA 62.218 60.000 13.29 0.00 36.02 4.75
1759 1789 2.356793 GTGCTGCTCAGAGTGCGT 60.357 61.111 0.00 0.00 0.00 5.24
1797 1827 3.135056 AATAGCGACGAGTCCCGGC 62.135 63.158 0.00 0.00 44.56 6.13
1798 1828 1.299165 CAATAGCGACGAGTCCCGG 60.299 63.158 0.00 0.00 43.93 5.73
1801 1831 1.134560 AGGAACAATAGCGACGAGTCC 59.865 52.381 0.00 0.00 0.00 3.85
1807 1837 1.659098 CGTTCCAGGAACAATAGCGAC 59.341 52.381 28.47 2.78 42.05 5.19
1808 1838 2.004583 CGTTCCAGGAACAATAGCGA 57.995 50.000 28.47 0.00 42.05 4.93
1809 1839 0.373716 GCGTTCCAGGAACAATAGCG 59.626 55.000 28.47 16.32 42.05 4.26
1815 1845 0.669318 GATGACGCGTTCCAGGAACA 60.669 55.000 28.47 11.90 42.05 3.18
1835 1865 2.902486 ACCTTCTCTCAAGATGCTCACA 59.098 45.455 0.00 0.00 0.00 3.58
1836 1866 3.520569 GACCTTCTCTCAAGATGCTCAC 58.479 50.000 0.00 0.00 0.00 3.51
1846 1876 1.362584 TCCATGGAGGACCTTCTCTCA 59.637 52.381 11.44 0.00 43.07 3.27
1863 1893 1.616725 GGATTTCCTGGTGCACATCCA 60.617 52.381 20.43 6.78 31.99 3.41
1880 1913 3.570540 TCAAGAGGACATCGATCAGGAT 58.429 45.455 0.00 0.00 0.00 3.24
1881 1914 2.954989 CTCAAGAGGACATCGATCAGGA 59.045 50.000 0.00 0.00 0.00 3.86
2007 2040 9.357652 GTGACATGCATGAATATTTTGTTAGTT 57.642 29.630 32.75 4.26 0.00 2.24
2009 2042 7.975058 TGGTGACATGCATGAATATTTTGTTAG 59.025 33.333 32.75 1.29 33.40 2.34
2010 2043 7.834803 TGGTGACATGCATGAATATTTTGTTA 58.165 30.769 32.75 2.51 33.40 2.41
2011 2044 6.699366 TGGTGACATGCATGAATATTTTGTT 58.301 32.000 32.75 6.24 33.40 2.83
2012 2045 6.283544 TGGTGACATGCATGAATATTTTGT 57.716 33.333 32.75 8.74 33.40 2.83
2014 2047 8.618702 TTTTTGGTGACATGCATGAATATTTT 57.381 26.923 32.75 8.66 42.32 1.82
2016 2049 9.887629 TTATTTTTGGTGACATGCATGAATATT 57.112 25.926 32.75 10.28 42.32 1.28
2020 2053 9.531942 GATATTATTTTTGGTGACATGCATGAA 57.468 29.630 32.75 17.28 42.32 2.57
2021 2054 8.693625 TGATATTATTTTTGGTGACATGCATGA 58.306 29.630 32.75 9.00 42.32 3.07
2022 2055 8.874744 TGATATTATTTTTGGTGACATGCATG 57.125 30.769 25.09 25.09 42.32 4.06
2089 2122 9.838975 CTCACAAAATGTTAGTGCATGTTATAA 57.161 29.630 0.00 0.00 33.44 0.98
2090 2123 9.008965 ACTCACAAAATGTTAGTGCATGTTATA 57.991 29.630 0.00 0.00 33.93 0.98
2091 2124 7.885297 ACTCACAAAATGTTAGTGCATGTTAT 58.115 30.769 0.00 0.00 33.93 1.89
2092 2125 7.270757 ACTCACAAAATGTTAGTGCATGTTA 57.729 32.000 0.00 0.00 33.93 2.41
2093 2126 6.147864 ACTCACAAAATGTTAGTGCATGTT 57.852 33.333 0.00 0.00 33.93 2.71
2094 2127 5.772825 ACTCACAAAATGTTAGTGCATGT 57.227 34.783 0.00 0.00 33.93 3.21
2095 2128 6.207928 TCAACTCACAAAATGTTAGTGCATG 58.792 36.000 0.00 0.00 35.25 4.06
2096 2129 6.389830 TCAACTCACAAAATGTTAGTGCAT 57.610 33.333 0.00 0.00 35.25 3.96
2097 2130 5.826601 TCAACTCACAAAATGTTAGTGCA 57.173 34.783 0.00 0.00 35.25 4.57
2098 2131 7.141363 AGATTCAACTCACAAAATGTTAGTGC 58.859 34.615 0.00 0.00 35.25 4.40
2099 2132 9.520204 AAAGATTCAACTCACAAAATGTTAGTG 57.480 29.630 0.00 0.00 35.25 2.74
2100 2133 9.520204 CAAAGATTCAACTCACAAAATGTTAGT 57.480 29.630 0.00 0.00 36.47 2.24
2101 2134 8.971321 CCAAAGATTCAACTCACAAAATGTTAG 58.029 33.333 0.00 0.00 0.00 2.34
2102 2135 8.474025 ACCAAAGATTCAACTCACAAAATGTTA 58.526 29.630 0.00 0.00 0.00 2.41
2103 2136 7.330262 ACCAAAGATTCAACTCACAAAATGTT 58.670 30.769 0.00 0.00 0.00 2.71
2104 2137 6.877236 ACCAAAGATTCAACTCACAAAATGT 58.123 32.000 0.00 0.00 0.00 2.71
2105 2138 6.979817 TGACCAAAGATTCAACTCACAAAATG 59.020 34.615 0.00 0.00 0.00 2.32
2106 2139 7.111247 TGACCAAAGATTCAACTCACAAAAT 57.889 32.000 0.00 0.00 0.00 1.82
2107 2140 6.522625 TGACCAAAGATTCAACTCACAAAA 57.477 33.333 0.00 0.00 0.00 2.44
2108 2141 6.522625 TTGACCAAAGATTCAACTCACAAA 57.477 33.333 0.00 0.00 0.00 2.83
2109 2142 6.522625 TTTGACCAAAGATTCAACTCACAA 57.477 33.333 0.00 0.00 31.42 3.33
2110 2143 6.522625 TTTTGACCAAAGATTCAACTCACA 57.477 33.333 0.00 0.00 31.42 3.58
2111 2144 7.706179 TCAATTTTGACCAAAGATTCAACTCAC 59.294 33.333 0.00 0.00 31.42 3.51
2112 2145 7.780064 TCAATTTTGACCAAAGATTCAACTCA 58.220 30.769 0.00 0.00 31.42 3.41
2113 2146 7.095899 GCTCAATTTTGACCAAAGATTCAACTC 60.096 37.037 0.00 0.00 31.42 3.01
2114 2147 6.703165 GCTCAATTTTGACCAAAGATTCAACT 59.297 34.615 0.00 0.00 31.42 3.16
2115 2148 6.479660 TGCTCAATTTTGACCAAAGATTCAAC 59.520 34.615 0.00 0.00 31.42 3.18
2116 2149 6.479660 GTGCTCAATTTTGACCAAAGATTCAA 59.520 34.615 0.00 0.00 32.90 2.69
2117 2150 5.984926 GTGCTCAATTTTGACCAAAGATTCA 59.015 36.000 0.00 0.00 32.90 2.57
2118 2151 5.984926 TGTGCTCAATTTTGACCAAAGATTC 59.015 36.000 0.00 0.00 32.90 2.52
2119 2152 5.916318 TGTGCTCAATTTTGACCAAAGATT 58.084 33.333 0.00 0.00 32.90 2.40
2120 2153 5.534207 TGTGCTCAATTTTGACCAAAGAT 57.466 34.783 0.00 0.00 32.90 2.40
2121 2154 4.998671 TGTGCTCAATTTTGACCAAAGA 57.001 36.364 0.00 0.00 32.90 2.52
2122 2155 6.607735 ATTTGTGCTCAATTTTGACCAAAG 57.392 33.333 1.43 0.00 33.32 2.77
2123 2156 6.998968 AATTTGTGCTCAATTTTGACCAAA 57.001 29.167 1.43 8.96 33.32 3.28
2124 2157 9.770097 TTATAATTTGTGCTCAATTTTGACCAA 57.230 25.926 12.30 0.00 33.32 3.67
2125 2158 9.770097 TTTATAATTTGTGCTCAATTTTGACCA 57.230 25.926 12.30 0.00 33.32 4.02
2128 2161 9.434420 CCCTTTATAATTTGTGCTCAATTTTGA 57.566 29.630 12.30 0.00 33.32 2.69
2129 2162 8.667463 CCCCTTTATAATTTGTGCTCAATTTTG 58.333 33.333 12.30 0.00 33.32 2.44
2130 2163 8.601546 TCCCCTTTATAATTTGTGCTCAATTTT 58.398 29.630 12.30 7.79 33.32 1.82
2131 2164 8.040727 GTCCCCTTTATAATTTGTGCTCAATTT 58.959 33.333 11.88 11.88 33.32 1.82
2132 2165 7.400052 AGTCCCCTTTATAATTTGTGCTCAATT 59.600 33.333 1.43 0.00 33.32 2.32
2133 2166 6.897413 AGTCCCCTTTATAATTTGTGCTCAAT 59.103 34.615 1.43 0.00 33.32 2.57
2134 2167 6.252995 AGTCCCCTTTATAATTTGTGCTCAA 58.747 36.000 0.00 0.00 0.00 3.02
2135 2168 5.826643 AGTCCCCTTTATAATTTGTGCTCA 58.173 37.500 0.00 0.00 0.00 4.26
2136 2169 7.875327 TTAGTCCCCTTTATAATTTGTGCTC 57.125 36.000 0.00 0.00 0.00 4.26
2137 2170 9.930158 TTATTAGTCCCCTTTATAATTTGTGCT 57.070 29.630 0.00 0.00 0.00 4.40
2145 2178 9.910267 GTCCTGTTTTATTAGTCCCCTTTATAA 57.090 33.333 0.00 0.00 0.00 0.98
2146 2179 8.206189 CGTCCTGTTTTATTAGTCCCCTTTATA 58.794 37.037 0.00 0.00 0.00 0.98
2147 2180 7.052248 CGTCCTGTTTTATTAGTCCCCTTTAT 58.948 38.462 0.00 0.00 0.00 1.40
2148 2181 6.408869 CGTCCTGTTTTATTAGTCCCCTTTA 58.591 40.000 0.00 0.00 0.00 1.85
2149 2182 5.250982 CGTCCTGTTTTATTAGTCCCCTTT 58.749 41.667 0.00 0.00 0.00 3.11
2150 2183 4.324022 CCGTCCTGTTTTATTAGTCCCCTT 60.324 45.833 0.00 0.00 0.00 3.95
2151 2184 3.199289 CCGTCCTGTTTTATTAGTCCCCT 59.801 47.826 0.00 0.00 0.00 4.79
2152 2185 3.198417 TCCGTCCTGTTTTATTAGTCCCC 59.802 47.826 0.00 0.00 0.00 4.81
2153 2186 4.476628 TCCGTCCTGTTTTATTAGTCCC 57.523 45.455 0.00 0.00 0.00 4.46
2154 2187 5.425630 ACATCCGTCCTGTTTTATTAGTCC 58.574 41.667 0.00 0.00 0.00 3.85
2155 2188 7.263496 ACTACATCCGTCCTGTTTTATTAGTC 58.737 38.462 0.00 0.00 0.00 2.59
2156 2189 7.179076 ACTACATCCGTCCTGTTTTATTAGT 57.821 36.000 0.00 0.00 0.00 2.24
2157 2190 8.627403 TCTACTACATCCGTCCTGTTTTATTAG 58.373 37.037 0.00 0.00 0.00 1.73
2158 2191 8.523915 TCTACTACATCCGTCCTGTTTTATTA 57.476 34.615 0.00 0.00 0.00 0.98
2159 2192 7.414222 TCTACTACATCCGTCCTGTTTTATT 57.586 36.000 0.00 0.00 0.00 1.40
2160 2193 7.123847 ACTTCTACTACATCCGTCCTGTTTTAT 59.876 37.037 0.00 0.00 0.00 1.40
2161 2194 6.435277 ACTTCTACTACATCCGTCCTGTTTTA 59.565 38.462 0.00 0.00 0.00 1.52
2162 2195 5.245526 ACTTCTACTACATCCGTCCTGTTTT 59.754 40.000 0.00 0.00 0.00 2.43
2163 2196 4.771054 ACTTCTACTACATCCGTCCTGTTT 59.229 41.667 0.00 0.00 0.00 2.83
2164 2197 4.342359 ACTTCTACTACATCCGTCCTGTT 58.658 43.478 0.00 0.00 0.00 3.16
2165 2198 3.965694 ACTTCTACTACATCCGTCCTGT 58.034 45.455 0.00 0.00 0.00 4.00
2166 2199 7.925043 ATATACTTCTACTACATCCGTCCTG 57.075 40.000 0.00 0.00 0.00 3.86
2203 2236 5.156608 AGTTTGTTTAGGTGGTATAGCGT 57.843 39.130 0.00 0.00 0.00 5.07
2302 2335 9.778741 TGAATAAAGTAAAGGCTTCGATGATAT 57.221 29.630 0.00 0.00 0.00 1.63
2303 2336 9.042008 GTGAATAAAGTAAAGGCTTCGATGATA 57.958 33.333 0.00 0.00 0.00 2.15
2304 2337 7.770897 AGTGAATAAAGTAAAGGCTTCGATGAT 59.229 33.333 0.00 0.00 0.00 2.45
2305 2338 7.064609 CAGTGAATAAAGTAAAGGCTTCGATGA 59.935 37.037 0.00 0.00 0.00 2.92
2306 2339 7.148407 ACAGTGAATAAAGTAAAGGCTTCGATG 60.148 37.037 0.00 0.00 0.00 3.84
2307 2340 6.879458 ACAGTGAATAAAGTAAAGGCTTCGAT 59.121 34.615 0.00 0.00 0.00 3.59
2308 2341 6.147164 CACAGTGAATAAAGTAAAGGCTTCGA 59.853 38.462 0.00 0.00 0.00 3.71
2309 2342 6.307155 CACAGTGAATAAAGTAAAGGCTTCG 58.693 40.000 0.00 0.00 0.00 3.79
2310 2343 6.086871 GCACAGTGAATAAAGTAAAGGCTTC 58.913 40.000 4.15 0.00 0.00 3.86
2311 2344 5.048013 GGCACAGTGAATAAAGTAAAGGCTT 60.048 40.000 4.15 0.00 0.00 4.35
2312 2345 4.459337 GGCACAGTGAATAAAGTAAAGGCT 59.541 41.667 4.15 0.00 0.00 4.58
2313 2346 4.217550 TGGCACAGTGAATAAAGTAAAGGC 59.782 41.667 4.15 0.00 0.00 4.35
2314 2347 5.957842 TGGCACAGTGAATAAAGTAAAGG 57.042 39.130 4.15 0.00 0.00 3.11
2383 2416 9.219603 TCTAATGAAACGAATCAGTTTGAGATT 57.780 29.630 7.66 0.00 43.54 2.40
2384 2417 8.660373 GTCTAATGAAACGAATCAGTTTGAGAT 58.340 33.333 7.66 0.00 43.54 2.75
2385 2418 7.872993 AGTCTAATGAAACGAATCAGTTTGAGA 59.127 33.333 7.66 0.00 43.54 3.27
2386 2419 8.023050 AGTCTAATGAAACGAATCAGTTTGAG 57.977 34.615 7.66 0.00 43.54 3.02
2387 2420 7.655732 TGAGTCTAATGAAACGAATCAGTTTGA 59.344 33.333 7.66 1.45 43.54 2.69
2388 2421 7.742089 GTGAGTCTAATGAAACGAATCAGTTTG 59.258 37.037 7.66 0.00 43.54 2.93
2389 2422 7.657761 AGTGAGTCTAATGAAACGAATCAGTTT 59.342 33.333 0.00 3.64 45.85 2.66
2390 2423 7.155328 AGTGAGTCTAATGAAACGAATCAGTT 58.845 34.615 0.00 0.00 33.25 3.16
2391 2424 6.692486 AGTGAGTCTAATGAAACGAATCAGT 58.308 36.000 0.00 0.00 33.20 3.41
2392 2425 7.588143 AAGTGAGTCTAATGAAACGAATCAG 57.412 36.000 0.00 0.00 33.20 2.90
2393 2426 7.441157 ACAAAGTGAGTCTAATGAAACGAATCA 59.559 33.333 0.00 0.00 30.45 2.57
2394 2427 7.742089 CACAAAGTGAGTCTAATGAAACGAATC 59.258 37.037 0.00 0.00 35.23 2.52
2395 2428 7.307989 CCACAAAGTGAGTCTAATGAAACGAAT 60.308 37.037 0.00 0.00 35.23 3.34
2396 2429 6.018262 CCACAAAGTGAGTCTAATGAAACGAA 60.018 38.462 0.00 0.00 35.23 3.85
2397 2430 5.465390 CCACAAAGTGAGTCTAATGAAACGA 59.535 40.000 0.00 0.00 35.23 3.85
2398 2431 5.679906 CCACAAAGTGAGTCTAATGAAACG 58.320 41.667 0.00 0.00 35.23 3.60
2399 2432 5.008613 TGCCACAAAGTGAGTCTAATGAAAC 59.991 40.000 0.00 0.00 35.23 2.78
2400 2433 5.129634 TGCCACAAAGTGAGTCTAATGAAA 58.870 37.500 0.00 0.00 35.23 2.69
2401 2434 4.713553 TGCCACAAAGTGAGTCTAATGAA 58.286 39.130 0.00 0.00 35.23 2.57
2402 2435 4.350368 TGCCACAAAGTGAGTCTAATGA 57.650 40.909 0.00 0.00 35.23 2.57
2403 2436 4.940046 AGATGCCACAAAGTGAGTCTAATG 59.060 41.667 0.00 0.00 35.23 1.90
2404 2437 4.940046 CAGATGCCACAAAGTGAGTCTAAT 59.060 41.667 0.00 0.00 35.23 1.73
2405 2438 4.040339 TCAGATGCCACAAAGTGAGTCTAA 59.960 41.667 0.00 0.00 35.23 2.10
2406 2439 3.578282 TCAGATGCCACAAAGTGAGTCTA 59.422 43.478 0.00 0.00 35.23 2.59
2407 2440 2.369860 TCAGATGCCACAAAGTGAGTCT 59.630 45.455 0.00 0.00 35.23 3.24
2408 2441 2.771089 TCAGATGCCACAAAGTGAGTC 58.229 47.619 0.00 0.00 35.23 3.36
2409 2442 2.936919 TCAGATGCCACAAAGTGAGT 57.063 45.000 0.00 0.00 35.23 3.41
2410 2443 3.144506 ACTTCAGATGCCACAAAGTGAG 58.855 45.455 0.00 0.00 35.23 3.51
2411 2444 3.213206 ACTTCAGATGCCACAAAGTGA 57.787 42.857 0.00 0.00 35.23 3.41
2412 2445 6.932356 ATATACTTCAGATGCCACAAAGTG 57.068 37.500 0.00 0.00 32.71 3.16
2413 2446 9.461312 TTTAATATACTTCAGATGCCACAAAGT 57.539 29.630 0.00 0.00 34.70 2.66
3492 3531 4.214119 CCAGACACACAAAGTTCCACATAG 59.786 45.833 0.00 0.00 0.00 2.23
3576 3615 8.370493 ACTGTCATTAATATCATCTTTCCGTG 57.630 34.615 0.00 0.00 0.00 4.94
3639 4065 3.657325 CGTGTGTGCGTCTACGTTTTAAG 60.657 47.826 0.00 0.00 42.22 1.85
3669 4263 1.102154 CATTGTGTGTGGTGGTGTGT 58.898 50.000 0.00 0.00 0.00 3.72
3866 4472 2.366916 CGAAGCAGATAAGGTGGGAGAT 59.633 50.000 0.00 0.00 0.00 2.75
3967 5230 3.456677 GTGCGTTCTTTAATTTTTGCGC 58.543 40.909 0.00 0.00 43.26 6.09
3996 5259 4.211164 CCGCCCAAAACTTCTGAAATTTTC 59.789 41.667 6.60 2.05 0.00 2.29
4006 5269 2.163613 CTGTAATCCCGCCCAAAACTTC 59.836 50.000 0.00 0.00 0.00 3.01
4015 5278 3.464111 TTAGTAAGCTGTAATCCCGCC 57.536 47.619 0.00 0.00 0.00 6.13
4094 5357 2.028130 TGCACCACTCGTTTGGATTTT 58.972 42.857 11.38 0.00 39.24 1.82
4183 5446 4.142093 TGTCGGGCTTACTGGTAAATACTC 60.142 45.833 0.00 0.00 0.00 2.59
4340 5625 0.768622 AATTGTCCCACCGAGTCCAA 59.231 50.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.