Multiple sequence alignment - TraesCS2A01G463700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G463700 chr2A 100.000 5903 0 0 1 5903 709619396 709625298 0.000000e+00 10901.0
1 TraesCS2A01G463700 chr2A 99.683 315 1 0 589 903 709625000 709625314 1.430000e-160 577.0
2 TraesCS2A01G463700 chr2A 99.666 299 1 0 5605 5903 709619984 709620282 1.120000e-151 547.0
3 TraesCS2A01G463700 chr2A 92.096 291 20 2 23 310 158051007 158051297 1.980000e-109 407.0
4 TraesCS2A01G463700 chr6A 98.937 2822 29 1 589 3409 184821868 184824689 0.000000e+00 5044.0
5 TraesCS2A01G463700 chr6A 99.119 2496 22 0 3408 5903 184824865 184827360 0.000000e+00 4488.0
6 TraesCS2A01G463700 chr6A 98.730 315 4 0 589 903 184827062 184827376 1.440000e-155 560.0
7 TraesCS2A01G463700 chr6A 98.333 300 5 0 5604 5903 184821867 184822166 1.460000e-145 527.0
8 TraesCS2A01G463700 chr6A 93.571 280 17 1 29 307 140608405 140608126 3.290000e-112 416.0
9 TraesCS2A01G463700 chr7A 95.333 1907 86 3 1505 3409 706121147 706123052 0.000000e+00 3025.0
10 TraesCS2A01G463700 chr7A 94.002 1884 103 6 3933 5813 706124893 706126769 0.000000e+00 2844.0
11 TraesCS2A01G463700 chr7A 91.437 689 51 7 825 1512 706120077 706120758 0.000000e+00 939.0
12 TraesCS2A01G463700 chr7A 97.271 513 14 0 3408 3920 706123228 706123740 0.000000e+00 870.0
13 TraesCS2A01G463700 chr7A 93.594 281 16 2 23 301 660936552 660936832 9.150000e-113 418.0
14 TraesCS2A01G463700 chr7A 94.161 274 15 1 29 301 625741270 625740997 3.290000e-112 416.0
15 TraesCS2A01G463700 chr7A 93.525 278 17 1 27 303 560316489 560316212 4.260000e-111 412.0
16 TraesCS2A01G463700 chr7A 91.213 239 17 2 589 827 706118354 706118588 7.380000e-84 322.0
17 TraesCS2A01G463700 chr7A 90.871 241 18 2 5603 5843 706118352 706118588 2.650000e-83 320.0
18 TraesCS2A01G463700 chr7A 94.444 108 5 1 796 903 706127076 706127182 1.320000e-36 165.0
19 TraesCS2A01G463700 chr7A 94.565 92 4 1 5812 5903 706127076 706127166 2.220000e-29 141.0
20 TraesCS2A01G463700 chr4B 98.095 315 6 0 589 903 649838124 649837810 3.110000e-152 549.0
21 TraesCS2A01G463700 chr4B 97.659 299 7 0 5605 5903 649838124 649837826 1.130000e-141 514.0
22 TraesCS2A01G463700 chr4B 94.161 274 15 1 29 301 479214696 479214969 3.290000e-112 416.0
23 TraesCS2A01G463700 chr7B 92.256 297 20 3 27 322 81417772 81417478 9.150000e-113 418.0
24 TraesCS2A01G463700 chr6B 93.863 277 16 1 26 301 518679774 518680050 3.290000e-112 416.0
25 TraesCS2A01G463700 chr3A 94.161 274 15 1 29 301 724060394 724060667 3.290000e-112 416.0
26 TraesCS2A01G463700 chr2D 83.333 78 11 2 3123 3199 409266292 409266216 2.950000e-08 71.3
27 TraesCS2A01G463700 chr7D 87.931 58 7 0 3142 3199 570240052 570240109 1.060000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G463700 chr2A 709619396 709625298 5902 False 10901.00 10901 100.00000 1 5903 1 chr2A.!!$F2 5902
1 TraesCS2A01G463700 chr6A 184821867 184827376 5509 False 2654.75 5044 98.77975 589 5903 4 chr6A.!!$F1 5314
2 TraesCS2A01G463700 chr7A 706118352 706127182 8830 False 1078.25 3025 93.64200 589 5903 8 chr7A.!!$F2 5314

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.250234 TGTACATGCCCTCAGTCAGC 59.750 55.000 0.00 0.0 0.00 4.26 F
309 310 0.462759 GTACATGCCCTCAGTCAGCC 60.463 60.000 0.00 0.0 0.00 4.85 F
310 311 0.909133 TACATGCCCTCAGTCAGCCA 60.909 55.000 0.00 0.0 0.00 4.75 F
335 336 1.134098 CAGGAGTGAACCCACACACTT 60.134 52.381 0.00 0.0 45.54 3.16 F
1440 2933 1.409427 GAGATTCGAACCTCCGGACAT 59.591 52.381 8.48 0.0 0.00 3.06 F
3276 5167 0.179092 TGCCAGTGATCGATGAGCTG 60.179 55.000 0.54 8.0 0.00 4.24 F
3834 5902 2.025887 AGGGCATCCGATCAGTTTTCTT 60.026 45.455 0.00 0.0 38.33 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2323 4214 3.028850 CAGGCCATCCATTGTCATCTTT 58.971 45.455 5.01 0.0 33.74 2.52 R
2388 4279 2.172082 ACATGCTGCATGGACAGATAGT 59.828 45.455 37.16 16.9 45.16 2.12 R
2413 4304 5.062809 GCTGAATACTCTTCTTACACTGTGC 59.937 44.000 7.90 0.0 0.00 4.57 R
2435 4326 1.260544 GCCAATGAAACCCTGAAGCT 58.739 50.000 0.00 0.0 0.00 3.74 R
3521 5589 1.292223 GTAGGCCACTGAGCGACAA 59.708 57.895 5.01 0.0 0.00 3.18 R
4131 7339 1.554160 CACTTGGGCTGACAGAGAGAT 59.446 52.381 6.65 0.0 0.00 2.75 R
5819 9338 1.482593 GATGAGAAGAGGGGAAAGCGA 59.517 52.381 0.00 0.0 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.490217 GCGTGCGCTCTCTCCTAA 59.510 61.111 9.73 0.00 38.26 2.69
18 19 1.066587 GCGTGCGCTCTCTCCTAAT 59.933 57.895 9.73 0.00 38.26 1.73
19 20 0.937231 GCGTGCGCTCTCTCCTAATC 60.937 60.000 9.73 0.00 38.26 1.75
20 21 0.382158 CGTGCGCTCTCTCCTAATCA 59.618 55.000 9.73 0.00 0.00 2.57
21 22 1.846541 GTGCGCTCTCTCCTAATCAC 58.153 55.000 9.73 0.00 0.00 3.06
22 23 1.407258 GTGCGCTCTCTCCTAATCACT 59.593 52.381 9.73 0.00 0.00 3.41
23 24 2.103373 TGCGCTCTCTCCTAATCACTT 58.897 47.619 9.73 0.00 0.00 3.16
24 25 3.066900 GTGCGCTCTCTCCTAATCACTTA 59.933 47.826 9.73 0.00 0.00 2.24
25 26 3.699538 TGCGCTCTCTCCTAATCACTTAA 59.300 43.478 9.73 0.00 0.00 1.85
26 27 4.342378 TGCGCTCTCTCCTAATCACTTAAT 59.658 41.667 9.73 0.00 0.00 1.40
27 28 4.920927 GCGCTCTCTCCTAATCACTTAATC 59.079 45.833 0.00 0.00 0.00 1.75
28 29 5.508153 GCGCTCTCTCCTAATCACTTAATCA 60.508 44.000 0.00 0.00 0.00 2.57
29 30 6.148948 CGCTCTCTCCTAATCACTTAATCAG 58.851 44.000 0.00 0.00 0.00 2.90
30 31 6.454795 GCTCTCTCCTAATCACTTAATCAGG 58.545 44.000 0.00 0.00 0.00 3.86
31 32 6.518200 GCTCTCTCCTAATCACTTAATCAGGG 60.518 46.154 0.00 0.00 0.00 4.45
32 33 5.305644 TCTCTCCTAATCACTTAATCAGGGC 59.694 44.000 0.00 0.00 0.00 5.19
33 34 4.968719 TCTCCTAATCACTTAATCAGGGCA 59.031 41.667 0.00 0.00 0.00 5.36
34 35 5.608437 TCTCCTAATCACTTAATCAGGGCAT 59.392 40.000 0.00 0.00 0.00 4.40
35 36 5.624159 TCCTAATCACTTAATCAGGGCATG 58.376 41.667 0.00 0.00 0.00 4.06
36 37 5.132648 TCCTAATCACTTAATCAGGGCATGT 59.867 40.000 0.00 0.00 0.00 3.21
37 38 6.328934 TCCTAATCACTTAATCAGGGCATGTA 59.671 38.462 0.00 0.00 0.00 2.29
38 39 6.428159 CCTAATCACTTAATCAGGGCATGTAC 59.572 42.308 0.00 0.00 0.00 2.90
39 40 4.835284 TCACTTAATCAGGGCATGTACA 57.165 40.909 0.00 0.00 0.00 2.90
40 41 5.172687 TCACTTAATCAGGGCATGTACAA 57.827 39.130 0.00 0.00 0.00 2.41
41 42 5.754782 TCACTTAATCAGGGCATGTACAAT 58.245 37.500 0.00 0.00 0.00 2.71
42 43 5.589855 TCACTTAATCAGGGCATGTACAATG 59.410 40.000 0.00 0.12 0.00 2.82
43 44 5.589855 CACTTAATCAGGGCATGTACAATGA 59.410 40.000 0.00 0.15 0.00 2.57
44 45 6.263842 CACTTAATCAGGGCATGTACAATGAT 59.736 38.462 0.00 2.61 0.00 2.45
45 46 6.263842 ACTTAATCAGGGCATGTACAATGATG 59.736 38.462 0.00 0.00 0.00 3.07
46 47 2.300433 TCAGGGCATGTACAATGATGC 58.700 47.619 10.12 10.12 43.60 3.91
47 48 2.092267 TCAGGGCATGTACAATGATGCT 60.092 45.455 16.47 0.00 43.77 3.79
48 49 3.136260 TCAGGGCATGTACAATGATGCTA 59.864 43.478 16.47 1.20 43.77 3.49
49 50 4.077108 CAGGGCATGTACAATGATGCTAT 58.923 43.478 16.47 5.35 43.77 2.97
50 51 4.521639 CAGGGCATGTACAATGATGCTATT 59.478 41.667 16.47 3.06 43.77 1.73
51 52 5.010314 CAGGGCATGTACAATGATGCTATTT 59.990 40.000 16.47 1.05 43.77 1.40
52 53 5.599656 AGGGCATGTACAATGATGCTATTTT 59.400 36.000 16.47 0.00 43.77 1.82
53 54 6.777091 AGGGCATGTACAATGATGCTATTTTA 59.223 34.615 16.47 0.00 43.77 1.52
54 55 7.040201 AGGGCATGTACAATGATGCTATTTTAG 60.040 37.037 16.47 0.00 43.77 1.85
55 56 7.086376 GGCATGTACAATGATGCTATTTTAGG 58.914 38.462 16.47 0.00 43.77 2.69
56 57 7.040478 GGCATGTACAATGATGCTATTTTAGGA 60.040 37.037 16.47 0.00 43.77 2.94
57 58 8.019669 GCATGTACAATGATGCTATTTTAGGAG 58.980 37.037 11.12 0.00 41.52 3.69
58 59 9.060347 CATGTACAATGATGCTATTTTAGGAGT 57.940 33.333 0.00 0.00 0.00 3.85
59 60 8.437360 TGTACAATGATGCTATTTTAGGAGTG 57.563 34.615 0.00 0.00 0.00 3.51
60 61 8.046708 TGTACAATGATGCTATTTTAGGAGTGT 58.953 33.333 0.00 0.00 0.00 3.55
61 62 7.559590 ACAATGATGCTATTTTAGGAGTGTC 57.440 36.000 0.00 0.00 0.00 3.67
62 63 7.112122 ACAATGATGCTATTTTAGGAGTGTCA 58.888 34.615 0.00 0.00 0.00 3.58
63 64 7.066284 ACAATGATGCTATTTTAGGAGTGTCAC 59.934 37.037 0.00 0.00 0.00 3.67
64 65 5.109210 TGATGCTATTTTAGGAGTGTCACG 58.891 41.667 0.00 0.00 0.00 4.35
65 66 4.530710 TGCTATTTTAGGAGTGTCACGT 57.469 40.909 0.00 0.00 0.00 4.49
66 67 5.648178 TGCTATTTTAGGAGTGTCACGTA 57.352 39.130 0.00 0.00 0.00 3.57
67 68 5.647589 TGCTATTTTAGGAGTGTCACGTAG 58.352 41.667 0.00 0.00 0.00 3.51
68 69 5.041940 GCTATTTTAGGAGTGTCACGTAGG 58.958 45.833 0.00 0.00 0.00 3.18
69 70 5.163581 GCTATTTTAGGAGTGTCACGTAGGA 60.164 44.000 0.00 0.00 0.00 2.94
70 71 5.934402 ATTTTAGGAGTGTCACGTAGGAT 57.066 39.130 0.00 0.00 0.00 3.24
71 72 7.255381 GCTATTTTAGGAGTGTCACGTAGGATA 60.255 40.741 0.00 0.00 0.00 2.59
72 73 6.839124 TTTTAGGAGTGTCACGTAGGATAA 57.161 37.500 0.00 0.00 0.00 1.75
73 74 6.839124 TTTAGGAGTGTCACGTAGGATAAA 57.161 37.500 0.00 0.00 0.00 1.40
74 75 7.414222 TTTAGGAGTGTCACGTAGGATAAAT 57.586 36.000 0.00 0.00 0.00 1.40
75 76 5.263968 AGGAGTGTCACGTAGGATAAATG 57.736 43.478 0.00 0.00 0.00 2.32
76 77 4.954202 AGGAGTGTCACGTAGGATAAATGA 59.046 41.667 0.00 0.00 0.00 2.57
77 78 5.598830 AGGAGTGTCACGTAGGATAAATGAT 59.401 40.000 0.00 0.00 0.00 2.45
78 79 5.692204 GGAGTGTCACGTAGGATAAATGATG 59.308 44.000 0.00 0.00 0.00 3.07
79 80 6.461092 GGAGTGTCACGTAGGATAAATGATGA 60.461 42.308 0.00 0.00 0.00 2.92
80 81 6.507900 AGTGTCACGTAGGATAAATGATGAG 58.492 40.000 0.00 0.00 0.00 2.90
81 82 5.692204 GTGTCACGTAGGATAAATGATGAGG 59.308 44.000 0.00 0.00 0.00 3.86
82 83 5.362717 TGTCACGTAGGATAAATGATGAGGT 59.637 40.000 0.00 0.00 0.00 3.85
83 84 5.692204 GTCACGTAGGATAAATGATGAGGTG 59.308 44.000 0.00 0.00 0.00 4.00
84 85 5.596772 TCACGTAGGATAAATGATGAGGTGA 59.403 40.000 0.00 0.00 0.00 4.02
85 86 6.097696 TCACGTAGGATAAATGATGAGGTGAA 59.902 38.462 0.00 0.00 30.04 3.18
86 87 6.761242 CACGTAGGATAAATGATGAGGTGAAA 59.239 38.462 0.00 0.00 0.00 2.69
87 88 6.986817 ACGTAGGATAAATGATGAGGTGAAAG 59.013 38.462 0.00 0.00 0.00 2.62
88 89 7.147724 ACGTAGGATAAATGATGAGGTGAAAGA 60.148 37.037 0.00 0.00 0.00 2.52
89 90 7.383572 CGTAGGATAAATGATGAGGTGAAAGAG 59.616 40.741 0.00 0.00 0.00 2.85
90 91 7.443302 AGGATAAATGATGAGGTGAAAGAGA 57.557 36.000 0.00 0.00 0.00 3.10
91 92 7.507829 AGGATAAATGATGAGGTGAAAGAGAG 58.492 38.462 0.00 0.00 0.00 3.20
92 93 7.346698 AGGATAAATGATGAGGTGAAAGAGAGA 59.653 37.037 0.00 0.00 0.00 3.10
93 94 7.656948 GGATAAATGATGAGGTGAAAGAGAGAG 59.343 40.741 0.00 0.00 0.00 3.20
94 95 6.617782 AAATGATGAGGTGAAAGAGAGAGA 57.382 37.500 0.00 0.00 0.00 3.10
95 96 6.617782 AATGATGAGGTGAAAGAGAGAGAA 57.382 37.500 0.00 0.00 0.00 2.87
96 97 5.398603 TGATGAGGTGAAAGAGAGAGAAC 57.601 43.478 0.00 0.00 0.00 3.01
97 98 5.083122 TGATGAGGTGAAAGAGAGAGAACT 58.917 41.667 0.00 0.00 0.00 3.01
98 99 5.184864 TGATGAGGTGAAAGAGAGAGAACTC 59.815 44.000 0.00 0.00 42.90 3.01
99 100 4.474394 TGAGGTGAAAGAGAGAGAACTCA 58.526 43.478 4.64 0.00 44.79 3.41
100 101 5.083122 TGAGGTGAAAGAGAGAGAACTCAT 58.917 41.667 4.64 0.00 44.79 2.90
101 102 6.249192 TGAGGTGAAAGAGAGAGAACTCATA 58.751 40.000 4.64 0.00 44.79 2.15
102 103 6.721668 TGAGGTGAAAGAGAGAGAACTCATAA 59.278 38.462 4.64 0.00 44.79 1.90
103 104 7.093988 TGAGGTGAAAGAGAGAGAACTCATAAG 60.094 40.741 4.64 0.00 44.79 1.73
104 105 6.951198 AGGTGAAAGAGAGAGAACTCATAAGA 59.049 38.462 4.64 0.00 44.79 2.10
105 106 7.453126 AGGTGAAAGAGAGAGAACTCATAAGAA 59.547 37.037 4.64 0.00 44.79 2.52
106 107 8.091449 GGTGAAAGAGAGAGAACTCATAAGAAA 58.909 37.037 4.64 0.00 44.79 2.52
107 108 9.482627 GTGAAAGAGAGAGAACTCATAAGAAAA 57.517 33.333 4.64 0.00 44.79 2.29
108 109 9.703892 TGAAAGAGAGAGAACTCATAAGAAAAG 57.296 33.333 4.64 0.00 44.79 2.27
109 110 9.150348 GAAAGAGAGAGAACTCATAAGAAAAGG 57.850 37.037 4.64 0.00 44.79 3.11
110 111 6.639563 AGAGAGAGAACTCATAAGAAAAGGC 58.360 40.000 4.64 0.00 44.79 4.35
111 112 6.440328 AGAGAGAGAACTCATAAGAAAAGGCT 59.560 38.462 4.64 0.00 44.79 4.58
112 113 7.014988 AGAGAGAACTCATAAGAAAAGGCTT 57.985 36.000 0.00 0.00 44.79 4.35
113 114 6.878389 AGAGAGAACTCATAAGAAAAGGCTTG 59.122 38.462 0.00 0.00 44.79 4.01
114 115 6.538263 AGAGAACTCATAAGAAAAGGCTTGT 58.462 36.000 0.00 0.00 0.00 3.16
115 116 6.652900 AGAGAACTCATAAGAAAAGGCTTGTC 59.347 38.462 9.51 9.51 0.00 3.18
116 117 6.538263 AGAACTCATAAGAAAAGGCTTGTCT 58.462 36.000 14.33 14.33 0.00 3.41
117 118 7.001073 AGAACTCATAAGAAAAGGCTTGTCTT 58.999 34.615 30.04 30.04 35.77 3.01
118 119 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
119 120 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
120 121 6.652900 ACTCATAAGAAAAGGCTTGTCTTCTC 59.347 38.462 30.86 8.39 33.70 2.87
121 122 6.773638 TCATAAGAAAAGGCTTGTCTTCTCT 58.226 36.000 30.86 16.87 33.70 3.10
122 123 7.227156 TCATAAGAAAAGGCTTGTCTTCTCTT 58.773 34.615 30.86 18.21 37.66 2.85
123 124 8.375506 TCATAAGAAAAGGCTTGTCTTCTCTTA 58.624 33.333 30.86 16.85 39.30 2.10
124 125 9.171877 CATAAGAAAAGGCTTGTCTTCTCTTAT 57.828 33.333 30.86 18.17 42.82 1.73
125 126 9.746457 ATAAGAAAAGGCTTGTCTTCTCTTATT 57.254 29.630 30.86 11.70 40.94 1.40
126 127 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
127 128 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
128 129 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
129 130 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
130 131 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
131 132 9.746457 AAAGGCTTGTCTTCTCTTATTTAAGAT 57.254 29.630 0.00 0.00 41.12 2.40
165 166 9.709495 GAGATGATCTCTTAGCACAATTTATCT 57.291 33.333 14.98 0.00 40.30 1.98
166 167 9.709495 AGATGATCTCTTAGCACAATTTATCTC 57.291 33.333 0.00 0.00 0.00 2.75
167 168 9.486497 GATGATCTCTTAGCACAATTTATCTCA 57.514 33.333 0.00 0.00 0.00 3.27
168 169 8.654230 TGATCTCTTAGCACAATTTATCTCAC 57.346 34.615 0.00 0.00 0.00 3.51
169 170 7.712639 TGATCTCTTAGCACAATTTATCTCACC 59.287 37.037 0.00 0.00 0.00 4.02
170 171 6.946340 TCTCTTAGCACAATTTATCTCACCA 58.054 36.000 0.00 0.00 0.00 4.17
171 172 7.568349 TCTCTTAGCACAATTTATCTCACCAT 58.432 34.615 0.00 0.00 0.00 3.55
172 173 7.496920 TCTCTTAGCACAATTTATCTCACCATG 59.503 37.037 0.00 0.00 0.00 3.66
173 174 7.112122 TCTTAGCACAATTTATCTCACCATGT 58.888 34.615 0.00 0.00 0.00 3.21
174 175 7.611467 TCTTAGCACAATTTATCTCACCATGTT 59.389 33.333 0.00 0.00 0.00 2.71
175 176 6.594788 AGCACAATTTATCTCACCATGTTT 57.405 33.333 0.00 0.00 0.00 2.83
176 177 6.996509 AGCACAATTTATCTCACCATGTTTT 58.003 32.000 0.00 0.00 0.00 2.43
177 178 8.121305 AGCACAATTTATCTCACCATGTTTTA 57.879 30.769 0.00 0.00 0.00 1.52
178 179 8.584157 AGCACAATTTATCTCACCATGTTTTAA 58.416 29.630 0.00 0.00 0.00 1.52
179 180 8.863049 GCACAATTTATCTCACCATGTTTTAAG 58.137 33.333 0.00 0.00 0.00 1.85
180 181 9.357652 CACAATTTATCTCACCATGTTTTAAGG 57.642 33.333 0.00 0.00 0.00 2.69
181 182 9.308000 ACAATTTATCTCACCATGTTTTAAGGA 57.692 29.630 0.00 0.00 0.00 3.36
186 187 6.024552 TCTCACCATGTTTTAAGGAATTGC 57.975 37.500 0.00 0.00 0.00 3.56
187 188 5.774690 TCTCACCATGTTTTAAGGAATTGCT 59.225 36.000 0.00 0.00 0.00 3.91
188 189 6.945435 TCTCACCATGTTTTAAGGAATTGCTA 59.055 34.615 0.00 0.00 0.00 3.49
189 190 7.121168 TCTCACCATGTTTTAAGGAATTGCTAG 59.879 37.037 0.00 0.00 0.00 3.42
190 191 6.719370 TCACCATGTTTTAAGGAATTGCTAGT 59.281 34.615 0.00 0.00 0.00 2.57
191 192 7.232534 TCACCATGTTTTAAGGAATTGCTAGTT 59.767 33.333 0.00 0.00 0.00 2.24
192 193 8.519526 CACCATGTTTTAAGGAATTGCTAGTTA 58.480 33.333 0.00 0.00 0.00 2.24
193 194 9.255029 ACCATGTTTTAAGGAATTGCTAGTTAT 57.745 29.630 0.00 0.00 0.00 1.89
204 205 9.566432 AGGAATTGCTAGTTATTGAAGATAAGG 57.434 33.333 0.00 0.00 0.00 2.69
205 206 8.293157 GGAATTGCTAGTTATTGAAGATAAGGC 58.707 37.037 0.00 0.00 0.00 4.35
206 207 8.986929 AATTGCTAGTTATTGAAGATAAGGCT 57.013 30.769 0.00 0.00 0.00 4.58
209 210 9.547753 TTGCTAGTTATTGAAGATAAGGCTAAG 57.452 33.333 0.00 0.00 0.00 2.18
210 211 8.924303 TGCTAGTTATTGAAGATAAGGCTAAGA 58.076 33.333 0.00 0.00 0.00 2.10
211 212 9.936759 GCTAGTTATTGAAGATAAGGCTAAGAT 57.063 33.333 0.00 0.00 0.00 2.40
261 262 9.624697 TTGTCATCTTTAAATTACATGCAAGAC 57.375 29.630 0.00 0.00 0.00 3.01
262 263 9.013229 TGTCATCTTTAAATTACATGCAAGACT 57.987 29.630 0.00 0.00 0.00 3.24
263 264 9.846248 GTCATCTTTAAATTACATGCAAGACTT 57.154 29.630 0.00 0.00 0.00 3.01
277 278 9.846248 ACATGCAAGACTTAAGATAAAATTGTC 57.154 29.630 10.09 0.00 0.00 3.18
296 297 9.859427 AAATTGTCTTATCAACCATTGTACATG 57.141 29.630 0.00 0.00 0.00 3.21
297 298 6.435430 TGTCTTATCAACCATTGTACATGC 57.565 37.500 0.00 0.00 0.00 4.06
298 299 5.356751 TGTCTTATCAACCATTGTACATGCC 59.643 40.000 0.00 0.00 0.00 4.40
299 300 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
300 301 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
301 302 2.722094 TCAACCATTGTACATGCCCTC 58.278 47.619 0.00 0.00 0.00 4.30
302 303 2.040947 TCAACCATTGTACATGCCCTCA 59.959 45.455 0.00 0.00 0.00 3.86
303 304 2.424601 CAACCATTGTACATGCCCTCAG 59.575 50.000 0.00 0.00 0.00 3.35
304 305 1.635487 ACCATTGTACATGCCCTCAGT 59.365 47.619 0.00 0.00 0.00 3.41
305 306 2.292267 CCATTGTACATGCCCTCAGTC 58.708 52.381 0.00 0.00 0.00 3.51
306 307 2.356022 CCATTGTACATGCCCTCAGTCA 60.356 50.000 0.00 0.00 0.00 3.41
307 308 2.768253 TTGTACATGCCCTCAGTCAG 57.232 50.000 0.00 0.00 0.00 3.51
308 309 0.250234 TGTACATGCCCTCAGTCAGC 59.750 55.000 0.00 0.00 0.00 4.26
309 310 0.462759 GTACATGCCCTCAGTCAGCC 60.463 60.000 0.00 0.00 0.00 4.85
310 311 0.909133 TACATGCCCTCAGTCAGCCA 60.909 55.000 0.00 0.00 0.00 4.75
311 312 1.748122 CATGCCCTCAGTCAGCCAC 60.748 63.158 0.00 0.00 0.00 5.01
312 313 3.320879 ATGCCCTCAGTCAGCCACG 62.321 63.158 0.00 0.00 0.00 4.94
325 326 3.414700 CCACGCGCAGGAGTGAAC 61.415 66.667 12.47 0.00 45.54 3.18
326 327 3.414700 CACGCGCAGGAGTGAACC 61.415 66.667 5.73 0.00 45.54 3.62
327 328 4.681978 ACGCGCAGGAGTGAACCC 62.682 66.667 5.73 0.00 0.00 4.11
328 329 4.680237 CGCGCAGGAGTGAACCCA 62.680 66.667 8.75 0.00 0.00 4.51
329 330 3.050275 GCGCAGGAGTGAACCCAC 61.050 66.667 0.30 0.00 43.50 4.61
330 331 2.425592 CGCAGGAGTGAACCCACA 59.574 61.111 0.00 0.00 45.54 4.17
331 332 1.961277 CGCAGGAGTGAACCCACAC 60.961 63.158 0.00 0.00 45.54 3.82
332 333 1.148273 GCAGGAGTGAACCCACACA 59.852 57.895 0.00 0.00 45.54 3.72
333 334 1.166531 GCAGGAGTGAACCCACACAC 61.167 60.000 0.00 0.00 45.54 3.82
335 336 1.134098 CAGGAGTGAACCCACACACTT 60.134 52.381 0.00 0.00 45.54 3.16
336 337 1.564348 AGGAGTGAACCCACACACTTT 59.436 47.619 0.00 0.00 45.54 2.66
337 338 2.025321 AGGAGTGAACCCACACACTTTT 60.025 45.455 0.00 0.00 45.54 2.27
338 339 2.758423 GGAGTGAACCCACACACTTTTT 59.242 45.455 0.00 0.00 45.54 1.94
382 383 9.606631 TTTTTGTTTTGCATTATTGTTAGAGGT 57.393 25.926 0.00 0.00 0.00 3.85
389 390 9.679661 TTTGCATTATTGTTAGAGGTATTCTGA 57.320 29.630 0.00 0.00 36.61 3.27
390 391 9.679661 TTGCATTATTGTTAGAGGTATTCTGAA 57.320 29.630 0.00 0.00 36.61 3.02
391 392 9.679661 TGCATTATTGTTAGAGGTATTCTGAAA 57.320 29.630 0.00 0.00 36.61 2.69
449 450 8.829514 TTTTGTAAGAAACGTTTGACTGTATG 57.170 30.769 20.10 0.00 0.00 2.39
450 451 5.981174 TGTAAGAAACGTTTGACTGTATGC 58.019 37.500 20.10 0.00 0.00 3.14
451 452 5.524281 TGTAAGAAACGTTTGACTGTATGCA 59.476 36.000 20.10 2.79 0.00 3.96
452 453 5.689383 AAGAAACGTTTGACTGTATGCAT 57.311 34.783 20.10 3.79 0.00 3.96
453 454 5.689383 AGAAACGTTTGACTGTATGCATT 57.311 34.783 20.10 0.00 0.00 3.56
454 455 6.072112 AGAAACGTTTGACTGTATGCATTT 57.928 33.333 20.10 0.00 0.00 2.32
455 456 7.197071 AGAAACGTTTGACTGTATGCATTTA 57.803 32.000 20.10 0.00 0.00 1.40
456 457 7.644490 AGAAACGTTTGACTGTATGCATTTAA 58.356 30.769 20.10 0.00 0.00 1.52
457 458 8.132362 AGAAACGTTTGACTGTATGCATTTAAA 58.868 29.630 20.10 0.00 0.00 1.52
458 459 8.635877 AAACGTTTGACTGTATGCATTTAAAA 57.364 26.923 13.81 0.00 0.00 1.52
459 460 8.635877 AACGTTTGACTGTATGCATTTAAAAA 57.364 26.923 3.54 0.00 0.00 1.94
460 461 8.810652 ACGTTTGACTGTATGCATTTAAAAAT 57.189 26.923 3.54 0.00 0.00 1.82
461 462 9.900710 ACGTTTGACTGTATGCATTTAAAAATA 57.099 25.926 3.54 0.00 0.00 1.40
486 487 8.122472 ACTAGGTAATTCAAAAAGTGATTGGG 57.878 34.615 0.00 0.00 35.70 4.12
487 488 6.994421 AGGTAATTCAAAAAGTGATTGGGT 57.006 33.333 0.00 0.00 35.70 4.51
488 489 9.238368 CTAGGTAATTCAAAAAGTGATTGGGTA 57.762 33.333 0.00 0.00 35.70 3.69
489 490 8.664669 AGGTAATTCAAAAAGTGATTGGGTAT 57.335 30.769 0.00 0.00 35.70 2.73
490 491 9.100197 AGGTAATTCAAAAAGTGATTGGGTATT 57.900 29.630 0.00 0.00 35.70 1.89
491 492 9.719355 GGTAATTCAAAAAGTGATTGGGTATTT 57.281 29.630 0.00 0.00 35.70 1.40
501 502 8.546597 AAGTGATTGGGTATTTAACAAAATGC 57.453 30.769 0.00 0.00 0.00 3.56
502 503 7.906327 AGTGATTGGGTATTTAACAAAATGCT 58.094 30.769 0.00 0.00 0.00 3.79
503 504 8.374743 AGTGATTGGGTATTTAACAAAATGCTT 58.625 29.630 0.00 0.00 0.00 3.91
504 505 8.442384 GTGATTGGGTATTTAACAAAATGCTTG 58.558 33.333 0.00 0.00 0.00 4.01
505 506 8.153550 TGATTGGGTATTTAACAAAATGCTTGT 58.846 29.630 0.00 0.00 0.00 3.16
506 507 7.721286 TTGGGTATTTAACAAAATGCTTGTG 57.279 32.000 0.00 0.00 32.22 3.33
507 508 6.226787 TGGGTATTTAACAAAATGCTTGTGG 58.773 36.000 0.00 0.00 32.22 4.17
508 509 6.183361 TGGGTATTTAACAAAATGCTTGTGGT 60.183 34.615 0.00 0.00 32.22 4.16
509 510 7.015292 TGGGTATTTAACAAAATGCTTGTGGTA 59.985 33.333 0.00 0.00 32.22 3.25
510 511 8.038351 GGGTATTTAACAAAATGCTTGTGGTAT 58.962 33.333 0.00 0.00 32.22 2.73
511 512 9.083080 GGTATTTAACAAAATGCTTGTGGTATC 57.917 33.333 0.00 0.00 32.22 2.24
512 513 9.855021 GTATTTAACAAAATGCTTGTGGTATCT 57.145 29.630 0.00 0.00 32.22 1.98
562 563 8.920665 TGTTTGTGATTTTTATTTCTAATGCCG 58.079 29.630 0.00 0.00 0.00 5.69
563 564 7.518731 TTGTGATTTTTATTTCTAATGCCGC 57.481 32.000 0.00 0.00 0.00 6.53
564 565 6.625362 TGTGATTTTTATTTCTAATGCCGCA 58.375 32.000 0.00 0.00 0.00 5.69
565 566 7.093354 TGTGATTTTTATTTCTAATGCCGCAA 58.907 30.769 0.00 0.00 0.00 4.85
566 567 7.600375 TGTGATTTTTATTTCTAATGCCGCAAA 59.400 29.630 0.00 0.00 0.00 3.68
567 568 8.603181 GTGATTTTTATTTCTAATGCCGCAAAT 58.397 29.630 0.00 0.00 0.00 2.32
568 569 8.816144 TGATTTTTATTTCTAATGCCGCAAATC 58.184 29.630 0.00 0.00 0.00 2.17
569 570 8.947055 ATTTTTATTTCTAATGCCGCAAATCT 57.053 26.923 0.00 0.00 0.00 2.40
571 572 9.862371 TTTTTATTTCTAATGCCGCAAATCTAA 57.138 25.926 0.00 0.00 0.00 2.10
576 577 9.846248 ATTTCTAATGCCGCAAATCTAATTATC 57.154 29.630 0.00 0.00 0.00 1.75
577 578 7.060600 TCTAATGCCGCAAATCTAATTATCG 57.939 36.000 0.00 0.00 0.00 2.92
578 579 5.940192 AATGCCGCAAATCTAATTATCGA 57.060 34.783 0.00 0.00 0.00 3.59
579 580 4.990543 TGCCGCAAATCTAATTATCGAG 57.009 40.909 0.00 0.00 0.00 4.04
580 581 4.377021 TGCCGCAAATCTAATTATCGAGT 58.623 39.130 0.00 0.00 0.00 4.18
581 582 5.534407 TGCCGCAAATCTAATTATCGAGTA 58.466 37.500 0.00 0.00 0.00 2.59
582 583 5.404366 TGCCGCAAATCTAATTATCGAGTAC 59.596 40.000 0.00 0.00 0.00 2.73
583 584 5.163982 GCCGCAAATCTAATTATCGAGTACC 60.164 44.000 0.00 0.00 0.00 3.34
584 585 5.924254 CCGCAAATCTAATTATCGAGTACCA 59.076 40.000 0.00 0.00 0.00 3.25
585 586 6.590292 CCGCAAATCTAATTATCGAGTACCAT 59.410 38.462 0.00 0.00 0.00 3.55
586 587 7.758076 CCGCAAATCTAATTATCGAGTACCATA 59.242 37.037 0.00 0.00 0.00 2.74
587 588 8.584600 CGCAAATCTAATTATCGAGTACCATAC 58.415 37.037 0.00 0.00 0.00 2.39
588 589 9.640963 GCAAATCTAATTATCGAGTACCATACT 57.359 33.333 0.00 0.00 42.86 2.12
590 591 9.640963 AAATCTAATTATCGAGTACCATACTGC 57.359 33.333 0.00 0.00 39.59 4.40
591 592 7.997773 TCTAATTATCGAGTACCATACTGCT 57.002 36.000 0.00 0.00 39.59 4.24
592 593 9.682465 ATCTAATTATCGAGTACCATACTGCTA 57.318 33.333 0.00 0.00 39.59 3.49
606 607 3.204827 GCTACGCACCTGCCATGG 61.205 66.667 7.63 7.63 37.91 3.66
1050 2543 2.094390 GCTGCAGAAATTGATCCAAGCA 60.094 45.455 20.43 0.00 0.00 3.91
1174 2667 1.652012 GCTCTCTCCGATCTCACCG 59.348 63.158 0.00 0.00 0.00 4.94
1331 2824 3.424105 GGGGCAGCCTCCTTCCAT 61.424 66.667 12.43 0.00 0.00 3.41
1440 2933 1.409427 GAGATTCGAACCTCCGGACAT 59.591 52.381 8.48 0.00 0.00 3.06
2323 4214 7.429374 ACCTCTCTTGATATTTCTGATGACA 57.571 36.000 0.00 0.00 0.00 3.58
2413 4304 2.043752 TCCATGCAGCATGTGGGG 60.044 61.111 29.57 17.17 39.94 4.96
2435 4326 5.479306 GGCACAGTGTAAGAAGAGTATTCA 58.521 41.667 1.61 0.00 0.00 2.57
2750 4641 6.659242 TGGGTAGATTGGAAAAAGAAGACATC 59.341 38.462 0.00 0.00 0.00 3.06
2752 4643 7.340487 GGGTAGATTGGAAAAAGAAGACATCAT 59.660 37.037 0.00 0.00 0.00 2.45
2892 4783 6.597280 TGCATATGTTAGAATTGTGTGCTGTA 59.403 34.615 4.29 0.00 0.00 2.74
3006 4897 2.426023 GTGTTGCCTCCTCACCGT 59.574 61.111 0.00 0.00 0.00 4.83
3186 5077 3.127895 CGGTGTTGTTGGTGAAGAAGAAA 59.872 43.478 0.00 0.00 0.00 2.52
3276 5167 0.179092 TGCCAGTGATCGATGAGCTG 60.179 55.000 0.54 8.00 0.00 4.24
3521 5589 2.234908 CTGACCCTTCGAAGATCCAAGT 59.765 50.000 26.61 12.60 35.04 3.16
3834 5902 2.025887 AGGGCATCCGATCAGTTTTCTT 60.026 45.455 0.00 0.00 38.33 2.52
3837 5905 4.442706 GGCATCCGATCAGTTTTCTTAGA 58.557 43.478 0.00 0.00 0.00 2.10
4003 7211 6.340962 TGTCTGAGCAAAAGCTTACTACTA 57.659 37.500 0.00 0.00 0.00 1.82
4131 7339 7.430441 CAATTCCTGAATCATGTCATGCAATA 58.570 34.615 8.03 0.00 0.00 1.90
4303 7511 1.103803 CTGGCTCGGCTCTAACACTA 58.896 55.000 0.00 0.00 0.00 2.74
4743 7951 9.716556 ATATCTGATCGGGATAAGGTATTTACT 57.283 33.333 0.62 0.00 23.49 2.24
4877 8085 2.325761 CTTTCTCAGGTGTACGGTTCG 58.674 52.381 0.00 0.00 0.00 3.95
5538 8749 3.652869 TGAACTCCTGGGAAGACAAGAAT 59.347 43.478 0.00 0.00 0.00 2.40
5622 8833 3.204827 GCTACGCACCTGCCATGG 61.205 66.667 7.63 7.63 37.91 3.66
5819 9338 5.244189 TCCTATCCGCTACTCTGTATCTT 57.756 43.478 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.937231 GATTAGGAGAGAGCGCACGC 60.937 60.000 11.47 6.99 42.33 5.34
1 2 0.382158 TGATTAGGAGAGAGCGCACG 59.618 55.000 11.47 0.00 0.00 5.34
3 4 1.769026 AGTGATTAGGAGAGAGCGCA 58.231 50.000 11.47 0.00 0.00 6.09
4 5 2.880963 AAGTGATTAGGAGAGAGCGC 57.119 50.000 0.00 0.00 0.00 5.92
5 6 6.078202 TGATTAAGTGATTAGGAGAGAGCG 57.922 41.667 0.00 0.00 0.00 5.03
6 7 6.454795 CCTGATTAAGTGATTAGGAGAGAGC 58.545 44.000 0.00 0.00 35.40 4.09
7 8 6.518200 GCCCTGATTAAGTGATTAGGAGAGAG 60.518 46.154 0.00 0.00 35.40 3.20
8 9 5.305644 GCCCTGATTAAGTGATTAGGAGAGA 59.694 44.000 0.00 0.00 35.40 3.10
9 10 5.070981 TGCCCTGATTAAGTGATTAGGAGAG 59.929 44.000 0.00 0.00 35.40 3.20
10 11 4.968719 TGCCCTGATTAAGTGATTAGGAGA 59.031 41.667 0.00 0.00 35.40 3.71
11 12 5.296151 TGCCCTGATTAAGTGATTAGGAG 57.704 43.478 0.00 0.00 35.40 3.69
12 13 5.132648 ACATGCCCTGATTAAGTGATTAGGA 59.867 40.000 0.00 0.00 35.40 2.94
13 14 5.380043 ACATGCCCTGATTAAGTGATTAGG 58.620 41.667 0.00 0.00 33.71 2.69
14 15 6.992123 TGTACATGCCCTGATTAAGTGATTAG 59.008 38.462 0.00 0.00 0.00 1.73
15 16 6.894682 TGTACATGCCCTGATTAAGTGATTA 58.105 36.000 0.00 0.00 0.00 1.75
16 17 5.754782 TGTACATGCCCTGATTAAGTGATT 58.245 37.500 0.00 0.00 0.00 2.57
17 18 5.372343 TGTACATGCCCTGATTAAGTGAT 57.628 39.130 0.00 0.00 0.00 3.06
18 19 4.835284 TGTACATGCCCTGATTAAGTGA 57.165 40.909 0.00 0.00 0.00 3.41
19 20 5.589855 TCATTGTACATGCCCTGATTAAGTG 59.410 40.000 0.00 0.00 0.00 3.16
20 21 5.754782 TCATTGTACATGCCCTGATTAAGT 58.245 37.500 0.00 0.00 0.00 2.24
21 22 6.675026 CATCATTGTACATGCCCTGATTAAG 58.325 40.000 0.00 0.00 0.00 1.85
22 23 5.009911 GCATCATTGTACATGCCCTGATTAA 59.990 40.000 7.77 0.00 39.70 1.40
23 24 4.520111 GCATCATTGTACATGCCCTGATTA 59.480 41.667 7.77 0.00 39.70 1.75
24 25 3.319972 GCATCATTGTACATGCCCTGATT 59.680 43.478 7.77 0.00 39.70 2.57
25 26 2.889045 GCATCATTGTACATGCCCTGAT 59.111 45.455 7.77 4.36 39.70 2.90
26 27 2.092267 AGCATCATTGTACATGCCCTGA 60.092 45.455 14.08 5.57 45.63 3.86
27 28 2.304092 AGCATCATTGTACATGCCCTG 58.696 47.619 14.08 2.88 45.63 4.45
28 29 2.742428 AGCATCATTGTACATGCCCT 57.258 45.000 14.08 0.00 45.63 5.19
29 30 5.458041 AAATAGCATCATTGTACATGCCC 57.542 39.130 14.08 0.00 45.63 5.36
30 31 7.040478 TCCTAAAATAGCATCATTGTACATGCC 60.040 37.037 14.08 0.00 45.63 4.40
31 32 7.874940 TCCTAAAATAGCATCATTGTACATGC 58.125 34.615 10.53 10.53 44.96 4.06
32 33 9.060347 ACTCCTAAAATAGCATCATTGTACATG 57.940 33.333 0.00 0.00 0.00 3.21
33 34 9.060347 CACTCCTAAAATAGCATCATTGTACAT 57.940 33.333 0.00 0.00 0.00 2.29
34 35 8.046708 ACACTCCTAAAATAGCATCATTGTACA 58.953 33.333 0.00 0.00 0.00 2.90
35 36 8.438676 ACACTCCTAAAATAGCATCATTGTAC 57.561 34.615 0.00 0.00 0.00 2.90
36 37 8.264347 TGACACTCCTAAAATAGCATCATTGTA 58.736 33.333 0.00 0.00 0.00 2.41
37 38 7.066284 GTGACACTCCTAAAATAGCATCATTGT 59.934 37.037 0.00 0.00 0.00 2.71
38 39 7.412853 GTGACACTCCTAAAATAGCATCATTG 58.587 38.462 0.00 0.00 0.00 2.82
39 40 6.258727 CGTGACACTCCTAAAATAGCATCATT 59.741 38.462 3.68 0.00 0.00 2.57
40 41 5.755375 CGTGACACTCCTAAAATAGCATCAT 59.245 40.000 3.68 0.00 0.00 2.45
41 42 5.109210 CGTGACACTCCTAAAATAGCATCA 58.891 41.667 3.68 0.00 0.00 3.07
42 43 5.109903 ACGTGACACTCCTAAAATAGCATC 58.890 41.667 3.68 0.00 0.00 3.91
43 44 5.086104 ACGTGACACTCCTAAAATAGCAT 57.914 39.130 3.68 0.00 0.00 3.79
44 45 4.530710 ACGTGACACTCCTAAAATAGCA 57.469 40.909 3.68 0.00 0.00 3.49
45 46 5.041940 CCTACGTGACACTCCTAAAATAGC 58.958 45.833 0.00 0.00 0.00 2.97
46 47 6.446781 TCCTACGTGACACTCCTAAAATAG 57.553 41.667 0.00 0.00 0.00 1.73
47 48 8.523915 TTATCCTACGTGACACTCCTAAAATA 57.476 34.615 0.00 0.00 0.00 1.40
48 49 5.934402 ATCCTACGTGACACTCCTAAAAT 57.066 39.130 0.00 0.00 0.00 1.82
49 50 6.839124 TTATCCTACGTGACACTCCTAAAA 57.161 37.500 0.00 0.00 0.00 1.52
50 51 6.839124 TTTATCCTACGTGACACTCCTAAA 57.161 37.500 0.00 0.00 0.00 1.85
51 52 6.604396 TCATTTATCCTACGTGACACTCCTAA 59.396 38.462 0.00 0.00 0.00 2.69
52 53 6.124340 TCATTTATCCTACGTGACACTCCTA 58.876 40.000 0.00 0.00 0.00 2.94
53 54 4.954202 TCATTTATCCTACGTGACACTCCT 59.046 41.667 0.00 0.00 0.00 3.69
54 55 5.258456 TCATTTATCCTACGTGACACTCC 57.742 43.478 0.00 0.00 0.00 3.85
55 56 6.504398 TCATCATTTATCCTACGTGACACTC 58.496 40.000 0.00 0.00 0.00 3.51
56 57 6.461648 CCTCATCATTTATCCTACGTGACACT 60.462 42.308 0.00 0.00 0.00 3.55
57 58 5.692204 CCTCATCATTTATCCTACGTGACAC 59.308 44.000 0.00 0.00 0.00 3.67
58 59 5.362717 ACCTCATCATTTATCCTACGTGACA 59.637 40.000 0.00 0.00 0.00 3.58
59 60 5.692204 CACCTCATCATTTATCCTACGTGAC 59.308 44.000 0.00 0.00 0.00 3.67
60 61 5.596772 TCACCTCATCATTTATCCTACGTGA 59.403 40.000 0.00 0.00 0.00 4.35
61 62 5.842907 TCACCTCATCATTTATCCTACGTG 58.157 41.667 0.00 0.00 0.00 4.49
62 63 6.479972 TTCACCTCATCATTTATCCTACGT 57.520 37.500 0.00 0.00 0.00 3.57
63 64 7.210174 TCTTTCACCTCATCATTTATCCTACG 58.790 38.462 0.00 0.00 0.00 3.51
64 65 8.424918 TCTCTTTCACCTCATCATTTATCCTAC 58.575 37.037 0.00 0.00 0.00 3.18
65 66 8.553085 TCTCTTTCACCTCATCATTTATCCTA 57.447 34.615 0.00 0.00 0.00 2.94
66 67 7.346698 TCTCTCTTTCACCTCATCATTTATCCT 59.653 37.037 0.00 0.00 0.00 3.24
67 68 7.504403 TCTCTCTTTCACCTCATCATTTATCC 58.496 38.462 0.00 0.00 0.00 2.59
68 69 8.420222 TCTCTCTCTTTCACCTCATCATTTATC 58.580 37.037 0.00 0.00 0.00 1.75
69 70 8.316497 TCTCTCTCTTTCACCTCATCATTTAT 57.684 34.615 0.00 0.00 0.00 1.40
70 71 7.724490 TCTCTCTCTTTCACCTCATCATTTA 57.276 36.000 0.00 0.00 0.00 1.40
71 72 6.617782 TCTCTCTCTTTCACCTCATCATTT 57.382 37.500 0.00 0.00 0.00 2.32
72 73 6.213195 AGTTCTCTCTCTTTCACCTCATCATT 59.787 38.462 0.00 0.00 0.00 2.57
73 74 5.721000 AGTTCTCTCTCTTTCACCTCATCAT 59.279 40.000 0.00 0.00 0.00 2.45
74 75 5.083122 AGTTCTCTCTCTTTCACCTCATCA 58.917 41.667 0.00 0.00 0.00 3.07
75 76 5.184864 TGAGTTCTCTCTCTTTCACCTCATC 59.815 44.000 1.53 0.00 40.98 2.92
76 77 5.083122 TGAGTTCTCTCTCTTTCACCTCAT 58.917 41.667 1.53 0.00 40.98 2.90
77 78 4.474394 TGAGTTCTCTCTCTTTCACCTCA 58.526 43.478 1.53 0.00 40.98 3.86
78 79 5.659440 ATGAGTTCTCTCTCTTTCACCTC 57.341 43.478 1.53 0.00 40.98 3.85
79 80 6.951198 TCTTATGAGTTCTCTCTCTTTCACCT 59.049 38.462 1.53 0.00 40.98 4.00
80 81 7.164230 TCTTATGAGTTCTCTCTCTTTCACC 57.836 40.000 1.53 0.00 40.98 4.02
81 82 9.482627 TTTTCTTATGAGTTCTCTCTCTTTCAC 57.517 33.333 1.53 0.00 40.98 3.18
82 83 9.703892 CTTTTCTTATGAGTTCTCTCTCTTTCA 57.296 33.333 1.53 0.00 40.98 2.69
83 84 9.150348 CCTTTTCTTATGAGTTCTCTCTCTTTC 57.850 37.037 1.53 0.00 40.98 2.62
84 85 7.606073 GCCTTTTCTTATGAGTTCTCTCTCTTT 59.394 37.037 1.53 0.00 40.98 2.52
85 86 7.038373 AGCCTTTTCTTATGAGTTCTCTCTCTT 60.038 37.037 1.53 0.00 40.98 2.85
86 87 6.440328 AGCCTTTTCTTATGAGTTCTCTCTCT 59.560 38.462 1.53 0.00 40.98 3.10
87 88 6.639563 AGCCTTTTCTTATGAGTTCTCTCTC 58.360 40.000 1.53 0.00 40.98 3.20
88 89 6.619329 AGCCTTTTCTTATGAGTTCTCTCT 57.381 37.500 1.53 0.00 40.98 3.10
89 90 6.652900 ACAAGCCTTTTCTTATGAGTTCTCTC 59.347 38.462 1.53 0.00 40.79 3.20
90 91 6.538263 ACAAGCCTTTTCTTATGAGTTCTCT 58.462 36.000 1.53 0.00 0.00 3.10
91 92 6.652900 AGACAAGCCTTTTCTTATGAGTTCTC 59.347 38.462 0.00 0.00 0.00 2.87
92 93 6.538263 AGACAAGCCTTTTCTTATGAGTTCT 58.462 36.000 0.00 0.00 0.00 3.01
93 94 6.809630 AGACAAGCCTTTTCTTATGAGTTC 57.190 37.500 0.00 0.00 0.00 3.01
94 95 7.001073 AGAAGACAAGCCTTTTCTTATGAGTT 58.999 34.615 5.86 0.00 29.54 3.01
95 96 6.538263 AGAAGACAAGCCTTTTCTTATGAGT 58.462 36.000 5.86 0.00 29.54 3.41
96 97 6.878389 AGAGAAGACAAGCCTTTTCTTATGAG 59.122 38.462 5.29 0.00 35.01 2.90
97 98 6.773638 AGAGAAGACAAGCCTTTTCTTATGA 58.226 36.000 5.29 0.00 35.01 2.15
98 99 7.446001 AAGAGAAGACAAGCCTTTTCTTATG 57.554 36.000 5.29 0.00 42.29 1.90
100 101 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
101 102 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
102 103 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
103 104 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
104 105 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
105 106 9.746457 ATCTTAAATAAGAGAAGACAAGCCTTT 57.254 29.630 8.68 0.00 44.67 3.11
139 140 9.709495 AGATAAATTGTGCTAAGAGATCATCTC 57.291 33.333 6.55 6.55 43.70 2.75
140 141 9.709495 GAGATAAATTGTGCTAAGAGATCATCT 57.291 33.333 0.00 0.00 41.27 2.90
141 142 9.486497 TGAGATAAATTGTGCTAAGAGATCATC 57.514 33.333 0.00 0.00 0.00 2.92
142 143 9.270640 GTGAGATAAATTGTGCTAAGAGATCAT 57.729 33.333 0.00 0.00 0.00 2.45
143 144 7.712639 GGTGAGATAAATTGTGCTAAGAGATCA 59.287 37.037 0.00 0.00 0.00 2.92
144 145 7.712639 TGGTGAGATAAATTGTGCTAAGAGATC 59.287 37.037 0.00 0.00 0.00 2.75
145 146 7.568349 TGGTGAGATAAATTGTGCTAAGAGAT 58.432 34.615 0.00 0.00 0.00 2.75
146 147 6.946340 TGGTGAGATAAATTGTGCTAAGAGA 58.054 36.000 0.00 0.00 0.00 3.10
147 148 7.281774 ACATGGTGAGATAAATTGTGCTAAGAG 59.718 37.037 0.00 0.00 0.00 2.85
148 149 7.112122 ACATGGTGAGATAAATTGTGCTAAGA 58.888 34.615 0.00 0.00 0.00 2.10
149 150 7.325660 ACATGGTGAGATAAATTGTGCTAAG 57.674 36.000 0.00 0.00 0.00 2.18
150 151 7.701539 AACATGGTGAGATAAATTGTGCTAA 57.298 32.000 0.00 0.00 0.00 3.09
151 152 7.701539 AAACATGGTGAGATAAATTGTGCTA 57.298 32.000 0.00 0.00 0.00 3.49
152 153 6.594788 AAACATGGTGAGATAAATTGTGCT 57.405 33.333 0.00 0.00 0.00 4.40
153 154 8.755696 TTAAAACATGGTGAGATAAATTGTGC 57.244 30.769 0.00 0.00 0.00 4.57
154 155 9.357652 CCTTAAAACATGGTGAGATAAATTGTG 57.642 33.333 0.00 0.00 0.00 3.33
155 156 9.308000 TCCTTAAAACATGGTGAGATAAATTGT 57.692 29.630 0.00 0.00 0.00 2.71
160 161 8.250332 GCAATTCCTTAAAACATGGTGAGATAA 58.750 33.333 0.00 0.00 0.00 1.75
161 162 7.615365 AGCAATTCCTTAAAACATGGTGAGATA 59.385 33.333 0.00 0.00 0.00 1.98
162 163 6.438425 AGCAATTCCTTAAAACATGGTGAGAT 59.562 34.615 0.00 0.00 0.00 2.75
163 164 5.774690 AGCAATTCCTTAAAACATGGTGAGA 59.225 36.000 0.00 0.00 0.00 3.27
164 165 6.029346 AGCAATTCCTTAAAACATGGTGAG 57.971 37.500 0.00 0.00 0.00 3.51
165 166 6.719370 ACTAGCAATTCCTTAAAACATGGTGA 59.281 34.615 0.00 0.00 0.00 4.02
166 167 6.924111 ACTAGCAATTCCTTAAAACATGGTG 58.076 36.000 0.00 0.00 0.00 4.17
167 168 7.539034 AACTAGCAATTCCTTAAAACATGGT 57.461 32.000 0.00 0.00 0.00 3.55
178 179 9.566432 CCTTATCTTCAATAACTAGCAATTCCT 57.434 33.333 0.00 0.00 0.00 3.36
179 180 8.293157 GCCTTATCTTCAATAACTAGCAATTCC 58.707 37.037 0.00 0.00 0.00 3.01
180 181 9.061435 AGCCTTATCTTCAATAACTAGCAATTC 57.939 33.333 0.00 0.00 0.00 2.17
181 182 8.986929 AGCCTTATCTTCAATAACTAGCAATT 57.013 30.769 0.00 0.00 0.00 2.32
183 184 9.547753 CTTAGCCTTATCTTCAATAACTAGCAA 57.452 33.333 0.00 0.00 0.00 3.91
184 185 8.924303 TCTTAGCCTTATCTTCAATAACTAGCA 58.076 33.333 0.00 0.00 0.00 3.49
185 186 9.936759 ATCTTAGCCTTATCTTCAATAACTAGC 57.063 33.333 0.00 0.00 0.00 3.42
235 236 9.624697 GTCTTGCATGTAATTTAAAGATGACAA 57.375 29.630 0.00 2.95 0.00 3.18
236 237 9.013229 AGTCTTGCATGTAATTTAAAGATGACA 57.987 29.630 0.00 0.00 0.00 3.58
237 238 9.846248 AAGTCTTGCATGTAATTTAAAGATGAC 57.154 29.630 0.00 0.00 0.00 3.06
251 252 9.846248 GACAATTTTATCTTAAGTCTTGCATGT 57.154 29.630 1.63 2.60 0.00 3.21
270 271 9.859427 CATGTACAATGGTTGATAAGACAATTT 57.141 29.630 0.00 0.00 32.36 1.82
271 272 7.975616 GCATGTACAATGGTTGATAAGACAATT 59.024 33.333 0.00 0.00 32.36 2.32
272 273 7.416664 GGCATGTACAATGGTTGATAAGACAAT 60.417 37.037 0.00 0.00 32.36 2.71
273 274 6.127758 GGCATGTACAATGGTTGATAAGACAA 60.128 38.462 0.00 0.00 0.00 3.18
274 275 5.356751 GGCATGTACAATGGTTGATAAGACA 59.643 40.000 0.00 0.00 0.00 3.41
275 276 5.221048 GGGCATGTACAATGGTTGATAAGAC 60.221 44.000 0.00 0.00 0.00 3.01
276 277 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
277 278 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
278 279 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
279 280 4.080072 TGAGGGCATGTACAATGGTTGATA 60.080 41.667 0.00 0.00 0.00 2.15
280 281 3.290710 GAGGGCATGTACAATGGTTGAT 58.709 45.455 0.00 0.00 0.00 2.57
281 282 2.040947 TGAGGGCATGTACAATGGTTGA 59.959 45.455 0.00 0.00 0.00 3.18
282 283 2.424601 CTGAGGGCATGTACAATGGTTG 59.575 50.000 0.00 0.00 0.00 3.77
283 284 2.041620 ACTGAGGGCATGTACAATGGTT 59.958 45.455 0.00 0.00 0.00 3.67
284 285 1.635487 ACTGAGGGCATGTACAATGGT 59.365 47.619 0.00 0.00 0.00 3.55
285 286 2.292267 GACTGAGGGCATGTACAATGG 58.708 52.381 0.00 0.00 0.00 3.16
286 287 2.941064 CTGACTGAGGGCATGTACAATG 59.059 50.000 0.00 0.12 0.00 2.82
287 288 2.681976 GCTGACTGAGGGCATGTACAAT 60.682 50.000 0.00 0.00 0.00 2.71
288 289 1.339055 GCTGACTGAGGGCATGTACAA 60.339 52.381 0.00 0.00 0.00 2.41
289 290 0.250234 GCTGACTGAGGGCATGTACA 59.750 55.000 0.00 0.00 0.00 2.90
290 291 0.462759 GGCTGACTGAGGGCATGTAC 60.463 60.000 0.00 0.00 0.00 2.90
291 292 0.909133 TGGCTGACTGAGGGCATGTA 60.909 55.000 0.00 0.00 33.16 2.29
292 293 2.226315 TGGCTGACTGAGGGCATGT 61.226 57.895 0.00 0.00 33.16 3.21
293 294 1.748122 GTGGCTGACTGAGGGCATG 60.748 63.158 0.00 0.00 40.00 4.06
294 295 2.673523 GTGGCTGACTGAGGGCAT 59.326 61.111 0.00 0.00 40.00 4.40
295 296 4.007644 CGTGGCTGACTGAGGGCA 62.008 66.667 0.00 0.00 35.68 5.36
308 309 3.414700 GTTCACTCCTGCGCGTGG 61.415 66.667 8.43 11.15 0.00 4.94
309 310 3.414700 GGTTCACTCCTGCGCGTG 61.415 66.667 8.43 4.67 0.00 5.34
310 311 4.681978 GGGTTCACTCCTGCGCGT 62.682 66.667 8.43 0.00 0.00 6.01
311 312 4.680237 TGGGTTCACTCCTGCGCG 62.680 66.667 0.00 0.00 0.00 6.86
312 313 3.050275 GTGGGTTCACTCCTGCGC 61.050 66.667 0.00 0.00 40.58 6.09
313 314 1.961277 GTGTGGGTTCACTCCTGCG 60.961 63.158 0.00 0.00 43.94 5.18
314 315 1.148273 TGTGTGGGTTCACTCCTGC 59.852 57.895 0.00 0.00 43.94 4.85
315 316 0.469917 AGTGTGTGGGTTCACTCCTG 59.530 55.000 0.00 0.00 43.94 3.86
316 317 1.213296 AAGTGTGTGGGTTCACTCCT 58.787 50.000 0.00 0.00 42.95 3.69
317 318 2.052782 AAAGTGTGTGGGTTCACTCC 57.947 50.000 0.00 0.00 42.95 3.85
356 357 9.606631 ACCTCTAACAATAATGCAAAACAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
363 364 9.679661 TCAGAATACCTCTAACAATAATGCAAA 57.320 29.630 0.00 0.00 31.12 3.68
364 365 9.679661 TTCAGAATACCTCTAACAATAATGCAA 57.320 29.630 0.00 0.00 31.12 4.08
365 366 9.679661 TTTCAGAATACCTCTAACAATAATGCA 57.320 29.630 0.00 0.00 31.12 3.96
423 424 9.279904 CATACAGTCAAACGTTTCTTACAAAAA 57.720 29.630 11.37 0.00 0.00 1.94
424 425 7.429920 GCATACAGTCAAACGTTTCTTACAAAA 59.570 33.333 11.37 0.55 0.00 2.44
425 426 6.908284 GCATACAGTCAAACGTTTCTTACAAA 59.092 34.615 11.37 0.87 0.00 2.83
426 427 6.037281 TGCATACAGTCAAACGTTTCTTACAA 59.963 34.615 11.37 0.00 0.00 2.41
427 428 5.524281 TGCATACAGTCAAACGTTTCTTACA 59.476 36.000 11.37 0.00 0.00 2.41
428 429 5.981174 TGCATACAGTCAAACGTTTCTTAC 58.019 37.500 11.37 9.79 0.00 2.34
429 430 6.795098 ATGCATACAGTCAAACGTTTCTTA 57.205 33.333 11.37 0.00 0.00 2.10
430 431 5.689383 ATGCATACAGTCAAACGTTTCTT 57.311 34.783 11.37 0.00 0.00 2.52
431 432 5.689383 AATGCATACAGTCAAACGTTTCT 57.311 34.783 11.37 3.26 0.00 2.52
432 433 7.845617 TTAAATGCATACAGTCAAACGTTTC 57.154 32.000 11.37 0.55 0.00 2.78
433 434 8.635877 TTTTAAATGCATACAGTCAAACGTTT 57.364 26.923 7.96 7.96 0.00 3.60
434 435 8.635877 TTTTTAAATGCATACAGTCAAACGTT 57.364 26.923 0.00 0.00 0.00 3.99
435 436 8.810652 ATTTTTAAATGCATACAGTCAAACGT 57.189 26.923 0.00 0.00 0.00 3.99
460 461 9.238368 CCCAATCACTTTTTGAATTACCTAGTA 57.762 33.333 0.00 0.00 37.92 1.82
461 462 7.728532 ACCCAATCACTTTTTGAATTACCTAGT 59.271 33.333 0.00 0.00 37.92 2.57
462 463 8.122472 ACCCAATCACTTTTTGAATTACCTAG 57.878 34.615 0.00 0.00 37.92 3.02
463 464 9.762381 ATACCCAATCACTTTTTGAATTACCTA 57.238 29.630 0.00 0.00 37.92 3.08
464 465 6.994421 ACCCAATCACTTTTTGAATTACCT 57.006 33.333 0.00 0.00 37.92 3.08
465 466 9.719355 AAATACCCAATCACTTTTTGAATTACC 57.281 29.630 0.00 0.00 37.92 2.85
475 476 8.998377 GCATTTTGTTAAATACCCAATCACTTT 58.002 29.630 0.00 0.00 32.75 2.66
476 477 8.374743 AGCATTTTGTTAAATACCCAATCACTT 58.625 29.630 0.00 0.00 32.75 3.16
477 478 7.906327 AGCATTTTGTTAAATACCCAATCACT 58.094 30.769 0.00 0.00 32.75 3.41
478 479 8.442384 CAAGCATTTTGTTAAATACCCAATCAC 58.558 33.333 0.00 0.00 32.75 3.06
479 480 8.153550 ACAAGCATTTTGTTAAATACCCAATCA 58.846 29.630 0.00 0.00 32.75 2.57
480 481 8.442384 CACAAGCATTTTGTTAAATACCCAATC 58.558 33.333 0.00 0.00 32.75 2.67
481 482 7.390162 CCACAAGCATTTTGTTAAATACCCAAT 59.610 33.333 0.00 0.00 32.75 3.16
482 483 6.708054 CCACAAGCATTTTGTTAAATACCCAA 59.292 34.615 0.00 0.00 32.75 4.12
483 484 6.183361 ACCACAAGCATTTTGTTAAATACCCA 60.183 34.615 0.00 0.00 32.75 4.51
484 485 6.227522 ACCACAAGCATTTTGTTAAATACCC 58.772 36.000 0.00 0.00 32.75 3.69
485 486 8.996024 ATACCACAAGCATTTTGTTAAATACC 57.004 30.769 0.00 0.00 32.75 2.73
486 487 9.855021 AGATACCACAAGCATTTTGTTAAATAC 57.145 29.630 0.00 0.00 32.75 1.89
536 537 8.920665 CGGCATTAGAAATAAAAATCACAAACA 58.079 29.630 0.00 0.00 0.00 2.83
537 538 7.897800 GCGGCATTAGAAATAAAAATCACAAAC 59.102 33.333 0.00 0.00 0.00 2.93
538 539 7.600375 TGCGGCATTAGAAATAAAAATCACAAA 59.400 29.630 0.00 0.00 0.00 2.83
539 540 7.093354 TGCGGCATTAGAAATAAAAATCACAA 58.907 30.769 0.00 0.00 0.00 3.33
540 541 6.625362 TGCGGCATTAGAAATAAAAATCACA 58.375 32.000 0.00 0.00 0.00 3.58
541 542 7.518731 TTGCGGCATTAGAAATAAAAATCAC 57.481 32.000 2.28 0.00 0.00 3.06
542 543 8.715191 ATTTGCGGCATTAGAAATAAAAATCA 57.285 26.923 2.28 0.00 0.00 2.57
543 544 9.034544 AGATTTGCGGCATTAGAAATAAAAATC 57.965 29.630 2.28 5.56 32.90 2.17
544 545 8.947055 AGATTTGCGGCATTAGAAATAAAAAT 57.053 26.923 2.28 0.00 0.00 1.82
545 546 9.862371 TTAGATTTGCGGCATTAGAAATAAAAA 57.138 25.926 2.28 0.00 0.00 1.94
550 551 9.846248 GATAATTAGATTTGCGGCATTAGAAAT 57.154 29.630 2.28 0.00 0.00 2.17
551 552 8.015087 CGATAATTAGATTTGCGGCATTAGAAA 58.985 33.333 2.28 0.00 0.00 2.52
552 553 7.386573 TCGATAATTAGATTTGCGGCATTAGAA 59.613 33.333 2.28 0.00 0.00 2.10
553 554 6.871492 TCGATAATTAGATTTGCGGCATTAGA 59.129 34.615 2.28 0.00 0.00 2.10
554 555 7.060600 TCGATAATTAGATTTGCGGCATTAG 57.939 36.000 2.28 0.00 0.00 1.73
555 556 6.649141 ACTCGATAATTAGATTTGCGGCATTA 59.351 34.615 2.28 0.00 0.00 1.90
556 557 5.470098 ACTCGATAATTAGATTTGCGGCATT 59.530 36.000 2.28 0.00 0.00 3.56
557 558 4.997395 ACTCGATAATTAGATTTGCGGCAT 59.003 37.500 2.28 0.00 0.00 4.40
558 559 4.377021 ACTCGATAATTAGATTTGCGGCA 58.623 39.130 0.00 0.00 0.00 5.69
559 560 4.992381 ACTCGATAATTAGATTTGCGGC 57.008 40.909 0.00 0.00 0.00 6.53
560 561 5.924254 TGGTACTCGATAATTAGATTTGCGG 59.076 40.000 0.00 0.00 0.00 5.69
561 562 7.582435 ATGGTACTCGATAATTAGATTTGCG 57.418 36.000 0.00 0.00 0.00 4.85
562 563 9.640963 AGTATGGTACTCGATAATTAGATTTGC 57.359 33.333 0.00 0.00 32.47 3.68
564 565 9.640963 GCAGTATGGTACTCGATAATTAGATTT 57.359 33.333 0.00 0.00 36.76 2.17
590 591 2.514592 CCCATGGCAGGTGCGTAG 60.515 66.667 6.09 0.00 43.26 3.51
591 592 4.108299 CCCCATGGCAGGTGCGTA 62.108 66.667 6.09 0.00 43.26 4.42
606 607 4.299796 TTGGTCTTGGCTGGCCCC 62.300 66.667 9.28 0.00 34.56 5.80
1050 2543 1.813513 CCTTGCTCTGAATCACCGTT 58.186 50.000 0.00 0.00 0.00 4.44
1084 2577 3.382832 CTCGGAGTTGCGGACCCT 61.383 66.667 0.00 0.00 0.00 4.34
2323 4214 3.028850 CAGGCCATCCATTGTCATCTTT 58.971 45.455 5.01 0.00 33.74 2.52
2388 4279 2.172082 ACATGCTGCATGGACAGATAGT 59.828 45.455 37.16 16.90 45.16 2.12
2413 4304 5.062809 GCTGAATACTCTTCTTACACTGTGC 59.937 44.000 7.90 0.00 0.00 4.57
2435 4326 1.260544 GCCAATGAAACCCTGAAGCT 58.739 50.000 0.00 0.00 0.00 3.74
2750 4641 5.447683 CGAACTCCATTATGTGTGAACCATG 60.448 44.000 0.00 0.00 0.00 3.66
2752 4643 4.000325 CGAACTCCATTATGTGTGAACCA 59.000 43.478 0.00 0.00 0.00 3.67
2892 4783 1.403780 GGTGCCTCGAATACGTCTTGT 60.404 52.381 0.00 0.00 40.69 3.16
3006 4897 6.072175 GCAGTGGAATGTTATGGTCAAAACTA 60.072 38.462 0.00 0.00 0.00 2.24
3186 5077 2.627699 ACAAAAACGCCATGAACCATCT 59.372 40.909 0.00 0.00 0.00 2.90
3276 5167 1.468054 GCACCGGACAATTCATCAAGC 60.468 52.381 9.46 0.00 0.00 4.01
3521 5589 1.292223 GTAGGCCACTGAGCGACAA 59.708 57.895 5.01 0.00 0.00 3.18
3834 5902 1.451449 TGGGTCCCAAAGCCTTTCTA 58.549 50.000 8.65 0.00 46.32 2.10
3837 5905 0.560688 TCTTGGGTCCCAAAGCCTTT 59.439 50.000 23.89 0.00 43.44 3.11
4003 7211 5.104982 TCAGAAAAGCCTTTTGTTGGATGTT 60.105 36.000 7.25 0.00 31.94 2.71
4131 7339 1.554160 CACTTGGGCTGACAGAGAGAT 59.446 52.381 6.65 0.00 0.00 2.75
4303 7511 2.686915 GCAGAATAGCTTGATGTGCCTT 59.313 45.455 0.00 0.00 0.00 4.35
4743 7951 5.212532 ACAAAGATTGCCAAACATTGCTA 57.787 34.783 3.06 0.00 0.00 3.49
5345 8553 3.121019 CCGGTAGAGAGGGCTTCG 58.879 66.667 0.00 0.00 0.00 3.79
5538 8749 3.414136 AAACCGGTGCTGGAGTGCA 62.414 57.895 8.52 0.00 41.05 4.57
5622 8833 4.299796 TTGGTCTTGGCTGGCCCC 62.300 66.667 9.28 0.00 34.56 5.80
5819 9338 1.482593 GATGAGAAGAGGGGAAAGCGA 59.517 52.381 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.