Multiple sequence alignment - TraesCS2A01G463400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G463400 chr2A 100.000 2759 0 0 1 2759 709186705 709183947 0.000000e+00 5096
1 TraesCS2A01G463400 chr2A 88.264 605 55 5 1138 1730 709126695 709126095 0.000000e+00 710
2 TraesCS2A01G463400 chr2A 83.427 356 28 9 799 1148 709153372 709153042 4.470000e-78 302
3 TraesCS2A01G463400 chr2A 85.161 155 16 6 1763 1915 709126095 709125946 4.760000e-33 152
4 TraesCS2A01G463400 chr2D 91.645 1963 128 13 687 2644 570090152 570088221 0.000000e+00 2684
5 TraesCS2A01G463400 chr2D 91.280 1078 57 9 864 1928 570063161 570062108 0.000000e+00 1435
6 TraesCS2A01G463400 chr2D 88.616 1142 93 19 795 1915 569854360 569853235 0.000000e+00 1354
7 TraesCS2A01G463400 chr2D 86.797 818 75 11 1928 2722 570058647 570057840 0.000000e+00 881
8 TraesCS2A01G463400 chr2D 87.891 256 16 4 271 511 570091056 570090801 1.250000e-73 287
9 TraesCS2A01G463400 chr2D 96.815 157 5 0 512 668 570090364 570090208 2.110000e-66 263
10 TraesCS2A01G463400 chr2D 91.549 71 6 0 2644 2714 570088197 570088127 6.290000e-17 99
11 TraesCS2A01G463400 chr2B 88.958 2101 176 19 687 2759 682573822 682571750 0.000000e+00 2543
12 TraesCS2A01G463400 chr2B 87.855 1128 90 19 799 1915 682227499 682226408 0.000000e+00 1280
13 TraesCS2A01G463400 chr2B 86.328 256 20 8 271 511 682574656 682574401 5.860000e-67 265
14 TraesCS2A01G463400 chrUn 95.865 266 11 0 6 271 99721638 99721373 5.460000e-117 431
15 TraesCS2A01G463400 chrUn 95.489 266 12 0 6 271 99736124 99735859 2.540000e-115 425
16 TraesCS2A01G463400 chrUn 95.489 266 12 0 6 271 216753238 216752973 2.540000e-115 425
17 TraesCS2A01G463400 chr1D 95.221 272 13 0 1 272 410662118 410662389 5.460000e-117 431
18 TraesCS2A01G463400 chr1D 95.489 266 12 0 6 271 441643971 441644236 2.540000e-115 425
19 TraesCS2A01G463400 chr3A 95.849 265 11 0 8 272 646617022 646616758 1.960000e-116 429
20 TraesCS2A01G463400 chr5D 95.506 267 10 2 6 271 506105826 506105561 2.540000e-115 425
21 TraesCS2A01G463400 chr5A 95.131 267 13 0 6 272 666051576 666051842 3.290000e-114 422
22 TraesCS2A01G463400 chr7D 94.505 273 14 1 6 278 180969265 180969536 1.180000e-113 420
23 TraesCS2A01G463400 chr4D 80.488 410 62 11 1313 1713 685261 684861 5.780000e-77 298
24 TraesCS2A01G463400 chr4A 83.793 290 41 5 1305 1588 933119 932830 1.260000e-68 270
25 TraesCS2A01G463400 chr4B 82.943 299 45 5 1296 1588 1102327 1102625 5.860000e-67 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G463400 chr2A 709183947 709186705 2758 True 5096.00 5096 100.0000 1 2759 1 chr2A.!!$R2 2758
1 TraesCS2A01G463400 chr2A 709125946 709126695 749 True 431.00 710 86.7125 1138 1915 2 chr2A.!!$R3 777
2 TraesCS2A01G463400 chr2D 569853235 569854360 1125 True 1354.00 1354 88.6160 795 1915 1 chr2D.!!$R1 1120
3 TraesCS2A01G463400 chr2D 570057840 570063161 5321 True 1158.00 1435 89.0385 864 2722 2 chr2D.!!$R2 1858
4 TraesCS2A01G463400 chr2D 570088127 570091056 2929 True 833.25 2684 91.9750 271 2714 4 chr2D.!!$R3 2443
5 TraesCS2A01G463400 chr2B 682571750 682574656 2906 True 1404.00 2543 87.6430 271 2759 2 chr2B.!!$R2 2488
6 TraesCS2A01G463400 chr2B 682226408 682227499 1091 True 1280.00 1280 87.8550 799 1915 1 chr2B.!!$R1 1116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 1134 0.037326 AAGGTGAAGAAGCGCGATGA 60.037 50.0 12.1 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 6380 0.248458 AAGCGCGACAAACACTTTGG 60.248 50.0 12.1 0.0 44.81 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.374745 TGTTTCGTACGTGTTCTTCTCC 58.625 45.455 16.05 0.00 0.00 3.71
22 23 3.067180 TGTTTCGTACGTGTTCTTCTCCT 59.933 43.478 16.05 0.00 0.00 3.69
23 24 3.996150 TTCGTACGTGTTCTTCTCCTT 57.004 42.857 16.05 0.00 0.00 3.36
24 25 3.996150 TCGTACGTGTTCTTCTCCTTT 57.004 42.857 16.05 0.00 0.00 3.11
25 26 3.893720 TCGTACGTGTTCTTCTCCTTTC 58.106 45.455 16.05 0.00 0.00 2.62
26 27 3.567164 TCGTACGTGTTCTTCTCCTTTCT 59.433 43.478 16.05 0.00 0.00 2.52
27 28 4.756642 TCGTACGTGTTCTTCTCCTTTCTA 59.243 41.667 16.05 0.00 0.00 2.10
28 29 5.413833 TCGTACGTGTTCTTCTCCTTTCTAT 59.586 40.000 16.05 0.00 0.00 1.98
29 30 6.072286 TCGTACGTGTTCTTCTCCTTTCTATT 60.072 38.462 16.05 0.00 0.00 1.73
30 31 7.119699 TCGTACGTGTTCTTCTCCTTTCTATTA 59.880 37.037 16.05 0.00 0.00 0.98
31 32 7.428761 CGTACGTGTTCTTCTCCTTTCTATTAG 59.571 40.741 7.22 0.00 0.00 1.73
32 33 7.463961 ACGTGTTCTTCTCCTTTCTATTAGA 57.536 36.000 0.00 0.00 0.00 2.10
33 34 7.540299 ACGTGTTCTTCTCCTTTCTATTAGAG 58.460 38.462 0.00 0.00 0.00 2.43
34 35 6.975772 CGTGTTCTTCTCCTTTCTATTAGAGG 59.024 42.308 0.00 0.00 0.00 3.69
35 36 7.363094 CGTGTTCTTCTCCTTTCTATTAGAGGT 60.363 40.741 0.00 0.00 32.33 3.85
36 37 7.977293 GTGTTCTTCTCCTTTCTATTAGAGGTC 59.023 40.741 0.00 0.00 32.33 3.85
37 38 7.896496 TGTTCTTCTCCTTTCTATTAGAGGTCT 59.104 37.037 0.00 0.00 32.33 3.85
38 39 8.755028 GTTCTTCTCCTTTCTATTAGAGGTCTT 58.245 37.037 0.00 0.00 32.33 3.01
39 40 8.299990 TCTTCTCCTTTCTATTAGAGGTCTTG 57.700 38.462 0.00 0.00 32.33 3.02
40 41 6.472686 TCTCCTTTCTATTAGAGGTCTTGC 57.527 41.667 0.00 0.00 32.33 4.01
41 42 6.198639 TCTCCTTTCTATTAGAGGTCTTGCT 58.801 40.000 0.00 0.00 32.33 3.91
42 43 7.355101 TCTCCTTTCTATTAGAGGTCTTGCTA 58.645 38.462 0.00 0.00 32.33 3.49
43 44 7.285858 TCTCCTTTCTATTAGAGGTCTTGCTAC 59.714 40.741 0.00 0.00 32.33 3.58
44 45 6.895756 TCCTTTCTATTAGAGGTCTTGCTACA 59.104 38.462 0.00 0.00 32.33 2.74
45 46 7.068839 TCCTTTCTATTAGAGGTCTTGCTACAG 59.931 40.741 0.00 0.00 32.33 2.74
46 47 7.147811 CCTTTCTATTAGAGGTCTTGCTACAGT 60.148 40.741 0.00 0.00 0.00 3.55
47 48 7.719871 TTCTATTAGAGGTCTTGCTACAGTT 57.280 36.000 0.00 0.00 0.00 3.16
48 49 7.336161 TCTATTAGAGGTCTTGCTACAGTTC 57.664 40.000 0.00 0.00 0.00 3.01
49 50 4.803098 TTAGAGGTCTTGCTACAGTTCC 57.197 45.455 0.00 0.00 0.00 3.62
50 51 2.896039 AGAGGTCTTGCTACAGTTCCT 58.104 47.619 0.00 0.00 0.00 3.36
51 52 3.243724 AGAGGTCTTGCTACAGTTCCTT 58.756 45.455 0.00 0.00 0.00 3.36
52 53 4.417437 AGAGGTCTTGCTACAGTTCCTTA 58.583 43.478 0.00 0.00 0.00 2.69
53 54 5.026790 AGAGGTCTTGCTACAGTTCCTTAT 58.973 41.667 0.00 0.00 0.00 1.73
54 55 5.485708 AGAGGTCTTGCTACAGTTCCTTATT 59.514 40.000 0.00 0.00 0.00 1.40
55 56 5.735766 AGGTCTTGCTACAGTTCCTTATTC 58.264 41.667 0.00 0.00 0.00 1.75
56 57 5.485708 AGGTCTTGCTACAGTTCCTTATTCT 59.514 40.000 0.00 0.00 0.00 2.40
57 58 6.668283 AGGTCTTGCTACAGTTCCTTATTCTA 59.332 38.462 0.00 0.00 0.00 2.10
58 59 6.981559 GGTCTTGCTACAGTTCCTTATTCTAG 59.018 42.308 0.00 0.00 0.00 2.43
59 60 7.363968 GGTCTTGCTACAGTTCCTTATTCTAGT 60.364 40.741 0.00 0.00 0.00 2.57
60 61 8.684520 GTCTTGCTACAGTTCCTTATTCTAGTA 58.315 37.037 0.00 0.00 0.00 1.82
61 62 9.422681 TCTTGCTACAGTTCCTTATTCTAGTAT 57.577 33.333 0.00 0.00 0.00 2.12
64 65 9.817809 TGCTACAGTTCCTTATTCTAGTATTTG 57.182 33.333 0.00 0.00 0.00 2.32
65 66 8.766151 GCTACAGTTCCTTATTCTAGTATTTGC 58.234 37.037 0.00 0.00 0.00 3.68
66 67 9.262358 CTACAGTTCCTTATTCTAGTATTTGCC 57.738 37.037 0.00 0.00 0.00 4.52
67 68 7.054751 ACAGTTCCTTATTCTAGTATTTGCCC 58.945 38.462 0.00 0.00 0.00 5.36
68 69 7.092399 ACAGTTCCTTATTCTAGTATTTGCCCT 60.092 37.037 0.00 0.00 0.00 5.19
69 70 8.429641 CAGTTCCTTATTCTAGTATTTGCCCTA 58.570 37.037 0.00 0.00 0.00 3.53
70 71 8.652290 AGTTCCTTATTCTAGTATTTGCCCTAG 58.348 37.037 0.00 0.00 33.46 3.02
71 72 8.648693 GTTCCTTATTCTAGTATTTGCCCTAGA 58.351 37.037 0.00 0.00 38.26 2.43
72 73 8.974292 TCCTTATTCTAGTATTTGCCCTAGAT 57.026 34.615 0.00 0.00 39.40 1.98
82 83 8.728596 AGTATTTGCCCTAGATATGTTAGACT 57.271 34.615 0.00 0.00 0.00 3.24
83 84 8.808092 AGTATTTGCCCTAGATATGTTAGACTC 58.192 37.037 0.00 0.00 0.00 3.36
84 85 7.863901 ATTTGCCCTAGATATGTTAGACTCT 57.136 36.000 0.00 0.00 0.00 3.24
85 86 8.958060 ATTTGCCCTAGATATGTTAGACTCTA 57.042 34.615 0.00 0.00 0.00 2.43
86 87 8.958060 TTTGCCCTAGATATGTTAGACTCTAT 57.042 34.615 0.00 0.00 0.00 1.98
87 88 8.958060 TTGCCCTAGATATGTTAGACTCTATT 57.042 34.615 0.00 0.00 0.00 1.73
88 89 8.958060 TGCCCTAGATATGTTAGACTCTATTT 57.042 34.615 0.00 0.00 0.00 1.40
89 90 9.026121 TGCCCTAGATATGTTAGACTCTATTTC 57.974 37.037 0.00 0.00 0.00 2.17
90 91 9.026121 GCCCTAGATATGTTAGACTCTATTTCA 57.974 37.037 0.00 0.00 0.00 2.69
104 105 8.997323 AGACTCTATTTCATATATGCAACTTGC 58.003 33.333 7.92 6.82 45.29 4.01
105 106 8.915057 ACTCTATTTCATATATGCAACTTGCT 57.085 30.769 14.78 3.57 45.31 3.91
112 113 9.559732 TTTCATATATGCAACTTGCTATACTGT 57.440 29.630 14.78 0.00 45.31 3.55
113 114 8.763049 TCATATATGCAACTTGCTATACTGTC 57.237 34.615 14.78 0.00 45.31 3.51
114 115 8.588472 TCATATATGCAACTTGCTATACTGTCT 58.412 33.333 14.78 0.41 45.31 3.41
115 116 8.654215 CATATATGCAACTTGCTATACTGTCTG 58.346 37.037 14.78 6.09 45.31 3.51
116 117 3.002791 TGCAACTTGCTATACTGTCTGC 58.997 45.455 14.78 0.00 45.31 4.26
117 118 3.265791 GCAACTTGCTATACTGTCTGCT 58.734 45.455 6.50 0.00 40.96 4.24
118 119 3.686726 GCAACTTGCTATACTGTCTGCTT 59.313 43.478 6.50 0.00 40.96 3.91
119 120 4.154918 GCAACTTGCTATACTGTCTGCTTT 59.845 41.667 6.50 0.00 40.96 3.51
120 121 5.351465 GCAACTTGCTATACTGTCTGCTTTA 59.649 40.000 6.50 0.00 40.96 1.85
121 122 6.456181 GCAACTTGCTATACTGTCTGCTTTAG 60.456 42.308 6.50 0.00 40.96 1.85
122 123 6.531503 ACTTGCTATACTGTCTGCTTTAGA 57.468 37.500 0.00 0.00 0.00 2.10
123 124 7.118496 ACTTGCTATACTGTCTGCTTTAGAT 57.882 36.000 0.00 0.00 37.83 1.98
124 125 8.239038 ACTTGCTATACTGTCTGCTTTAGATA 57.761 34.615 0.00 0.00 37.83 1.98
125 126 8.865090 ACTTGCTATACTGTCTGCTTTAGATAT 58.135 33.333 0.00 0.00 37.83 1.63
126 127 9.138062 CTTGCTATACTGTCTGCTTTAGATATG 57.862 37.037 0.00 0.00 37.83 1.78
127 128 8.183104 TGCTATACTGTCTGCTTTAGATATGT 57.817 34.615 0.00 0.00 37.83 2.29
128 129 8.642432 TGCTATACTGTCTGCTTTAGATATGTT 58.358 33.333 0.00 0.00 37.83 2.71
129 130 9.482627 GCTATACTGTCTGCTTTAGATATGTTT 57.517 33.333 0.00 0.00 37.83 2.83
172 173 9.793259 TGAAGATATTGTTTACCTTCTCTTTGT 57.207 29.630 0.00 0.00 35.53 2.83
174 175 9.793259 AAGATATTGTTTACCTTCTCTTTGTCA 57.207 29.630 0.00 0.00 0.00 3.58
175 176 9.793259 AGATATTGTTTACCTTCTCTTTGTCAA 57.207 29.630 0.00 0.00 0.00 3.18
179 180 6.954944 TGTTTACCTTCTCTTTGTCAAATCG 58.045 36.000 0.00 0.00 0.00 3.34
180 181 5.607119 TTACCTTCTCTTTGTCAAATCGC 57.393 39.130 0.00 0.00 0.00 4.58
181 182 3.476552 ACCTTCTCTTTGTCAAATCGCA 58.523 40.909 0.00 0.00 0.00 5.10
182 183 4.074970 ACCTTCTCTTTGTCAAATCGCAT 58.925 39.130 0.00 0.00 0.00 4.73
183 184 5.245531 ACCTTCTCTTTGTCAAATCGCATA 58.754 37.500 0.00 0.00 0.00 3.14
184 185 5.352569 ACCTTCTCTTTGTCAAATCGCATAG 59.647 40.000 0.00 0.00 0.00 2.23
185 186 4.864916 TCTCTTTGTCAAATCGCATAGC 57.135 40.909 0.00 0.00 0.00 2.97
186 187 4.507710 TCTCTTTGTCAAATCGCATAGCT 58.492 39.130 0.00 0.00 0.00 3.32
187 188 4.937620 TCTCTTTGTCAAATCGCATAGCTT 59.062 37.500 0.00 0.00 0.00 3.74
188 189 4.973396 TCTTTGTCAAATCGCATAGCTTG 58.027 39.130 0.00 0.00 0.00 4.01
189 190 4.455533 TCTTTGTCAAATCGCATAGCTTGT 59.544 37.500 0.00 0.00 0.00 3.16
190 191 4.764679 TTGTCAAATCGCATAGCTTGTT 57.235 36.364 0.00 0.00 0.00 2.83
191 192 4.764679 TGTCAAATCGCATAGCTTGTTT 57.235 36.364 0.00 0.00 0.00 2.83
192 193 5.119931 TGTCAAATCGCATAGCTTGTTTT 57.880 34.783 0.00 0.00 0.00 2.43
193 194 6.247727 TGTCAAATCGCATAGCTTGTTTTA 57.752 33.333 0.00 0.00 0.00 1.52
194 195 6.851609 TGTCAAATCGCATAGCTTGTTTTAT 58.148 32.000 0.00 0.00 0.00 1.40
195 196 6.966632 TGTCAAATCGCATAGCTTGTTTTATC 59.033 34.615 0.00 0.00 0.00 1.75
196 197 6.966632 GTCAAATCGCATAGCTTGTTTTATCA 59.033 34.615 0.00 0.00 0.00 2.15
197 198 7.645340 GTCAAATCGCATAGCTTGTTTTATCAT 59.355 33.333 0.00 0.00 0.00 2.45
198 199 8.190122 TCAAATCGCATAGCTTGTTTTATCATT 58.810 29.630 0.00 0.00 0.00 2.57
199 200 9.449550 CAAATCGCATAGCTTGTTTTATCATTA 57.550 29.630 0.00 0.00 0.00 1.90
200 201 9.450807 AAATCGCATAGCTTGTTTTATCATTAC 57.549 29.630 0.00 0.00 0.00 1.89
201 202 7.786178 TCGCATAGCTTGTTTTATCATTACT 57.214 32.000 0.00 0.00 0.00 2.24
202 203 8.880878 TCGCATAGCTTGTTTTATCATTACTA 57.119 30.769 0.00 0.00 0.00 1.82
203 204 9.489084 TCGCATAGCTTGTTTTATCATTACTAT 57.511 29.630 0.00 0.00 0.00 2.12
266 267 8.784043 ACTATTCGGTAAATTGCTCATATTTCC 58.216 33.333 0.00 0.00 0.00 3.13
267 268 7.581213 ATTCGGTAAATTGCTCATATTTCCA 57.419 32.000 0.00 0.00 0.00 3.53
268 269 7.397892 TTCGGTAAATTGCTCATATTTCCAA 57.602 32.000 0.00 0.00 0.00 3.53
269 270 6.791303 TCGGTAAATTGCTCATATTTCCAAC 58.209 36.000 0.00 0.00 0.00 3.77
369 370 8.373256 CAACATCTAGTTATACAACAACACTCG 58.627 37.037 0.00 0.00 38.74 4.18
392 407 5.220777 CGTTGATGTGTTTACAAAGTGAGGT 60.221 40.000 0.00 0.00 40.84 3.85
409 424 3.160679 AGGTGTAAGCTTTTGATGGCT 57.839 42.857 3.20 0.00 46.63 4.75
411 426 4.662278 AGGTGTAAGCTTTTGATGGCTTA 58.338 39.130 3.20 3.69 46.63 3.09
500 516 7.167468 GTGTGTTGGTAAAATGCAAGTAGAAAG 59.833 37.037 0.00 0.00 0.00 2.62
615 1069 5.945784 TCTTTTTGCCTCTACAATGCATACT 59.054 36.000 0.00 0.00 34.51 2.12
668 1122 9.460019 TTTGTGTTGATATGATCATAAGGTGAA 57.540 29.630 19.03 1.36 40.97 3.18
669 1123 8.667076 TGTGTTGATATGATCATAAGGTGAAG 57.333 34.615 19.03 0.00 40.97 3.02
671 1125 9.330063 GTGTTGATATGATCATAAGGTGAAGAA 57.670 33.333 19.03 0.00 40.97 2.52
673 1127 8.502387 GTTGATATGATCATAAGGTGAAGAAGC 58.498 37.037 19.03 0.00 40.97 3.86
674 1128 6.870439 TGATATGATCATAAGGTGAAGAAGCG 59.130 38.462 19.03 0.00 40.97 4.68
675 1129 3.198068 TGATCATAAGGTGAAGAAGCGC 58.802 45.455 0.00 0.00 40.97 5.92
676 1130 1.640428 TCATAAGGTGAAGAAGCGCG 58.360 50.000 0.00 0.00 32.78 6.86
678 1132 2.159099 TCATAAGGTGAAGAAGCGCGAT 60.159 45.455 12.10 0.00 32.78 4.58
679 1133 1.640428 TAAGGTGAAGAAGCGCGATG 58.360 50.000 12.10 0.00 0.00 3.84
680 1134 0.037326 AAGGTGAAGAAGCGCGATGA 60.037 50.000 12.10 0.00 0.00 2.92
681 1135 0.037326 AGGTGAAGAAGCGCGATGAA 60.037 50.000 12.10 0.00 0.00 2.57
682 1136 0.371645 GGTGAAGAAGCGCGATGAAG 59.628 55.000 12.10 0.00 0.00 3.02
684 1138 1.322936 GTGAAGAAGCGCGATGAAGAG 59.677 52.381 12.10 0.00 0.00 2.85
685 1139 0.300193 GAAGAAGCGCGATGAAGAGC 59.700 55.000 12.10 0.00 37.19 4.09
768 1259 1.944676 CCCTACGTCAGCGCGAATC 60.945 63.158 12.10 0.00 42.83 2.52
851 1345 5.497474 TCAAATCAGGAGGTTTAAGTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
1019 1516 3.880846 GGAGCAGCATTTCGCCGG 61.881 66.667 0.00 0.00 44.04 6.13
1054 1551 1.626356 ATCATACCACCAGCACCGCT 61.626 55.000 0.00 0.00 40.77 5.52
1162 1659 2.281345 CGGATCATGCCTCCTGCC 60.281 66.667 11.10 0.00 40.16 4.85
1191 1688 2.746904 CTCTCTCTCTTCAAGCTCGTCA 59.253 50.000 0.00 0.00 0.00 4.35
1299 1811 2.748513 GGCCATGCCCATTGCCAAT 61.749 57.895 16.04 0.00 45.86 3.16
1954 5959 9.199982 TGTCTACTAATTAAAAAGGTTCGTGAG 57.800 33.333 0.00 0.00 0.00 3.51
2032 6037 5.952347 AGGAGAAAACAACTGAAGGAAAACT 59.048 36.000 0.00 0.00 0.00 2.66
2034 6039 7.614192 AGGAGAAAACAACTGAAGGAAAACTAA 59.386 33.333 0.00 0.00 0.00 2.24
2053 6058 1.005512 GGAAAACCGGCGGCAAATT 60.006 52.632 28.71 15.77 0.00 1.82
2122 6127 4.702831 TCTTGAGCCGCATATGACAAATA 58.297 39.130 6.97 0.00 0.00 1.40
2123 6128 4.511454 TCTTGAGCCGCATATGACAAATAC 59.489 41.667 6.97 0.00 0.00 1.89
2131 6136 4.154737 CGCATATGACAAATACCATCCCTG 59.845 45.833 6.97 0.00 0.00 4.45
2138 6143 5.104693 TGACAAATACCATCCCTGATACGTT 60.105 40.000 0.00 0.00 0.00 3.99
2143 6148 1.472552 CCATCCCTGATACGTTTGCGA 60.473 52.381 0.00 0.00 42.00 5.10
2169 6174 2.174639 AGCCCGATCACCCATCATTTTA 59.825 45.455 0.00 0.00 0.00 1.52
2176 6181 5.684704 GATCACCCATCATTTTAGGTCTGA 58.315 41.667 0.00 0.00 0.00 3.27
2183 6188 6.183360 CCCATCATTTTAGGTCTGATGCAATT 60.183 38.462 0.00 0.00 43.08 2.32
2240 6245 3.181463 ACACCATGCAACTCAAAAGCAAT 60.181 39.130 0.00 0.00 42.15 3.56
2242 6247 3.069872 ACCATGCAACTCAAAAGCAATGA 59.930 39.130 0.00 0.00 42.15 2.57
2275 6280 1.401761 TATAGCCTAAACGGTCGGCA 58.598 50.000 15.18 3.11 46.14 5.69
2338 6343 1.147824 CTCCTGATCATTGGCCGCT 59.852 57.895 0.00 0.00 0.00 5.52
2374 6380 1.421485 CTCGTTGGCTCGATGTTGC 59.579 57.895 5.93 0.00 39.12 4.17
2384 6390 2.543653 GCTCGATGTTGCCAAAGTGTTT 60.544 45.455 0.00 0.00 0.00 2.83
2428 6434 2.046700 GGAATCGACGGTTGGCCA 60.047 61.111 0.00 0.00 34.09 5.36
2446 6452 2.681778 CCACCTCTGCCTCCGAGT 60.682 66.667 0.00 0.00 0.00 4.18
2476 6482 2.268167 GAGGATGGCTTGCTGCTCCT 62.268 60.000 5.65 5.65 45.52 3.69
2506 6512 1.619654 CACTTGGGCCATCTCAAACA 58.380 50.000 7.26 0.00 0.00 2.83
2507 6513 2.173519 CACTTGGGCCATCTCAAACAT 58.826 47.619 7.26 0.00 0.00 2.71
2508 6514 2.564062 CACTTGGGCCATCTCAAACATT 59.436 45.455 7.26 0.00 0.00 2.71
2517 6523 1.522668 TCTCAAACATTGTGAGGGCG 58.477 50.000 4.89 0.00 42.37 6.13
2519 6525 1.608590 CTCAAACATTGTGAGGGCGTT 59.391 47.619 0.00 0.00 39.10 4.84
2536 6542 2.051518 TTGCCCATGCCGAATCCAC 61.052 57.895 0.00 0.00 36.33 4.02
2542 6548 4.776322 TGCCGAATCCACCAGCCG 62.776 66.667 0.00 0.00 0.00 5.52
2573 6579 4.332543 TTCCTCCCCTGGCTCCGT 62.333 66.667 0.00 0.00 0.00 4.69
2607 6613 0.723414 CGTTCGATGCTTGCTCATGT 59.277 50.000 0.00 0.00 0.00 3.21
2614 6620 1.159285 TGCTTGCTCATGTTCCTTCG 58.841 50.000 0.00 0.00 0.00 3.79
2620 6626 1.137086 GCTCATGTTCCTTCGCCTCTA 59.863 52.381 0.00 0.00 0.00 2.43
2696 6725 0.249031 CGGAGCGAGCATCACATACA 60.249 55.000 0.00 0.00 33.17 2.29
2714 6743 1.347707 ACATGGTGATCTGTTGTCGGT 59.652 47.619 0.00 0.00 0.00 4.69
2722 6751 1.044611 TCTGTTGTCGGTCCATGACA 58.955 50.000 0.00 0.00 44.17 3.58
2732 6761 1.641577 GTCCATGACAACTAGCGGAC 58.358 55.000 0.00 0.00 36.46 4.79
2734 6763 0.172578 CCATGACAACTAGCGGACGA 59.827 55.000 0.00 0.00 0.00 4.20
2755 6784 4.934144 GCTCGAGCGAATTGAACG 57.066 55.556 23.61 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.067180 AGGAGAAGAACACGTACGAAACA 59.933 43.478 24.41 0.00 0.00 2.83
2 3 3.996150 AGGAGAAGAACACGTACGAAA 57.004 42.857 24.41 0.00 0.00 3.46
4 5 3.567164 AGAAAGGAGAAGAACACGTACGA 59.433 43.478 24.41 0.00 0.00 3.43
5 6 3.898529 AGAAAGGAGAAGAACACGTACG 58.101 45.455 15.01 15.01 0.00 3.67
6 7 8.457261 TCTAATAGAAAGGAGAAGAACACGTAC 58.543 37.037 0.00 0.00 0.00 3.67
7 8 8.571461 TCTAATAGAAAGGAGAAGAACACGTA 57.429 34.615 0.00 0.00 0.00 3.57
8 9 7.363094 CCTCTAATAGAAAGGAGAAGAACACGT 60.363 40.741 0.00 0.00 31.44 4.49
9 10 6.975772 CCTCTAATAGAAAGGAGAAGAACACG 59.024 42.308 0.00 0.00 31.44 4.49
10 11 7.842982 ACCTCTAATAGAAAGGAGAAGAACAC 58.157 38.462 2.97 0.00 34.16 3.32
11 12 7.896496 AGACCTCTAATAGAAAGGAGAAGAACA 59.104 37.037 2.97 0.00 34.16 3.18
12 13 8.301252 AGACCTCTAATAGAAAGGAGAAGAAC 57.699 38.462 2.97 0.00 34.16 3.01
13 14 8.754080 CAAGACCTCTAATAGAAAGGAGAAGAA 58.246 37.037 2.97 0.00 34.16 2.52
14 15 7.147811 GCAAGACCTCTAATAGAAAGGAGAAGA 60.148 40.741 2.97 0.00 34.16 2.87
15 16 6.983890 GCAAGACCTCTAATAGAAAGGAGAAG 59.016 42.308 2.97 0.00 34.16 2.85
16 17 6.670027 AGCAAGACCTCTAATAGAAAGGAGAA 59.330 38.462 2.97 0.00 34.16 2.87
17 18 6.198639 AGCAAGACCTCTAATAGAAAGGAGA 58.801 40.000 2.97 0.00 34.16 3.71
18 19 6.478512 AGCAAGACCTCTAATAGAAAGGAG 57.521 41.667 2.97 0.00 34.16 3.69
19 20 6.895756 TGTAGCAAGACCTCTAATAGAAAGGA 59.104 38.462 2.97 0.00 34.16 3.36
20 21 7.113658 TGTAGCAAGACCTCTAATAGAAAGG 57.886 40.000 0.00 0.00 36.21 3.11
21 22 7.777095 ACTGTAGCAAGACCTCTAATAGAAAG 58.223 38.462 0.00 0.00 0.00 2.62
22 23 7.719871 ACTGTAGCAAGACCTCTAATAGAAA 57.280 36.000 0.00 0.00 0.00 2.52
23 24 7.147880 GGAACTGTAGCAAGACCTCTAATAGAA 60.148 40.741 0.00 0.00 0.00 2.10
24 25 6.321690 GGAACTGTAGCAAGACCTCTAATAGA 59.678 42.308 0.00 0.00 0.00 1.98
25 26 6.322712 AGGAACTGTAGCAAGACCTCTAATAG 59.677 42.308 0.00 0.00 37.18 1.73
26 27 6.195700 AGGAACTGTAGCAAGACCTCTAATA 58.804 40.000 0.00 0.00 37.18 0.98
27 28 5.026790 AGGAACTGTAGCAAGACCTCTAAT 58.973 41.667 0.00 0.00 37.18 1.73
28 29 4.417437 AGGAACTGTAGCAAGACCTCTAA 58.583 43.478 0.00 0.00 37.18 2.10
29 30 4.048970 AGGAACTGTAGCAAGACCTCTA 57.951 45.455 0.00 0.00 37.18 2.43
30 31 2.896039 AGGAACTGTAGCAAGACCTCT 58.104 47.619 0.00 0.00 37.18 3.69
31 32 3.686916 AAGGAACTGTAGCAAGACCTC 57.313 47.619 0.00 0.00 40.86 3.85
32 33 5.485708 AGAATAAGGAACTGTAGCAAGACCT 59.514 40.000 0.00 0.00 40.86 3.85
33 34 5.735766 AGAATAAGGAACTGTAGCAAGACC 58.264 41.667 0.00 0.00 40.86 3.85
34 35 7.548967 ACTAGAATAAGGAACTGTAGCAAGAC 58.451 38.462 0.00 0.00 40.86 3.01
35 36 7.719871 ACTAGAATAAGGAACTGTAGCAAGA 57.280 36.000 0.00 0.00 40.86 3.02
38 39 9.817809 CAAATACTAGAATAAGGAACTGTAGCA 57.182 33.333 0.00 0.00 40.86 3.49
39 40 8.766151 GCAAATACTAGAATAAGGAACTGTAGC 58.234 37.037 0.00 0.00 40.86 3.58
40 41 9.262358 GGCAAATACTAGAATAAGGAACTGTAG 57.738 37.037 0.00 0.00 40.86 2.74
41 42 8.208903 GGGCAAATACTAGAATAAGGAACTGTA 58.791 37.037 0.00 0.00 40.86 2.74
42 43 7.054751 GGGCAAATACTAGAATAAGGAACTGT 58.945 38.462 0.00 0.00 40.86 3.55
43 44 7.283329 AGGGCAAATACTAGAATAAGGAACTG 58.717 38.462 0.00 0.00 40.86 3.16
44 45 8.652290 CTAGGGCAAATACTAGAATAAGGAACT 58.348 37.037 0.00 0.00 39.03 3.01
45 46 8.648693 TCTAGGGCAAATACTAGAATAAGGAAC 58.351 37.037 0.00 0.00 41.84 3.62
46 47 8.792830 TCTAGGGCAAATACTAGAATAAGGAA 57.207 34.615 0.00 0.00 41.84 3.36
47 48 8.974292 ATCTAGGGCAAATACTAGAATAAGGA 57.026 34.615 0.00 0.00 46.12 3.36
56 57 9.824216 AGTCTAACATATCTAGGGCAAATACTA 57.176 33.333 0.00 0.00 0.00 1.82
57 58 8.728596 AGTCTAACATATCTAGGGCAAATACT 57.271 34.615 0.00 0.00 0.00 2.12
58 59 8.808092 AGAGTCTAACATATCTAGGGCAAATAC 58.192 37.037 0.00 0.00 0.00 1.89
59 60 8.958060 AGAGTCTAACATATCTAGGGCAAATA 57.042 34.615 0.00 0.00 0.00 1.40
60 61 7.863901 AGAGTCTAACATATCTAGGGCAAAT 57.136 36.000 0.00 0.00 0.00 2.32
61 62 8.958060 ATAGAGTCTAACATATCTAGGGCAAA 57.042 34.615 3.45 0.00 0.00 3.68
62 63 8.958060 AATAGAGTCTAACATATCTAGGGCAA 57.042 34.615 3.45 0.00 0.00 4.52
63 64 8.958060 AAATAGAGTCTAACATATCTAGGGCA 57.042 34.615 3.45 0.00 0.00 5.36
64 65 9.026121 TGAAATAGAGTCTAACATATCTAGGGC 57.974 37.037 3.45 0.00 0.00 5.19
78 79 8.997323 GCAAGTTGCATATATGAAATAGAGTCT 58.003 33.333 22.90 0.00 44.26 3.24
96 97 3.265791 AGCAGACAGTATAGCAAGTTGC 58.734 45.455 20.44 20.44 45.46 4.17
97 98 5.869753 AAAGCAGACAGTATAGCAAGTTG 57.130 39.130 0.00 0.00 0.00 3.16
98 99 6.936279 TCTAAAGCAGACAGTATAGCAAGTT 58.064 36.000 0.00 0.00 0.00 2.66
99 100 6.531503 TCTAAAGCAGACAGTATAGCAAGT 57.468 37.500 0.00 0.00 0.00 3.16
100 101 9.138062 CATATCTAAAGCAGACAGTATAGCAAG 57.862 37.037 0.00 0.00 35.62 4.01
101 102 8.642432 ACATATCTAAAGCAGACAGTATAGCAA 58.358 33.333 0.00 0.00 35.62 3.91
102 103 8.183104 ACATATCTAAAGCAGACAGTATAGCA 57.817 34.615 0.00 0.00 35.62 3.49
103 104 9.482627 AAACATATCTAAAGCAGACAGTATAGC 57.517 33.333 0.00 0.00 35.62 2.97
146 147 9.793259 ACAAAGAGAAGGTAAACAATATCTTCA 57.207 29.630 10.23 0.00 37.04 3.02
148 149 9.793259 TGACAAAGAGAAGGTAAACAATATCTT 57.207 29.630 0.00 0.00 0.00 2.40
149 150 9.793259 TTGACAAAGAGAAGGTAAACAATATCT 57.207 29.630 0.00 0.00 0.00 1.98
153 154 8.076178 CGATTTGACAAAGAGAAGGTAAACAAT 58.924 33.333 6.77 0.00 0.00 2.71
154 155 7.414436 CGATTTGACAAAGAGAAGGTAAACAA 58.586 34.615 6.77 0.00 0.00 2.83
155 156 6.512741 GCGATTTGACAAAGAGAAGGTAAACA 60.513 38.462 6.77 0.00 0.00 2.83
156 157 5.851703 GCGATTTGACAAAGAGAAGGTAAAC 59.148 40.000 6.77 0.00 0.00 2.01
157 158 5.529430 TGCGATTTGACAAAGAGAAGGTAAA 59.471 36.000 6.77 0.00 0.00 2.01
158 159 5.060506 TGCGATTTGACAAAGAGAAGGTAA 58.939 37.500 6.77 0.00 0.00 2.85
159 160 4.637276 TGCGATTTGACAAAGAGAAGGTA 58.363 39.130 6.77 0.00 0.00 3.08
160 161 3.476552 TGCGATTTGACAAAGAGAAGGT 58.523 40.909 6.77 0.00 0.00 3.50
161 162 4.691860 ATGCGATTTGACAAAGAGAAGG 57.308 40.909 6.77 0.00 0.00 3.46
162 163 5.064452 AGCTATGCGATTTGACAAAGAGAAG 59.936 40.000 6.77 1.12 0.00 2.85
163 164 4.937620 AGCTATGCGATTTGACAAAGAGAA 59.062 37.500 6.77 0.00 0.00 2.87
164 165 4.507710 AGCTATGCGATTTGACAAAGAGA 58.492 39.130 6.77 0.00 0.00 3.10
165 166 4.871993 AGCTATGCGATTTGACAAAGAG 57.128 40.909 6.77 4.17 0.00 2.85
166 167 4.455533 ACAAGCTATGCGATTTGACAAAGA 59.544 37.500 6.77 0.00 0.00 2.52
167 168 4.726416 ACAAGCTATGCGATTTGACAAAG 58.274 39.130 6.77 0.00 0.00 2.77
168 169 4.764679 ACAAGCTATGCGATTTGACAAA 57.235 36.364 2.48 2.48 0.00 2.83
169 170 4.764679 AACAAGCTATGCGATTTGACAA 57.235 36.364 0.00 0.00 0.00 3.18
170 171 4.764679 AAACAAGCTATGCGATTTGACA 57.235 36.364 0.00 0.00 0.00 3.58
171 172 6.966632 TGATAAAACAAGCTATGCGATTTGAC 59.033 34.615 0.00 0.00 0.00 3.18
172 173 7.082700 TGATAAAACAAGCTATGCGATTTGA 57.917 32.000 0.00 0.00 0.00 2.69
173 174 7.919313 ATGATAAAACAAGCTATGCGATTTG 57.081 32.000 0.00 0.00 0.00 2.32
174 175 9.450807 GTAATGATAAAACAAGCTATGCGATTT 57.549 29.630 0.00 0.00 0.00 2.17
175 176 8.840321 AGTAATGATAAAACAAGCTATGCGATT 58.160 29.630 0.00 0.00 0.00 3.34
176 177 8.383318 AGTAATGATAAAACAAGCTATGCGAT 57.617 30.769 0.00 0.00 0.00 4.58
177 178 7.786178 AGTAATGATAAAACAAGCTATGCGA 57.214 32.000 0.00 0.00 0.00 5.10
240 241 8.784043 GGAAATATGAGCAATTTACCGAATAGT 58.216 33.333 0.00 0.00 0.00 2.12
241 242 8.783093 TGGAAATATGAGCAATTTACCGAATAG 58.217 33.333 0.00 0.00 0.00 1.73
242 243 8.684386 TGGAAATATGAGCAATTTACCGAATA 57.316 30.769 0.00 0.00 0.00 1.75
243 244 7.581213 TGGAAATATGAGCAATTTACCGAAT 57.419 32.000 0.00 0.00 0.00 3.34
244 245 7.094162 TGTTGGAAATATGAGCAATTTACCGAA 60.094 33.333 0.00 0.00 0.00 4.30
245 246 6.375736 TGTTGGAAATATGAGCAATTTACCGA 59.624 34.615 0.00 0.00 0.00 4.69
246 247 6.559810 TGTTGGAAATATGAGCAATTTACCG 58.440 36.000 0.00 0.00 0.00 4.02
247 248 7.771183 TCTGTTGGAAATATGAGCAATTTACC 58.229 34.615 0.00 0.00 0.00 2.85
248 249 9.294030 CTTCTGTTGGAAATATGAGCAATTTAC 57.706 33.333 0.00 0.00 33.07 2.01
249 250 7.975616 GCTTCTGTTGGAAATATGAGCAATTTA 59.024 33.333 0.00 0.00 33.07 1.40
250 251 6.815142 GCTTCTGTTGGAAATATGAGCAATTT 59.185 34.615 0.00 0.00 33.07 1.82
251 252 6.071221 TGCTTCTGTTGGAAATATGAGCAATT 60.071 34.615 0.00 0.00 33.07 2.32
252 253 5.419788 TGCTTCTGTTGGAAATATGAGCAAT 59.580 36.000 0.00 0.00 33.07 3.56
253 254 4.766373 TGCTTCTGTTGGAAATATGAGCAA 59.234 37.500 0.00 0.00 33.07 3.91
254 255 4.334552 TGCTTCTGTTGGAAATATGAGCA 58.665 39.130 0.00 0.00 33.07 4.26
255 256 4.970662 TGCTTCTGTTGGAAATATGAGC 57.029 40.909 0.00 0.00 33.07 4.26
256 257 6.206243 CCCTATGCTTCTGTTGGAAATATGAG 59.794 42.308 0.00 0.00 33.07 2.90
257 258 6.064060 CCCTATGCTTCTGTTGGAAATATGA 58.936 40.000 0.00 0.00 33.07 2.15
258 259 5.242393 CCCCTATGCTTCTGTTGGAAATATG 59.758 44.000 0.00 0.00 33.07 1.78
259 260 5.388654 CCCCTATGCTTCTGTTGGAAATAT 58.611 41.667 0.00 0.00 33.07 1.28
260 261 4.792068 CCCCTATGCTTCTGTTGGAAATA 58.208 43.478 0.00 0.00 33.07 1.40
261 262 3.635591 CCCCTATGCTTCTGTTGGAAAT 58.364 45.455 0.00 0.00 33.07 2.17
262 263 2.883888 GCCCCTATGCTTCTGTTGGAAA 60.884 50.000 0.00 0.00 33.07 3.13
263 264 1.340991 GCCCCTATGCTTCTGTTGGAA 60.341 52.381 0.00 0.00 0.00 3.53
264 265 0.255890 GCCCCTATGCTTCTGTTGGA 59.744 55.000 0.00 0.00 0.00 3.53
265 266 1.097547 CGCCCCTATGCTTCTGTTGG 61.098 60.000 0.00 0.00 0.00 3.77
266 267 0.107703 TCGCCCCTATGCTTCTGTTG 60.108 55.000 0.00 0.00 0.00 3.33
267 268 0.618458 TTCGCCCCTATGCTTCTGTT 59.382 50.000 0.00 0.00 0.00 3.16
268 269 0.179000 CTTCGCCCCTATGCTTCTGT 59.821 55.000 0.00 0.00 0.00 3.41
269 270 0.465705 TCTTCGCCCCTATGCTTCTG 59.534 55.000 0.00 0.00 0.00 3.02
323 324 1.202222 GCTCATGCCAATCCGTCTTTG 60.202 52.381 0.00 0.00 0.00 2.77
369 370 5.971202 CACCTCACTTTGTAAACACATCAAC 59.029 40.000 0.00 0.00 0.00 3.18
379 394 6.600032 TCAAAAGCTTACACCTCACTTTGTAA 59.400 34.615 0.00 0.00 36.15 2.41
405 420 4.456535 TGTAAGCTTTTGAGTGTAAGCCA 58.543 39.130 3.20 0.00 46.10 4.75
483 499 5.676079 GCCGATGCTTTCTACTTGCATTTTA 60.676 40.000 0.00 0.00 45.90 1.52
500 516 2.895372 CGTAGGGGTTGCCGATGC 60.895 66.667 0.00 0.00 38.26 3.91
503 519 2.601067 TGTCGTAGGGGTTGCCGA 60.601 61.111 0.00 0.00 0.00 5.54
615 1069 7.414222 AACTCTCGGATGGTAAACTAATGTA 57.586 36.000 0.00 0.00 0.00 2.29
668 1122 1.875813 CGCTCTTCATCGCGCTTCT 60.876 57.895 5.56 0.00 43.01 2.85
669 1123 2.617762 CGCTCTTCATCGCGCTTC 59.382 61.111 5.56 0.00 43.01 3.86
678 1132 2.845752 ATTAACCGCGCCGCTCTTCA 62.846 55.000 7.78 0.00 0.00 3.02
679 1133 2.171725 ATTAACCGCGCCGCTCTTC 61.172 57.895 7.78 0.00 0.00 2.87
680 1134 2.125269 ATTAACCGCGCCGCTCTT 60.125 55.556 7.78 0.00 0.00 2.85
681 1135 2.890474 CATTAACCGCGCCGCTCT 60.890 61.111 7.78 0.00 0.00 4.09
682 1136 3.937062 CCATTAACCGCGCCGCTC 61.937 66.667 7.78 0.00 0.00 5.03
684 1138 3.276846 ATCCATTAACCGCGCCGC 61.277 61.111 0.00 0.00 0.00 6.53
685 1139 2.177580 ACATCCATTAACCGCGCCG 61.178 57.895 0.00 0.00 0.00 6.46
690 1181 3.242413 CGCTTCTTCACATCCATTAACCG 60.242 47.826 0.00 0.00 0.00 4.44
723 1214 2.409975 CATACGACGAAACACCAAGGT 58.590 47.619 0.00 0.00 0.00 3.50
851 1345 2.802740 TACAGCTCTGCACTGCGTCG 62.803 60.000 2.87 0.00 38.79 5.12
861 1355 2.354821 GCGGGGTTTTTATACAGCTCTG 59.645 50.000 0.00 0.00 0.00 3.35
1162 1659 0.753848 GAAGAGAGAGAGGGGTCGGG 60.754 65.000 0.00 0.00 0.00 5.14
1299 1811 2.264480 CGCACCCCGATGAAGTCA 59.736 61.111 0.00 0.00 40.02 3.41
1458 1970 3.056328 GGGAAGTTGAGCACGGCC 61.056 66.667 0.00 0.00 0.00 6.13
1812 2333 5.464722 CAGTGAGAAGTAGCATGCGATTAAT 59.535 40.000 13.01 0.00 0.00 1.40
1944 5949 6.937436 AACATTTCTTAAACTCACGAACCT 57.063 33.333 0.00 0.00 0.00 3.50
2007 6012 6.437477 AGTTTTCCTTCAGTTGTTTTCTCCTT 59.563 34.615 0.00 0.00 0.00 3.36
2008 6013 5.952347 AGTTTTCCTTCAGTTGTTTTCTCCT 59.048 36.000 0.00 0.00 0.00 3.69
2009 6014 6.208988 AGTTTTCCTTCAGTTGTTTTCTCC 57.791 37.500 0.00 0.00 0.00 3.71
2012 6017 7.768240 TCCTTAGTTTTCCTTCAGTTGTTTTC 58.232 34.615 0.00 0.00 0.00 2.29
2017 6022 6.978659 GGTTTTCCTTAGTTTTCCTTCAGTTG 59.021 38.462 0.00 0.00 36.94 3.16
2023 6028 3.319972 GCCGGTTTTCCTTAGTTTTCCTT 59.680 43.478 1.90 0.00 37.95 3.36
2032 6037 0.822532 TTTGCCGCCGGTTTTCCTTA 60.823 50.000 4.45 0.00 37.95 2.69
2034 6039 1.468506 AATTTGCCGCCGGTTTTCCT 61.469 50.000 4.45 0.00 37.95 3.36
2096 6101 1.071228 TCATATGCGGCTCAAGATGCT 59.929 47.619 0.00 0.00 0.00 3.79
2104 6109 3.138304 TGGTATTTGTCATATGCGGCTC 58.862 45.455 0.00 0.00 0.00 4.70
2122 6127 1.742411 CGCAAACGTATCAGGGATGGT 60.742 52.381 0.00 0.00 33.53 3.55
2123 6128 0.937304 CGCAAACGTATCAGGGATGG 59.063 55.000 0.00 0.00 33.53 3.51
2143 6148 2.124151 GGGTGATCGGGCTGCATT 60.124 61.111 0.50 0.00 0.00 3.56
2214 6219 4.539870 CTTTTGAGTTGCATGGTGTAGTG 58.460 43.478 0.00 0.00 0.00 2.74
2374 6380 0.248458 AAGCGCGACAAACACTTTGG 60.248 50.000 12.10 0.00 44.81 3.28
2428 6434 2.681778 CTCGGAGGCAGAGGTGGT 60.682 66.667 0.00 0.00 32.38 4.16
2446 6452 1.040646 GCCATCCTCGACTCCATACA 58.959 55.000 0.00 0.00 0.00 2.29
2476 6482 3.003173 CCAAGTGGAGGAGGCGGA 61.003 66.667 0.00 0.00 37.39 5.54
2517 6523 2.051518 TGGATTCGGCATGGGCAAC 61.052 57.895 0.00 0.00 43.71 4.17
2519 6525 2.440065 GTGGATTCGGCATGGGCA 60.440 61.111 0.00 0.00 43.71 5.36
2536 6542 3.473647 TGAGGCTGATCCGGCTGG 61.474 66.667 17.96 4.71 40.21 4.85
2542 6548 0.467804 GAGGAAGGTGAGGCTGATCC 59.532 60.000 0.00 0.00 0.00 3.36
2573 6579 3.529341 AACGCGGACATGACAGCCA 62.529 57.895 12.47 0.00 0.00 4.75
2607 6613 2.645802 GACTCTCTAGAGGCGAAGGAA 58.354 52.381 19.67 0.00 46.13 3.36
2620 6626 1.685421 GCCTGCCTCTGGACTCTCT 60.685 63.158 0.00 0.00 0.00 3.10
2689 6718 4.033243 CGACAACAGATCACCATGTATGTG 59.967 45.833 0.00 0.00 0.00 3.21
2696 6725 1.066143 GGACCGACAACAGATCACCAT 60.066 52.381 0.00 0.00 0.00 3.55
2714 6743 0.172578 CGTCCGCTAGTTGTCATGGA 59.827 55.000 0.00 0.00 0.00 3.41
2722 6751 0.382515 GAGCTCATCGTCCGCTAGTT 59.617 55.000 9.40 0.00 33.47 2.24
2734 6763 1.929836 GTTCAATTCGCTCGAGCTCAT 59.070 47.619 32.88 21.68 39.32 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.