Multiple sequence alignment - TraesCS2A01G463100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G463100 chr2A 100.000 3235 0 0 1 3235 709043770 709040536 0.000000e+00 5975.0
1 TraesCS2A01G463100 chr2A 100.000 215 0 0 3469 3683 709040302 709040088 7.410000e-107 398.0
2 TraesCS2A01G463100 chr2A 98.214 168 3 0 3516 3683 123569646 123569813 1.000000e-75 294.0
3 TraesCS2A01G463100 chr2A 98.214 168 3 0 3516 3683 329112601 329112768 1.000000e-75 294.0
4 TraesCS2A01G463100 chr2A 97.619 168 4 0 3516 3683 440476575 440476742 4.650000e-74 289.0
5 TraesCS2A01G463100 chr2A 95.556 45 1 1 511 554 333764166 333764122 1.830000e-08 71.3
6 TraesCS2A01G463100 chr2A 88.462 52 5 1 703 753 393196634 393196583 1.100000e-05 62.1
7 TraesCS2A01G463100 chr2A 97.059 34 1 0 719 752 690525473 690525506 1.430000e-04 58.4
8 TraesCS2A01G463100 chr2B 95.962 2501 75 15 565 3040 682041550 682039051 0.000000e+00 4036.0
9 TraesCS2A01G463100 chr2B 91.346 520 38 7 1 518 682042063 682041549 0.000000e+00 704.0
10 TraesCS2A01G463100 chr2B 88.462 52 5 1 703 753 393999881 393999932 1.100000e-05 62.1
11 TraesCS2A01G463100 chr2D 95.555 2497 74 15 757 3233 569256749 569254270 0.000000e+00 3962.0
12 TraesCS2A01G463100 chr2D 92.115 520 35 5 1 518 569257489 569256974 0.000000e+00 728.0
13 TraesCS2A01G463100 chr2D 98.214 168 3 0 3516 3683 31474469 31474636 1.000000e-75 294.0
14 TraesCS2A01G463100 chr2D 95.628 183 7 1 565 746 569256975 569256793 3.600000e-75 292.0
15 TraesCS2A01G463100 chr2D 97.619 168 4 0 3516 3683 54130435 54130602 4.650000e-74 289.0
16 TraesCS2A01G463100 chr2D 97.619 168 4 0 3516 3683 429837476 429837643 4.650000e-74 289.0
17 TraesCS2A01G463100 chr2D 90.000 50 4 1 517 566 233486505 233486553 3.070000e-06 63.9
18 TraesCS2A01G463100 chr1B 98.214 168 3 0 3516 3683 497443650 497443817 1.000000e-75 294.0
19 TraesCS2A01G463100 chr1B 86.885 61 3 3 696 753 151463373 151463431 3.070000e-06 63.9
20 TraesCS2A01G463100 chr4A 97.619 168 4 0 3516 3683 313643334 313643501 4.650000e-74 289.0
21 TraesCS2A01G463100 chr4A 95.122 41 1 1 716 755 629422667 629422627 3.070000e-06 63.9
22 TraesCS2A01G463100 chr1D 97.619 168 4 0 3516 3683 326240078 326240245 4.650000e-74 289.0
23 TraesCS2A01G463100 chr4D 95.349 43 2 0 511 553 312566481 312566523 6.600000e-08 69.4
24 TraesCS2A01G463100 chr7B 95.349 43 1 1 512 554 13869200 13869159 2.370000e-07 67.6
25 TraesCS2A01G463100 chr6D 95.349 43 0 2 513 554 67531390 67531431 2.370000e-07 67.6
26 TraesCS2A01G463100 chr6D 97.436 39 1 0 516 554 287017168 287017130 2.370000e-07 67.6
27 TraesCS2A01G463100 chr6D 88.235 51 4 2 703 753 53147688 53147736 3.970000e-05 60.2
28 TraesCS2A01G463100 chr6A 95.122 41 2 0 514 554 470102350 470102390 8.540000e-07 65.8
29 TraesCS2A01G463100 chr5A 95.122 41 2 0 718 758 447372152 447372112 8.540000e-07 65.8
30 TraesCS2A01G463100 chr3D 93.333 45 2 1 511 554 455100666 455100622 8.540000e-07 65.8
31 TraesCS2A01G463100 chr3B 97.368 38 1 0 718 755 739846794 739846831 8.540000e-07 65.8
32 TraesCS2A01G463100 chr1A 93.333 45 0 3 511 554 589498368 589498410 3.070000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G463100 chr2A 709040088 709043770 3682 True 3186.500000 5975 100.000000 1 3683 2 chr2A.!!$R3 3682
1 TraesCS2A01G463100 chr2B 682039051 682042063 3012 True 2370.000000 4036 93.654000 1 3040 2 chr2B.!!$R1 3039
2 TraesCS2A01G463100 chr2D 569254270 569257489 3219 True 1660.666667 3962 94.432667 1 3233 3 chr2D.!!$R1 3232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 283 0.040336 TCGTCGGATGCTTATCGCTC 60.040 55.0 0.00 0.0 40.11 5.03 F
375 376 1.019673 CCAATCTCAGATGCGGGTTG 58.980 55.0 0.00 0.0 0.00 3.77 F
1234 1270 0.244994 AACTGCCTCTGAGTGTAGCG 59.755 55.0 3.66 0.2 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 1173 1.226746 GACTTGACTCCGGGTTGTTG 58.773 55.0 0.00 0.00 0.00 3.33 R
2349 2385 1.035932 GCTGTGGAGGCTCTACGGTA 61.036 60.0 32.10 13.93 36.70 4.02 R
3157 3210 0.536006 GACAGGCTGACACCAAAGCT 60.536 55.0 23.66 0.00 39.46 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.598065 CCGCAGTTTTCCTTCCCAAG 59.402 55.000 0.00 0.00 0.00 3.61
70 71 2.095053 GGAGAAAGTCTGCAGAAATCGC 59.905 50.000 20.19 17.15 34.73 4.58
131 132 6.436843 AATTCCGTCAGCTAATTTTACCAG 57.563 37.500 0.00 0.00 0.00 4.00
132 133 4.546829 TCCGTCAGCTAATTTTACCAGT 57.453 40.909 0.00 0.00 0.00 4.00
198 199 4.430908 CAGTAATTTGTCTACGTCTCCCC 58.569 47.826 0.00 0.00 0.00 4.81
224 225 1.212751 GCGGCTGTGGATTTGGTTC 59.787 57.895 0.00 0.00 0.00 3.62
226 227 0.893270 CGGCTGTGGATTTGGTTCCA 60.893 55.000 0.00 0.00 43.56 3.53
243 244 5.184287 TGGTTCCAAATTAGGGTTTCGAATC 59.816 40.000 0.00 0.00 0.00 2.52
251 252 3.721087 AGGGTTTCGAATCAGGATGTT 57.279 42.857 0.00 0.00 37.40 2.71
273 274 0.667792 GGCCTAGAATCGTCGGATGC 60.668 60.000 0.00 0.00 31.83 3.91
274 275 0.315568 GCCTAGAATCGTCGGATGCT 59.684 55.000 0.00 0.00 41.64 3.79
276 277 2.030185 GCCTAGAATCGTCGGATGCTTA 60.030 50.000 0.00 0.00 39.41 3.09
277 278 3.367498 GCCTAGAATCGTCGGATGCTTAT 60.367 47.826 0.00 0.00 39.41 1.73
279 280 2.935042 AGAATCGTCGGATGCTTATCG 58.065 47.619 0.00 0.00 34.70 2.92
281 282 0.598562 ATCGTCGGATGCTTATCGCT 59.401 50.000 0.00 0.00 40.11 4.93
282 283 0.040336 TCGTCGGATGCTTATCGCTC 60.040 55.000 0.00 0.00 40.11 5.03
306 307 3.469899 TTCGATTCGATGCTTGGTTTG 57.530 42.857 9.96 0.00 35.23 2.93
311 312 2.125952 GATGCTTGGTTTGCCGGC 60.126 61.111 22.73 22.73 37.67 6.13
313 314 2.824071 GATGCTTGGTTTGCCGGCTG 62.824 60.000 29.70 9.67 37.14 4.85
331 332 2.872245 GCTGCGTATGCTTAATTGGAGA 59.128 45.455 8.69 0.00 43.34 3.71
334 335 5.506317 GCTGCGTATGCTTAATTGGAGAAAT 60.506 40.000 8.69 0.00 43.34 2.17
375 376 1.019673 CCAATCTCAGATGCGGGTTG 58.980 55.000 0.00 0.00 0.00 3.77
450 451 4.798387 GCAAATTTACAGCTTTATCACGGG 59.202 41.667 0.00 0.00 0.00 5.28
480 481 2.879026 ACAGGAAAAAGTCGCCTCTTTC 59.121 45.455 2.07 0.00 36.75 2.62
482 483 3.187432 CAGGAAAAAGTCGCCTCTTTCTC 59.813 47.826 0.00 0.00 36.75 2.87
510 511 4.067192 GCTGAGGATTGCAATTTTGGTTT 58.933 39.130 14.33 0.00 0.00 3.27
518 519 7.226523 AGGATTGCAATTTTGGTTTGAAACTAC 59.773 33.333 14.33 0.00 0.00 2.73
519 520 7.226523 GGATTGCAATTTTGGTTTGAAACTACT 59.773 33.333 14.33 0.00 0.00 2.57
520 521 7.532682 TTGCAATTTTGGTTTGAAACTACTC 57.467 32.000 8.09 0.00 0.00 2.59
521 522 6.045955 TGCAATTTTGGTTTGAAACTACTCC 58.954 36.000 8.09 0.00 0.00 3.85
522 523 5.465390 GCAATTTTGGTTTGAAACTACTCCC 59.535 40.000 8.09 0.00 0.00 4.30
523 524 6.578023 CAATTTTGGTTTGAAACTACTCCCA 58.422 36.000 8.09 0.00 0.00 4.37
524 525 6.994421 ATTTTGGTTTGAAACTACTCCCAT 57.006 33.333 8.09 0.00 0.00 4.00
525 526 6.399639 TTTTGGTTTGAAACTACTCCCATC 57.600 37.500 8.09 0.00 0.00 3.51
526 527 3.670625 TGGTTTGAAACTACTCCCATCG 58.329 45.455 8.09 0.00 0.00 3.84
527 528 3.071892 TGGTTTGAAACTACTCCCATCGT 59.928 43.478 8.09 0.00 0.00 3.73
528 529 3.683340 GGTTTGAAACTACTCCCATCGTC 59.317 47.826 8.09 0.00 0.00 4.20
529 530 3.604875 TTGAAACTACTCCCATCGTCC 57.395 47.619 0.00 0.00 0.00 4.79
530 531 1.829222 TGAAACTACTCCCATCGTCCC 59.171 52.381 0.00 0.00 0.00 4.46
531 532 1.829222 GAAACTACTCCCATCGTCCCA 59.171 52.381 0.00 0.00 0.00 4.37
532 533 2.176247 AACTACTCCCATCGTCCCAT 57.824 50.000 0.00 0.00 0.00 4.00
533 534 3.323774 AACTACTCCCATCGTCCCATA 57.676 47.619 0.00 0.00 0.00 2.74
534 535 3.323774 ACTACTCCCATCGTCCCATAA 57.676 47.619 0.00 0.00 0.00 1.90
535 536 3.858135 ACTACTCCCATCGTCCCATAAT 58.142 45.455 0.00 0.00 0.00 1.28
536 537 5.006896 ACTACTCCCATCGTCCCATAATA 57.993 43.478 0.00 0.00 0.00 0.98
537 538 5.590818 ACTACTCCCATCGTCCCATAATAT 58.409 41.667 0.00 0.00 0.00 1.28
538 539 6.738635 ACTACTCCCATCGTCCCATAATATA 58.261 40.000 0.00 0.00 0.00 0.86
539 540 7.186972 ACTACTCCCATCGTCCCATAATATAA 58.813 38.462 0.00 0.00 0.00 0.98
540 541 6.546428 ACTCCCATCGTCCCATAATATAAG 57.454 41.667 0.00 0.00 0.00 1.73
541 542 6.261435 ACTCCCATCGTCCCATAATATAAGA 58.739 40.000 0.00 0.00 0.00 2.10
542 543 6.729100 ACTCCCATCGTCCCATAATATAAGAA 59.271 38.462 0.00 0.00 0.00 2.52
543 544 6.942976 TCCCATCGTCCCATAATATAAGAAC 58.057 40.000 0.00 0.00 0.00 3.01
544 545 5.810587 CCCATCGTCCCATAATATAAGAACG 59.189 44.000 0.00 0.00 0.00 3.95
545 546 6.395629 CCATCGTCCCATAATATAAGAACGT 58.604 40.000 0.00 0.00 0.00 3.99
546 547 6.872020 CCATCGTCCCATAATATAAGAACGTT 59.128 38.462 0.00 0.00 0.00 3.99
547 548 7.386848 CCATCGTCCCATAATATAAGAACGTTT 59.613 37.037 0.46 0.00 0.00 3.60
548 549 8.770828 CATCGTCCCATAATATAAGAACGTTTT 58.229 33.333 0.46 0.00 0.00 2.43
549 550 8.721019 TCGTCCCATAATATAAGAACGTTTTT 57.279 30.769 9.22 9.22 0.00 1.94
550 551 8.819974 TCGTCCCATAATATAAGAACGTTTTTC 58.180 33.333 7.42 0.00 0.00 2.29
551 552 8.605746 CGTCCCATAATATAAGAACGTTTTTCA 58.394 33.333 7.42 0.00 0.00 2.69
558 559 7.894376 ATATAAGAACGTTTTTCAAGACGGA 57.106 32.000 7.42 0.00 43.16 4.69
559 560 4.531659 AAGAACGTTTTTCAAGACGGAG 57.468 40.909 0.46 0.00 43.16 4.63
560 561 2.870411 AGAACGTTTTTCAAGACGGAGG 59.130 45.455 0.46 0.00 43.16 4.30
561 562 1.589803 ACGTTTTTCAAGACGGAGGG 58.410 50.000 7.44 0.00 43.16 4.30
562 563 1.139455 ACGTTTTTCAAGACGGAGGGA 59.861 47.619 7.44 0.00 43.16 4.20
563 564 1.798813 CGTTTTTCAAGACGGAGGGAG 59.201 52.381 0.00 0.00 35.74 4.30
652 653 9.405587 GAGAATCTGATTACAAGTATGTAGCTC 57.594 37.037 2.28 0.00 42.72 4.09
669 670 1.871039 GCTCAGTTTACTCGGTTTGCA 59.129 47.619 0.00 0.00 0.00 4.08
694 695 5.710099 TCGCAGATTTAGGTTCCTGATTTTT 59.290 36.000 1.12 0.00 0.00 1.94
785 820 6.943146 TGTTATGTACATTCCCTTTTAGCACA 59.057 34.615 14.77 0.00 0.00 4.57
810 845 4.261447 GGTGCGGTGAACAACTAGATTTTT 60.261 41.667 0.00 0.00 0.00 1.94
830 865 5.593679 TTTTATTCCTCTCGGTGACTAGG 57.406 43.478 0.00 0.00 0.00 3.02
937 973 4.289238 TGCATTGCAGGGATTTGATTTT 57.711 36.364 7.38 0.00 33.32 1.82
991 1027 7.340487 GGGAAGTTCATCACAAGATAGGATTTT 59.660 37.037 5.01 0.00 31.88 1.82
992 1028 8.186821 GGAAGTTCATCACAAGATAGGATTTTG 58.813 37.037 5.01 0.00 31.88 2.44
1049 1085 2.555757 AGTCTTCAGCCAAGCATTGTTC 59.444 45.455 0.00 0.00 46.99 3.18
1094 1130 4.019174 CTCATCCAGGCAAACACCTTAAT 58.981 43.478 0.00 0.00 38.26 1.40
1137 1173 5.904362 AGTGGAATAGCCTCAACAAATTC 57.096 39.130 0.00 0.00 37.63 2.17
1224 1260 2.097825 GGAAATGATGCAACTGCCTCT 58.902 47.619 8.20 0.00 41.18 3.69
1234 1270 0.244994 AACTGCCTCTGAGTGTAGCG 59.755 55.000 3.66 0.20 0.00 4.26
1470 1506 3.123050 GTGGAAAGCATTGTTTGTGGAC 58.877 45.455 0.00 0.00 0.00 4.02
1485 1521 0.536460 TGGACCGGGAGTTTCAAAGC 60.536 55.000 6.32 0.00 0.00 3.51
2021 2057 4.323417 GCATATGTGTGGGATATCGGAAA 58.677 43.478 4.29 0.00 0.00 3.13
2121 2157 2.093921 GCTGTTTACTGGAGGAGAGGAC 60.094 54.545 0.00 0.00 0.00 3.85
2157 2193 6.561166 GCTTGTTCGATGTTTCTGAGATATCG 60.561 42.308 17.33 17.33 41.26 2.92
2322 2358 1.732259 CTAAACTCATCAAAGCGCCGT 59.268 47.619 2.29 0.00 0.00 5.68
2349 2385 3.431415 GGTTAAGCCCTTTGATCCAAGT 58.569 45.455 5.86 0.00 0.00 3.16
2472 2508 1.067495 GTCAGGGTCTGGAACTTCTCG 60.067 57.143 0.00 0.00 31.51 4.04
2640 2676 4.160329 TGAAGGGTGATAAGAGTGTCACT 58.840 43.478 4.81 4.81 43.44 3.41
2805 2841 7.986085 ATATTCAACTTATATCTGGTGCACC 57.014 36.000 29.67 29.67 0.00 5.01
2837 2873 9.563898 CGCATTTGATATGTATGCAATTCTTAT 57.436 29.630 0.00 0.00 43.66 1.73
2860 2897 1.628846 GACCTGGTGTACATTGGGTCT 59.371 52.381 24.21 5.71 39.79 3.85
2934 2972 4.144108 CGTTTTTGTATCGTTCTGTTTGCG 60.144 41.667 0.00 0.00 0.00 4.85
2959 2997 9.672086 CGTTTCTGGTGAAAGAAAAATTACATA 57.328 29.630 1.19 0.00 45.30 2.29
2976 3016 7.750229 ATTACATAACACCATGCAGGAATAG 57.250 36.000 0.00 0.00 41.22 1.73
3002 3042 6.806739 TCGACTTGTGTATTTATCTCAGTGTG 59.193 38.462 0.00 0.00 0.00 3.82
3041 3081 2.041891 TCCCTAGGCTCTAGCTGGATAC 59.958 54.545 2.05 0.00 41.70 2.24
3057 3097 2.945668 GGATACATTTCAGTCTGTGGCC 59.054 50.000 0.00 0.00 0.00 5.36
3058 3098 3.370953 GGATACATTTCAGTCTGTGGCCT 60.371 47.826 3.32 0.00 0.00 5.19
3059 3099 2.664402 ACATTTCAGTCTGTGGCCTT 57.336 45.000 3.32 0.00 0.00 4.35
3060 3100 2.949447 ACATTTCAGTCTGTGGCCTTT 58.051 42.857 3.32 0.00 0.00 3.11
3061 3101 2.624838 ACATTTCAGTCTGTGGCCTTTG 59.375 45.455 3.32 0.00 0.00 2.77
3062 3102 1.032014 TTTCAGTCTGTGGCCTTTGC 58.968 50.000 3.32 0.00 0.00 3.68
3063 3103 0.183492 TTCAGTCTGTGGCCTTTGCT 59.817 50.000 3.32 0.00 37.74 3.91
3064 3104 1.055849 TCAGTCTGTGGCCTTTGCTA 58.944 50.000 3.32 0.00 37.74 3.49
3076 3116 5.964758 TGGCCTTTGCTACAAGAAAATATG 58.035 37.500 3.32 0.00 37.74 1.78
3077 3117 5.480073 TGGCCTTTGCTACAAGAAAATATGT 59.520 36.000 3.32 0.00 37.74 2.29
3078 3118 6.661377 TGGCCTTTGCTACAAGAAAATATGTA 59.339 34.615 3.32 0.00 37.74 2.29
3079 3119 7.341769 TGGCCTTTGCTACAAGAAAATATGTAT 59.658 33.333 3.32 0.00 37.74 2.29
3080 3120 8.197439 GGCCTTTGCTACAAGAAAATATGTATT 58.803 33.333 0.00 0.00 37.74 1.89
3081 3121 9.023967 GCCTTTGCTACAAGAAAATATGTATTG 57.976 33.333 0.00 0.00 32.02 1.90
3086 3126 9.674068 TGCTACAAGAAAATATGTATTGTACCA 57.326 29.630 3.82 2.36 35.77 3.25
3103 3143 6.627395 TGTACCACTTTGTTTTCAGGTATG 57.373 37.500 0.00 0.00 32.28 2.39
3115 3155 8.707796 TGTTTTCAGGTATGGGTTTGTAATTA 57.292 30.769 0.00 0.00 0.00 1.40
3153 3206 4.458989 TGAATCGCCTTTAATGTCAAGCTT 59.541 37.500 0.00 0.00 0.00 3.74
3154 3207 5.048083 TGAATCGCCTTTAATGTCAAGCTTT 60.048 36.000 0.00 0.00 0.00 3.51
3155 3208 6.150307 TGAATCGCCTTTAATGTCAAGCTTTA 59.850 34.615 0.00 0.00 0.00 1.85
3156 3209 6.699575 ATCGCCTTTAATGTCAAGCTTTAT 57.300 33.333 0.00 0.00 0.00 1.40
3157 3210 7.801716 ATCGCCTTTAATGTCAAGCTTTATA 57.198 32.000 0.00 0.00 0.00 0.98
3158 3211 7.246674 TCGCCTTTAATGTCAAGCTTTATAG 57.753 36.000 0.00 0.00 0.00 1.31
3186 3257 1.066303 GTCAGCCTGTCAGGTATCTCG 59.934 57.143 20.24 3.35 37.80 4.04
3199 3270 3.381908 AGGTATCTCGTGGTTGATCACTC 59.618 47.826 0.00 0.00 35.63 3.51
3216 3287 2.203070 CCGTGCTCTATGTGGCCC 60.203 66.667 0.00 0.00 0.00 5.80
3233 3304 2.148768 GCCCTGTAACTAAAACGCTGT 58.851 47.619 0.00 0.00 0.00 4.40
3234 3305 2.095919 GCCCTGTAACTAAAACGCTGTG 60.096 50.000 0.00 0.00 0.00 3.66
3485 3556 4.108427 TGAGGTGGTTTTCCCCCA 57.892 55.556 0.00 0.00 39.73 4.96
3486 3557 2.575290 TGAGGTGGTTTTCCCCCAT 58.425 52.632 0.00 0.00 39.73 4.00
3487 3558 1.761711 TGAGGTGGTTTTCCCCCATA 58.238 50.000 0.00 0.00 39.73 2.74
3488 3559 2.074579 TGAGGTGGTTTTCCCCCATAA 58.925 47.619 0.00 0.00 39.73 1.90
3489 3560 2.451273 TGAGGTGGTTTTCCCCCATAAA 59.549 45.455 0.00 0.00 39.73 1.40
3490 3561 2.829720 GAGGTGGTTTTCCCCCATAAAC 59.170 50.000 0.00 0.00 39.73 2.01
3491 3562 1.546923 GGTGGTTTTCCCCCATAAACG 59.453 52.381 0.00 0.00 39.73 3.60
3492 3563 1.546923 GTGGTTTTCCCCCATAAACGG 59.453 52.381 0.00 0.00 39.73 4.44
3493 3564 1.147399 TGGTTTTCCCCCATAAACGGT 59.853 47.619 0.00 0.00 39.73 4.83
3494 3565 1.546923 GGTTTTCCCCCATAAACGGTG 59.453 52.381 0.00 0.00 35.59 4.94
3495 3566 1.067425 GTTTTCCCCCATAAACGGTGC 60.067 52.381 0.00 0.00 0.00 5.01
3496 3567 0.112606 TTTCCCCCATAAACGGTGCA 59.887 50.000 0.00 0.00 0.00 4.57
3497 3568 0.333312 TTCCCCCATAAACGGTGCAT 59.667 50.000 0.00 0.00 0.00 3.96
3498 3569 0.106918 TCCCCCATAAACGGTGCATC 60.107 55.000 0.00 0.00 0.00 3.91
3499 3570 0.106719 CCCCCATAAACGGTGCATCT 60.107 55.000 0.00 0.00 0.00 2.90
3500 3571 1.142060 CCCCCATAAACGGTGCATCTA 59.858 52.381 0.00 0.00 0.00 1.98
3501 3572 2.224769 CCCCCATAAACGGTGCATCTAT 60.225 50.000 0.00 0.00 0.00 1.98
3502 3573 3.486383 CCCCATAAACGGTGCATCTATT 58.514 45.455 0.00 0.00 0.00 1.73
3503 3574 4.505918 CCCCCATAAACGGTGCATCTATTA 60.506 45.833 0.00 0.00 0.00 0.98
3504 3575 5.067273 CCCCATAAACGGTGCATCTATTAA 58.933 41.667 0.00 0.00 0.00 1.40
3505 3576 5.048991 CCCCATAAACGGTGCATCTATTAAC 60.049 44.000 0.00 0.00 0.00 2.01
3506 3577 5.763204 CCCATAAACGGTGCATCTATTAACT 59.237 40.000 0.00 0.00 0.00 2.24
3507 3578 6.293407 CCCATAAACGGTGCATCTATTAACTG 60.293 42.308 0.00 0.00 0.00 3.16
3508 3579 6.481976 CCATAAACGGTGCATCTATTAACTGA 59.518 38.462 0.00 0.00 0.00 3.41
3509 3580 7.011950 CCATAAACGGTGCATCTATTAACTGAA 59.988 37.037 0.00 0.00 0.00 3.02
3510 3581 6.811253 AAACGGTGCATCTATTAACTGAAA 57.189 33.333 0.00 0.00 0.00 2.69
3511 3582 6.811253 AACGGTGCATCTATTAACTGAAAA 57.189 33.333 0.00 0.00 0.00 2.29
3512 3583 7.391148 AACGGTGCATCTATTAACTGAAAAT 57.609 32.000 0.00 0.00 0.00 1.82
3513 3584 6.785191 ACGGTGCATCTATTAACTGAAAATG 58.215 36.000 0.00 0.00 0.00 2.32
3514 3585 6.597672 ACGGTGCATCTATTAACTGAAAATGA 59.402 34.615 0.00 0.00 0.00 2.57
3515 3586 7.128331 CGGTGCATCTATTAACTGAAAATGAG 58.872 38.462 0.00 0.00 0.00 2.90
3516 3587 7.420800 GGTGCATCTATTAACTGAAAATGAGG 58.579 38.462 0.00 0.00 0.00 3.86
3517 3588 6.914757 GTGCATCTATTAACTGAAAATGAGGC 59.085 38.462 0.00 0.00 0.00 4.70
3518 3589 6.830324 TGCATCTATTAACTGAAAATGAGGCT 59.170 34.615 0.00 0.00 32.35 4.58
3519 3590 7.137426 GCATCTATTAACTGAAAATGAGGCTG 58.863 38.462 0.00 0.00 0.00 4.85
3520 3591 6.683974 TCTATTAACTGAAAATGAGGCTGC 57.316 37.500 0.00 0.00 0.00 5.25
3521 3592 6.179756 TCTATTAACTGAAAATGAGGCTGCA 58.820 36.000 0.50 0.00 0.00 4.41
3522 3593 5.726980 ATTAACTGAAAATGAGGCTGCAA 57.273 34.783 0.50 0.00 0.00 4.08
3523 3594 5.528043 TTAACTGAAAATGAGGCTGCAAA 57.472 34.783 0.50 0.00 0.00 3.68
3524 3595 3.375782 ACTGAAAATGAGGCTGCAAAC 57.624 42.857 0.50 0.00 0.00 2.93
3525 3596 2.287788 ACTGAAAATGAGGCTGCAAACG 60.288 45.455 0.50 0.00 0.00 3.60
3526 3597 1.952990 TGAAAATGAGGCTGCAAACGA 59.047 42.857 0.50 0.00 0.00 3.85
3527 3598 2.030893 TGAAAATGAGGCTGCAAACGAG 60.031 45.455 0.50 0.00 0.00 4.18
3528 3599 1.609208 AAATGAGGCTGCAAACGAGT 58.391 45.000 0.50 0.00 0.00 4.18
3529 3600 1.160137 AATGAGGCTGCAAACGAGTC 58.840 50.000 0.50 0.00 0.00 3.36
3530 3601 1.016130 ATGAGGCTGCAAACGAGTCG 61.016 55.000 11.85 11.85 0.00 4.18
3531 3602 1.372997 GAGGCTGCAAACGAGTCGA 60.373 57.895 21.50 0.00 0.00 4.20
3532 3603 1.347817 GAGGCTGCAAACGAGTCGAG 61.348 60.000 21.50 6.68 0.00 4.04
3533 3604 2.472049 GCTGCAAACGAGTCGAGC 59.528 61.111 21.50 19.17 0.00 5.03
3534 3605 2.024319 GCTGCAAACGAGTCGAGCT 61.024 57.895 21.50 0.00 0.00 4.09
3535 3606 1.950098 GCTGCAAACGAGTCGAGCTC 61.950 60.000 21.50 2.73 40.77 4.09
3549 3620 2.569134 GCTCGAGCGAGTTGGAGT 59.431 61.111 23.61 0.00 43.70 3.85
3550 3621 1.080434 GCTCGAGCGAGTTGGAGTT 60.080 57.895 23.61 0.00 43.70 3.01
3551 3622 1.347817 GCTCGAGCGAGTTGGAGTTG 61.348 60.000 23.61 0.00 43.70 3.16
3552 3623 0.734253 CTCGAGCGAGTTGGAGTTGG 60.734 60.000 11.50 0.00 37.47 3.77
3553 3624 2.383527 CGAGCGAGTTGGAGTTGGC 61.384 63.158 0.00 0.00 0.00 4.52
3554 3625 1.004440 GAGCGAGTTGGAGTTGGCT 60.004 57.895 0.00 0.00 0.00 4.75
3555 3626 1.004440 AGCGAGTTGGAGTTGGCTC 60.004 57.895 0.00 0.00 40.93 4.70
3556 3627 1.301716 GCGAGTTGGAGTTGGCTCA 60.302 57.895 0.00 0.00 43.37 4.26
3557 3628 1.294659 GCGAGTTGGAGTTGGCTCAG 61.295 60.000 0.00 0.00 43.37 3.35
3558 3629 1.294659 CGAGTTGGAGTTGGCTCAGC 61.295 60.000 0.00 0.00 43.37 4.26
3559 3630 0.036022 GAGTTGGAGTTGGCTCAGCT 59.964 55.000 0.00 0.00 43.37 4.24
3560 3631 0.036022 AGTTGGAGTTGGCTCAGCTC 59.964 55.000 0.00 9.52 43.37 4.09
3561 3632 0.250467 GTTGGAGTTGGCTCAGCTCA 60.250 55.000 16.61 0.00 42.19 4.26
3562 3633 0.473755 TTGGAGTTGGCTCAGCTCAA 59.526 50.000 16.61 0.00 42.19 3.02
3563 3634 0.250467 TGGAGTTGGCTCAGCTCAAC 60.250 55.000 18.30 18.30 42.19 3.18
3564 3635 0.036022 GGAGTTGGCTCAGCTCAACT 59.964 55.000 25.01 25.01 45.33 3.16
3565 3636 3.621953 AGTTGGCTCAGCTCAACTC 57.378 52.632 21.33 4.67 42.04 3.01
3566 3637 0.761187 AGTTGGCTCAGCTCAACTCA 59.239 50.000 21.33 0.00 42.04 3.41
3567 3638 1.350351 AGTTGGCTCAGCTCAACTCAT 59.650 47.619 21.33 6.57 42.04 2.90
3568 3639 2.568956 AGTTGGCTCAGCTCAACTCATA 59.431 45.455 21.33 0.00 42.04 2.15
3569 3640 3.199508 AGTTGGCTCAGCTCAACTCATAT 59.800 43.478 21.33 6.01 42.04 1.78
3570 3641 3.189618 TGGCTCAGCTCAACTCATATG 57.810 47.619 0.00 0.00 0.00 1.78
3571 3642 2.767960 TGGCTCAGCTCAACTCATATGA 59.232 45.455 5.07 5.07 0.00 2.15
3572 3643 3.198417 TGGCTCAGCTCAACTCATATGAA 59.802 43.478 6.90 0.00 0.00 2.57
3573 3644 4.194640 GGCTCAGCTCAACTCATATGAAA 58.805 43.478 6.90 0.00 0.00 2.69
3574 3645 4.637534 GGCTCAGCTCAACTCATATGAAAA 59.362 41.667 6.90 0.00 0.00 2.29
3575 3646 5.298777 GGCTCAGCTCAACTCATATGAAAAT 59.701 40.000 6.90 0.00 0.00 1.82
3576 3647 6.183360 GGCTCAGCTCAACTCATATGAAAATT 60.183 38.462 6.90 0.00 0.00 1.82
3577 3648 6.911511 GCTCAGCTCAACTCATATGAAAATTC 59.088 38.462 6.90 0.00 0.00 2.17
3578 3649 7.008440 TCAGCTCAACTCATATGAAAATTCG 57.992 36.000 6.90 0.00 0.00 3.34
3579 3650 6.818142 TCAGCTCAACTCATATGAAAATTCGA 59.182 34.615 6.90 0.00 0.00 3.71
3580 3651 7.010830 TCAGCTCAACTCATATGAAAATTCGAG 59.989 37.037 6.90 8.03 0.00 4.04
3581 3652 5.906285 GCTCAACTCATATGAAAATTCGAGC 59.094 40.000 6.90 13.24 34.84 5.03
3582 3653 6.036246 TCAACTCATATGAAAATTCGAGCG 57.964 37.500 6.90 0.00 0.00 5.03
3583 3654 5.810074 TCAACTCATATGAAAATTCGAGCGA 59.190 36.000 6.90 0.00 0.00 4.93
3584 3655 5.896922 ACTCATATGAAAATTCGAGCGAG 57.103 39.130 6.90 0.00 0.00 5.03
3585 3656 4.210120 ACTCATATGAAAATTCGAGCGAGC 59.790 41.667 6.90 0.00 0.00 5.03
3586 3657 4.371786 TCATATGAAAATTCGAGCGAGCT 58.628 39.130 1.98 0.00 0.00 4.09
3587 3658 4.445718 TCATATGAAAATTCGAGCGAGCTC 59.554 41.667 14.61 14.61 39.55 4.09
3588 3659 2.078849 TGAAAATTCGAGCGAGCTCA 57.921 45.000 22.81 6.73 42.86 4.26
3589 3660 2.412870 TGAAAATTCGAGCGAGCTCAA 58.587 42.857 22.81 16.09 42.86 3.02
3590 3661 2.805671 TGAAAATTCGAGCGAGCTCAAA 59.194 40.909 22.81 12.96 42.86 2.69
3591 3662 2.882742 AAATTCGAGCGAGCTCAAAC 57.117 45.000 22.81 2.13 42.86 2.93
3592 3663 2.086054 AATTCGAGCGAGCTCAAACT 57.914 45.000 22.81 7.61 42.86 2.66
3593 3664 2.941453 ATTCGAGCGAGCTCAAACTA 57.059 45.000 22.81 5.27 42.86 2.24
3594 3665 2.717580 TTCGAGCGAGCTCAAACTAA 57.282 45.000 22.81 7.56 42.86 2.24
3595 3666 2.264109 TCGAGCGAGCTCAAACTAAG 57.736 50.000 22.81 6.71 42.86 2.18
3596 3667 1.540267 TCGAGCGAGCTCAAACTAAGT 59.460 47.619 22.81 0.00 42.86 2.24
3597 3668 1.651138 CGAGCGAGCTCAAACTAAGTG 59.349 52.381 22.81 1.80 42.86 3.16
3598 3669 2.668556 CGAGCGAGCTCAAACTAAGTGA 60.669 50.000 22.81 0.00 42.86 3.41
3599 3670 3.318017 GAGCGAGCTCAAACTAAGTGAA 58.682 45.455 19.09 0.00 42.31 3.18
3600 3671 3.321497 AGCGAGCTCAAACTAAGTGAAG 58.679 45.455 15.40 0.00 0.00 3.02
3601 3672 2.159774 GCGAGCTCAAACTAAGTGAAGC 60.160 50.000 15.40 0.00 0.00 3.86
3602 3673 3.321497 CGAGCTCAAACTAAGTGAAGCT 58.679 45.455 15.40 0.00 34.39 3.74
3603 3674 3.366422 CGAGCTCAAACTAAGTGAAGCTC 59.634 47.826 15.40 14.94 39.84 4.09
3604 3675 4.310769 GAGCTCAAACTAAGTGAAGCTCA 58.689 43.478 9.40 0.00 41.20 4.26
3605 3676 4.904241 AGCTCAAACTAAGTGAAGCTCAT 58.096 39.130 0.00 0.00 29.30 2.90
3606 3677 4.694509 AGCTCAAACTAAGTGAAGCTCATG 59.305 41.667 0.00 0.00 29.30 3.07
3607 3678 4.692625 GCTCAAACTAAGTGAAGCTCATGA 59.307 41.667 0.00 0.00 0.00 3.07
3608 3679 5.353678 GCTCAAACTAAGTGAAGCTCATGAT 59.646 40.000 0.00 0.00 0.00 2.45
3609 3680 6.456718 GCTCAAACTAAGTGAAGCTCATGATC 60.457 42.308 0.00 0.00 0.00 2.92
3610 3681 5.578336 TCAAACTAAGTGAAGCTCATGATCG 59.422 40.000 0.00 0.00 0.00 3.69
3611 3682 4.991153 ACTAAGTGAAGCTCATGATCGA 57.009 40.909 0.00 0.00 0.00 3.59
3612 3683 4.930963 ACTAAGTGAAGCTCATGATCGAG 58.069 43.478 0.00 0.00 36.02 4.04
3625 3696 6.824305 TCATGATCGAGCTGTAGAATATGA 57.176 37.500 0.90 0.00 0.00 2.15
3626 3697 6.616017 TCATGATCGAGCTGTAGAATATGAC 58.384 40.000 0.90 0.00 0.00 3.06
3627 3698 6.432472 TCATGATCGAGCTGTAGAATATGACT 59.568 38.462 0.90 0.00 0.00 3.41
3628 3699 6.247727 TGATCGAGCTGTAGAATATGACTC 57.752 41.667 0.90 0.00 0.00 3.36
3629 3700 4.733972 TCGAGCTGTAGAATATGACTCG 57.266 45.455 0.00 0.00 45.02 4.18
3630 3701 4.127907 TCGAGCTGTAGAATATGACTCGT 58.872 43.478 9.05 0.00 44.26 4.18
3631 3702 4.024809 TCGAGCTGTAGAATATGACTCGTG 60.025 45.833 9.05 0.00 44.26 4.35
3632 3703 3.971150 AGCTGTAGAATATGACTCGTGC 58.029 45.455 0.00 0.00 0.00 5.34
3633 3704 3.634448 AGCTGTAGAATATGACTCGTGCT 59.366 43.478 0.00 0.00 0.00 4.40
3634 3705 3.978217 GCTGTAGAATATGACTCGTGCTC 59.022 47.826 0.00 0.00 0.00 4.26
3635 3706 4.498177 GCTGTAGAATATGACTCGTGCTCA 60.498 45.833 0.00 0.00 0.00 4.26
3636 3707 5.175090 TGTAGAATATGACTCGTGCTCAG 57.825 43.478 0.00 0.00 0.00 3.35
3637 3708 3.090952 AGAATATGACTCGTGCTCAGC 57.909 47.619 0.00 0.00 0.00 4.26
3638 3709 2.692557 AGAATATGACTCGTGCTCAGCT 59.307 45.455 0.00 0.00 0.00 4.24
3639 3710 3.131933 AGAATATGACTCGTGCTCAGCTT 59.868 43.478 0.00 0.00 0.00 3.74
3640 3711 2.284263 TATGACTCGTGCTCAGCTTG 57.716 50.000 0.00 0.00 0.00 4.01
3641 3712 0.319728 ATGACTCGTGCTCAGCTTGT 59.680 50.000 0.00 0.00 0.00 3.16
3642 3713 0.958822 TGACTCGTGCTCAGCTTGTA 59.041 50.000 0.00 0.00 0.00 2.41
3643 3714 1.339929 TGACTCGTGCTCAGCTTGTAA 59.660 47.619 0.00 0.00 0.00 2.41
3644 3715 1.721926 GACTCGTGCTCAGCTTGTAAC 59.278 52.381 0.00 0.00 0.00 2.50
3645 3716 0.710567 CTCGTGCTCAGCTTGTAACG 59.289 55.000 0.00 0.00 0.00 3.18
3646 3717 0.312729 TCGTGCTCAGCTTGTAACGA 59.687 50.000 5.13 5.13 37.68 3.85
3647 3718 1.067846 TCGTGCTCAGCTTGTAACGAT 60.068 47.619 5.13 0.00 35.35 3.73
3648 3719 1.321743 CGTGCTCAGCTTGTAACGATC 59.678 52.381 0.00 0.00 33.03 3.69
3649 3720 2.611518 GTGCTCAGCTTGTAACGATCT 58.388 47.619 0.00 0.00 0.00 2.75
3650 3721 2.600867 GTGCTCAGCTTGTAACGATCTC 59.399 50.000 0.00 0.00 0.00 2.75
3651 3722 1.849219 GCTCAGCTTGTAACGATCTCG 59.151 52.381 0.00 0.00 46.33 4.04
3652 3723 2.478031 GCTCAGCTTGTAACGATCTCGA 60.478 50.000 6.60 0.00 43.02 4.04
3653 3724 3.358775 CTCAGCTTGTAACGATCTCGAG 58.641 50.000 5.93 5.93 43.02 4.04
3654 3725 2.747989 TCAGCTTGTAACGATCTCGAGT 59.252 45.455 13.13 0.00 43.02 4.18
3655 3726 3.102276 CAGCTTGTAACGATCTCGAGTC 58.898 50.000 13.13 8.49 43.02 3.36
3656 3727 2.102633 GCTTGTAACGATCTCGAGTCG 58.897 52.381 25.46 25.46 43.02 4.18
3657 3728 2.222976 GCTTGTAACGATCTCGAGTCGA 60.223 50.000 30.46 15.64 41.40 4.20
3658 3729 3.546417 GCTTGTAACGATCTCGAGTCGAT 60.546 47.826 30.46 24.43 41.40 3.59
3659 3730 3.856104 TGTAACGATCTCGAGTCGATC 57.144 47.619 30.46 18.97 41.40 3.69
3660 3731 3.455327 TGTAACGATCTCGAGTCGATCT 58.545 45.455 30.46 20.49 41.40 2.75
3661 3732 3.869832 TGTAACGATCTCGAGTCGATCTT 59.130 43.478 30.46 21.08 41.40 2.40
3662 3733 3.326733 AACGATCTCGAGTCGATCTTG 57.673 47.619 30.46 12.19 41.40 3.02
3663 3734 2.552031 ACGATCTCGAGTCGATCTTGA 58.448 47.619 30.46 10.19 41.40 3.02
3668 3739 3.519908 CTCGAGTCGATCTTGAGCTAG 57.480 52.381 16.94 0.00 44.63 3.42
3669 3740 2.869801 CTCGAGTCGATCTTGAGCTAGT 59.130 50.000 16.94 0.00 44.63 2.57
3670 3741 3.271729 TCGAGTCGATCTTGAGCTAGTT 58.728 45.455 12.09 0.00 33.12 2.24
3671 3742 3.690139 TCGAGTCGATCTTGAGCTAGTTT 59.310 43.478 12.09 0.00 33.12 2.66
3672 3743 4.032355 CGAGTCGATCTTGAGCTAGTTTC 58.968 47.826 6.73 0.00 0.00 2.78
3673 3744 4.022464 AGTCGATCTTGAGCTAGTTTCG 57.978 45.455 0.00 0.00 0.00 3.46
3674 3745 3.690139 AGTCGATCTTGAGCTAGTTTCGA 59.310 43.478 8.98 8.98 32.62 3.71
3675 3746 4.032355 GTCGATCTTGAGCTAGTTTCGAG 58.968 47.826 11.78 4.47 34.30 4.04
3676 3747 2.786578 CGATCTTGAGCTAGTTTCGAGC 59.213 50.000 8.14 0.00 40.42 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.976015 TCTCTCTCTCTCTCTTTTCCCC 58.024 50.000 0.00 0.00 0.00 4.81
28 29 6.012508 TCTCCTCTTCTCTCTCTCTCTCTTTT 60.013 42.308 0.00 0.00 0.00 2.27
32 33 5.359194 TTCTCCTCTTCTCTCTCTCTCTC 57.641 47.826 0.00 0.00 0.00 3.20
34 35 5.501156 ACTTTCTCCTCTTCTCTCTCTCTC 58.499 45.833 0.00 0.00 0.00 3.20
70 71 2.279120 GAGCTGTGCCTCCGATCG 60.279 66.667 8.51 8.51 0.00 3.69
106 107 7.065443 ACTGGTAAAATTAGCTGACGGAATTAC 59.935 37.037 13.78 0.00 35.14 1.89
131 132 1.127213 TGCGAGCGAACGGAAAATTAC 59.873 47.619 0.00 0.00 0.00 1.89
132 133 1.127213 GTGCGAGCGAACGGAAAATTA 59.873 47.619 0.00 0.00 35.18 1.40
176 177 4.430908 GGGGAGACGTAGACAAATTACTG 58.569 47.826 0.00 0.00 0.00 2.74
224 225 4.947388 TCCTGATTCGAAACCCTAATTTGG 59.053 41.667 0.00 0.00 0.00 3.28
226 227 6.187682 ACATCCTGATTCGAAACCCTAATTT 58.812 36.000 0.00 0.00 0.00 1.82
243 244 3.313526 CGATTCTAGGCCAAAACATCCTG 59.686 47.826 5.01 0.00 0.00 3.86
251 252 1.187974 TCCGACGATTCTAGGCCAAA 58.812 50.000 5.01 0.00 0.00 3.28
273 274 4.035684 TCGAATCGAAACAGAGCGATAAG 58.964 43.478 1.57 0.00 45.50 1.73
274 275 4.023739 TCGAATCGAAACAGAGCGATAA 57.976 40.909 1.57 0.00 45.50 1.75
277 278 2.185262 CATCGAATCGAAACAGAGCGA 58.815 47.619 10.12 0.00 39.99 4.93
279 280 1.929836 AGCATCGAATCGAAACAGAGC 59.070 47.619 10.12 7.36 39.99 4.09
281 282 2.672874 CCAAGCATCGAATCGAAACAGA 59.327 45.455 10.12 0.00 39.99 3.41
282 283 2.416547 ACCAAGCATCGAATCGAAACAG 59.583 45.455 10.12 1.44 39.99 3.16
306 307 1.507141 ATTAAGCATACGCAGCCGGC 61.507 55.000 21.89 21.89 42.27 6.13
311 312 5.484173 TTTCTCCAATTAAGCATACGCAG 57.516 39.130 0.00 0.00 42.27 5.18
313 314 6.751888 ACAAATTTCTCCAATTAAGCATACGC 59.248 34.615 0.00 0.00 33.60 4.42
331 332 2.698274 GACCAGACCCACCAACAAATTT 59.302 45.455 0.00 0.00 0.00 1.82
334 335 0.464735 CGACCAGACCCACCAACAAA 60.465 55.000 0.00 0.00 0.00 2.83
429 430 5.621329 GCACCCGTGATAAAGCTGTAAATTT 60.621 40.000 0.00 0.00 0.00 1.82
450 451 4.279659 CGACTTTTTCCTGTACAAAGCAC 58.720 43.478 0.00 0.00 31.74 4.40
480 481 1.096386 GCAATCCTCAGCCTGCAGAG 61.096 60.000 17.39 6.56 34.87 3.35
482 483 0.963856 TTGCAATCCTCAGCCTGCAG 60.964 55.000 6.78 6.78 44.94 4.41
510 511 1.829222 GGGACGATGGGAGTAGTTTCA 59.171 52.381 0.00 0.00 0.00 2.69
518 519 6.791867 TCTTATATTATGGGACGATGGGAG 57.208 41.667 0.00 0.00 0.00 4.30
519 520 6.350696 CGTTCTTATATTATGGGACGATGGGA 60.351 42.308 0.00 0.00 0.00 4.37
520 521 5.810587 CGTTCTTATATTATGGGACGATGGG 59.189 44.000 0.00 0.00 0.00 4.00
521 522 6.395629 ACGTTCTTATATTATGGGACGATGG 58.604 40.000 14.76 0.00 0.00 3.51
522 523 7.884816 AACGTTCTTATATTATGGGACGATG 57.115 36.000 14.76 0.00 0.00 3.84
523 524 8.897872 AAAACGTTCTTATATTATGGGACGAT 57.102 30.769 0.00 5.03 0.00 3.73
524 525 8.721019 AAAAACGTTCTTATATTATGGGACGA 57.279 30.769 0.00 0.00 0.00 4.20
525 526 8.605746 TGAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
532 533 9.421806 TCCGTCTTGAAAAACGTTCTTATATTA 57.578 29.630 0.00 0.00 37.19 0.98
533 534 8.314143 TCCGTCTTGAAAAACGTTCTTATATT 57.686 30.769 0.00 0.00 37.19 1.28
534 535 7.064253 CCTCCGTCTTGAAAAACGTTCTTATAT 59.936 37.037 0.00 0.00 37.19 0.86
535 536 6.366877 CCTCCGTCTTGAAAAACGTTCTTATA 59.633 38.462 0.00 0.00 37.19 0.98
536 537 5.178809 CCTCCGTCTTGAAAAACGTTCTTAT 59.821 40.000 0.00 0.00 37.19 1.73
537 538 4.508861 CCTCCGTCTTGAAAAACGTTCTTA 59.491 41.667 0.00 0.00 37.19 2.10
538 539 3.311596 CCTCCGTCTTGAAAAACGTTCTT 59.688 43.478 0.00 0.00 37.19 2.52
539 540 2.870411 CCTCCGTCTTGAAAAACGTTCT 59.130 45.455 0.00 0.00 37.19 3.01
540 541 2.032290 CCCTCCGTCTTGAAAAACGTTC 60.032 50.000 0.00 0.00 37.19 3.95
541 542 1.944709 CCCTCCGTCTTGAAAAACGTT 59.055 47.619 0.00 0.00 37.19 3.99
542 543 1.139455 TCCCTCCGTCTTGAAAAACGT 59.861 47.619 0.00 0.00 37.19 3.99
543 544 1.798813 CTCCCTCCGTCTTGAAAAACG 59.201 52.381 0.00 0.00 38.58 3.60
544 545 2.847441 ACTCCCTCCGTCTTGAAAAAC 58.153 47.619 0.00 0.00 0.00 2.43
545 546 3.899360 TCTACTCCCTCCGTCTTGAAAAA 59.101 43.478 0.00 0.00 0.00 1.94
546 547 3.503365 TCTACTCCCTCCGTCTTGAAAA 58.497 45.455 0.00 0.00 0.00 2.29
547 548 3.090037 CTCTACTCCCTCCGTCTTGAAA 58.910 50.000 0.00 0.00 0.00 2.69
548 549 2.041350 ACTCTACTCCCTCCGTCTTGAA 59.959 50.000 0.00 0.00 0.00 2.69
549 550 1.634459 ACTCTACTCCCTCCGTCTTGA 59.366 52.381 0.00 0.00 0.00 3.02
550 551 2.131776 ACTCTACTCCCTCCGTCTTG 57.868 55.000 0.00 0.00 0.00 3.02
551 552 2.903375 AACTCTACTCCCTCCGTCTT 57.097 50.000 0.00 0.00 0.00 3.01
552 553 2.903375 AAACTCTACTCCCTCCGTCT 57.097 50.000 0.00 0.00 0.00 4.18
553 554 3.619419 ACTAAACTCTACTCCCTCCGTC 58.381 50.000 0.00 0.00 0.00 4.79
554 555 3.009916 TGACTAAACTCTACTCCCTCCGT 59.990 47.826 0.00 0.00 0.00 4.69
555 556 3.377798 GTGACTAAACTCTACTCCCTCCG 59.622 52.174 0.00 0.00 0.00 4.63
556 557 3.700539 GGTGACTAAACTCTACTCCCTCC 59.299 52.174 0.00 0.00 0.00 4.30
557 558 3.700539 GGGTGACTAAACTCTACTCCCTC 59.299 52.174 0.00 0.00 33.28 4.30
558 559 3.566111 GGGGTGACTAAACTCTACTCCCT 60.566 52.174 0.00 0.00 35.45 4.20
559 560 2.765135 GGGGTGACTAAACTCTACTCCC 59.235 54.545 0.00 0.00 34.69 4.30
560 561 3.447944 CAGGGGTGACTAAACTCTACTCC 59.552 52.174 0.00 0.00 31.96 3.85
561 562 4.087907 ACAGGGGTGACTAAACTCTACTC 58.912 47.826 0.00 0.00 0.00 2.59
562 563 4.129317 ACAGGGGTGACTAAACTCTACT 57.871 45.455 0.00 0.00 0.00 2.57
644 645 4.803098 AACCGAGTAAACTGAGCTACAT 57.197 40.909 0.00 0.00 0.00 2.29
652 653 2.724839 GCGATGCAAACCGAGTAAACTG 60.725 50.000 10.10 0.00 0.00 3.16
669 670 4.696479 ATCAGGAACCTAAATCTGCGAT 57.304 40.909 0.00 0.00 0.00 4.58
785 820 0.599204 CTAGTTGTTCACCGCACCGT 60.599 55.000 0.00 0.00 0.00 4.83
830 865 5.303333 TCAGGAAAAATAAACCCTTGGTCAC 59.697 40.000 0.00 0.00 33.12 3.67
879 914 8.854117 ACTTCAGCTCAAATTTCATTAAGAAGT 58.146 29.630 12.19 12.19 37.57 3.01
880 915 9.125906 CACTTCAGCTCAAATTTCATTAAGAAG 57.874 33.333 11.32 11.32 37.57 2.85
892 927 7.330208 GCAATAATCAAACACTTCAGCTCAAAT 59.670 33.333 0.00 0.00 0.00 2.32
937 973 1.650528 CCCCAAACCCAGGCAAATAA 58.349 50.000 0.00 0.00 0.00 1.40
991 1027 7.002250 TGCAATCAAAGTCCATAAAATTCCA 57.998 32.000 0.00 0.00 0.00 3.53
992 1028 7.903995 TTGCAATCAAAGTCCATAAAATTCC 57.096 32.000 0.00 0.00 0.00 3.01
1049 1085 0.099436 GCCCTCGTTGCAAATGCTAG 59.901 55.000 0.00 0.00 42.66 3.42
1094 1130 6.279882 CACTTTTTAGCCTTTCCACAATGAA 58.720 36.000 0.00 0.00 0.00 2.57
1137 1173 1.226746 GACTTGACTCCGGGTTGTTG 58.773 55.000 0.00 0.00 0.00 3.33
1224 1260 3.250744 GAAGCACATAACGCTACACTCA 58.749 45.455 0.00 0.00 39.29 3.41
1234 1270 3.064545 GGCAGATCAGTGAAGCACATAAC 59.935 47.826 14.84 0.00 36.74 1.89
1470 1506 1.740025 GATCTGCTTTGAAACTCCCGG 59.260 52.381 0.00 0.00 0.00 5.73
1485 1521 7.501559 ACACTAAATCTTCCCATGAATGATCTG 59.498 37.037 0.00 0.00 0.00 2.90
1764 1800 4.927267 AGTACCATTCCCAGAAATGTGA 57.073 40.909 0.00 0.00 35.31 3.58
2021 2057 7.554835 TGGAAATTATAGTTGTTAACTCGCCAT 59.445 33.333 7.22 0.00 41.77 4.40
2157 2193 7.574592 GCAGCTGGTTTAATATTCTCATCATCC 60.575 40.741 17.12 0.00 0.00 3.51
2349 2385 1.035932 GCTGTGGAGGCTCTACGGTA 61.036 60.000 32.10 13.93 36.70 4.02
2472 2508 3.055530 TCTTCTCAATCTCCAGTGCTTCC 60.056 47.826 0.00 0.00 0.00 3.46
2640 2676 0.825425 TGGGACGCTTGATTTGCCAA 60.825 50.000 0.00 0.00 0.00 4.52
2805 2841 4.701361 CATACATATCAAATGCGACCACG 58.299 43.478 0.00 0.00 42.93 4.94
2837 2873 2.175931 ACCCAATGTACACCAGGTCAAA 59.824 45.455 0.00 0.00 0.00 2.69
2907 2945 7.305763 GCAAACAGAACGATACAAAAACGAAAT 60.306 33.333 0.00 0.00 0.00 2.17
2908 2946 6.021311 GCAAACAGAACGATACAAAAACGAAA 60.021 34.615 0.00 0.00 0.00 3.46
2959 2997 2.236146 TCGACTATTCCTGCATGGTGTT 59.764 45.455 0.00 0.00 37.07 3.32
2976 3016 6.807230 ACACTGAGATAAATACACAAGTCGAC 59.193 38.462 7.70 7.70 0.00 4.20
3002 3042 2.340337 GGATCAAACATGTTTGCTGCC 58.660 47.619 35.90 30.52 46.92 4.85
3041 3081 2.608752 GCAAAGGCCACAGACTGAAATG 60.609 50.000 10.08 0.00 0.00 2.32
3048 3088 1.537202 CTTGTAGCAAAGGCCACAGAC 59.463 52.381 5.01 0.00 42.49 3.51
3051 3091 2.356665 TTCTTGTAGCAAAGGCCACA 57.643 45.000 5.01 0.00 39.92 4.17
3061 3101 9.931210 GTGGTACAATACATATTTTCTTGTAGC 57.069 33.333 13.19 13.19 44.16 3.58
3073 3113 8.788806 CCTGAAAACAAAGTGGTACAATACATA 58.211 33.333 0.00 0.00 44.16 2.29
3074 3114 7.286775 ACCTGAAAACAAAGTGGTACAATACAT 59.713 33.333 0.00 0.00 44.16 2.29
3075 3115 6.603997 ACCTGAAAACAAAGTGGTACAATACA 59.396 34.615 0.00 0.00 44.16 2.29
3076 3116 7.034685 ACCTGAAAACAAAGTGGTACAATAC 57.965 36.000 0.00 0.00 44.16 1.89
3077 3117 8.788806 CATACCTGAAAACAAAGTGGTACAATA 58.211 33.333 0.00 0.00 44.16 1.90
3078 3118 7.255801 CCATACCTGAAAACAAAGTGGTACAAT 60.256 37.037 0.00 0.00 44.16 2.71
3079 3119 6.039941 CCATACCTGAAAACAAAGTGGTACAA 59.960 38.462 0.00 0.00 44.16 2.41
3080 3120 5.533154 CCATACCTGAAAACAAAGTGGTACA 59.467 40.000 0.00 0.00 33.60 2.90
3081 3121 5.048294 CCCATACCTGAAAACAAAGTGGTAC 60.048 44.000 0.00 0.00 33.60 3.34
3082 3122 5.074115 CCCATACCTGAAAACAAAGTGGTA 58.926 41.667 0.00 0.00 35.01 3.25
3083 3123 3.895041 CCCATACCTGAAAACAAAGTGGT 59.105 43.478 0.00 0.00 0.00 4.16
3084 3124 3.895041 ACCCATACCTGAAAACAAAGTGG 59.105 43.478 0.00 0.00 0.00 4.00
3085 3125 5.529581 AACCCATACCTGAAAACAAAGTG 57.470 39.130 0.00 0.00 0.00 3.16
3086 3126 5.423931 ACAAACCCATACCTGAAAACAAAGT 59.576 36.000 0.00 0.00 0.00 2.66
3103 3143 4.109766 GGCTTCGCAATAATTACAAACCC 58.890 43.478 0.00 0.00 0.00 4.11
3115 3155 2.032550 CGATTCAATCTGGCTTCGCAAT 59.967 45.455 0.00 0.00 0.00 3.56
3153 3206 3.009033 ACAGGCTGACACCAAAGCTATAA 59.991 43.478 23.66 0.00 39.46 0.98
3154 3207 2.571653 ACAGGCTGACACCAAAGCTATA 59.428 45.455 23.66 0.00 39.46 1.31
3155 3208 1.352352 ACAGGCTGACACCAAAGCTAT 59.648 47.619 23.66 0.00 39.46 2.97
3156 3209 0.764890 ACAGGCTGACACCAAAGCTA 59.235 50.000 23.66 0.00 39.46 3.32
3157 3210 0.536006 GACAGGCTGACACCAAAGCT 60.536 55.000 23.66 0.00 39.46 3.74
3158 3211 0.819259 TGACAGGCTGACACCAAAGC 60.819 55.000 23.66 0.00 38.76 3.51
3159 3212 1.233019 CTGACAGGCTGACACCAAAG 58.767 55.000 23.66 5.12 0.00 2.77
3199 3270 2.203070 GGGCCACATAGAGCACGG 60.203 66.667 4.39 0.00 0.00 4.94
3468 3539 1.761711 TATGGGGGAAAACCACCTCA 58.238 50.000 9.04 0.00 44.49 3.86
3469 3540 2.829720 GTTTATGGGGGAAAACCACCTC 59.170 50.000 9.04 0.00 44.49 3.85
3470 3541 2.820105 CGTTTATGGGGGAAAACCACCT 60.820 50.000 9.04 0.00 44.49 4.00
3471 3542 1.546923 CGTTTATGGGGGAAAACCACC 59.453 52.381 0.00 0.00 44.49 4.61
3472 3543 1.546923 CCGTTTATGGGGGAAAACCAC 59.453 52.381 0.00 0.00 45.74 4.16
3473 3544 1.147399 ACCGTTTATGGGGGAAAACCA 59.853 47.619 0.00 0.00 42.91 3.67
3474 3545 1.546923 CACCGTTTATGGGGGAAAACC 59.453 52.381 0.00 0.00 33.05 3.27
3475 3546 1.067425 GCACCGTTTATGGGGGAAAAC 60.067 52.381 0.00 0.00 31.01 2.43
3476 3547 1.258676 GCACCGTTTATGGGGGAAAA 58.741 50.000 0.00 0.00 31.01 2.29
3477 3548 0.112606 TGCACCGTTTATGGGGGAAA 59.887 50.000 0.00 0.00 31.01 3.13
3478 3549 0.333312 ATGCACCGTTTATGGGGGAA 59.667 50.000 0.00 0.00 35.85 3.97
3479 3550 0.106918 GATGCACCGTTTATGGGGGA 60.107 55.000 0.00 0.00 37.07 4.81
3480 3551 0.106719 AGATGCACCGTTTATGGGGG 60.107 55.000 0.00 0.00 31.01 5.40
3481 3552 2.631160 TAGATGCACCGTTTATGGGG 57.369 50.000 0.00 0.00 34.65 4.96
3482 3553 5.763204 AGTTAATAGATGCACCGTTTATGGG 59.237 40.000 0.00 0.00 0.00 4.00
3483 3554 6.481976 TCAGTTAATAGATGCACCGTTTATGG 59.518 38.462 0.00 0.00 0.00 2.74
3484 3555 7.477144 TCAGTTAATAGATGCACCGTTTATG 57.523 36.000 0.00 0.00 0.00 1.90
3485 3556 8.500753 TTTCAGTTAATAGATGCACCGTTTAT 57.499 30.769 0.00 0.00 0.00 1.40
3486 3557 7.908827 TTTCAGTTAATAGATGCACCGTTTA 57.091 32.000 0.00 0.00 0.00 2.01
3487 3558 6.811253 TTTCAGTTAATAGATGCACCGTTT 57.189 33.333 0.00 0.00 0.00 3.60
3488 3559 6.811253 TTTTCAGTTAATAGATGCACCGTT 57.189 33.333 0.00 0.00 0.00 4.44
3489 3560 6.597672 TCATTTTCAGTTAATAGATGCACCGT 59.402 34.615 0.00 0.00 0.00 4.83
3490 3561 7.015226 TCATTTTCAGTTAATAGATGCACCG 57.985 36.000 0.00 0.00 0.00 4.94
3491 3562 7.420800 CCTCATTTTCAGTTAATAGATGCACC 58.579 38.462 0.00 0.00 0.00 5.01
3492 3563 6.914757 GCCTCATTTTCAGTTAATAGATGCAC 59.085 38.462 0.00 0.00 0.00 4.57
3493 3564 6.830324 AGCCTCATTTTCAGTTAATAGATGCA 59.170 34.615 0.00 0.00 0.00 3.96
3494 3565 7.137426 CAGCCTCATTTTCAGTTAATAGATGC 58.863 38.462 0.00 0.00 0.00 3.91
3495 3566 7.137426 GCAGCCTCATTTTCAGTTAATAGATG 58.863 38.462 0.00 0.00 0.00 2.90
3496 3567 6.830324 TGCAGCCTCATTTTCAGTTAATAGAT 59.170 34.615 0.00 0.00 0.00 1.98
3497 3568 6.179756 TGCAGCCTCATTTTCAGTTAATAGA 58.820 36.000 0.00 0.00 0.00 1.98
3498 3569 6.441093 TGCAGCCTCATTTTCAGTTAATAG 57.559 37.500 0.00 0.00 0.00 1.73
3499 3570 6.832520 TTGCAGCCTCATTTTCAGTTAATA 57.167 33.333 0.00 0.00 0.00 0.98
3500 3571 5.726980 TTGCAGCCTCATTTTCAGTTAAT 57.273 34.783 0.00 0.00 0.00 1.40
3501 3572 5.288804 GTTTGCAGCCTCATTTTCAGTTAA 58.711 37.500 0.00 0.00 0.00 2.01
3502 3573 4.556501 CGTTTGCAGCCTCATTTTCAGTTA 60.557 41.667 0.00 0.00 0.00 2.24
3503 3574 3.721035 GTTTGCAGCCTCATTTTCAGTT 58.279 40.909 0.00 0.00 0.00 3.16
3504 3575 2.287788 CGTTTGCAGCCTCATTTTCAGT 60.288 45.455 0.00 0.00 0.00 3.41
3505 3576 2.030893 TCGTTTGCAGCCTCATTTTCAG 60.031 45.455 0.00 0.00 0.00 3.02
3506 3577 1.952990 TCGTTTGCAGCCTCATTTTCA 59.047 42.857 0.00 0.00 0.00 2.69
3507 3578 2.030805 ACTCGTTTGCAGCCTCATTTTC 60.031 45.455 0.00 0.00 0.00 2.29
3508 3579 1.956477 ACTCGTTTGCAGCCTCATTTT 59.044 42.857 0.00 0.00 0.00 1.82
3509 3580 1.537202 GACTCGTTTGCAGCCTCATTT 59.463 47.619 0.00 0.00 0.00 2.32
3510 3581 1.160137 GACTCGTTTGCAGCCTCATT 58.840 50.000 0.00 0.00 0.00 2.57
3511 3582 1.016130 CGACTCGTTTGCAGCCTCAT 61.016 55.000 0.00 0.00 0.00 2.90
3512 3583 1.664649 CGACTCGTTTGCAGCCTCA 60.665 57.895 0.00 0.00 0.00 3.86
3513 3584 1.347817 CTCGACTCGTTTGCAGCCTC 61.348 60.000 0.00 0.00 0.00 4.70
3514 3585 1.373497 CTCGACTCGTTTGCAGCCT 60.373 57.895 0.00 0.00 0.00 4.58
3515 3586 3.016474 GCTCGACTCGTTTGCAGCC 62.016 63.158 0.00 0.00 0.00 4.85
3516 3587 1.950098 GAGCTCGACTCGTTTGCAGC 61.950 60.000 0.00 8.23 35.18 5.25
3517 3588 2.066000 GAGCTCGACTCGTTTGCAG 58.934 57.895 0.00 0.00 35.18 4.41
3518 3589 4.245054 GAGCTCGACTCGTTTGCA 57.755 55.556 0.00 0.00 35.18 4.08
3525 3596 1.973137 AACTCGCTCGAGCTCGACTC 61.973 60.000 33.84 25.05 45.54 3.36
3526 3597 2.036006 AACTCGCTCGAGCTCGACT 61.036 57.895 33.84 12.70 45.54 4.18
3527 3598 1.865622 CAACTCGCTCGAGCTCGAC 60.866 63.158 33.84 26.44 45.54 4.20
3528 3599 2.481009 CAACTCGCTCGAGCTCGA 59.519 61.111 34.65 34.65 45.54 4.04
3529 3600 2.578178 CCAACTCGCTCGAGCTCG 60.578 66.667 32.88 30.03 45.54 5.03
3530 3601 1.226547 CTCCAACTCGCTCGAGCTC 60.227 63.158 32.88 2.73 45.54 4.09
3531 3602 1.528292 AACTCCAACTCGCTCGAGCT 61.528 55.000 32.88 13.94 45.54 4.09
3532 3603 1.080434 AACTCCAACTCGCTCGAGC 60.080 57.895 27.64 27.64 45.54 5.03
3533 3604 0.734253 CCAACTCCAACTCGCTCGAG 60.734 60.000 16.71 16.71 46.91 4.04
3534 3605 1.289066 CCAACTCCAACTCGCTCGA 59.711 57.895 0.00 0.00 0.00 4.04
3535 3606 2.383527 GCCAACTCCAACTCGCTCG 61.384 63.158 0.00 0.00 0.00 5.03
3536 3607 1.004440 AGCCAACTCCAACTCGCTC 60.004 57.895 0.00 0.00 0.00 5.03
3537 3608 1.004440 GAGCCAACTCCAACTCGCT 60.004 57.895 0.00 0.00 36.90 4.93
3538 3609 1.294659 CTGAGCCAACTCCAACTCGC 61.295 60.000 0.00 0.00 42.74 5.03
3539 3610 1.294659 GCTGAGCCAACTCCAACTCG 61.295 60.000 0.00 0.00 42.74 4.18
3540 3611 0.036022 AGCTGAGCCAACTCCAACTC 59.964 55.000 0.00 0.00 42.74 3.01
3541 3612 0.036022 GAGCTGAGCCAACTCCAACT 59.964 55.000 0.00 0.00 42.74 3.16
3542 3613 0.250467 TGAGCTGAGCCAACTCCAAC 60.250 55.000 0.00 0.00 42.74 3.77
3543 3614 0.473755 TTGAGCTGAGCCAACTCCAA 59.526 50.000 0.00 0.00 42.74 3.53
3544 3615 0.250467 GTTGAGCTGAGCCAACTCCA 60.250 55.000 22.76 3.29 42.74 3.86
3545 3616 0.036022 AGTTGAGCTGAGCCAACTCC 59.964 55.000 25.34 9.70 42.04 3.85
3546 3617 3.621953 AGTTGAGCTGAGCCAACTC 57.378 52.632 25.34 9.38 42.04 3.01
3547 3618 0.761187 TGAGTTGAGCTGAGCCAACT 59.239 50.000 28.74 28.74 45.33 3.16
3548 3619 1.818642 ATGAGTTGAGCTGAGCCAAC 58.181 50.000 22.65 22.65 38.78 3.77
3549 3620 3.198417 TCATATGAGTTGAGCTGAGCCAA 59.802 43.478 0.00 2.22 0.00 4.52
3550 3621 2.767960 TCATATGAGTTGAGCTGAGCCA 59.232 45.455 0.00 0.00 0.00 4.75
3551 3622 3.465742 TCATATGAGTTGAGCTGAGCC 57.534 47.619 0.00 0.00 0.00 4.70
3552 3623 5.808042 TTTTCATATGAGTTGAGCTGAGC 57.192 39.130 5.39 0.00 0.00 4.26
3553 3624 7.010830 TCGAATTTTCATATGAGTTGAGCTGAG 59.989 37.037 5.39 0.00 0.00 3.35
3554 3625 6.818142 TCGAATTTTCATATGAGTTGAGCTGA 59.182 34.615 5.39 0.00 0.00 4.26
3555 3626 7.008440 TCGAATTTTCATATGAGTTGAGCTG 57.992 36.000 5.39 0.00 0.00 4.24
3556 3627 6.238320 GCTCGAATTTTCATATGAGTTGAGCT 60.238 38.462 25.08 0.00 40.43 4.09
3557 3628 5.906285 GCTCGAATTTTCATATGAGTTGAGC 59.094 40.000 21.72 21.72 37.41 4.26
3558 3629 6.019559 TCGCTCGAATTTTCATATGAGTTGAG 60.020 38.462 5.39 11.53 0.00 3.02
3559 3630 5.810074 TCGCTCGAATTTTCATATGAGTTGA 59.190 36.000 5.39 2.35 0.00 3.18
3560 3631 6.036246 TCGCTCGAATTTTCATATGAGTTG 57.964 37.500 5.39 0.00 0.00 3.16
3561 3632 5.277058 GCTCGCTCGAATTTTCATATGAGTT 60.277 40.000 5.39 2.94 0.00 3.01
3562 3633 4.210120 GCTCGCTCGAATTTTCATATGAGT 59.790 41.667 5.39 0.00 0.00 3.41
3563 3634 4.447054 AGCTCGCTCGAATTTTCATATGAG 59.553 41.667 5.39 0.00 0.00 2.90
3564 3635 4.371786 AGCTCGCTCGAATTTTCATATGA 58.628 39.130 0.00 0.00 0.00 2.15
3565 3636 4.209911 TGAGCTCGCTCGAATTTTCATATG 59.790 41.667 9.64 0.00 45.48 1.78
3566 3637 4.371786 TGAGCTCGCTCGAATTTTCATAT 58.628 39.130 9.64 0.00 45.48 1.78
3567 3638 3.780902 TGAGCTCGCTCGAATTTTCATA 58.219 40.909 9.64 0.00 45.48 2.15
3568 3639 2.621338 TGAGCTCGCTCGAATTTTCAT 58.379 42.857 9.64 0.00 45.48 2.57
3569 3640 2.078849 TGAGCTCGCTCGAATTTTCA 57.921 45.000 9.64 0.00 45.48 2.69
3570 3641 3.120511 AGTTTGAGCTCGCTCGAATTTTC 60.121 43.478 20.94 10.68 45.11 2.29
3571 3642 2.808543 AGTTTGAGCTCGCTCGAATTTT 59.191 40.909 20.94 10.02 45.11 1.82
3572 3643 2.417719 AGTTTGAGCTCGCTCGAATTT 58.582 42.857 20.94 12.01 45.11 1.82
3573 3644 2.086054 AGTTTGAGCTCGCTCGAATT 57.914 45.000 20.94 15.57 45.11 2.17
3574 3645 2.941453 TAGTTTGAGCTCGCTCGAAT 57.059 45.000 20.94 13.69 45.11 3.34
3575 3646 2.030185 ACTTAGTTTGAGCTCGCTCGAA 60.030 45.455 15.72 15.72 45.48 3.71
3576 3647 1.540267 ACTTAGTTTGAGCTCGCTCGA 59.460 47.619 9.64 9.43 45.48 4.04
3577 3648 1.651138 CACTTAGTTTGAGCTCGCTCG 59.349 52.381 9.64 5.15 45.48 5.03
3578 3649 2.947852 TCACTTAGTTTGAGCTCGCTC 58.052 47.619 9.64 11.83 43.01 5.03
3579 3650 3.321497 CTTCACTTAGTTTGAGCTCGCT 58.679 45.455 9.64 9.64 0.00 4.93
3580 3651 2.159774 GCTTCACTTAGTTTGAGCTCGC 60.160 50.000 9.64 1.81 0.00 5.03
3581 3652 3.321497 AGCTTCACTTAGTTTGAGCTCG 58.679 45.455 9.64 0.00 0.00 5.03
3582 3653 4.310769 TGAGCTTCACTTAGTTTGAGCTC 58.689 43.478 23.19 23.19 40.68 4.09
3583 3654 4.342862 TGAGCTTCACTTAGTTTGAGCT 57.657 40.909 11.90 11.90 33.15 4.09
3584 3655 4.692625 TCATGAGCTTCACTTAGTTTGAGC 59.307 41.667 0.00 3.98 0.00 4.26
3585 3656 6.237781 CGATCATGAGCTTCACTTAGTTTGAG 60.238 42.308 9.64 0.00 0.00 3.02
3586 3657 5.578336 CGATCATGAGCTTCACTTAGTTTGA 59.422 40.000 9.64 0.00 0.00 2.69
3587 3658 5.578336 TCGATCATGAGCTTCACTTAGTTTG 59.422 40.000 9.64 0.00 0.00 2.93
3588 3659 5.724328 TCGATCATGAGCTTCACTTAGTTT 58.276 37.500 9.64 0.00 0.00 2.66
3589 3660 5.330455 TCGATCATGAGCTTCACTTAGTT 57.670 39.130 9.64 0.00 0.00 2.24
3590 3661 4.930963 CTCGATCATGAGCTTCACTTAGT 58.069 43.478 9.64 0.00 0.00 2.24
3601 3672 6.746822 GTCATATTCTACAGCTCGATCATGAG 59.253 42.308 0.09 0.00 39.05 2.90
3602 3673 6.432472 AGTCATATTCTACAGCTCGATCATGA 59.568 38.462 0.00 0.00 0.00 3.07
3603 3674 6.619744 AGTCATATTCTACAGCTCGATCATG 58.380 40.000 0.00 0.00 0.00 3.07
3604 3675 6.403092 CGAGTCATATTCTACAGCTCGATCAT 60.403 42.308 5.28 0.00 44.58 2.45
3605 3676 5.106908 CGAGTCATATTCTACAGCTCGATCA 60.107 44.000 5.28 0.00 44.58 2.92
3606 3677 5.106869 ACGAGTCATATTCTACAGCTCGATC 60.107 44.000 16.19 0.00 44.58 3.69
3607 3678 4.757657 ACGAGTCATATTCTACAGCTCGAT 59.242 41.667 16.19 0.57 44.58 3.59
3608 3679 4.024809 CACGAGTCATATTCTACAGCTCGA 60.025 45.833 16.19 0.00 44.58 4.04
3609 3680 4.215201 CACGAGTCATATTCTACAGCTCG 58.785 47.826 9.10 9.10 46.37 5.03
3610 3681 3.978217 GCACGAGTCATATTCTACAGCTC 59.022 47.826 0.00 0.00 0.00 4.09
3611 3682 3.634448 AGCACGAGTCATATTCTACAGCT 59.366 43.478 0.00 0.00 0.00 4.24
3612 3683 3.971150 AGCACGAGTCATATTCTACAGC 58.029 45.455 0.00 0.00 0.00 4.40
3613 3684 5.175090 TGAGCACGAGTCATATTCTACAG 57.825 43.478 0.00 0.00 0.00 2.74
3614 3685 4.498177 GCTGAGCACGAGTCATATTCTACA 60.498 45.833 0.00 0.00 0.00 2.74
3615 3686 3.978217 GCTGAGCACGAGTCATATTCTAC 59.022 47.826 0.00 0.00 0.00 2.59
3616 3687 3.885901 AGCTGAGCACGAGTCATATTCTA 59.114 43.478 7.39 0.00 0.00 2.10
3617 3688 2.692557 AGCTGAGCACGAGTCATATTCT 59.307 45.455 7.39 0.00 0.00 2.40
3618 3689 3.090952 AGCTGAGCACGAGTCATATTC 57.909 47.619 7.39 0.00 0.00 1.75
3619 3690 3.193263 CAAGCTGAGCACGAGTCATATT 58.807 45.455 7.39 0.00 0.00 1.28
3620 3691 2.167281 ACAAGCTGAGCACGAGTCATAT 59.833 45.455 7.39 0.00 0.00 1.78
3621 3692 1.546029 ACAAGCTGAGCACGAGTCATA 59.454 47.619 7.39 0.00 0.00 2.15
3622 3693 0.319728 ACAAGCTGAGCACGAGTCAT 59.680 50.000 7.39 0.00 0.00 3.06
3623 3694 0.958822 TACAAGCTGAGCACGAGTCA 59.041 50.000 7.39 0.00 0.00 3.41
3624 3695 1.721926 GTTACAAGCTGAGCACGAGTC 59.278 52.381 7.39 0.00 0.00 3.36
3625 3696 1.784525 GTTACAAGCTGAGCACGAGT 58.215 50.000 7.39 1.63 0.00 4.18
3626 3697 0.710567 CGTTACAAGCTGAGCACGAG 59.289 55.000 7.39 0.00 0.00 4.18
3627 3698 0.312729 TCGTTACAAGCTGAGCACGA 59.687 50.000 12.04 12.04 34.45 4.35
3628 3699 1.321743 GATCGTTACAAGCTGAGCACG 59.678 52.381 7.39 7.63 0.00 5.34
3629 3700 2.600867 GAGATCGTTACAAGCTGAGCAC 59.399 50.000 7.39 0.00 0.00 4.40
3630 3701 2.732282 CGAGATCGTTACAAGCTGAGCA 60.732 50.000 7.39 0.00 34.11 4.26
3631 3702 1.849219 CGAGATCGTTACAAGCTGAGC 59.151 52.381 0.00 0.00 34.11 4.26
3632 3703 3.181505 ACTCGAGATCGTTACAAGCTGAG 60.182 47.826 21.68 0.00 40.80 3.35
3633 3704 2.747989 ACTCGAGATCGTTACAAGCTGA 59.252 45.455 21.68 0.00 40.80 4.26
3634 3705 3.102276 GACTCGAGATCGTTACAAGCTG 58.898 50.000 21.68 0.00 40.80 4.24
3635 3706 2.223066 CGACTCGAGATCGTTACAAGCT 60.223 50.000 21.68 0.00 40.80 3.74
3636 3707 2.102633 CGACTCGAGATCGTTACAAGC 58.897 52.381 21.68 0.00 40.80 4.01
3637 3708 3.653256 TCGACTCGAGATCGTTACAAG 57.347 47.619 25.67 7.14 40.50 3.16
3638 3709 3.869832 AGATCGACTCGAGATCGTTACAA 59.130 43.478 25.67 13.89 46.60 2.41
3639 3710 3.455327 AGATCGACTCGAGATCGTTACA 58.545 45.455 25.67 14.16 46.60 2.41
3640 3711 4.025896 TCAAGATCGACTCGAGATCGTTAC 60.026 45.833 25.67 19.74 46.60 2.50
3641 3712 4.117685 TCAAGATCGACTCGAGATCGTTA 58.882 43.478 25.67 14.92 46.60 3.18
3642 3713 2.937149 TCAAGATCGACTCGAGATCGTT 59.063 45.455 25.67 20.86 46.60 3.85
3643 3714 2.542178 CTCAAGATCGACTCGAGATCGT 59.458 50.000 25.67 17.68 46.60 3.73
3644 3715 2.661709 GCTCAAGATCGACTCGAGATCG 60.662 54.545 21.68 22.48 46.60 3.69
3645 3716 2.548057 AGCTCAAGATCGACTCGAGATC 59.452 50.000 21.68 12.17 43.48 2.75
3646 3717 2.571212 AGCTCAAGATCGACTCGAGAT 58.429 47.619 21.68 1.65 39.91 2.75
3647 3718 2.031258 AGCTCAAGATCGACTCGAGA 57.969 50.000 21.68 0.00 39.91 4.04
3648 3719 2.869801 ACTAGCTCAAGATCGACTCGAG 59.130 50.000 11.84 11.84 39.91 4.04
3649 3720 2.907634 ACTAGCTCAAGATCGACTCGA 58.092 47.619 3.06 3.06 41.13 4.04
3650 3721 3.684103 AACTAGCTCAAGATCGACTCG 57.316 47.619 0.00 0.00 0.00 4.18
3651 3722 4.032355 CGAAACTAGCTCAAGATCGACTC 58.968 47.826 0.00 0.00 33.97 3.36
3652 3723 3.690139 TCGAAACTAGCTCAAGATCGACT 59.310 43.478 12.09 0.00 35.27 4.18
3653 3724 4.017380 TCGAAACTAGCTCAAGATCGAC 57.983 45.455 12.09 0.00 35.27 4.20
3654 3725 3.487711 GCTCGAAACTAGCTCAAGATCGA 60.488 47.826 14.10 14.10 36.65 3.59
3655 3726 2.786578 GCTCGAAACTAGCTCAAGATCG 59.213 50.000 0.00 0.00 37.01 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.