Multiple sequence alignment - TraesCS2A01G462300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G462300 chr2A 100.000 3440 0 0 1 3440 707987216 707990655 0.000000e+00 6353.0
1 TraesCS2A01G462300 chr2A 81.254 1419 206 31 1033 2421 763334033 763332645 0.000000e+00 1092.0
2 TraesCS2A01G462300 chr2A 76.453 344 69 8 2019 2357 3832973 3833309 3.530000e-40 176.0
3 TraesCS2A01G462300 chr2D 95.538 1681 54 4 893 2557 568409032 568410707 0.000000e+00 2669.0
4 TraesCS2A01G462300 chr2D 94.518 1587 74 8 943 2518 568726229 568727813 0.000000e+00 2436.0
5 TraesCS2A01G462300 chr2D 87.041 517 53 8 172 676 568407565 568408079 3.850000e-159 571.0
6 TraesCS2A01G462300 chr2D 86.047 516 58 8 172 676 568721073 568721585 3.020000e-150 542.0
7 TraesCS2A01G462300 chr2D 81.629 626 83 16 69 676 100753438 100752827 1.110000e-134 490.0
8 TraesCS2A01G462300 chr2D 90.333 300 17 6 2550 2847 568411205 568411494 1.940000e-102 383.0
9 TraesCS2A01G462300 chr2D 75.163 769 156 26 1633 2373 5267865 5268626 2.560000e-86 329.0
10 TraesCS2A01G462300 chr2D 100.000 72 0 0 832 903 568408916 568408987 2.150000e-27 134.0
11 TraesCS2A01G462300 chr2D 100.000 72 0 0 832 903 568726046 568726117 2.150000e-27 134.0
12 TraesCS2A01G462300 chr2B 92.537 1876 92 21 677 2519 681217594 681219454 0.000000e+00 2645.0
13 TraesCS2A01G462300 chr2B 82.011 1412 204 28 1033 2422 797539241 797537858 0.000000e+00 1155.0
14 TraesCS2A01G462300 chr2B 82.642 1181 180 16 1255 2423 797671999 797673166 0.000000e+00 1022.0
15 TraesCS2A01G462300 chr2B 85.528 843 107 9 1896 2733 681221403 681222235 0.000000e+00 867.0
16 TraesCS2A01G462300 chr2B 85.880 517 60 6 172 676 681216050 681216565 3.910000e-149 538.0
17 TraesCS2A01G462300 chr2B 74.611 772 158 28 1633 2373 6179317 6180081 4.310000e-79 305.0
18 TraesCS2A01G462300 chr5D 79.244 1402 211 45 1026 2376 513663505 513662133 0.000000e+00 904.0
19 TraesCS2A01G462300 chr5D 78.947 304 49 7 344 635 228267247 228266947 3.500000e-45 193.0
20 TraesCS2A01G462300 chr5D 84.483 174 24 3 452 624 30973831 30974002 5.900000e-38 169.0
21 TraesCS2A01G462300 chr7D 96.086 511 19 1 2843 3353 10976661 10976152 0.000000e+00 832.0
22 TraesCS2A01G462300 chr5B 94.369 515 27 2 2843 3356 490742413 490742926 0.000000e+00 789.0
23 TraesCS2A01G462300 chr5B 84.211 95 15 0 3169 3263 517779946 517779852 3.660000e-15 93.5
24 TraesCS2A01G462300 chr5A 80.374 642 77 22 72 676 618369083 618369712 3.150000e-120 442.0
25 TraesCS2A01G462300 chr5A 83.158 95 16 0 3169 3263 43251146 43251240 1.700000e-13 87.9
26 TraesCS2A01G462300 chr3B 80.702 627 72 22 94 676 579747992 579748613 3.150000e-120 442.0
27 TraesCS2A01G462300 chr3B 95.152 165 8 0 3188 3352 10217977 10217813 9.470000e-66 261.0
28 TraesCS2A01G462300 chr7A 80.325 615 81 21 97 676 577767784 577767175 2.450000e-116 429.0
29 TraesCS2A01G462300 chr3A 79.470 604 88 21 97 676 620520550 620519959 2.490000e-106 396.0
30 TraesCS2A01G462300 chr3A 78.589 397 67 12 277 658 487478398 487478791 2.650000e-61 246.0
31 TraesCS2A01G462300 chr7B 79.124 388 63 9 283 656 592337271 592336888 5.700000e-63 252.0
32 TraesCS2A01G462300 chr7B 84.211 95 15 0 3169 3263 465593867 465593773 3.660000e-15 93.5
33 TraesCS2A01G462300 chr4A 77.829 433 54 20 193 588 586855244 586854817 2.670000e-56 230.0
34 TraesCS2A01G462300 chr4A 74.870 386 80 12 289 661 80218304 80217923 3.550000e-35 159.0
35 TraesCS2A01G462300 chr6B 80.731 301 44 8 335 623 630592476 630592774 4.470000e-54 222.0
36 TraesCS2A01G462300 chr6A 76.684 386 78 6 283 657 143092441 143092825 1.620000e-48 204.0
37 TraesCS2A01G462300 chr4B 78.042 337 56 10 336 658 450912558 450912890 2.710000e-46 196.0
38 TraesCS2A01G462300 chr4D 78.523 298 48 8 374 658 366320938 366321232 7.580000e-42 182.0
39 TraesCS2A01G462300 chr6D 77.815 302 47 11 371 657 55922275 55922571 5.900000e-38 169.0
40 TraesCS2A01G462300 chr3D 82.353 85 13 2 677 760 346924322 346924405 4.760000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G462300 chr2A 707987216 707990655 3439 False 6353.00 6353 100.000000 1 3440 1 chr2A.!!$F2 3439
1 TraesCS2A01G462300 chr2A 763332645 763334033 1388 True 1092.00 1092 81.254000 1033 2421 1 chr2A.!!$R1 1388
2 TraesCS2A01G462300 chr2D 568726046 568727813 1767 False 1285.00 2436 97.259000 832 2518 2 chr2D.!!$F4 1686
3 TraesCS2A01G462300 chr2D 568407565 568411494 3929 False 939.25 2669 93.228000 172 2847 4 chr2D.!!$F3 2675
4 TraesCS2A01G462300 chr2D 568721073 568721585 512 False 542.00 542 86.047000 172 676 1 chr2D.!!$F2 504
5 TraesCS2A01G462300 chr2D 100752827 100753438 611 True 490.00 490 81.629000 69 676 1 chr2D.!!$R1 607
6 TraesCS2A01G462300 chr2D 5267865 5268626 761 False 329.00 329 75.163000 1633 2373 1 chr2D.!!$F1 740
7 TraesCS2A01G462300 chr2B 681216050 681222235 6185 False 1350.00 2645 87.981667 172 2733 3 chr2B.!!$F3 2561
8 TraesCS2A01G462300 chr2B 797537858 797539241 1383 True 1155.00 1155 82.011000 1033 2422 1 chr2B.!!$R1 1389
9 TraesCS2A01G462300 chr2B 797671999 797673166 1167 False 1022.00 1022 82.642000 1255 2423 1 chr2B.!!$F2 1168
10 TraesCS2A01G462300 chr2B 6179317 6180081 764 False 305.00 305 74.611000 1633 2373 1 chr2B.!!$F1 740
11 TraesCS2A01G462300 chr5D 513662133 513663505 1372 True 904.00 904 79.244000 1026 2376 1 chr5D.!!$R2 1350
12 TraesCS2A01G462300 chr7D 10976152 10976661 509 True 832.00 832 96.086000 2843 3353 1 chr7D.!!$R1 510
13 TraesCS2A01G462300 chr5B 490742413 490742926 513 False 789.00 789 94.369000 2843 3356 1 chr5B.!!$F1 513
14 TraesCS2A01G462300 chr5A 618369083 618369712 629 False 442.00 442 80.374000 72 676 1 chr5A.!!$F2 604
15 TraesCS2A01G462300 chr3B 579747992 579748613 621 False 442.00 442 80.702000 94 676 1 chr3B.!!$F1 582
16 TraesCS2A01G462300 chr7A 577767175 577767784 609 True 429.00 429 80.325000 97 676 1 chr7A.!!$R1 579
17 TraesCS2A01G462300 chr3A 620519959 620520550 591 True 396.00 396 79.470000 97 676 1 chr3A.!!$R1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.033011 AGGTCGGCTAGAGACACCAT 60.033 55.0 16.96 1.99 40.20 3.55 F
696 1780 0.037326 TGTCCTGCTGAACGTGATCC 60.037 55.0 0.00 0.00 0.00 3.36 F
716 1800 0.902531 AGTGGTCCAGAATACACCGG 59.097 55.0 0.00 0.00 34.50 5.28 F
2234 3479 1.109323 GTGGCCATGGAAGGGTATGC 61.109 60.0 18.40 0.00 42.11 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 3336 0.603707 AGTTCCATCCGCAGTGTGTG 60.604 55.0 2.46 0.0 0.00 3.82 R
2264 3515 0.178992 CAGCCACCTGACCTTTTCCA 60.179 55.0 0.00 0.0 41.77 3.53 R
2407 3658 0.386731 CCATTGTGGTCGGCGTTTTC 60.387 55.0 6.85 0.0 31.35 2.29 R
3366 7718 0.238289 ATCCAAAGCACGAAACTGCG 59.762 50.0 0.00 0.0 42.42 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.574674 TGGAAATCCAACAGTAGCTGAT 57.425 40.909 0.00 0.00 44.35 2.90
23 24 4.922206 TGGAAATCCAACAGTAGCTGATT 58.078 39.130 0.00 0.00 44.35 2.57
24 25 5.324409 TGGAAATCCAACAGTAGCTGATTT 58.676 37.500 0.00 0.57 44.35 2.17
25 26 5.415701 TGGAAATCCAACAGTAGCTGATTTC 59.584 40.000 18.31 18.31 45.23 2.17
26 27 5.415701 GGAAATCCAACAGTAGCTGATTTCA 59.584 40.000 23.75 0.00 46.62 2.69
27 28 6.071952 GGAAATCCAACAGTAGCTGATTTCAA 60.072 38.462 23.75 0.00 46.62 2.69
28 29 7.363268 GGAAATCCAACAGTAGCTGATTTCAAT 60.363 37.037 23.75 1.03 46.62 2.57
29 30 5.885230 TCCAACAGTAGCTGATTTCAATG 57.115 39.130 0.00 0.00 35.18 2.82
30 31 4.156556 TCCAACAGTAGCTGATTTCAATGC 59.843 41.667 0.00 0.00 35.18 3.56
31 32 4.157289 CCAACAGTAGCTGATTTCAATGCT 59.843 41.667 0.00 0.00 39.30 3.79
32 33 5.336213 CCAACAGTAGCTGATTTCAATGCTT 60.336 40.000 0.00 0.00 37.02 3.91
33 34 5.972107 ACAGTAGCTGATTTCAATGCTTT 57.028 34.783 0.00 0.00 37.02 3.51
34 35 6.336842 ACAGTAGCTGATTTCAATGCTTTT 57.663 33.333 0.00 0.00 37.02 2.27
35 36 6.154445 ACAGTAGCTGATTTCAATGCTTTTG 58.846 36.000 0.00 3.09 37.02 2.44
36 37 6.154445 CAGTAGCTGATTTCAATGCTTTTGT 58.846 36.000 0.00 0.00 37.02 2.83
37 38 6.089016 CAGTAGCTGATTTCAATGCTTTTGTG 59.911 38.462 0.00 0.00 37.02 3.33
38 39 3.744426 AGCTGATTTCAATGCTTTTGTGC 59.256 39.130 0.00 0.00 30.96 4.57
39 40 3.120442 GCTGATTTCAATGCTTTTGTGCC 60.120 43.478 0.88 0.00 0.00 5.01
40 41 4.312443 CTGATTTCAATGCTTTTGTGCCT 58.688 39.130 0.88 0.00 0.00 4.75
41 42 4.309099 TGATTTCAATGCTTTTGTGCCTC 58.691 39.130 0.88 0.00 0.00 4.70
42 43 2.818130 TTCAATGCTTTTGTGCCTCC 57.182 45.000 0.88 0.00 0.00 4.30
43 44 0.597568 TCAATGCTTTTGTGCCTCCG 59.402 50.000 0.88 0.00 0.00 4.63
44 45 0.597568 CAATGCTTTTGTGCCTCCGA 59.402 50.000 0.00 0.00 0.00 4.55
45 46 0.598065 AATGCTTTTGTGCCTCCGAC 59.402 50.000 0.00 0.00 0.00 4.79
46 47 0.537143 ATGCTTTTGTGCCTCCGACA 60.537 50.000 0.00 0.00 0.00 4.35
47 48 1.165907 TGCTTTTGTGCCTCCGACAG 61.166 55.000 0.00 0.00 0.00 3.51
48 49 1.856265 GCTTTTGTGCCTCCGACAGG 61.856 60.000 0.00 0.00 46.82 4.00
49 50 0.535102 CTTTTGTGCCTCCGACAGGT 60.535 55.000 2.68 0.00 45.61 4.00
50 51 0.534203 TTTTGTGCCTCCGACAGGTC 60.534 55.000 2.68 0.00 45.61 3.85
61 62 2.869636 GACAGGTCGGCTAGAGACA 58.130 57.895 16.96 0.00 40.20 3.41
62 63 0.452585 GACAGGTCGGCTAGAGACAC 59.547 60.000 16.96 9.01 40.20 3.67
63 64 0.966370 ACAGGTCGGCTAGAGACACC 60.966 60.000 16.96 6.76 40.20 4.16
64 65 0.965866 CAGGTCGGCTAGAGACACCA 60.966 60.000 16.96 0.00 40.20 4.17
65 66 0.033011 AGGTCGGCTAGAGACACCAT 60.033 55.000 16.96 1.99 40.20 3.55
66 67 0.824759 GGTCGGCTAGAGACACCATT 59.175 55.000 16.96 0.00 40.20 3.16
67 68 1.471676 GGTCGGCTAGAGACACCATTG 60.472 57.143 16.96 0.00 40.20 2.82
106 107 0.826256 ACGACCACAGTGCTCCACTA 60.826 55.000 0.00 0.00 43.43 2.74
113 114 4.410228 ACCACAGTGCTCCACTATATCATT 59.590 41.667 0.00 0.00 43.43 2.57
138 139 1.342074 TTAGATCATGCTCGGAGGGG 58.658 55.000 7.20 0.00 0.00 4.79
274 300 9.685276 ATGTCTATATTTCCTCAAACATGTGAA 57.315 29.630 0.00 0.00 0.00 3.18
281 307 7.537596 TTTCCTCAAACATGTGAAATATGGT 57.462 32.000 0.00 0.00 36.71 3.55
300 326 2.147958 GTAATCCACTTTGGCACGTGA 58.852 47.619 22.23 0.00 37.47 4.35
401 437 1.391577 TTCTATGTGCGCATGCCAAT 58.608 45.000 22.84 5.55 41.78 3.16
408 444 2.093473 GCGCATGCCAATTTTCGCA 61.093 52.632 13.15 0.00 41.84 5.10
432 468 7.569957 GCAGAAAACTGATAATTTTTGTGGCTG 60.570 37.037 5.31 0.00 36.79 4.85
537 587 1.656429 CGAAACGACTTTGTGCGGAAG 60.656 52.381 0.00 0.00 0.00 3.46
546 597 2.270352 TTGTGCGGAAGGAGAATGTT 57.730 45.000 0.00 0.00 27.60 2.71
555 606 4.583871 GGAAGGAGAATGTTGAGATGTGT 58.416 43.478 0.00 0.00 0.00 3.72
581 632 9.039870 TGTGCGAAACATTTTATCTGAATTTTT 57.960 25.926 0.00 0.00 32.36 1.94
648 700 0.397535 ATGCTCCCCGATGCCAAAAT 60.398 50.000 0.00 0.00 0.00 1.82
696 1780 0.037326 TGTCCTGCTGAACGTGATCC 60.037 55.000 0.00 0.00 0.00 3.36
716 1800 0.902531 AGTGGTCCAGAATACACCGG 59.097 55.000 0.00 0.00 34.50 5.28
734 1818 2.328473 CGGTGCATCGTATCATCGAAT 58.672 47.619 12.24 0.00 42.99 3.34
735 1819 3.498082 CGGTGCATCGTATCATCGAATA 58.502 45.455 12.24 0.00 42.99 1.75
736 1820 3.917985 CGGTGCATCGTATCATCGAATAA 59.082 43.478 12.24 0.00 42.99 1.40
764 1848 1.474478 CACCAGATACGCTCTCACACT 59.526 52.381 0.00 0.00 29.16 3.55
773 1857 1.402259 CGCTCTCACACTATTCGGAGT 59.598 52.381 0.00 0.00 0.00 3.85
820 1904 9.410556 ACGAAAACAAATTGATATTCTTTGGAG 57.589 29.630 0.00 0.00 34.86 3.86
821 1905 9.410556 CGAAAACAAATTGATATTCTTTGGAGT 57.589 29.630 0.00 0.00 34.86 3.85
829 1913 7.452880 TTGATATTCTTTGGAGTTTGGACAG 57.547 36.000 0.00 0.00 0.00 3.51
905 2044 2.187946 GGATGGGTGGACGAGCAG 59.812 66.667 0.00 0.00 0.00 4.24
956 2113 1.687494 CCTTTAGCACGACGAGCAGC 61.687 60.000 19.27 8.83 0.00 5.25
974 2138 1.937546 GCCATCAGGAAACGCAAGGG 61.938 60.000 0.00 0.00 38.72 3.95
1313 2495 3.400054 CTCCAACCCGGACCTCCC 61.400 72.222 0.73 0.00 39.64 4.30
1608 2790 2.175878 TGAGCAGCAAGTTCTTCCTC 57.824 50.000 0.00 0.00 0.00 3.71
2131 3376 4.783621 TGCTGGAGGCGGTCATGC 62.784 66.667 0.00 0.00 45.43 4.06
2234 3479 1.109323 GTGGCCATGGAAGGGTATGC 61.109 60.000 18.40 0.00 42.11 3.14
2252 3503 1.969923 TGCCAAAGAAATGGTGGAAGG 59.030 47.619 0.00 0.00 42.75 3.46
2297 3548 1.134699 GTGGCTGATTGAGTCCGATGA 60.135 52.381 0.00 0.00 0.00 2.92
2407 3658 3.322466 ACCTTGCGAGAGGGTGGG 61.322 66.667 1.22 0.00 41.31 4.61
2549 6392 9.846248 ATTCAAGCTTTACTGTTCATGTATTTC 57.154 29.630 0.00 0.00 0.00 2.17
2604 6954 5.556355 TTTTGCATGCAAAATCAACACAA 57.444 30.435 40.87 24.12 46.80 3.33
2608 6958 3.747010 GCATGCAAAATCAACACAATGGA 59.253 39.130 14.21 0.00 0.00 3.41
2611 6961 2.730928 GCAAAATCAACACAATGGACCG 59.269 45.455 0.00 0.00 0.00 4.79
2612 6962 3.316283 CAAAATCAACACAATGGACCGG 58.684 45.455 0.00 0.00 0.00 5.28
2613 6963 1.544724 AATCAACACAATGGACCGGG 58.455 50.000 6.32 0.00 0.00 5.73
2614 6964 0.404040 ATCAACACAATGGACCGGGT 59.596 50.000 6.32 0.00 0.00 5.28
2660 7012 1.755200 GGCCCTCATTCCCCCTATTA 58.245 55.000 0.00 0.00 0.00 0.98
2664 7016 3.060611 CCCTCATTCCCCCTATTACCAA 58.939 50.000 0.00 0.00 0.00 3.67
2665 7017 3.662642 CCCTCATTCCCCCTATTACCAAT 59.337 47.826 0.00 0.00 0.00 3.16
2666 7018 4.263949 CCCTCATTCCCCCTATTACCAATC 60.264 50.000 0.00 0.00 0.00 2.67
2667 7019 4.263949 CCTCATTCCCCCTATTACCAATCC 60.264 50.000 0.00 0.00 0.00 3.01
2701 7053 5.121142 TGCTAACTGGCTAATCACGTAAAAC 59.879 40.000 0.00 0.00 0.00 2.43
2789 7141 4.647424 TTGAAACAATGGACACCTTGTC 57.353 40.909 0.00 0.00 46.23 3.18
2804 7156 5.051816 CACCTTGTCGGTTACAGTAAAGAA 58.948 41.667 0.00 0.00 46.37 2.52
2809 7161 6.548441 TGTCGGTTACAGTAAAGAAATTGG 57.452 37.500 0.00 0.00 33.01 3.16
2815 7167 7.241376 GGTTACAGTAAAGAAATTGGTGATCG 58.759 38.462 0.00 0.00 0.00 3.69
2839 7191 7.324375 TCGTAACTGAGTTTTACACATTACTCG 59.676 37.037 1.97 0.00 39.83 4.18
2885 7237 8.801882 AAAACTGAATACGGATGGATCTTTTA 57.198 30.769 0.00 0.00 0.00 1.52
2890 7242 8.378172 TGAATACGGATGGATCTTTTATGAAC 57.622 34.615 0.00 0.00 0.00 3.18
2903 7255 2.689553 TATGAACAGCAATGAGGCGA 57.310 45.000 0.00 0.00 39.27 5.54
2908 7260 3.406200 AGCAATGAGGCGAGGGCT 61.406 61.111 0.00 0.00 42.48 5.19
2991 7343 3.710722 CAGGGAAGCGCTGGAGGT 61.711 66.667 12.58 0.00 40.11 3.85
3011 7363 2.684374 GTGGAGTTATGTGCATGCATGA 59.316 45.455 30.64 14.32 0.00 3.07
3061 7413 0.700564 AGCTTCCCATTGAGCTGGAA 59.299 50.000 0.00 0.00 38.69 3.53
3082 7434 2.314647 GGACGCGCAAGTTGCTGTA 61.315 57.895 24.61 0.00 42.25 2.74
3092 7444 4.143452 CGCAAGTTGCTGTATCTATGATCG 60.143 45.833 24.61 1.00 42.25 3.69
3096 7448 7.755373 GCAAGTTGCTGTATCTATGATCGTATA 59.245 37.037 20.71 0.00 40.96 1.47
3105 7457 9.868160 TGTATCTATGATCGTATATGAGGGAAT 57.132 33.333 0.41 0.00 0.00 3.01
3108 7460 8.011844 TCTATGATCGTATATGAGGGAATTGG 57.988 38.462 0.41 0.00 0.00 3.16
3163 7515 9.429359 GAGATTAGACATCTTTTTGAGTCTTCA 57.571 33.333 0.00 0.00 41.27 3.02
3271 7623 3.403624 CTGGCTAGGTTCCAGGCA 58.596 61.111 6.93 13.35 45.62 4.75
3276 7628 2.284331 TAGGTTCCAGGCAGCCGA 60.284 61.111 5.55 0.00 0.00 5.54
3307 7659 5.928264 TGGTTATCTCGCATGATGATTGTAG 59.072 40.000 0.00 0.00 0.00 2.74
3377 7729 4.430423 GCTCGCCGCAGTTTCGTG 62.430 66.667 0.00 0.00 38.92 4.35
3378 7730 4.430423 CTCGCCGCAGTTTCGTGC 62.430 66.667 0.00 0.00 40.29 5.34
3379 7731 4.961511 TCGCCGCAGTTTCGTGCT 62.962 61.111 0.00 0.00 41.62 4.40
3380 7732 4.012895 CGCCGCAGTTTCGTGCTT 62.013 61.111 0.00 0.00 41.62 3.91
3381 7733 2.331451 GCCGCAGTTTCGTGCTTT 59.669 55.556 0.00 0.00 41.62 3.51
3382 7734 2.010817 GCCGCAGTTTCGTGCTTTG 61.011 57.895 0.00 0.00 41.62 2.77
3383 7735 1.370414 CCGCAGTTTCGTGCTTTGG 60.370 57.895 0.00 0.00 41.62 3.28
3384 7736 1.646540 CGCAGTTTCGTGCTTTGGA 59.353 52.632 0.00 0.00 41.62 3.53
3385 7737 0.238289 CGCAGTTTCGTGCTTTGGAT 59.762 50.000 0.00 0.00 41.62 3.41
3386 7738 1.689959 GCAGTTTCGTGCTTTGGATG 58.310 50.000 0.00 0.00 40.54 3.51
3387 7739 1.266718 GCAGTTTCGTGCTTTGGATGA 59.733 47.619 0.00 0.00 40.54 2.92
3388 7740 2.918131 GCAGTTTCGTGCTTTGGATGAC 60.918 50.000 0.00 0.00 40.54 3.06
3389 7741 2.549754 CAGTTTCGTGCTTTGGATGACT 59.450 45.455 0.00 0.00 0.00 3.41
3390 7742 2.808543 AGTTTCGTGCTTTGGATGACTC 59.191 45.455 0.00 0.00 0.00 3.36
3391 7743 1.428448 TTCGTGCTTTGGATGACTCG 58.572 50.000 0.00 0.00 0.00 4.18
3392 7744 1.014044 TCGTGCTTTGGATGACTCGC 61.014 55.000 0.00 0.00 0.00 5.03
3393 7745 1.796796 GTGCTTTGGATGACTCGCC 59.203 57.895 0.00 0.00 0.00 5.54
3394 7746 0.674895 GTGCTTTGGATGACTCGCCT 60.675 55.000 0.00 0.00 0.00 5.52
3395 7747 0.391661 TGCTTTGGATGACTCGCCTC 60.392 55.000 0.00 0.00 0.00 4.70
3396 7748 0.391661 GCTTTGGATGACTCGCCTCA 60.392 55.000 0.00 0.00 0.00 3.86
3397 7749 1.945819 GCTTTGGATGACTCGCCTCAA 60.946 52.381 0.00 0.00 0.00 3.02
3398 7750 2.005451 CTTTGGATGACTCGCCTCAAG 58.995 52.381 0.00 0.00 0.00 3.02
3399 7751 0.976641 TTGGATGACTCGCCTCAAGT 59.023 50.000 0.00 0.00 0.00 3.16
3400 7752 0.532573 TGGATGACTCGCCTCAAGTC 59.467 55.000 0.00 0.00 42.83 3.01
3401 7753 0.820871 GGATGACTCGCCTCAAGTCT 59.179 55.000 5.03 0.00 42.93 3.24
3402 7754 1.470632 GGATGACTCGCCTCAAGTCTG 60.471 57.143 5.03 0.00 42.93 3.51
3403 7755 1.474478 GATGACTCGCCTCAAGTCTGA 59.526 52.381 5.03 0.00 42.93 3.27
3404 7756 0.598562 TGACTCGCCTCAAGTCTGAC 59.401 55.000 0.00 0.00 42.93 3.51
3405 7757 0.455295 GACTCGCCTCAAGTCTGACG 60.455 60.000 1.52 0.00 40.03 4.35
3406 7758 1.803519 CTCGCCTCAAGTCTGACGC 60.804 63.158 1.52 0.00 32.18 5.19
3407 7759 2.206515 CTCGCCTCAAGTCTGACGCT 62.207 60.000 1.52 0.00 33.04 5.07
3408 7760 1.803519 CGCCTCAAGTCTGACGCTC 60.804 63.158 1.52 0.00 33.04 5.03
3409 7761 1.446966 GCCTCAAGTCTGACGCTCC 60.447 63.158 1.52 0.00 32.62 4.70
3410 7762 1.153939 CCTCAAGTCTGACGCTCCG 60.154 63.158 1.52 0.00 0.00 4.63
3411 7763 1.803519 CTCAAGTCTGACGCTCCGC 60.804 63.158 1.52 0.00 0.00 5.54
3412 7764 2.811317 CAAGTCTGACGCTCCGCC 60.811 66.667 1.52 0.00 0.00 6.13
3413 7765 2.992114 AAGTCTGACGCTCCGCCT 60.992 61.111 1.52 0.00 0.00 5.52
3414 7766 2.995872 AAGTCTGACGCTCCGCCTC 61.996 63.158 1.52 0.00 0.00 4.70
3415 7767 4.500116 GTCTGACGCTCCGCCTCC 62.500 72.222 0.00 0.00 0.00 4.30
3432 7784 3.801997 CCGCCCCTCCAGCTTGAT 61.802 66.667 0.00 0.00 0.00 2.57
3433 7785 2.203126 CGCCCCTCCAGCTTGATC 60.203 66.667 0.00 0.00 0.00 2.92
3434 7786 2.739996 CGCCCCTCCAGCTTGATCT 61.740 63.158 0.00 0.00 0.00 2.75
3435 7787 1.611965 GCCCCTCCAGCTTGATCTT 59.388 57.895 0.00 0.00 0.00 2.40
3436 7788 0.839946 GCCCCTCCAGCTTGATCTTA 59.160 55.000 0.00 0.00 0.00 2.10
3437 7789 1.212935 GCCCCTCCAGCTTGATCTTAA 59.787 52.381 0.00 0.00 0.00 1.85
3438 7790 2.924421 CCCCTCCAGCTTGATCTTAAC 58.076 52.381 0.00 0.00 0.00 2.01
3439 7791 2.239654 CCCCTCCAGCTTGATCTTAACA 59.760 50.000 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.415701 TGAAATCAGCTACTGTTGGATTTCC 59.584 40.000 21.39 10.70 34.42 3.13
4 5 6.899393 TTGAAATCAGCTACTGTTGGATTT 57.101 33.333 5.82 5.82 32.61 2.17
7 8 4.156556 GCATTGAAATCAGCTACTGTTGGA 59.843 41.667 0.00 0.00 32.61 3.53
8 9 4.157289 AGCATTGAAATCAGCTACTGTTGG 59.843 41.667 0.00 0.00 35.19 3.77
9 10 5.306532 AGCATTGAAATCAGCTACTGTTG 57.693 39.130 0.00 0.00 35.19 3.33
11 12 5.972107 AAAGCATTGAAATCAGCTACTGT 57.028 34.783 0.00 0.00 36.07 3.55
13 14 6.154445 CACAAAAGCATTGAAATCAGCTACT 58.846 36.000 9.00 0.00 36.07 2.57
15 16 4.925054 GCACAAAAGCATTGAAATCAGCTA 59.075 37.500 9.00 0.00 36.07 3.32
16 17 3.744426 GCACAAAAGCATTGAAATCAGCT 59.256 39.130 9.00 0.00 39.37 4.24
17 18 3.120442 GGCACAAAAGCATTGAAATCAGC 60.120 43.478 9.00 0.00 35.83 4.26
18 19 4.312443 AGGCACAAAAGCATTGAAATCAG 58.688 39.130 9.00 0.00 35.83 2.90
19 20 4.309099 GAGGCACAAAAGCATTGAAATCA 58.691 39.130 9.00 0.00 35.83 2.57
20 21 3.681417 GGAGGCACAAAAGCATTGAAATC 59.319 43.478 9.00 2.56 35.83 2.17
21 22 3.667360 GGAGGCACAAAAGCATTGAAAT 58.333 40.909 9.00 0.00 35.83 2.17
22 23 2.545532 CGGAGGCACAAAAGCATTGAAA 60.546 45.455 9.00 0.00 35.83 2.69
23 24 1.000385 CGGAGGCACAAAAGCATTGAA 60.000 47.619 9.00 0.00 35.83 2.69
24 25 0.597568 CGGAGGCACAAAAGCATTGA 59.402 50.000 9.00 0.00 35.83 2.57
25 26 0.597568 TCGGAGGCACAAAAGCATTG 59.402 50.000 1.14 1.14 35.83 2.82
26 27 0.598065 GTCGGAGGCACAAAAGCATT 59.402 50.000 0.00 0.00 35.83 3.56
27 28 0.537143 TGTCGGAGGCACAAAAGCAT 60.537 50.000 0.00 0.00 36.97 3.79
28 29 1.153066 TGTCGGAGGCACAAAAGCA 60.153 52.632 0.00 0.00 36.97 3.91
29 30 1.576421 CTGTCGGAGGCACAAAAGC 59.424 57.895 0.00 0.00 36.97 3.51
30 31 2.247790 CCTGTCGGAGGCACAAAAG 58.752 57.895 0.00 0.00 36.97 2.27
31 32 4.473643 CCTGTCGGAGGCACAAAA 57.526 55.556 0.00 0.00 36.97 2.44
43 44 0.452585 GTGTCTCTAGCCGACCTGTC 59.547 60.000 8.82 0.00 0.00 3.51
44 45 0.966370 GGTGTCTCTAGCCGACCTGT 60.966 60.000 8.82 0.00 0.00 4.00
45 46 0.965866 TGGTGTCTCTAGCCGACCTG 60.966 60.000 8.82 0.00 0.00 4.00
46 47 0.033011 ATGGTGTCTCTAGCCGACCT 60.033 55.000 8.82 0.00 0.00 3.85
47 48 0.824759 AATGGTGTCTCTAGCCGACC 59.175 55.000 8.82 0.00 0.00 4.79
48 49 1.471676 CCAATGGTGTCTCTAGCCGAC 60.472 57.143 0.00 5.38 0.00 4.79
49 50 0.824109 CCAATGGTGTCTCTAGCCGA 59.176 55.000 0.00 0.00 0.00 5.54
50 51 0.179073 CCCAATGGTGTCTCTAGCCG 60.179 60.000 0.00 0.00 0.00 5.52
51 52 1.139853 CTCCCAATGGTGTCTCTAGCC 59.860 57.143 0.00 0.00 0.00 3.93
52 53 2.111384 TCTCCCAATGGTGTCTCTAGC 58.889 52.381 0.00 0.00 0.00 3.42
53 54 4.223923 ACTTTCTCCCAATGGTGTCTCTAG 59.776 45.833 0.00 0.00 0.00 2.43
54 55 4.168101 ACTTTCTCCCAATGGTGTCTCTA 58.832 43.478 0.00 0.00 0.00 2.43
55 56 2.982488 ACTTTCTCCCAATGGTGTCTCT 59.018 45.455 0.00 0.00 0.00 3.10
56 57 3.425162 ACTTTCTCCCAATGGTGTCTC 57.575 47.619 0.00 0.00 0.00 3.36
57 58 4.785376 AGATACTTTCTCCCAATGGTGTCT 59.215 41.667 0.00 0.00 0.00 3.41
58 59 4.878397 CAGATACTTTCTCCCAATGGTGTC 59.122 45.833 0.00 0.00 29.93 3.67
59 60 4.324563 CCAGATACTTTCTCCCAATGGTGT 60.325 45.833 0.00 0.00 29.93 4.16
60 61 4.202441 CCAGATACTTTCTCCCAATGGTG 58.798 47.826 0.00 0.00 29.93 4.17
61 62 3.852578 ACCAGATACTTTCTCCCAATGGT 59.147 43.478 0.00 0.00 29.93 3.55
62 63 4.080356 TCACCAGATACTTTCTCCCAATGG 60.080 45.833 0.00 0.00 29.93 3.16
63 64 5.102953 TCACCAGATACTTTCTCCCAATG 57.897 43.478 0.00 0.00 29.93 2.82
64 65 5.983333 ATCACCAGATACTTTCTCCCAAT 57.017 39.130 0.00 0.00 31.14 3.16
90 91 3.374764 TGATATAGTGGAGCACTGTGGT 58.625 45.455 12.95 12.95 45.01 4.16
91 92 4.613925 ATGATATAGTGGAGCACTGTGG 57.386 45.455 10.21 0.00 45.01 4.17
92 93 5.464722 GTGAATGATATAGTGGAGCACTGTG 59.535 44.000 2.76 2.76 45.01 3.66
93 94 5.453903 GGTGAATGATATAGTGGAGCACTGT 60.454 44.000 0.00 0.00 45.01 3.55
94 95 4.993584 GGTGAATGATATAGTGGAGCACTG 59.006 45.833 0.00 0.00 45.01 3.66
106 107 7.494952 CGAGCATGATCTAATGGTGAATGATAT 59.505 37.037 9.64 0.00 38.35 1.63
113 114 2.965147 TCCGAGCATGATCTAATGGTGA 59.035 45.455 9.64 0.00 38.35 4.02
138 139 0.457853 CACATGCACATTCAGCCTGC 60.458 55.000 0.00 0.00 31.89 4.85
207 208 1.435256 AGCCTCACACCCAGTTAAGT 58.565 50.000 0.00 0.00 0.00 2.24
278 304 1.202830 ACGTGCCAAAGTGGATTACCA 60.203 47.619 0.00 0.00 40.96 3.25
281 307 2.037902 TCTCACGTGCCAAAGTGGATTA 59.962 45.455 11.67 0.00 40.96 1.75
401 437 9.092876 ACAAAAATTATCAGTTTTCTGCGAAAA 57.907 25.926 10.89 10.89 46.59 2.29
408 444 6.930722 CCAGCCACAAAAATTATCAGTTTTCT 59.069 34.615 0.00 0.00 27.60 2.52
537 587 3.120060 GCACACACATCTCAACATTCTCC 60.120 47.826 0.00 0.00 0.00 3.71
546 597 1.946745 TGTTTCGCACACACATCTCA 58.053 45.000 0.00 0.00 0.00 3.27
555 606 8.586570 AAAATTCAGATAAAATGTTTCGCACA 57.413 26.923 0.00 0.00 40.71 4.57
624 676 2.042831 GCATCGGGGAGCATATGCC 61.043 63.158 23.96 14.86 43.38 4.40
637 689 1.039233 AGAGGGGCATTTTGGCATCG 61.039 55.000 3.39 0.00 45.76 3.84
648 700 2.600439 CATCTCACTGAGAGGGGCA 58.400 57.895 14.12 0.00 42.26 5.36
696 1780 1.405526 CCGGTGTATTCTGGACCACTG 60.406 57.143 0.00 0.00 36.02 3.66
716 1800 5.275927 CGGATTATTCGATGATACGATGCAC 60.276 44.000 0.00 0.00 41.82 4.57
753 1837 1.402259 ACTCCGAATAGTGTGAGAGCG 59.598 52.381 0.00 0.00 0.00 5.03
773 1857 6.560711 TCGTATTCAGAAACAGATGATTCGA 58.439 36.000 0.00 0.00 32.88 3.71
814 1898 1.476110 CCGACCTGTCCAAACTCCAAA 60.476 52.381 0.00 0.00 0.00 3.28
815 1899 0.107831 CCGACCTGTCCAAACTCCAA 59.892 55.000 0.00 0.00 0.00 3.53
816 1900 1.752198 CCGACCTGTCCAAACTCCA 59.248 57.895 0.00 0.00 0.00 3.86
817 1901 1.671379 GCCGACCTGTCCAAACTCC 60.671 63.158 0.00 0.00 0.00 3.85
818 1902 0.951040 CTGCCGACCTGTCCAAACTC 60.951 60.000 0.00 0.00 0.00 3.01
819 1903 1.071471 CTGCCGACCTGTCCAAACT 59.929 57.895 0.00 0.00 0.00 2.66
820 1904 2.617274 GCTGCCGACCTGTCCAAAC 61.617 63.158 0.00 0.00 0.00 2.93
821 1905 2.281484 GCTGCCGACCTGTCCAAA 60.281 61.111 0.00 0.00 0.00 3.28
829 1913 3.612247 ATGGTGTCTGCTGCCGACC 62.612 63.158 19.32 11.52 0.00 4.79
956 2113 1.315257 CCCCTTGCGTTTCCTGATGG 61.315 60.000 0.00 0.00 0.00 3.51
974 2138 0.685660 AAGTGGGAAACGACCTCTCC 59.314 55.000 0.00 0.00 40.37 3.71
2091 3336 0.603707 AGTTCCATCCGCAGTGTGTG 60.604 55.000 2.46 0.00 0.00 3.82
2234 3479 1.276138 GGCCTTCCACCATTTCTTTGG 59.724 52.381 0.00 0.00 42.82 3.28
2252 3503 0.895559 CTTTTCCACCACCTCCTGGC 60.896 60.000 0.00 0.00 45.32 4.85
2264 3515 0.178992 CAGCCACCTGACCTTTTCCA 60.179 55.000 0.00 0.00 41.77 3.53
2402 3653 3.359523 GGTCGGCGTTTTCCCACC 61.360 66.667 6.85 0.50 0.00 4.61
2407 3658 0.386731 CCATTGTGGTCGGCGTTTTC 60.387 55.000 6.85 0.00 31.35 2.29
2611 6961 1.693103 AATTCGGGGAGGAGGACCC 60.693 63.158 0.00 0.00 46.05 4.46
2612 6962 0.981277 TGAATTCGGGGAGGAGGACC 60.981 60.000 0.04 0.00 0.00 4.46
2613 6963 0.909623 TTGAATTCGGGGAGGAGGAC 59.090 55.000 0.04 0.00 0.00 3.85
2614 6964 0.909623 GTTGAATTCGGGGAGGAGGA 59.090 55.000 0.04 0.00 0.00 3.71
2648 6998 4.925734 TGATGGATTGGTAATAGGGGGAAT 59.074 41.667 0.00 0.00 0.00 3.01
2660 7012 5.481473 AGTTAGCAAATTGTGATGGATTGGT 59.519 36.000 0.00 0.00 35.98 3.67
2664 7016 4.142093 GCCAGTTAGCAAATTGTGATGGAT 60.142 41.667 8.31 0.00 0.00 3.41
2665 7017 3.193267 GCCAGTTAGCAAATTGTGATGGA 59.807 43.478 8.31 0.00 0.00 3.41
2666 7018 3.194116 AGCCAGTTAGCAAATTGTGATGG 59.806 43.478 0.00 0.00 34.23 3.51
2667 7019 4.445452 AGCCAGTTAGCAAATTGTGATG 57.555 40.909 0.00 0.00 34.23 3.07
2766 7118 5.600696 GACAAGGTGTCCATTGTTTCAAAT 58.399 37.500 0.00 0.00 41.37 2.32
2789 7141 6.548441 TCACCAATTTCTTTACTGTAACCG 57.452 37.500 0.00 0.00 0.00 4.44
2790 7142 7.094933 ACGATCACCAATTTCTTTACTGTAACC 60.095 37.037 0.00 0.00 0.00 2.85
2804 7156 6.877611 AAAACTCAGTTACGATCACCAATT 57.122 33.333 0.00 0.00 0.00 2.32
2809 7161 6.758593 TGTGTAAAACTCAGTTACGATCAC 57.241 37.500 0.00 0.00 34.75 3.06
2815 7167 7.225397 GCGAGTAATGTGTAAAACTCAGTTAC 58.775 38.462 0.00 0.00 38.60 2.50
2839 7191 1.471829 CCCAACCTTCCTTTGGTGGC 61.472 60.000 0.68 0.00 41.87 5.01
2885 7237 1.376543 CTCGCCTCATTGCTGTTCAT 58.623 50.000 0.00 0.00 0.00 2.57
2890 7242 3.207669 GCCCTCGCCTCATTGCTG 61.208 66.667 0.00 0.00 0.00 4.41
2903 7255 1.561542 ACGAAGAATCATTCCAGCCCT 59.438 47.619 0.00 0.00 0.00 5.19
2908 7260 7.227314 CCTTGATCATTACGAAGAATCATTCCA 59.773 37.037 0.00 0.00 0.00 3.53
2991 7343 3.002038 TCATGCATGCACATAACTCCA 57.998 42.857 25.37 0.00 0.00 3.86
3011 7363 3.780294 TGTATAGCCAATGACAGACCCTT 59.220 43.478 0.00 0.00 0.00 3.95
3061 7413 2.255252 GCAACTTGCGCGTCCAAT 59.745 55.556 8.43 0.00 31.71 3.16
3082 7434 8.646004 CCAATTCCCTCATATACGATCATAGAT 58.354 37.037 0.00 0.00 0.00 1.98
3092 7444 6.102663 CAGATCGACCAATTCCCTCATATAC 58.897 44.000 0.00 0.00 0.00 1.47
3096 7448 2.774234 ACAGATCGACCAATTCCCTCAT 59.226 45.455 0.00 0.00 0.00 2.90
3105 7457 2.677836 GCTGCATAAACAGATCGACCAA 59.322 45.455 0.00 0.00 40.25 3.67
3108 7460 1.599542 GGGCTGCATAAACAGATCGAC 59.400 52.381 0.50 0.00 40.25 4.20
3150 7502 8.827177 ATACAAGTACGATGAAGACTCAAAAA 57.173 30.769 8.45 0.00 34.49 1.94
3220 7572 2.355818 CCCTGGCCTCTACCAAAAGTAC 60.356 54.545 3.32 0.00 39.86 2.73
3267 7619 2.348998 CAAGGTCTTCGGCTGCCT 59.651 61.111 17.92 0.00 0.00 4.75
3271 7623 2.168728 GAGATAACCAAGGTCTTCGGCT 59.831 50.000 0.00 0.00 0.00 5.52
3276 7628 3.197766 TCATGCGAGATAACCAAGGTCTT 59.802 43.478 0.00 0.00 0.00 3.01
3307 7659 7.441458 ACTTGTATTACTCAAAAGTCACAGGAC 59.559 37.037 0.00 0.00 44.66 3.85
3361 7713 4.430423 GCACGAAACTGCGGCGAG 62.430 66.667 12.98 8.03 35.12 5.03
3362 7714 4.961511 AGCACGAAACTGCGGCGA 62.962 61.111 12.98 0.00 42.42 5.54
3363 7715 3.521308 AAAGCACGAAACTGCGGCG 62.521 57.895 0.51 0.51 42.42 6.46
3364 7716 2.010817 CAAAGCACGAAACTGCGGC 61.011 57.895 0.00 0.00 42.42 6.53
3365 7717 1.370414 CCAAAGCACGAAACTGCGG 60.370 57.895 0.00 0.00 42.42 5.69
3366 7718 0.238289 ATCCAAAGCACGAAACTGCG 59.762 50.000 0.00 0.00 42.42 5.18
3367 7719 1.266718 TCATCCAAAGCACGAAACTGC 59.733 47.619 0.00 0.00 37.44 4.40
3368 7720 2.549754 AGTCATCCAAAGCACGAAACTG 59.450 45.455 0.00 0.00 0.00 3.16
3369 7721 2.808543 GAGTCATCCAAAGCACGAAACT 59.191 45.455 0.00 0.00 0.00 2.66
3370 7722 2.411547 CGAGTCATCCAAAGCACGAAAC 60.412 50.000 0.00 0.00 0.00 2.78
3371 7723 1.798223 CGAGTCATCCAAAGCACGAAA 59.202 47.619 0.00 0.00 0.00 3.46
3372 7724 1.428448 CGAGTCATCCAAAGCACGAA 58.572 50.000 0.00 0.00 0.00 3.85
3373 7725 1.014044 GCGAGTCATCCAAAGCACGA 61.014 55.000 0.00 0.00 0.00 4.35
3374 7726 1.421485 GCGAGTCATCCAAAGCACG 59.579 57.895 0.00 0.00 0.00 5.34
3375 7727 0.674895 AGGCGAGTCATCCAAAGCAC 60.675 55.000 0.00 0.00 0.00 4.40
3376 7728 0.391661 GAGGCGAGTCATCCAAAGCA 60.392 55.000 0.00 0.00 0.00 3.91
3377 7729 0.391661 TGAGGCGAGTCATCCAAAGC 60.392 55.000 0.00 0.00 0.00 3.51
3378 7730 2.005451 CTTGAGGCGAGTCATCCAAAG 58.995 52.381 0.00 1.85 0.00 2.77
3379 7731 1.347707 ACTTGAGGCGAGTCATCCAAA 59.652 47.619 0.00 0.00 0.00 3.28
3380 7732 0.976641 ACTTGAGGCGAGTCATCCAA 59.023 50.000 0.00 0.00 0.00 3.53
3381 7733 0.532573 GACTTGAGGCGAGTCATCCA 59.467 55.000 9.39 0.00 42.66 3.41
3382 7734 0.820871 AGACTTGAGGCGAGTCATCC 59.179 55.000 15.18 0.00 44.82 3.51
3383 7735 1.474478 TCAGACTTGAGGCGAGTCATC 59.526 52.381 15.18 0.00 44.82 2.92
3384 7736 1.203523 GTCAGACTTGAGGCGAGTCAT 59.796 52.381 15.18 0.90 44.82 3.06
3385 7737 0.598562 GTCAGACTTGAGGCGAGTCA 59.401 55.000 15.18 0.00 44.82 3.41
3386 7738 0.455295 CGTCAGACTTGAGGCGAGTC 60.455 60.000 6.70 6.70 43.25 3.36
3387 7739 1.581954 CGTCAGACTTGAGGCGAGT 59.418 57.895 0.00 0.00 33.03 4.18
3388 7740 4.467232 CGTCAGACTTGAGGCGAG 57.533 61.111 0.00 0.00 33.03 5.03
3392 7744 1.153939 CGGAGCGTCAGACTTGAGG 60.154 63.158 0.00 0.00 41.10 3.86
3393 7745 4.467232 CGGAGCGTCAGACTTGAG 57.533 61.111 0.00 0.00 32.98 3.02
3415 7767 3.764160 GATCAAGCTGGAGGGGCGG 62.764 68.421 0.00 0.00 34.52 6.13
3416 7768 2.203126 GATCAAGCTGGAGGGGCG 60.203 66.667 0.00 0.00 34.52 6.13
3417 7769 0.839946 TAAGATCAAGCTGGAGGGGC 59.160 55.000 0.00 0.00 0.00 5.80
3418 7770 2.239654 TGTTAAGATCAAGCTGGAGGGG 59.760 50.000 0.00 0.00 0.00 4.79
3419 7771 3.634397 TGTTAAGATCAAGCTGGAGGG 57.366 47.619 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.