Multiple sequence alignment - TraesCS2A01G462100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G462100 chr2A 100.000 3458 0 0 1 3458 707751913 707748456 0.000000e+00 6386.0
1 TraesCS2A01G462100 chr2D 93.730 2791 124 25 438 3208 568232718 568229959 0.000000e+00 4137.0
2 TraesCS2A01G462100 chr2D 87.452 263 21 9 3204 3458 568229929 568229671 3.380000e-75 292.0
3 TraesCS2A01G462100 chr2B 96.040 2222 67 8 1000 3208 680769699 680767486 0.000000e+00 3596.0
4 TraesCS2A01G462100 chr2B 87.129 505 47 10 438 936 680770674 680770182 1.080000e-154 556.0
5 TraesCS2A01G462100 chr2B 90.541 222 9 6 3204 3414 680767456 680767236 2.030000e-72 283.0
6 TraesCS2A01G462100 chr6D 93.333 225 15 0 1055 1279 67518467 67518243 1.990000e-87 333.0
7 TraesCS2A01G462100 chr6B 88.462 260 24 1 1021 1274 142503344 142503085 3.350000e-80 309.0
8 TraesCS2A01G462100 chr6A 90.222 225 15 2 1055 1279 85023323 85023106 1.570000e-73 287.0
9 TraesCS2A01G462100 chr7D 86.957 69 8 1 3387 3455 446945383 446945450 3.700000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G462100 chr2A 707748456 707751913 3457 True 6386.000000 6386 100.000000 1 3458 1 chr2A.!!$R1 3457
1 TraesCS2A01G462100 chr2D 568229671 568232718 3047 True 2214.500000 4137 90.591000 438 3458 2 chr2D.!!$R1 3020
2 TraesCS2A01G462100 chr2B 680767236 680770674 3438 True 1478.333333 3596 91.236667 438 3414 3 chr2B.!!$R1 2976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.178879 ATGGCATCCTCTCCCCCTAG 60.179 60.0 0.00 0.00 0.00 3.02 F
1530 1956 0.036010 TCTCTAGGCAAGTTGCTGGC 60.036 55.0 26.16 10.88 44.28 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 2157 0.183492 TTCTGTGTTGGCCTTCAGCT 59.817 50.0 3.32 0.0 43.05 4.24 R
2947 3382 0.104855 TGTGGACAGTGAGTGACAGC 59.895 55.0 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.332063 ACCGGAGCTAATCAACCATG 57.668 50.000 9.46 0.00 0.00 3.66
20 21 0.947244 CCGGAGCTAATCAACCATGC 59.053 55.000 0.00 0.00 0.00 4.06
21 22 1.475751 CCGGAGCTAATCAACCATGCT 60.476 52.381 0.00 0.00 36.63 3.79
22 23 1.600957 CGGAGCTAATCAACCATGCTG 59.399 52.381 0.00 0.00 33.83 4.41
23 24 1.336125 GGAGCTAATCAACCATGCTGC 59.664 52.381 0.00 0.00 35.23 5.25
24 25 1.336125 GAGCTAATCAACCATGCTGCC 59.664 52.381 0.00 0.00 33.83 4.85
25 26 1.105457 GCTAATCAACCATGCTGCCA 58.895 50.000 0.00 0.00 0.00 4.92
26 27 1.202336 GCTAATCAACCATGCTGCCAC 60.202 52.381 0.00 0.00 0.00 5.01
27 28 1.406539 CTAATCAACCATGCTGCCACC 59.593 52.381 0.00 0.00 0.00 4.61
28 29 0.542467 AATCAACCATGCTGCCACCA 60.542 50.000 0.00 0.00 0.00 4.17
29 30 0.324923 ATCAACCATGCTGCCACCAT 60.325 50.000 0.00 0.00 0.00 3.55
30 31 1.216977 CAACCATGCTGCCACCATG 59.783 57.895 0.00 0.00 39.74 3.66
31 32 1.228956 AACCATGCTGCCACCATGT 60.229 52.632 0.00 0.00 38.67 3.21
32 33 1.252904 AACCATGCTGCCACCATGTC 61.253 55.000 0.00 0.00 38.67 3.06
33 34 2.420568 CCATGCTGCCACCATGTCC 61.421 63.158 0.00 0.00 38.67 4.02
34 35 1.679641 CATGCTGCCACCATGTCCA 60.680 57.895 0.00 0.00 36.26 4.02
35 36 1.040893 CATGCTGCCACCATGTCCAT 61.041 55.000 0.00 0.00 36.26 3.41
36 37 1.040893 ATGCTGCCACCATGTCCATG 61.041 55.000 0.00 0.14 38.51 3.66
37 38 1.679977 GCTGCCACCATGTCCATGT 60.680 57.895 6.53 0.00 37.11 3.21
38 39 1.940883 GCTGCCACCATGTCCATGTG 61.941 60.000 6.53 5.12 37.11 3.21
39 40 0.609957 CTGCCACCATGTCCATGTGT 60.610 55.000 6.53 1.93 37.11 3.72
40 41 0.894642 TGCCACCATGTCCATGTGTG 60.895 55.000 15.86 15.86 38.52 3.82
41 42 0.608856 GCCACCATGTCCATGTGTGA 60.609 55.000 20.75 0.00 39.84 3.58
42 43 1.456296 CCACCATGTCCATGTGTGAG 58.544 55.000 20.75 12.36 39.84 3.51
43 44 1.271543 CCACCATGTCCATGTGTGAGT 60.272 52.381 20.75 5.72 39.84 3.41
44 45 2.507484 CACCATGTCCATGTGTGAGTT 58.493 47.619 17.01 0.00 39.84 3.01
45 46 2.886523 CACCATGTCCATGTGTGAGTTT 59.113 45.455 17.01 0.00 39.84 2.66
46 47 3.058016 CACCATGTCCATGTGTGAGTTTC 60.058 47.826 17.01 0.00 39.84 2.78
47 48 2.489329 CCATGTCCATGTGTGAGTTTCC 59.511 50.000 6.53 0.00 37.11 3.13
48 49 2.270352 TGTCCATGTGTGAGTTTCCC 57.730 50.000 0.00 0.00 0.00 3.97
49 50 1.774254 TGTCCATGTGTGAGTTTCCCT 59.226 47.619 0.00 0.00 0.00 4.20
50 51 2.224523 TGTCCATGTGTGAGTTTCCCTC 60.225 50.000 0.00 0.00 40.89 4.30
51 52 1.351017 TCCATGTGTGAGTTTCCCTCC 59.649 52.381 0.00 0.00 39.65 4.30
52 53 1.352352 CCATGTGTGAGTTTCCCTCCT 59.648 52.381 0.00 0.00 39.65 3.69
53 54 2.224867 CCATGTGTGAGTTTCCCTCCTT 60.225 50.000 0.00 0.00 39.65 3.36
54 55 3.009033 CCATGTGTGAGTTTCCCTCCTTA 59.991 47.826 0.00 0.00 39.65 2.69
55 56 4.256920 CATGTGTGAGTTTCCCTCCTTAG 58.743 47.826 0.00 0.00 39.65 2.18
56 57 3.583228 TGTGTGAGTTTCCCTCCTTAGA 58.417 45.455 0.00 0.00 39.65 2.10
57 58 3.323979 TGTGTGAGTTTCCCTCCTTAGAC 59.676 47.826 0.00 0.00 39.65 2.59
58 59 3.579151 GTGTGAGTTTCCCTCCTTAGACT 59.421 47.826 0.00 0.00 39.65 3.24
59 60 4.771054 GTGTGAGTTTCCCTCCTTAGACTA 59.229 45.833 0.00 0.00 39.65 2.59
60 61 5.422650 GTGTGAGTTTCCCTCCTTAGACTAT 59.577 44.000 0.00 0.00 39.65 2.12
61 62 5.422331 TGTGAGTTTCCCTCCTTAGACTATG 59.578 44.000 0.00 0.00 39.65 2.23
62 63 4.962995 TGAGTTTCCCTCCTTAGACTATGG 59.037 45.833 7.90 7.90 39.65 2.74
63 64 4.299485 AGTTTCCCTCCTTAGACTATGGG 58.701 47.826 13.10 8.65 36.14 4.00
64 65 2.400467 TCCCTCCTTAGACTATGGGC 57.600 55.000 13.10 0.00 34.89 5.36
65 66 1.132817 TCCCTCCTTAGACTATGGGCC 60.133 57.143 13.10 0.00 34.89 5.80
66 67 1.353091 CCTCCTTAGACTATGGGCCC 58.647 60.000 17.59 17.59 0.00 5.80
67 68 1.414538 CCTCCTTAGACTATGGGCCCA 60.415 57.143 30.92 30.92 0.00 5.36
68 69 2.625639 CTCCTTAGACTATGGGCCCAT 58.374 52.381 38.67 38.67 40.19 4.00
69 70 3.504156 CCTCCTTAGACTATGGGCCCATA 60.504 52.174 36.86 36.86 37.82 2.74
70 71 4.168101 CTCCTTAGACTATGGGCCCATAA 58.832 47.826 37.93 26.49 38.30 1.90
71 72 3.908103 TCCTTAGACTATGGGCCCATAAC 59.092 47.826 37.93 32.22 38.30 1.89
72 73 3.650942 CCTTAGACTATGGGCCCATAACA 59.349 47.826 37.93 23.33 38.30 2.41
73 74 4.263068 CCTTAGACTATGGGCCCATAACAG 60.263 50.000 37.93 31.63 38.30 3.16
74 75 2.776665 AGACTATGGGCCCATAACAGT 58.223 47.619 37.93 34.26 38.30 3.55
75 76 3.936461 AGACTATGGGCCCATAACAGTA 58.064 45.455 37.93 21.92 38.30 2.74
76 77 3.904339 AGACTATGGGCCCATAACAGTAG 59.096 47.826 37.93 30.34 38.30 2.57
77 78 2.979678 ACTATGGGCCCATAACAGTAGG 59.020 50.000 37.93 27.84 38.30 3.18
78 79 1.907240 ATGGGCCCATAACAGTAGGT 58.093 50.000 36.79 8.71 34.49 3.08
79 80 2.572229 TGGGCCCATAACAGTAGGTA 57.428 50.000 24.45 0.00 0.00 3.08
80 81 2.404559 TGGGCCCATAACAGTAGGTAG 58.595 52.381 24.45 0.00 0.00 3.18
81 82 2.022820 TGGGCCCATAACAGTAGGTAGA 60.023 50.000 24.45 0.00 0.00 2.59
82 83 3.248888 GGGCCCATAACAGTAGGTAGAT 58.751 50.000 19.95 0.00 0.00 1.98
83 84 3.008049 GGGCCCATAACAGTAGGTAGATG 59.992 52.174 19.95 0.00 0.00 2.90
84 85 3.008049 GGCCCATAACAGTAGGTAGATGG 59.992 52.174 0.00 0.00 40.44 3.51
85 86 3.557264 GCCCATAACAGTAGGTAGATGGC 60.557 52.174 0.00 0.00 39.87 4.40
86 87 3.646162 CCCATAACAGTAGGTAGATGGCA 59.354 47.826 0.00 0.00 39.87 4.92
87 88 4.287067 CCCATAACAGTAGGTAGATGGCAT 59.713 45.833 0.00 0.00 39.87 4.40
88 89 5.482908 CCATAACAGTAGGTAGATGGCATC 58.517 45.833 19.78 19.78 36.72 3.91
89 90 5.482908 CATAACAGTAGGTAGATGGCATCC 58.517 45.833 23.33 9.71 0.00 3.51
90 91 3.336509 ACAGTAGGTAGATGGCATCCT 57.663 47.619 23.33 16.55 0.00 3.24
91 92 3.235200 ACAGTAGGTAGATGGCATCCTC 58.765 50.000 23.33 15.83 0.00 3.71
92 93 3.116939 ACAGTAGGTAGATGGCATCCTCT 60.117 47.826 23.33 18.80 0.00 3.69
93 94 3.509575 CAGTAGGTAGATGGCATCCTCTC 59.490 52.174 23.33 11.02 0.00 3.20
94 95 2.022718 AGGTAGATGGCATCCTCTCC 57.977 55.000 23.33 18.53 0.00 3.71
95 96 0.980423 GGTAGATGGCATCCTCTCCC 59.020 60.000 23.33 12.27 0.00 4.30
96 97 0.980423 GTAGATGGCATCCTCTCCCC 59.020 60.000 23.33 0.00 0.00 4.81
97 98 0.178891 TAGATGGCATCCTCTCCCCC 60.179 60.000 23.33 0.00 0.00 5.40
98 99 1.463018 GATGGCATCCTCTCCCCCT 60.463 63.158 16.75 0.00 0.00 4.79
99 100 0.178891 GATGGCATCCTCTCCCCCTA 60.179 60.000 16.75 0.00 0.00 3.53
100 101 0.178879 ATGGCATCCTCTCCCCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
101 102 2.220586 GGCATCCTCTCCCCCTAGC 61.221 68.421 0.00 0.00 0.00 3.42
102 103 1.152139 GCATCCTCTCCCCCTAGCT 60.152 63.158 0.00 0.00 0.00 3.32
103 104 0.766288 GCATCCTCTCCCCCTAGCTT 60.766 60.000 0.00 0.00 0.00 3.74
104 105 1.347062 CATCCTCTCCCCCTAGCTTC 58.653 60.000 0.00 0.00 0.00 3.86
105 106 1.132881 CATCCTCTCCCCCTAGCTTCT 60.133 57.143 0.00 0.00 0.00 2.85
106 107 0.558712 TCCTCTCCCCCTAGCTTCTC 59.441 60.000 0.00 0.00 0.00 2.87
107 108 0.263172 CCTCTCCCCCTAGCTTCTCA 59.737 60.000 0.00 0.00 0.00 3.27
108 109 1.343478 CCTCTCCCCCTAGCTTCTCAA 60.343 57.143 0.00 0.00 0.00 3.02
109 110 2.472029 CTCTCCCCCTAGCTTCTCAAA 58.528 52.381 0.00 0.00 0.00 2.69
110 111 2.169561 CTCTCCCCCTAGCTTCTCAAAC 59.830 54.545 0.00 0.00 0.00 2.93
111 112 1.909302 CTCCCCCTAGCTTCTCAAACA 59.091 52.381 0.00 0.00 0.00 2.83
112 113 2.305927 CTCCCCCTAGCTTCTCAAACAA 59.694 50.000 0.00 0.00 0.00 2.83
113 114 2.714250 TCCCCCTAGCTTCTCAAACAAA 59.286 45.455 0.00 0.00 0.00 2.83
114 115 3.084786 CCCCCTAGCTTCTCAAACAAAG 58.915 50.000 0.00 0.00 0.00 2.77
115 116 3.244911 CCCCCTAGCTTCTCAAACAAAGA 60.245 47.826 0.00 0.00 0.00 2.52
116 117 4.568592 CCCCCTAGCTTCTCAAACAAAGAT 60.569 45.833 0.00 0.00 0.00 2.40
117 118 4.637977 CCCCTAGCTTCTCAAACAAAGATC 59.362 45.833 0.00 0.00 0.00 2.75
118 119 4.331168 CCCTAGCTTCTCAAACAAAGATCG 59.669 45.833 0.00 0.00 0.00 3.69
119 120 4.932200 CCTAGCTTCTCAAACAAAGATCGT 59.068 41.667 0.00 0.00 0.00 3.73
120 121 4.999751 AGCTTCTCAAACAAAGATCGTC 57.000 40.909 0.00 0.00 0.00 4.20
121 122 3.748568 AGCTTCTCAAACAAAGATCGTCC 59.251 43.478 0.00 0.00 0.00 4.79
122 123 3.120165 GCTTCTCAAACAAAGATCGTCCC 60.120 47.826 0.00 0.00 0.00 4.46
123 124 4.319177 CTTCTCAAACAAAGATCGTCCCT 58.681 43.478 0.00 0.00 0.00 4.20
124 125 3.926616 TCTCAAACAAAGATCGTCCCTC 58.073 45.455 0.00 0.00 0.00 4.30
125 126 3.003480 CTCAAACAAAGATCGTCCCTCC 58.997 50.000 0.00 0.00 0.00 4.30
126 127 2.370519 TCAAACAAAGATCGTCCCTCCA 59.629 45.455 0.00 0.00 0.00 3.86
127 128 3.009033 TCAAACAAAGATCGTCCCTCCAT 59.991 43.478 0.00 0.00 0.00 3.41
128 129 2.698855 ACAAAGATCGTCCCTCCATG 57.301 50.000 0.00 0.00 0.00 3.66
129 130 2.187958 ACAAAGATCGTCCCTCCATGA 58.812 47.619 0.00 0.00 0.00 3.07
130 131 2.774234 ACAAAGATCGTCCCTCCATGAT 59.226 45.455 0.00 0.00 0.00 2.45
131 132 3.181461 ACAAAGATCGTCCCTCCATGATC 60.181 47.826 0.00 0.00 38.60 2.92
132 133 1.638529 AGATCGTCCCTCCATGATCC 58.361 55.000 0.00 0.00 38.96 3.36
133 134 1.133041 AGATCGTCCCTCCATGATCCA 60.133 52.381 0.00 0.00 38.96 3.41
134 135 1.905215 GATCGTCCCTCCATGATCCAT 59.095 52.381 0.00 0.00 34.04 3.41
135 136 1.806496 TCGTCCCTCCATGATCCATT 58.194 50.000 0.00 0.00 0.00 3.16
136 137 2.126882 TCGTCCCTCCATGATCCATTT 58.873 47.619 0.00 0.00 0.00 2.32
137 138 2.158769 TCGTCCCTCCATGATCCATTTG 60.159 50.000 0.00 0.00 0.00 2.32
138 139 2.158769 CGTCCCTCCATGATCCATTTGA 60.159 50.000 0.00 0.00 0.00 2.69
139 140 3.217626 GTCCCTCCATGATCCATTTGAC 58.782 50.000 0.00 0.00 0.00 3.18
140 141 2.158769 TCCCTCCATGATCCATTTGACG 60.159 50.000 0.00 0.00 0.00 4.35
141 142 1.605710 CCTCCATGATCCATTTGACGC 59.394 52.381 0.00 0.00 0.00 5.19
142 143 2.291365 CTCCATGATCCATTTGACGCA 58.709 47.619 0.00 0.00 0.00 5.24
143 144 2.684374 CTCCATGATCCATTTGACGCAA 59.316 45.455 0.00 0.00 0.00 4.85
144 145 3.289836 TCCATGATCCATTTGACGCAAT 58.710 40.909 0.00 0.00 0.00 3.56
145 146 3.700539 TCCATGATCCATTTGACGCAATT 59.299 39.130 0.00 0.00 0.00 2.32
146 147 4.046462 CCATGATCCATTTGACGCAATTC 58.954 43.478 0.00 0.00 0.00 2.17
147 148 4.202080 CCATGATCCATTTGACGCAATTCT 60.202 41.667 0.00 0.00 0.00 2.40
148 149 4.621068 TGATCCATTTGACGCAATTCTC 57.379 40.909 0.00 0.00 0.00 2.87
149 150 3.063861 TGATCCATTTGACGCAATTCTCG 59.936 43.478 0.00 0.00 0.00 4.04
150 151 1.737236 TCCATTTGACGCAATTCTCGG 59.263 47.619 2.28 0.00 0.00 4.63
151 152 1.468520 CCATTTGACGCAATTCTCGGT 59.531 47.619 2.28 0.00 0.00 4.69
152 153 2.508867 CATTTGACGCAATTCTCGGTG 58.491 47.619 2.28 0.00 0.00 4.94
153 154 1.588674 TTTGACGCAATTCTCGGTGT 58.411 45.000 2.28 0.00 0.00 4.16
154 155 0.865111 TTGACGCAATTCTCGGTGTG 59.135 50.000 2.28 0.00 0.00 3.82
155 156 1.132640 GACGCAATTCTCGGTGTGC 59.867 57.895 2.28 0.00 0.00 4.57
156 157 1.291877 GACGCAATTCTCGGTGTGCT 61.292 55.000 2.28 0.00 34.79 4.40
157 158 0.884704 ACGCAATTCTCGGTGTGCTT 60.885 50.000 2.28 0.00 34.79 3.91
158 159 0.453282 CGCAATTCTCGGTGTGCTTG 60.453 55.000 0.00 0.00 34.79 4.01
159 160 0.593128 GCAATTCTCGGTGTGCTTGT 59.407 50.000 0.00 0.00 34.13 3.16
160 161 1.001378 GCAATTCTCGGTGTGCTTGTT 60.001 47.619 0.00 0.00 34.13 2.83
161 162 2.653890 CAATTCTCGGTGTGCTTGTTG 58.346 47.619 0.00 0.00 0.00 3.33
162 163 1.967319 ATTCTCGGTGTGCTTGTTGT 58.033 45.000 0.00 0.00 0.00 3.32
163 164 2.605837 TTCTCGGTGTGCTTGTTGTA 57.394 45.000 0.00 0.00 0.00 2.41
164 165 2.148916 TCTCGGTGTGCTTGTTGTAG 57.851 50.000 0.00 0.00 0.00 2.74
165 166 1.411246 TCTCGGTGTGCTTGTTGTAGT 59.589 47.619 0.00 0.00 0.00 2.73
166 167 2.624364 TCTCGGTGTGCTTGTTGTAGTA 59.376 45.455 0.00 0.00 0.00 1.82
167 168 3.257375 TCTCGGTGTGCTTGTTGTAGTAT 59.743 43.478 0.00 0.00 0.00 2.12
168 169 3.322369 TCGGTGTGCTTGTTGTAGTATG 58.678 45.455 0.00 0.00 0.00 2.39
169 170 3.006003 TCGGTGTGCTTGTTGTAGTATGA 59.994 43.478 0.00 0.00 0.00 2.15
170 171 3.122948 CGGTGTGCTTGTTGTAGTATGAC 59.877 47.826 0.00 0.00 0.00 3.06
171 172 3.122948 GGTGTGCTTGTTGTAGTATGACG 59.877 47.826 0.00 0.00 0.00 4.35
172 173 3.985279 GTGTGCTTGTTGTAGTATGACGA 59.015 43.478 0.00 0.00 0.00 4.20
173 174 4.446385 GTGTGCTTGTTGTAGTATGACGAA 59.554 41.667 0.00 0.00 0.00 3.85
174 175 5.120208 GTGTGCTTGTTGTAGTATGACGAAT 59.880 40.000 0.00 0.00 0.00 3.34
175 176 5.120053 TGTGCTTGTTGTAGTATGACGAATG 59.880 40.000 0.00 0.00 0.00 2.67
176 177 4.629634 TGCTTGTTGTAGTATGACGAATGG 59.370 41.667 0.00 0.00 0.00 3.16
177 178 4.868171 GCTTGTTGTAGTATGACGAATGGA 59.132 41.667 0.00 0.00 0.00 3.41
178 179 5.220416 GCTTGTTGTAGTATGACGAATGGAC 60.220 44.000 0.00 0.00 0.00 4.02
179 180 5.394224 TGTTGTAGTATGACGAATGGACA 57.606 39.130 0.00 0.00 0.00 4.02
180 181 5.165676 TGTTGTAGTATGACGAATGGACAC 58.834 41.667 0.00 0.00 0.00 3.67
181 182 5.047590 TGTTGTAGTATGACGAATGGACACT 60.048 40.000 0.00 0.00 0.00 3.55
182 183 5.654603 TGTAGTATGACGAATGGACACTT 57.345 39.130 0.00 0.00 0.00 3.16
183 184 6.032956 TGTAGTATGACGAATGGACACTTT 57.967 37.500 0.00 0.00 0.00 2.66
184 185 7.160547 TGTAGTATGACGAATGGACACTTTA 57.839 36.000 0.00 0.00 0.00 1.85
185 186 7.778083 TGTAGTATGACGAATGGACACTTTAT 58.222 34.615 0.00 0.00 0.00 1.40
186 187 7.704899 TGTAGTATGACGAATGGACACTTTATG 59.295 37.037 0.00 0.00 0.00 1.90
187 188 6.873997 AGTATGACGAATGGACACTTTATGA 58.126 36.000 0.00 0.00 0.00 2.15
188 189 7.500992 AGTATGACGAATGGACACTTTATGAT 58.499 34.615 0.00 0.00 0.00 2.45
189 190 6.851222 ATGACGAATGGACACTTTATGATC 57.149 37.500 0.00 0.00 0.00 2.92
190 191 5.729510 TGACGAATGGACACTTTATGATCA 58.270 37.500 0.00 0.00 0.00 2.92
191 192 6.348498 TGACGAATGGACACTTTATGATCAT 58.652 36.000 13.81 13.81 0.00 2.45
192 193 7.496747 TGACGAATGGACACTTTATGATCATA 58.503 34.615 11.49 11.49 0.00 2.15
193 194 8.150296 TGACGAATGGACACTTTATGATCATAT 58.850 33.333 16.06 0.79 0.00 1.78
194 195 8.908786 ACGAATGGACACTTTATGATCATATT 57.091 30.769 16.06 5.37 0.00 1.28
195 196 9.996554 ACGAATGGACACTTTATGATCATATTA 57.003 29.630 16.06 7.00 0.00 0.98
225 226 8.369218 TGGATTTCTTTTGAATTCTTTTGAGC 57.631 30.769 7.05 0.00 38.30 4.26
226 227 7.442062 TGGATTTCTTTTGAATTCTTTTGAGCC 59.558 33.333 7.05 0.41 38.30 4.70
227 228 7.442062 GGATTTCTTTTGAATTCTTTTGAGCCA 59.558 33.333 7.05 0.00 38.30 4.75
228 229 8.913487 ATTTCTTTTGAATTCTTTTGAGCCAT 57.087 26.923 7.05 0.00 38.37 4.40
229 230 8.735692 TTTCTTTTGAATTCTTTTGAGCCATT 57.264 26.923 7.05 0.00 38.37 3.16
230 231 8.735692 TTCTTTTGAATTCTTTTGAGCCATTT 57.264 26.923 7.05 0.00 32.77 2.32
231 232 8.145316 TCTTTTGAATTCTTTTGAGCCATTTG 57.855 30.769 7.05 0.00 0.00 2.32
232 233 5.927954 TTGAATTCTTTTGAGCCATTTGC 57.072 34.783 7.05 0.00 41.71 3.68
248 249 7.572502 GCCATTTGCTGCATTATTTATAGAC 57.427 36.000 1.84 0.00 36.87 2.59
249 250 7.147312 GCCATTTGCTGCATTATTTATAGACA 58.853 34.615 1.84 0.00 36.87 3.41
250 251 7.652909 GCCATTTGCTGCATTATTTATAGACAA 59.347 33.333 1.84 0.00 36.87 3.18
251 252 9.188588 CCATTTGCTGCATTATTTATAGACAAG 57.811 33.333 1.84 0.00 0.00 3.16
252 253 9.955208 CATTTGCTGCATTATTTATAGACAAGA 57.045 29.630 1.84 0.00 0.00 3.02
254 255 7.734924 TGCTGCATTATTTATAGACAAGAGG 57.265 36.000 0.00 0.00 0.00 3.69
255 256 7.282585 TGCTGCATTATTTATAGACAAGAGGT 58.717 34.615 0.00 0.00 0.00 3.85
256 257 8.428852 TGCTGCATTATTTATAGACAAGAGGTA 58.571 33.333 0.00 0.00 0.00 3.08
257 258 8.930760 GCTGCATTATTTATAGACAAGAGGTAG 58.069 37.037 0.00 0.00 0.00 3.18
258 259 9.988815 CTGCATTATTTATAGACAAGAGGTAGT 57.011 33.333 0.00 0.00 0.00 2.73
271 272 9.696572 AGACAAGAGGTAGTTATGTATGTTAGA 57.303 33.333 0.00 0.00 0.00 2.10
274 275 9.698309 CAAGAGGTAGTTATGTATGTTAGATGG 57.302 37.037 0.00 0.00 0.00 3.51
275 276 8.423906 AGAGGTAGTTATGTATGTTAGATGGG 57.576 38.462 0.00 0.00 0.00 4.00
276 277 8.011290 AGAGGTAGTTATGTATGTTAGATGGGT 58.989 37.037 0.00 0.00 0.00 4.51
277 278 8.562949 AGGTAGTTATGTATGTTAGATGGGTT 57.437 34.615 0.00 0.00 0.00 4.11
278 279 8.999895 AGGTAGTTATGTATGTTAGATGGGTTT 58.000 33.333 0.00 0.00 0.00 3.27
287 288 9.613428 TGTATGTTAGATGGGTTTAATCTTGAG 57.387 33.333 0.00 0.00 35.92 3.02
288 289 9.832445 GTATGTTAGATGGGTTTAATCTTGAGA 57.168 33.333 0.00 0.00 35.92 3.27
289 290 8.970859 ATGTTAGATGGGTTTAATCTTGAGAG 57.029 34.615 0.00 0.00 35.92 3.20
290 291 8.146053 TGTTAGATGGGTTTAATCTTGAGAGA 57.854 34.615 0.00 0.00 35.92 3.10
291 292 8.602424 TGTTAGATGGGTTTAATCTTGAGAGAA 58.398 33.333 0.00 0.00 35.92 2.87
292 293 9.620259 GTTAGATGGGTTTAATCTTGAGAGAAT 57.380 33.333 0.00 0.00 35.92 2.40
294 295 8.744568 AGATGGGTTTAATCTTGAGAGAATTC 57.255 34.615 0.00 0.00 35.07 2.17
295 296 8.555729 AGATGGGTTTAATCTTGAGAGAATTCT 58.444 33.333 7.95 7.95 35.07 2.40
296 297 9.838339 GATGGGTTTAATCTTGAGAGAATTCTA 57.162 33.333 8.25 0.00 35.07 2.10
298 299 9.838339 TGGGTTTAATCTTGAGAGAATTCTATC 57.162 33.333 20.77 20.77 35.07 2.08
299 300 9.278978 GGGTTTAATCTTGAGAGAATTCTATCC 57.721 37.037 23.70 10.13 35.07 2.59
305 306 9.653516 AATCTTGAGAGAATTCTATCCTAGTGA 57.346 33.333 23.70 15.20 35.07 3.41
306 307 9.827198 ATCTTGAGAGAATTCTATCCTAGTGAT 57.173 33.333 23.70 16.40 35.07 3.06
321 322 8.840200 ATCCTAGTGATAGAAAGGTAAACAGA 57.160 34.615 0.00 0.00 0.00 3.41
322 323 8.660295 TCCTAGTGATAGAAAGGTAAACAGAA 57.340 34.615 0.00 0.00 0.00 3.02
323 324 9.096823 TCCTAGTGATAGAAAGGTAAACAGAAA 57.903 33.333 0.00 0.00 0.00 2.52
324 325 9.720769 CCTAGTGATAGAAAGGTAAACAGAAAA 57.279 33.333 0.00 0.00 0.00 2.29
326 327 8.622948 AGTGATAGAAAGGTAAACAGAAAAGG 57.377 34.615 0.00 0.00 0.00 3.11
327 328 8.437575 AGTGATAGAAAGGTAAACAGAAAAGGA 58.562 33.333 0.00 0.00 0.00 3.36
328 329 9.232473 GTGATAGAAAGGTAAACAGAAAAGGAT 57.768 33.333 0.00 0.00 0.00 3.24
336 337 8.777578 AGGTAAACAGAAAAGGATAAAAAGGT 57.222 30.769 0.00 0.00 0.00 3.50
337 338 9.871175 AGGTAAACAGAAAAGGATAAAAAGGTA 57.129 29.630 0.00 0.00 0.00 3.08
342 343 8.990163 ACAGAAAAGGATAAAAAGGTAGTTGA 57.010 30.769 0.00 0.00 0.00 3.18
343 344 9.588096 ACAGAAAAGGATAAAAAGGTAGTTGAT 57.412 29.630 0.00 0.00 0.00 2.57
355 356 7.745620 AAAGGTAGTTGATTAGTTGTCTTGG 57.254 36.000 0.00 0.00 0.00 3.61
356 357 6.435292 AGGTAGTTGATTAGTTGTCTTGGT 57.565 37.500 0.00 0.00 0.00 3.67
357 358 7.549147 AGGTAGTTGATTAGTTGTCTTGGTA 57.451 36.000 0.00 0.00 0.00 3.25
358 359 7.970102 AGGTAGTTGATTAGTTGTCTTGGTAA 58.030 34.615 0.00 0.00 0.00 2.85
359 360 8.603304 AGGTAGTTGATTAGTTGTCTTGGTAAT 58.397 33.333 0.00 0.00 0.00 1.89
360 361 8.665685 GGTAGTTGATTAGTTGTCTTGGTAATG 58.334 37.037 0.00 0.00 0.00 1.90
361 362 9.431887 GTAGTTGATTAGTTGTCTTGGTAATGA 57.568 33.333 0.00 0.00 0.00 2.57
362 363 8.918202 AGTTGATTAGTTGTCTTGGTAATGAA 57.082 30.769 0.00 0.00 0.00 2.57
363 364 8.784043 AGTTGATTAGTTGTCTTGGTAATGAAC 58.216 33.333 0.00 0.00 32.42 3.18
364 365 7.359262 TGATTAGTTGTCTTGGTAATGAACG 57.641 36.000 0.00 0.00 0.00 3.95
365 366 6.370442 TGATTAGTTGTCTTGGTAATGAACGG 59.630 38.462 0.00 0.00 0.00 4.44
366 367 4.345859 AGTTGTCTTGGTAATGAACGGA 57.654 40.909 0.00 0.00 0.00 4.69
367 368 4.315803 AGTTGTCTTGGTAATGAACGGAG 58.684 43.478 0.00 0.00 0.00 4.63
368 369 3.328382 TGTCTTGGTAATGAACGGAGG 57.672 47.619 0.00 0.00 0.00 4.30
369 370 2.635915 TGTCTTGGTAATGAACGGAGGT 59.364 45.455 0.00 0.00 0.00 3.85
370 371 3.833650 TGTCTTGGTAATGAACGGAGGTA 59.166 43.478 0.00 0.00 0.00 3.08
371 372 4.283978 TGTCTTGGTAATGAACGGAGGTAA 59.716 41.667 0.00 0.00 0.00 2.85
372 373 5.221682 TGTCTTGGTAATGAACGGAGGTAAA 60.222 40.000 0.00 0.00 0.00 2.01
373 374 5.350640 GTCTTGGTAATGAACGGAGGTAAAG 59.649 44.000 0.00 0.00 0.00 1.85
374 375 5.246656 TCTTGGTAATGAACGGAGGTAAAGA 59.753 40.000 0.00 0.00 0.00 2.52
375 376 5.080969 TGGTAATGAACGGAGGTAAAGAG 57.919 43.478 0.00 0.00 0.00 2.85
376 377 4.773674 TGGTAATGAACGGAGGTAAAGAGA 59.226 41.667 0.00 0.00 0.00 3.10
377 378 5.246656 TGGTAATGAACGGAGGTAAAGAGAA 59.753 40.000 0.00 0.00 0.00 2.87
378 379 6.070424 TGGTAATGAACGGAGGTAAAGAGAAT 60.070 38.462 0.00 0.00 0.00 2.40
379 380 7.124599 TGGTAATGAACGGAGGTAAAGAGAATA 59.875 37.037 0.00 0.00 0.00 1.75
380 381 8.148999 GGTAATGAACGGAGGTAAAGAGAATAT 58.851 37.037 0.00 0.00 0.00 1.28
383 384 7.893124 TGAACGGAGGTAAAGAGAATATACT 57.107 36.000 0.00 0.00 0.00 2.12
384 385 8.985315 TGAACGGAGGTAAAGAGAATATACTA 57.015 34.615 0.00 0.00 0.00 1.82
385 386 9.584008 TGAACGGAGGTAAAGAGAATATACTAT 57.416 33.333 0.00 0.00 0.00 2.12
387 388 9.810870 AACGGAGGTAAAGAGAATATACTATCT 57.189 33.333 0.00 0.00 0.00 1.98
388 389 9.810870 ACGGAGGTAAAGAGAATATACTATCTT 57.189 33.333 0.00 0.00 33.51 2.40
407 408 9.588096 ACTATCTTGATTAGTTGGGTTTTTCTT 57.412 29.630 0.00 0.00 0.00 2.52
410 411 7.496747 TCTTGATTAGTTGGGTTTTTCTTTGG 58.503 34.615 0.00 0.00 0.00 3.28
411 412 6.800072 TGATTAGTTGGGTTTTTCTTTGGT 57.200 33.333 0.00 0.00 0.00 3.67
412 413 7.189079 TGATTAGTTGGGTTTTTCTTTGGTT 57.811 32.000 0.00 0.00 0.00 3.67
413 414 7.625469 TGATTAGTTGGGTTTTTCTTTGGTTT 58.375 30.769 0.00 0.00 0.00 3.27
414 415 8.103935 TGATTAGTTGGGTTTTTCTTTGGTTTT 58.896 29.630 0.00 0.00 0.00 2.43
415 416 8.871629 ATTAGTTGGGTTTTTCTTTGGTTTTT 57.128 26.923 0.00 0.00 0.00 1.94
416 417 6.811253 AGTTGGGTTTTTCTTTGGTTTTTC 57.189 33.333 0.00 0.00 0.00 2.29
417 418 6.539173 AGTTGGGTTTTTCTTTGGTTTTTCT 58.461 32.000 0.00 0.00 0.00 2.52
418 419 6.429692 AGTTGGGTTTTTCTTTGGTTTTTCTG 59.570 34.615 0.00 0.00 0.00 3.02
419 420 6.115448 TGGGTTTTTCTTTGGTTTTTCTGA 57.885 33.333 0.00 0.00 0.00 3.27
420 421 6.534634 TGGGTTTTTCTTTGGTTTTTCTGAA 58.465 32.000 0.00 0.00 0.00 3.02
421 422 6.998673 TGGGTTTTTCTTTGGTTTTTCTGAAA 59.001 30.769 0.00 0.00 0.00 2.69
422 423 7.502561 TGGGTTTTTCTTTGGTTTTTCTGAAAA 59.497 29.630 11.33 11.33 33.45 2.29
423 424 8.519526 GGGTTTTTCTTTGGTTTTTCTGAAAAT 58.480 29.630 15.63 0.00 37.12 1.82
424 425 9.906660 GGTTTTTCTTTGGTTTTTCTGAAAATT 57.093 25.926 15.63 0.00 37.12 1.82
711 717 8.912658 AGAGAAACAAGAAAAGAAAAACGAAAC 58.087 29.630 0.00 0.00 0.00 2.78
753 759 9.185680 TCTAGAACATTCCTAAAATAAAAGCCC 57.814 33.333 0.00 0.00 0.00 5.19
757 764 3.021177 TCCTAAAATAAAAGCCCCGGG 57.979 47.619 15.80 15.80 0.00 5.73
774 781 0.895559 GGGCCCAAACACTCCAGAAG 60.896 60.000 19.95 0.00 0.00 2.85
779 786 1.600916 AAACACTCCAGAAGCCGGC 60.601 57.895 21.89 21.89 0.00 6.13
795 802 2.897436 CCGGCACTAACCTAACCTAAC 58.103 52.381 0.00 0.00 0.00 2.34
801 808 3.518303 CACTAACCTAACCTAACTGGGCT 59.482 47.826 0.00 0.00 41.11 5.19
819 826 1.202330 CTGGCCCATTCTCTCTGACT 58.798 55.000 0.00 0.00 0.00 3.41
820 827 0.907486 TGGCCCATTCTCTCTGACTG 59.093 55.000 0.00 0.00 0.00 3.51
848 855 3.550030 GCACGCAGTTGGTAGACAATTTT 60.550 43.478 0.00 0.00 41.61 1.82
851 858 2.979813 GCAGTTGGTAGACAATTTTGCG 59.020 45.455 0.00 0.00 41.95 4.85
867 874 0.387878 TGCGGCAATAAACGGCAAAG 60.388 50.000 0.00 0.00 39.96 2.77
893 900 2.358737 CCTCCAAAGCGCTTCCGT 60.359 61.111 25.24 4.77 36.67 4.69
908 915 1.379443 CCGTAAAAGGCCCCCTTCC 60.379 63.158 0.00 0.00 43.92 3.46
909 916 1.379443 CGTAAAAGGCCCCCTTCCC 60.379 63.158 0.00 0.00 43.92 3.97
910 917 1.001248 GTAAAAGGCCCCCTTCCCC 59.999 63.158 0.00 0.00 43.92 4.81
911 918 1.151223 TAAAAGGCCCCCTTCCCCT 60.151 57.895 0.00 0.00 43.92 4.79
912 919 0.782522 TAAAAGGCCCCCTTCCCCTT 60.783 55.000 0.00 0.00 43.92 3.95
913 920 2.106923 AAAAGGCCCCCTTCCCCTTC 62.107 60.000 0.00 0.00 43.92 3.46
988 995 2.358247 CAACTCAACCGACCCCCG 60.358 66.667 0.00 0.00 38.18 5.73
1307 1733 3.264897 CGCGGCCTCGAATCTTGG 61.265 66.667 10.23 0.00 39.00 3.61
1320 1746 3.263261 GAATCTTGGAGACGGAGAAACC 58.737 50.000 0.00 0.00 0.00 3.27
1333 1759 3.661025 GAAACCGATGTTGGCGCCG 62.661 63.158 23.90 8.37 34.13 6.46
1359 1785 1.338020 GCCGGAAATCATGATGGTTCC 59.662 52.381 21.93 21.93 36.89 3.62
1395 1821 3.264193 AGACTGGCATACAAGATGGTGAA 59.736 43.478 0.00 0.00 0.00 3.18
1426 1852 0.978907 AAGCCAAGGCAAAGGATTGG 59.021 50.000 14.40 0.00 45.16 3.16
1436 1862 3.181458 GGCAAAGGATTGGATCATGCAAT 60.181 43.478 3.66 3.66 41.19 3.56
1464 1890 6.296087 GCAGTGATTCTGAAGATATGGGGATA 60.296 42.308 0.00 0.00 46.27 2.59
1478 1904 2.092103 TGGGGATAAATCCTTTCGGTGG 60.092 50.000 8.85 0.00 46.35 4.61
1490 1916 0.183971 TTCGGTGGTCATTTGGGTGT 59.816 50.000 0.00 0.00 0.00 4.16
1492 1918 0.536233 CGGTGGTCATTTGGGTGTGA 60.536 55.000 0.00 0.00 0.00 3.58
1502 1928 2.906691 TTGGGTGTGAAAAATGCCAG 57.093 45.000 0.00 0.00 0.00 4.85
1526 1952 2.086869 TGCAATCTCTAGGCAAGTTGC 58.913 47.619 19.87 19.87 44.08 4.17
1530 1956 0.036010 TCTCTAGGCAAGTTGCTGGC 60.036 55.000 26.16 10.88 44.28 4.85
1546 1972 5.738619 TGCTGGCGAAGGATTAGATAATA 57.261 39.130 0.00 0.00 0.00 0.98
1667 2093 4.268405 GGCGAAAATAAATGAACATGCTGG 59.732 41.667 0.00 0.00 0.00 4.85
1718 2144 5.599999 AATCAGTCGGAAAGCTATGTAGT 57.400 39.130 0.00 0.00 0.00 2.73
1728 2154 3.099267 AGCTATGTAGTCAATGCCGTC 57.901 47.619 0.00 0.00 0.00 4.79
1731 2157 3.621268 GCTATGTAGTCAATGCCGTCAAA 59.379 43.478 0.00 0.00 0.00 2.69
1850 2276 3.864583 TGCACTGAAAATGTTGAAGTTGC 59.135 39.130 0.00 0.00 0.00 4.17
1944 2370 1.369091 GGATTGACATTGAGCGCGGT 61.369 55.000 12.23 12.23 0.00 5.68
2017 2443 2.599082 GTCTCGAATGGCTTTACTGTCG 59.401 50.000 0.00 0.00 0.00 4.35
2018 2444 2.230508 TCTCGAATGGCTTTACTGTCGT 59.769 45.455 0.00 0.00 0.00 4.34
2313 2739 3.429372 AAAGGCCGGGTGCTTGTCA 62.429 57.895 2.18 0.00 40.92 3.58
2634 3060 0.532573 CGCCTCCACTTTCAGAGCTA 59.467 55.000 0.00 0.00 0.00 3.32
2639 3072 3.594134 CTCCACTTTCAGAGCTACAAGG 58.406 50.000 0.00 0.00 0.00 3.61
2815 3250 5.138276 GGGGTTAAAAGGAGAGTCAGTTTT 58.862 41.667 0.00 0.00 0.00 2.43
2917 3352 7.454380 TCCACTCCATATCTTCAAATTTTGGTT 59.546 33.333 9.18 0.00 0.00 3.67
2947 3382 9.440773 ACATGTAATATTATGGTGCATACTCTG 57.559 33.333 0.00 0.00 0.00 3.35
2967 3402 1.858091 CTGTCACTCACTGTCCACAC 58.142 55.000 0.00 0.00 0.00 3.82
2997 3432 3.564235 TGCTGTCTCAACATGCAATTC 57.436 42.857 0.00 0.00 36.93 2.17
3024 3459 9.736023 CATTTGGCTTCATACCTTTATAAGTTC 57.264 33.333 0.00 0.00 0.00 3.01
3083 3522 9.577110 CATGTCAATTTTCACAAGCATATTAGT 57.423 29.630 0.00 0.00 0.00 2.24
3088 3527 9.630098 CAATTTTCACAAGCATATTAGTGAACT 57.370 29.630 6.37 0.00 46.87 3.01
3130 3569 7.681939 TTACATGTTCTCTTGATTAACCCAC 57.318 36.000 2.30 0.00 0.00 4.61
3170 3609 3.674997 AGCGTGTCAGATTGTGGTTTAT 58.325 40.909 0.00 0.00 0.00 1.40
3182 3621 4.350368 TGTGGTTTATCAAGCAGTCTCA 57.650 40.909 0.00 0.00 41.08 3.27
3183 3622 4.910195 TGTGGTTTATCAAGCAGTCTCAT 58.090 39.130 0.00 0.00 41.08 2.90
3225 3698 3.857052 TGACCGTGGACATCAGTATTTC 58.143 45.455 0.00 0.00 0.00 2.17
3231 3704 4.192317 GTGGACATCAGTATTTCCCTGAC 58.808 47.826 0.00 0.00 41.47 3.51
3236 3709 4.080863 ACATCAGTATTTCCCTGACCTCAC 60.081 45.833 0.00 0.00 41.47 3.51
3297 3778 5.974158 CCAGAGTCTCGTTCTATACATTGTG 59.026 44.000 0.00 0.00 0.00 3.33
3351 3835 5.297776 CCACACATCTGAAATTATCCTGGAC 59.702 44.000 0.00 0.00 0.00 4.02
3403 3887 5.527582 CCTATTACCTCTGTCCCAAAATTCG 59.472 44.000 0.00 0.00 0.00 3.34
3405 3889 3.223674 ACCTCTGTCCCAAAATTCGTT 57.776 42.857 0.00 0.00 0.00 3.85
3418 3910 9.632807 TCCCAAAATTCGTTTCTTATATTTGTG 57.367 29.630 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.747206 GCATGGTTGATTAGCTCCGGT 60.747 52.381 0.00 0.00 0.00 5.28
1 2 0.947244 GCATGGTTGATTAGCTCCGG 59.053 55.000 0.00 0.00 0.00 5.14
2 3 1.600957 CAGCATGGTTGATTAGCTCCG 59.399 52.381 0.00 0.00 32.35 4.63
3 4 1.336125 GCAGCATGGTTGATTAGCTCC 59.664 52.381 0.00 0.00 35.86 4.70
4 5 1.336125 GGCAGCATGGTTGATTAGCTC 59.664 52.381 0.00 0.00 35.86 4.09
5 6 1.341285 TGGCAGCATGGTTGATTAGCT 60.341 47.619 0.00 0.00 35.86 3.32
6 7 1.105457 TGGCAGCATGGTTGATTAGC 58.895 50.000 0.00 0.00 35.86 3.09
7 8 1.406539 GGTGGCAGCATGGTTGATTAG 59.593 52.381 12.58 0.00 35.86 1.73
8 9 1.272369 TGGTGGCAGCATGGTTGATTA 60.272 47.619 16.56 0.00 35.86 1.75
9 10 0.542467 TGGTGGCAGCATGGTTGATT 60.542 50.000 16.56 0.00 35.86 2.57
10 11 0.324923 ATGGTGGCAGCATGGTTGAT 60.325 50.000 29.53 6.11 34.64 2.57
11 12 1.077086 ATGGTGGCAGCATGGTTGA 59.923 52.632 29.53 1.92 34.64 3.18
12 13 1.216977 CATGGTGGCAGCATGGTTG 59.783 57.895 38.84 23.44 46.94 3.77
13 14 3.702802 CATGGTGGCAGCATGGTT 58.297 55.556 38.84 16.95 46.94 3.67
17 18 1.040893 CATGGACATGGTGGCAGCAT 61.041 55.000 25.41 25.41 36.65 3.79
18 19 1.679641 CATGGACATGGTGGCAGCA 60.680 57.895 22.88 22.88 35.24 4.41
19 20 1.679977 ACATGGACATGGTGGCAGC 60.680 57.895 15.94 10.30 42.91 5.25
20 21 0.609957 ACACATGGACATGGTGGCAG 60.610 55.000 15.94 2.52 42.91 4.85
21 22 0.894642 CACACATGGACATGGTGGCA 60.895 55.000 15.94 0.00 42.91 4.92
22 23 0.608856 TCACACATGGACATGGTGGC 60.609 55.000 22.17 0.00 42.91 5.01
23 24 1.271543 ACTCACACATGGACATGGTGG 60.272 52.381 22.17 17.67 42.91 4.61
24 25 2.189594 ACTCACACATGGACATGGTG 57.810 50.000 15.94 17.86 42.91 4.17
25 26 2.957402 AACTCACACATGGACATGGT 57.043 45.000 15.94 8.49 42.91 3.55
26 27 2.489329 GGAAACTCACACATGGACATGG 59.511 50.000 15.94 7.93 42.91 3.66
27 28 2.489329 GGGAAACTCACACATGGACATG 59.511 50.000 10.57 10.57 44.15 3.21
28 29 2.376518 AGGGAAACTCACACATGGACAT 59.623 45.455 0.00 0.00 0.00 3.06
29 30 1.774254 AGGGAAACTCACACATGGACA 59.226 47.619 0.00 0.00 0.00 4.02
30 31 2.427506 GAGGGAAACTCACACATGGAC 58.572 52.381 0.00 0.00 45.85 4.02
31 32 2.859165 GAGGGAAACTCACACATGGA 57.141 50.000 0.00 0.00 45.85 3.41
40 41 4.345547 CCCATAGTCTAAGGAGGGAAACTC 59.654 50.000 2.56 0.00 45.84 3.01
41 42 4.299485 CCCATAGTCTAAGGAGGGAAACT 58.701 47.826 2.56 0.00 38.60 2.66
42 43 3.181453 GCCCATAGTCTAAGGAGGGAAAC 60.181 52.174 2.56 0.00 38.60 2.78
43 44 3.046374 GCCCATAGTCTAAGGAGGGAAA 58.954 50.000 2.56 0.00 38.60 3.13
44 45 2.690840 GCCCATAGTCTAAGGAGGGAA 58.309 52.381 2.56 0.00 38.60 3.97
45 46 1.132817 GGCCCATAGTCTAAGGAGGGA 60.133 57.143 2.56 0.00 38.60 4.20
46 47 1.353091 GGCCCATAGTCTAAGGAGGG 58.647 60.000 2.56 4.56 39.33 4.30
47 48 1.353091 GGGCCCATAGTCTAAGGAGG 58.647 60.000 19.95 0.00 0.00 4.30
48 49 2.103153 TGGGCCCATAGTCTAAGGAG 57.897 55.000 24.45 0.00 0.00 3.69
49 50 2.815357 ATGGGCCCATAGTCTAAGGA 57.185 50.000 36.79 3.46 34.49 3.36
50 51 3.650942 TGTTATGGGCCCATAGTCTAAGG 59.349 47.826 36.95 0.00 39.68 2.69
51 52 4.348168 ACTGTTATGGGCCCATAGTCTAAG 59.652 45.833 36.95 29.89 39.68 2.18
52 53 4.303794 ACTGTTATGGGCCCATAGTCTAA 58.696 43.478 36.95 25.22 39.68 2.10
53 54 3.936461 ACTGTTATGGGCCCATAGTCTA 58.064 45.455 36.95 24.03 39.68 2.59
54 55 2.776665 ACTGTTATGGGCCCATAGTCT 58.223 47.619 36.95 21.08 39.68 3.24
55 56 3.008049 CCTACTGTTATGGGCCCATAGTC 59.992 52.174 36.95 31.79 39.68 2.59
56 57 2.979678 CCTACTGTTATGGGCCCATAGT 59.020 50.000 36.95 34.25 39.68 2.12
57 58 2.979678 ACCTACTGTTATGGGCCCATAG 59.020 50.000 36.95 31.14 39.68 2.23
58 59 3.069084 ACCTACTGTTATGGGCCCATA 57.931 47.619 36.34 36.34 37.82 2.74
59 60 1.907240 ACCTACTGTTATGGGCCCAT 58.093 50.000 38.67 38.67 40.19 4.00
60 61 2.022820 TCTACCTACTGTTATGGGCCCA 60.023 50.000 30.92 30.92 0.00 5.36
61 62 2.686119 TCTACCTACTGTTATGGGCCC 58.314 52.381 17.59 17.59 0.00 5.80
62 63 3.008049 CCATCTACCTACTGTTATGGGCC 59.992 52.174 0.00 0.00 36.41 5.80
63 64 3.557264 GCCATCTACCTACTGTTATGGGC 60.557 52.174 0.00 0.00 38.66 5.36
64 65 3.646162 TGCCATCTACCTACTGTTATGGG 59.354 47.826 0.00 0.00 38.66 4.00
65 66 4.955811 TGCCATCTACCTACTGTTATGG 57.044 45.455 0.00 0.00 40.07 2.74
66 67 5.247110 AGGATGCCATCTACCTACTGTTATG 59.753 44.000 4.41 0.00 0.00 1.90
67 68 5.407049 AGGATGCCATCTACCTACTGTTAT 58.593 41.667 4.41 0.00 0.00 1.89
68 69 4.816126 AGGATGCCATCTACCTACTGTTA 58.184 43.478 4.41 0.00 0.00 2.41
69 70 3.643792 GAGGATGCCATCTACCTACTGTT 59.356 47.826 4.41 0.00 32.53 3.16
70 71 3.116939 AGAGGATGCCATCTACCTACTGT 60.117 47.826 4.41 0.00 32.53 3.55
71 72 3.505386 AGAGGATGCCATCTACCTACTG 58.495 50.000 4.41 0.00 32.53 2.74
72 73 3.501385 GGAGAGGATGCCATCTACCTACT 60.501 52.174 4.41 0.00 32.53 2.57
73 74 2.829120 GGAGAGGATGCCATCTACCTAC 59.171 54.545 4.41 0.00 32.53 3.18
74 75 2.225394 GGGAGAGGATGCCATCTACCTA 60.225 54.545 4.41 0.00 42.51 3.08
75 76 1.484065 GGGAGAGGATGCCATCTACCT 60.484 57.143 4.41 0.00 42.51 3.08
76 77 0.980423 GGGAGAGGATGCCATCTACC 59.020 60.000 4.41 3.55 39.36 3.18
77 78 0.980423 GGGGAGAGGATGCCATCTAC 59.020 60.000 4.41 0.00 42.44 2.59
78 79 0.178891 GGGGGAGAGGATGCCATCTA 60.179 60.000 4.41 0.00 42.44 1.98
79 80 1.463018 GGGGGAGAGGATGCCATCT 60.463 63.158 4.41 0.00 42.44 2.90
80 81 0.178891 TAGGGGGAGAGGATGCCATC 60.179 60.000 0.00 0.00 42.44 3.51
81 82 0.178879 CTAGGGGGAGAGGATGCCAT 60.179 60.000 0.00 0.00 42.44 4.40
82 83 1.237163 CTAGGGGGAGAGGATGCCA 59.763 63.158 0.00 0.00 42.44 4.92
83 84 2.220586 GCTAGGGGGAGAGGATGCC 61.221 68.421 0.00 0.00 39.11 4.40
84 85 0.766288 AAGCTAGGGGGAGAGGATGC 60.766 60.000 0.00 0.00 0.00 3.91
85 86 1.132881 AGAAGCTAGGGGGAGAGGATG 60.133 57.143 0.00 0.00 0.00 3.51
86 87 1.149077 GAGAAGCTAGGGGGAGAGGAT 59.851 57.143 0.00 0.00 0.00 3.24
87 88 0.558712 GAGAAGCTAGGGGGAGAGGA 59.441 60.000 0.00 0.00 0.00 3.71
88 89 0.263172 TGAGAAGCTAGGGGGAGAGG 59.737 60.000 0.00 0.00 0.00 3.69
89 90 2.166907 TTGAGAAGCTAGGGGGAGAG 57.833 55.000 0.00 0.00 0.00 3.20
90 91 2.188817 GTTTGAGAAGCTAGGGGGAGA 58.811 52.381 0.00 0.00 0.00 3.71
91 92 1.909302 TGTTTGAGAAGCTAGGGGGAG 59.091 52.381 0.00 0.00 0.00 4.30
92 93 2.038863 TGTTTGAGAAGCTAGGGGGA 57.961 50.000 0.00 0.00 0.00 4.81
93 94 2.879103 TTGTTTGAGAAGCTAGGGGG 57.121 50.000 0.00 0.00 0.00 5.40
94 95 4.021102 TCTTTGTTTGAGAAGCTAGGGG 57.979 45.455 0.00 0.00 0.00 4.79
95 96 4.331168 CGATCTTTGTTTGAGAAGCTAGGG 59.669 45.833 0.00 0.00 0.00 3.53
96 97 4.932200 ACGATCTTTGTTTGAGAAGCTAGG 59.068 41.667 0.00 0.00 0.00 3.02
97 98 5.062809 GGACGATCTTTGTTTGAGAAGCTAG 59.937 44.000 0.00 0.00 0.00 3.42
98 99 4.929808 GGACGATCTTTGTTTGAGAAGCTA 59.070 41.667 0.00 0.00 0.00 3.32
99 100 3.748568 GGACGATCTTTGTTTGAGAAGCT 59.251 43.478 0.00 0.00 0.00 3.74
100 101 3.120165 GGGACGATCTTTGTTTGAGAAGC 60.120 47.826 0.00 0.00 0.00 3.86
101 102 4.319177 AGGGACGATCTTTGTTTGAGAAG 58.681 43.478 0.00 0.00 0.00 2.85
102 103 4.315803 GAGGGACGATCTTTGTTTGAGAA 58.684 43.478 0.00 0.00 0.00 2.87
103 104 3.306780 GGAGGGACGATCTTTGTTTGAGA 60.307 47.826 0.00 0.00 0.00 3.27
104 105 3.003480 GGAGGGACGATCTTTGTTTGAG 58.997 50.000 0.00 0.00 0.00 3.02
105 106 2.370519 TGGAGGGACGATCTTTGTTTGA 59.629 45.455 0.00 0.00 0.00 2.69
106 107 2.778299 TGGAGGGACGATCTTTGTTTG 58.222 47.619 0.00 0.00 0.00 2.93
107 108 3.009033 TCATGGAGGGACGATCTTTGTTT 59.991 43.478 0.00 0.00 0.00 2.83
108 109 2.571653 TCATGGAGGGACGATCTTTGTT 59.428 45.455 0.00 0.00 0.00 2.83
109 110 2.187958 TCATGGAGGGACGATCTTTGT 58.812 47.619 0.00 0.00 0.00 2.83
110 111 2.988010 TCATGGAGGGACGATCTTTG 57.012 50.000 0.00 0.00 0.00 2.77
111 112 2.370189 GGATCATGGAGGGACGATCTTT 59.630 50.000 0.00 0.00 35.62 2.52
112 113 1.974236 GGATCATGGAGGGACGATCTT 59.026 52.381 0.00 0.00 35.62 2.40
113 114 1.133041 TGGATCATGGAGGGACGATCT 60.133 52.381 0.00 0.00 35.62 2.75
114 115 1.342074 TGGATCATGGAGGGACGATC 58.658 55.000 0.00 0.00 34.74 3.69
115 116 2.035910 ATGGATCATGGAGGGACGAT 57.964 50.000 0.00 0.00 0.00 3.73
116 117 1.806496 AATGGATCATGGAGGGACGA 58.194 50.000 0.00 0.00 0.00 4.20
117 118 2.158769 TCAAATGGATCATGGAGGGACG 60.159 50.000 0.00 0.00 0.00 4.79
118 119 3.217626 GTCAAATGGATCATGGAGGGAC 58.782 50.000 0.00 0.00 0.00 4.46
119 120 2.158769 CGTCAAATGGATCATGGAGGGA 60.159 50.000 0.00 0.00 0.00 4.20
120 121 2.224606 CGTCAAATGGATCATGGAGGG 58.775 52.381 0.00 0.00 0.00 4.30
121 122 1.605710 GCGTCAAATGGATCATGGAGG 59.394 52.381 0.00 0.00 0.00 4.30
122 123 2.291365 TGCGTCAAATGGATCATGGAG 58.709 47.619 0.00 0.00 0.00 3.86
123 124 2.416680 TGCGTCAAATGGATCATGGA 57.583 45.000 0.00 0.00 0.00 3.41
124 125 3.720949 ATTGCGTCAAATGGATCATGG 57.279 42.857 0.00 0.00 0.00 3.66
125 126 4.928601 AGAATTGCGTCAAATGGATCATG 58.071 39.130 0.00 0.00 0.00 3.07
126 127 4.260907 CGAGAATTGCGTCAAATGGATCAT 60.261 41.667 0.00 0.00 0.00 2.45
127 128 3.063861 CGAGAATTGCGTCAAATGGATCA 59.936 43.478 0.00 0.00 0.00 2.92
128 129 3.546815 CCGAGAATTGCGTCAAATGGATC 60.547 47.826 0.00 0.00 0.00 3.36
129 130 2.355756 CCGAGAATTGCGTCAAATGGAT 59.644 45.455 0.00 0.00 0.00 3.41
130 131 1.737236 CCGAGAATTGCGTCAAATGGA 59.263 47.619 0.00 0.00 0.00 3.41
131 132 1.468520 ACCGAGAATTGCGTCAAATGG 59.531 47.619 0.00 0.00 0.00 3.16
132 133 2.095768 ACACCGAGAATTGCGTCAAATG 60.096 45.455 0.00 0.00 0.00 2.32
133 134 2.095768 CACACCGAGAATTGCGTCAAAT 60.096 45.455 0.00 0.00 0.00 2.32
134 135 1.262950 CACACCGAGAATTGCGTCAAA 59.737 47.619 0.00 0.00 0.00 2.69
135 136 0.865111 CACACCGAGAATTGCGTCAA 59.135 50.000 0.00 0.00 0.00 3.18
136 137 1.565156 GCACACCGAGAATTGCGTCA 61.565 55.000 0.00 0.00 0.00 4.35
137 138 1.132640 GCACACCGAGAATTGCGTC 59.867 57.895 0.00 0.00 0.00 5.19
138 139 0.884704 AAGCACACCGAGAATTGCGT 60.885 50.000 0.00 0.00 40.04 5.24
139 140 0.453282 CAAGCACACCGAGAATTGCG 60.453 55.000 0.00 0.00 40.04 4.85
140 141 0.593128 ACAAGCACACCGAGAATTGC 59.407 50.000 0.00 0.00 35.08 3.56
141 142 2.033299 ACAACAAGCACACCGAGAATTG 59.967 45.455 0.00 0.00 0.00 2.32
142 143 2.297701 ACAACAAGCACACCGAGAATT 58.702 42.857 0.00 0.00 0.00 2.17
143 144 1.967319 ACAACAAGCACACCGAGAAT 58.033 45.000 0.00 0.00 0.00 2.40
144 145 2.159014 ACTACAACAAGCACACCGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
145 146 1.411246 ACTACAACAAGCACACCGAGA 59.589 47.619 0.00 0.00 0.00 4.04
146 147 1.865865 ACTACAACAAGCACACCGAG 58.134 50.000 0.00 0.00 0.00 4.63
147 148 3.006003 TCATACTACAACAAGCACACCGA 59.994 43.478 0.00 0.00 0.00 4.69
148 149 3.122948 GTCATACTACAACAAGCACACCG 59.877 47.826 0.00 0.00 0.00 4.94
149 150 3.122948 CGTCATACTACAACAAGCACACC 59.877 47.826 0.00 0.00 0.00 4.16
150 151 3.985279 TCGTCATACTACAACAAGCACAC 59.015 43.478 0.00 0.00 0.00 3.82
151 152 4.245845 TCGTCATACTACAACAAGCACA 57.754 40.909 0.00 0.00 0.00 4.57
152 153 5.445939 CCATTCGTCATACTACAACAAGCAC 60.446 44.000 0.00 0.00 0.00 4.40
153 154 4.629634 CCATTCGTCATACTACAACAAGCA 59.370 41.667 0.00 0.00 0.00 3.91
154 155 4.868171 TCCATTCGTCATACTACAACAAGC 59.132 41.667 0.00 0.00 0.00 4.01
155 156 5.867174 TGTCCATTCGTCATACTACAACAAG 59.133 40.000 0.00 0.00 0.00 3.16
156 157 5.636121 GTGTCCATTCGTCATACTACAACAA 59.364 40.000 0.00 0.00 0.00 2.83
157 158 5.047590 AGTGTCCATTCGTCATACTACAACA 60.048 40.000 0.00 0.00 0.00 3.33
158 159 5.408356 AGTGTCCATTCGTCATACTACAAC 58.592 41.667 0.00 0.00 0.00 3.32
159 160 5.654603 AGTGTCCATTCGTCATACTACAA 57.345 39.130 0.00 0.00 0.00 2.41
160 161 5.654603 AAGTGTCCATTCGTCATACTACA 57.345 39.130 0.00 0.00 0.00 2.74
161 162 7.919091 TCATAAAGTGTCCATTCGTCATACTAC 59.081 37.037 0.00 0.00 0.00 2.73
162 163 8.002984 TCATAAAGTGTCCATTCGTCATACTA 57.997 34.615 0.00 0.00 0.00 1.82
163 164 6.873997 TCATAAAGTGTCCATTCGTCATACT 58.126 36.000 0.00 0.00 0.00 2.12
164 165 7.438160 TGATCATAAAGTGTCCATTCGTCATAC 59.562 37.037 0.00 0.00 0.00 2.39
165 166 7.496747 TGATCATAAAGTGTCCATTCGTCATA 58.503 34.615 0.00 0.00 0.00 2.15
166 167 6.348498 TGATCATAAAGTGTCCATTCGTCAT 58.652 36.000 0.00 0.00 0.00 3.06
167 168 5.729510 TGATCATAAAGTGTCCATTCGTCA 58.270 37.500 0.00 0.00 0.00 4.35
168 169 6.851222 ATGATCATAAAGTGTCCATTCGTC 57.149 37.500 6.36 0.00 0.00 4.20
169 170 8.908786 AATATGATCATAAAGTGTCCATTCGT 57.091 30.769 19.03 0.00 0.00 3.85
199 200 8.996271 GCTCAAAAGAATTCAAAAGAAATCCAT 58.004 29.630 8.44 0.00 0.00 3.41
200 201 7.442062 GGCTCAAAAGAATTCAAAAGAAATCCA 59.558 33.333 8.44 0.00 0.00 3.41
201 202 7.442062 TGGCTCAAAAGAATTCAAAAGAAATCC 59.558 33.333 8.44 0.00 0.00 3.01
202 203 8.369218 TGGCTCAAAAGAATTCAAAAGAAATC 57.631 30.769 8.44 0.00 0.00 2.17
203 204 8.913487 ATGGCTCAAAAGAATTCAAAAGAAAT 57.087 26.923 8.44 0.00 0.00 2.17
204 205 8.735692 AATGGCTCAAAAGAATTCAAAAGAAA 57.264 26.923 8.44 0.00 0.00 2.52
205 206 8.614346 CAAATGGCTCAAAAGAATTCAAAAGAA 58.386 29.630 8.44 0.00 0.00 2.52
206 207 7.254863 GCAAATGGCTCAAAAGAATTCAAAAGA 60.255 33.333 8.44 0.00 40.25 2.52
207 208 6.854381 GCAAATGGCTCAAAAGAATTCAAAAG 59.146 34.615 8.44 0.00 40.25 2.27
208 209 6.727215 GCAAATGGCTCAAAAGAATTCAAAA 58.273 32.000 8.44 0.00 40.25 2.44
209 210 6.303021 GCAAATGGCTCAAAAGAATTCAAA 57.697 33.333 8.44 0.00 40.25 2.69
210 211 5.927954 GCAAATGGCTCAAAAGAATTCAA 57.072 34.783 8.44 0.00 40.25 2.69
224 225 7.147312 TGTCTATAAATAATGCAGCAAATGGC 58.853 34.615 0.00 0.00 45.30 4.40
225 226 9.188588 CTTGTCTATAAATAATGCAGCAAATGG 57.811 33.333 0.00 0.00 0.00 3.16
226 227 9.955208 TCTTGTCTATAAATAATGCAGCAAATG 57.045 29.630 0.00 0.00 0.00 2.32
228 229 8.623903 CCTCTTGTCTATAAATAATGCAGCAAA 58.376 33.333 0.00 0.00 0.00 3.68
229 230 7.775093 ACCTCTTGTCTATAAATAATGCAGCAA 59.225 33.333 0.00 0.00 0.00 3.91
230 231 7.282585 ACCTCTTGTCTATAAATAATGCAGCA 58.717 34.615 0.00 0.00 0.00 4.41
231 232 7.736447 ACCTCTTGTCTATAAATAATGCAGC 57.264 36.000 0.00 0.00 0.00 5.25
232 233 9.988815 ACTACCTCTTGTCTATAAATAATGCAG 57.011 33.333 0.00 0.00 0.00 4.41
245 246 9.696572 TCTAACATACATAACTACCTCTTGTCT 57.303 33.333 0.00 0.00 0.00 3.41
248 249 9.698309 CCATCTAACATACATAACTACCTCTTG 57.302 37.037 0.00 0.00 0.00 3.02
249 250 8.871125 CCCATCTAACATACATAACTACCTCTT 58.129 37.037 0.00 0.00 0.00 2.85
250 251 8.011290 ACCCATCTAACATACATAACTACCTCT 58.989 37.037 0.00 0.00 0.00 3.69
251 252 8.191534 ACCCATCTAACATACATAACTACCTC 57.808 38.462 0.00 0.00 0.00 3.85
252 253 8.562949 AACCCATCTAACATACATAACTACCT 57.437 34.615 0.00 0.00 0.00 3.08
261 262 9.613428 CTCAAGATTAAACCCATCTAACATACA 57.387 33.333 0.00 0.00 30.35 2.29
262 263 9.832445 TCTCAAGATTAAACCCATCTAACATAC 57.168 33.333 0.00 0.00 30.35 2.39
264 265 8.772250 TCTCTCAAGATTAAACCCATCTAACAT 58.228 33.333 0.00 0.00 30.35 2.71
265 266 8.146053 TCTCTCAAGATTAAACCCATCTAACA 57.854 34.615 0.00 0.00 30.35 2.41
266 267 9.620259 ATTCTCTCAAGATTAAACCCATCTAAC 57.380 33.333 0.00 0.00 30.35 2.34
268 269 9.838339 GAATTCTCTCAAGATTAAACCCATCTA 57.162 33.333 0.00 0.00 30.35 1.98
269 270 8.555729 AGAATTCTCTCAAGATTAAACCCATCT 58.444 33.333 0.88 0.00 31.94 2.90
270 271 8.744568 AGAATTCTCTCAAGATTAAACCCATC 57.255 34.615 0.88 0.00 0.00 3.51
272 273 9.838339 GATAGAATTCTCTCAAGATTAAACCCA 57.162 33.333 12.24 0.00 32.70 4.51
273 274 9.278978 GGATAGAATTCTCTCAAGATTAAACCC 57.721 37.037 19.20 0.00 32.70 4.11
279 280 9.653516 TCACTAGGATAGAATTCTCTCAAGATT 57.346 33.333 19.20 5.28 42.77 2.40
280 281 9.827198 ATCACTAGGATAGAATTCTCTCAAGAT 57.173 33.333 19.20 12.16 42.77 2.40
295 296 9.931698 TCTGTTTACCTTTCTATCACTAGGATA 57.068 33.333 0.00 0.00 37.44 2.59
296 297 8.840200 TCTGTTTACCTTTCTATCACTAGGAT 57.160 34.615 0.00 0.00 40.14 3.24
297 298 8.660295 TTCTGTTTACCTTTCTATCACTAGGA 57.340 34.615 0.00 0.00 0.00 2.94
298 299 9.720769 TTTTCTGTTTACCTTTCTATCACTAGG 57.279 33.333 0.00 0.00 0.00 3.02
300 301 9.720769 CCTTTTCTGTTTACCTTTCTATCACTA 57.279 33.333 0.00 0.00 0.00 2.74
301 302 8.437575 TCCTTTTCTGTTTACCTTTCTATCACT 58.562 33.333 0.00 0.00 0.00 3.41
302 303 8.617290 TCCTTTTCTGTTTACCTTTCTATCAC 57.383 34.615 0.00 0.00 0.00 3.06
310 311 9.209048 ACCTTTTTATCCTTTTCTGTTTACCTT 57.791 29.630 0.00 0.00 0.00 3.50
311 312 8.777578 ACCTTTTTATCCTTTTCTGTTTACCT 57.222 30.769 0.00 0.00 0.00 3.08
316 317 9.416284 TCAACTACCTTTTTATCCTTTTCTGTT 57.584 29.630 0.00 0.00 0.00 3.16
317 318 8.990163 TCAACTACCTTTTTATCCTTTTCTGT 57.010 30.769 0.00 0.00 0.00 3.41
329 330 8.630037 CCAAGACAACTAATCAACTACCTTTTT 58.370 33.333 0.00 0.00 0.00 1.94
330 331 7.778382 ACCAAGACAACTAATCAACTACCTTTT 59.222 33.333 0.00 0.00 0.00 2.27
331 332 7.287810 ACCAAGACAACTAATCAACTACCTTT 58.712 34.615 0.00 0.00 0.00 3.11
332 333 6.838382 ACCAAGACAACTAATCAACTACCTT 58.162 36.000 0.00 0.00 0.00 3.50
333 334 6.435292 ACCAAGACAACTAATCAACTACCT 57.565 37.500 0.00 0.00 0.00 3.08
334 335 8.665685 CATTACCAAGACAACTAATCAACTACC 58.334 37.037 0.00 0.00 0.00 3.18
335 336 9.431887 TCATTACCAAGACAACTAATCAACTAC 57.568 33.333 0.00 0.00 0.00 2.73
337 338 8.784043 GTTCATTACCAAGACAACTAATCAACT 58.216 33.333 0.00 0.00 0.00 3.16
338 339 7.744715 CGTTCATTACCAAGACAACTAATCAAC 59.255 37.037 0.00 0.00 0.00 3.18
339 340 7.094975 CCGTTCATTACCAAGACAACTAATCAA 60.095 37.037 0.00 0.00 0.00 2.57
340 341 6.370442 CCGTTCATTACCAAGACAACTAATCA 59.630 38.462 0.00 0.00 0.00 2.57
341 342 6.592607 TCCGTTCATTACCAAGACAACTAATC 59.407 38.462 0.00 0.00 0.00 1.75
342 343 6.469410 TCCGTTCATTACCAAGACAACTAAT 58.531 36.000 0.00 0.00 0.00 1.73
343 344 5.856156 TCCGTTCATTACCAAGACAACTAA 58.144 37.500 0.00 0.00 0.00 2.24
344 345 5.471556 TCCGTTCATTACCAAGACAACTA 57.528 39.130 0.00 0.00 0.00 2.24
345 346 4.315803 CTCCGTTCATTACCAAGACAACT 58.684 43.478 0.00 0.00 0.00 3.16
346 347 3.435671 CCTCCGTTCATTACCAAGACAAC 59.564 47.826 0.00 0.00 0.00 3.32
347 348 3.071892 ACCTCCGTTCATTACCAAGACAA 59.928 43.478 0.00 0.00 0.00 3.18
348 349 2.635915 ACCTCCGTTCATTACCAAGACA 59.364 45.455 0.00 0.00 0.00 3.41
349 350 3.329929 ACCTCCGTTCATTACCAAGAC 57.670 47.619 0.00 0.00 0.00 3.01
350 351 5.246656 TCTTTACCTCCGTTCATTACCAAGA 59.753 40.000 0.00 0.00 0.00 3.02
351 352 5.484715 TCTTTACCTCCGTTCATTACCAAG 58.515 41.667 0.00 0.00 0.00 3.61
352 353 5.246656 TCTCTTTACCTCCGTTCATTACCAA 59.753 40.000 0.00 0.00 0.00 3.67
353 354 4.773674 TCTCTTTACCTCCGTTCATTACCA 59.226 41.667 0.00 0.00 0.00 3.25
354 355 5.334724 TCTCTTTACCTCCGTTCATTACC 57.665 43.478 0.00 0.00 0.00 2.85
357 358 8.925338 AGTATATTCTCTTTACCTCCGTTCATT 58.075 33.333 0.00 0.00 0.00 2.57
358 359 8.480133 AGTATATTCTCTTTACCTCCGTTCAT 57.520 34.615 0.00 0.00 0.00 2.57
359 360 7.893124 AGTATATTCTCTTTACCTCCGTTCA 57.107 36.000 0.00 0.00 0.00 3.18
361 362 9.810870 AGATAGTATATTCTCTTTACCTCCGTT 57.189 33.333 0.00 0.00 0.00 4.44
362 363 9.810870 AAGATAGTATATTCTCTTTACCTCCGT 57.189 33.333 0.00 0.00 0.00 4.69
381 382 9.588096 AAGAAAAACCCAACTAATCAAGATAGT 57.412 29.630 0.00 0.00 0.00 2.12
384 385 8.150296 CCAAAGAAAAACCCAACTAATCAAGAT 58.850 33.333 0.00 0.00 0.00 2.40
385 386 7.125053 ACCAAAGAAAAACCCAACTAATCAAGA 59.875 33.333 0.00 0.00 0.00 3.02
386 387 7.272244 ACCAAAGAAAAACCCAACTAATCAAG 58.728 34.615 0.00 0.00 0.00 3.02
387 388 7.189079 ACCAAAGAAAAACCCAACTAATCAA 57.811 32.000 0.00 0.00 0.00 2.57
388 389 6.800072 ACCAAAGAAAAACCCAACTAATCA 57.200 33.333 0.00 0.00 0.00 2.57
389 390 8.500753 AAAACCAAAGAAAAACCCAACTAATC 57.499 30.769 0.00 0.00 0.00 1.75
390 391 8.871629 AAAAACCAAAGAAAAACCCAACTAAT 57.128 26.923 0.00 0.00 0.00 1.73
391 392 8.158132 AGAAAAACCAAAGAAAAACCCAACTAA 58.842 29.630 0.00 0.00 0.00 2.24
392 393 7.604545 CAGAAAAACCAAAGAAAAACCCAACTA 59.395 33.333 0.00 0.00 0.00 2.24
393 394 6.429692 CAGAAAAACCAAAGAAAAACCCAACT 59.570 34.615 0.00 0.00 0.00 3.16
394 395 6.428465 TCAGAAAAACCAAAGAAAAACCCAAC 59.572 34.615 0.00 0.00 0.00 3.77
395 396 6.534634 TCAGAAAAACCAAAGAAAAACCCAA 58.465 32.000 0.00 0.00 0.00 4.12
396 397 6.115448 TCAGAAAAACCAAAGAAAAACCCA 57.885 33.333 0.00 0.00 0.00 4.51
397 398 7.441890 TTTCAGAAAAACCAAAGAAAAACCC 57.558 32.000 0.00 0.00 0.00 4.11
398 399 9.906660 AATTTTCAGAAAAACCAAAGAAAAACC 57.093 25.926 12.38 0.00 38.14 3.27
588 593 9.065798 CAAACCATGTTCCTGGAATTTAATTTT 57.934 29.630 13.07 5.87 39.73 1.82
590 595 7.972301 TCAAACCATGTTCCTGGAATTTAATT 58.028 30.769 13.07 2.71 39.73 1.40
735 741 3.964688 CCCGGGGCTTTTATTTTAGGAAT 59.035 43.478 14.71 0.00 0.00 3.01
753 759 4.278513 TGGAGTGTTTGGGCCCGG 62.279 66.667 19.37 0.00 0.00 5.73
757 764 1.527433 GGCTTCTGGAGTGTTTGGGC 61.527 60.000 0.00 0.00 0.00 5.36
766 773 0.741221 GTTAGTGCCGGCTTCTGGAG 60.741 60.000 29.70 0.00 0.00 3.86
774 781 0.826062 TAGGTTAGGTTAGTGCCGGC 59.174 55.000 22.73 22.73 0.00 6.13
779 786 3.518303 AGCCCAGTTAGGTTAGGTTAGTG 59.482 47.826 0.00 0.00 34.66 2.74
801 808 0.907486 CAGTCAGAGAGAATGGGCCA 59.093 55.000 9.61 9.61 38.62 5.36
820 827 1.433053 TACCAACTGCGTGCACACAC 61.433 55.000 18.64 6.09 43.76 3.82
848 855 0.387878 CTTTGCCGTTTATTGCCGCA 60.388 50.000 0.00 0.00 0.00 5.69
851 858 1.271102 TCCACTTTGCCGTTTATTGCC 59.729 47.619 0.00 0.00 0.00 4.52
893 900 0.782522 AAGGGGAAGGGGGCCTTTTA 60.783 55.000 0.84 0.00 44.82 1.52
908 915 2.913617 AGAGTCTAGGGTTTTGGAAGGG 59.086 50.000 0.00 0.00 0.00 3.95
909 916 3.583086 TGAGAGTCTAGGGTTTTGGAAGG 59.417 47.826 0.00 0.00 0.00 3.46
910 917 4.891992 TGAGAGTCTAGGGTTTTGGAAG 57.108 45.455 0.00 0.00 0.00 3.46
911 918 5.374071 GTTTGAGAGTCTAGGGTTTTGGAA 58.626 41.667 0.00 0.00 0.00 3.53
912 919 4.202430 GGTTTGAGAGTCTAGGGTTTTGGA 60.202 45.833 0.00 0.00 0.00 3.53
913 920 4.072839 GGTTTGAGAGTCTAGGGTTTTGG 58.927 47.826 0.00 0.00 0.00 3.28
954 961 3.305516 GCTGCTGGGTTGGGTTGG 61.306 66.667 0.00 0.00 0.00 3.77
955 962 2.132996 TTGCTGCTGGGTTGGGTTG 61.133 57.895 0.00 0.00 0.00 3.77
956 963 2.133641 GTTGCTGCTGGGTTGGGTT 61.134 57.895 0.00 0.00 0.00 4.11
957 964 2.521708 GTTGCTGCTGGGTTGGGT 60.522 61.111 0.00 0.00 0.00 4.51
1291 1717 1.884926 CTCCAAGATTCGAGGCCGC 60.885 63.158 0.00 0.00 35.37 6.53
1333 1759 1.108727 TCATGATTTCCGGCATGGGC 61.109 55.000 16.67 0.00 41.60 5.36
1337 1763 2.369983 ACCATCATGATTTCCGGCAT 57.630 45.000 5.16 0.00 0.00 4.40
1359 1785 1.071471 AGTCTGCCCAGGAACAACG 59.929 57.895 0.00 0.00 0.00 4.10
1395 1821 0.890996 CTTGGCTTGGCTCGAAACCT 60.891 55.000 5.78 0.00 0.00 3.50
1436 1862 5.121105 CCATATCTTCAGAATCACTGCACA 58.879 41.667 0.00 0.00 45.38 4.57
1478 1904 3.498018 GGCATTTTTCACACCCAAATGAC 59.502 43.478 7.81 1.51 39.34 3.06
1490 1916 6.040209 AGATTGCAATACTGGCATTTTTCA 57.960 33.333 12.97 0.00 41.58 2.69
1492 1918 6.290294 AGAGATTGCAATACTGGCATTTTT 57.710 33.333 12.97 0.00 41.58 1.94
1502 1928 5.731686 GCAACTTGCCTAGAGATTGCAATAC 60.732 44.000 12.97 9.79 43.38 1.89
1523 1949 4.415881 TTATCTAATCCTTCGCCAGCAA 57.584 40.909 0.00 0.00 0.00 3.91
1526 1952 5.422331 TCCCTATTATCTAATCCTTCGCCAG 59.578 44.000 0.00 0.00 0.00 4.85
1546 1972 4.222810 GGAAACACCATTGCTTATTTCCCT 59.777 41.667 0.00 0.00 39.34 4.20
1652 2078 7.465353 TCAAAATCTCCAGCATGTTCATTTA 57.535 32.000 0.00 0.00 0.00 1.40
1653 2079 6.349243 TCAAAATCTCCAGCATGTTCATTT 57.651 33.333 0.00 0.00 0.00 2.32
1667 2093 4.074970 TGAGACTGGCCTTTCAAAATCTC 58.925 43.478 3.32 0.00 33.48 2.75
1718 2144 1.536766 CTTCAGCTTTGACGGCATTGA 59.463 47.619 0.00 0.00 0.00 2.57
1728 2154 0.746063 TGTGTTGGCCTTCAGCTTTG 59.254 50.000 3.32 0.00 43.05 2.77
1731 2157 0.183492 TTCTGTGTTGGCCTTCAGCT 59.817 50.000 3.32 0.00 43.05 4.24
1850 2276 3.070018 CAACCTTCTCCAGTAACAGCAG 58.930 50.000 0.00 0.00 0.00 4.24
1944 2370 3.245586 ACCATCTGATTTGGGGCTTTACA 60.246 43.478 2.60 0.00 38.64 2.41
1954 2380 3.119602 CCTCTGCACAACCATCTGATTTG 60.120 47.826 1.50 1.50 0.00 2.32
2017 2443 7.226720 TCTGGACTTGTTCTTCTGTATTTTCAC 59.773 37.037 0.00 0.00 0.00 3.18
2018 2444 7.226720 GTCTGGACTTGTTCTTCTGTATTTTCA 59.773 37.037 0.00 0.00 0.00 2.69
2313 2739 6.058183 GGTGATAACTATGCTCTCAATGGTT 58.942 40.000 0.00 0.00 0.00 3.67
2634 3060 3.527937 ACAGGGTTGGTAGTATCCTTGT 58.472 45.455 0.00 0.00 35.88 3.16
2639 3072 5.012328 CTGAGAACAGGGTTGGTAGTATC 57.988 47.826 0.00 0.00 40.14 2.24
2815 3250 7.041635 TCAAGAAAAACTGATTCATTGCAGA 57.958 32.000 0.00 0.00 36.07 4.26
2947 3382 0.104855 TGTGGACAGTGAGTGACAGC 59.895 55.000 0.00 0.00 0.00 4.40
2950 3385 0.753262 AGGTGTGGACAGTGAGTGAC 59.247 55.000 0.00 0.00 0.00 3.67
2957 3392 3.149196 CATAAAGCAAGGTGTGGACAGT 58.851 45.455 0.00 0.00 0.00 3.55
2997 3432 8.237811 ACTTATAAAGGTATGAAGCCAAATGG 57.762 34.615 0.00 0.00 38.53 3.16
3024 3459 4.275196 CAGAGGCCACATTTCATATGACAG 59.725 45.833 5.01 0.83 0.00 3.51
3083 3522 5.876651 ATCATACTGTGATAGCCAGTTCA 57.123 39.130 7.30 0.00 45.67 3.18
3088 3527 7.508687 ACATGTAAATCATACTGTGATAGCCA 58.491 34.615 0.00 0.00 46.80 4.75
3130 3569 3.180189 CGCTTTTTGCTGTATGTTGTGTG 59.820 43.478 0.00 0.00 40.11 3.82
3154 3593 5.182001 ACTGCTTGATAAACCACAATCTGAC 59.818 40.000 0.00 0.00 0.00 3.51
3170 3609 4.541973 ATGTGTGTATGAGACTGCTTGA 57.458 40.909 0.00 0.00 0.00 3.02
3182 3621 7.041167 GGTCATGCATTGTACATATGTGTGTAT 60.041 37.037 18.81 12.63 39.39 2.29
3183 3622 6.259829 GGTCATGCATTGTACATATGTGTGTA 59.740 38.462 18.81 11.08 39.39 2.90
3236 3709 2.763933 AGATGCATAGAACATCAGCCG 58.236 47.619 0.00 0.00 45.19 5.52
3297 3778 3.614616 TGTGTCCAAAAATTGAAACGCAC 59.385 39.130 7.35 0.00 34.23 5.34
3351 3835 8.592105 ATTTCAGATGTGTGGTTAAAATTGTG 57.408 30.769 0.00 0.00 0.00 3.33
3379 3863 5.527582 CGAATTTTGGGACAGAGGTAATAGG 59.472 44.000 0.00 0.00 42.39 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.