AutoCloner

Multiple sequence alignment - TraesCS2A01G462000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G462000	chr2A	100.000	2342	0	0	1	2342	707738241	707740582	0.000000e+00	4325.0
1	TraesCS2A01G462000	chr2A	82.792	1139	171	20	768	1896	676376578	676377701	0.000000e+00	994.0
2	TraesCS2A01G462000	chr2A	83.151	914	122	22	1375	2267	176861127	176862029	0.000000e+00	806.0
3	TraesCS2A01G462000	chr2A	84.672	685	89	11	1531	2201	164699276	164698594	0.000000e+00	669.0
4	TraesCS2A01G462000	chr2A	80.926	540	88	10	1656	2188	659912300	659911769	1.670000e-111	412.0
5	TraesCS2A01G462000	chr2A	83.178	107	15	3	2217	2322	676378079	676378183	6.890000e-16	95.3
6	TraesCS2A01G462000	chr2B	86.533	1641	172	26	1	1605	680755404	680757031	0.000000e+00	1760.0
7	TraesCS2A01G462000	chr2B	86.628	1047	125	12	761	1798	713678739	713679779	0.000000e+00	1144.0
8	TraesCS2A01G462000	chr2B	83.016	577	92	5	191	762	713678130	713678705	3.450000e-143	518.0
9	TraesCS2A01G462000	chr6B	85.823	1446	182	15	768	2195	203275495	203274055	0.000000e+00	1513.0
10	TraesCS2A01G462000	chr6B	79.420	758	131	14	24	762	203276287	203275536	1.610000e-141	512.0
11	TraesCS2A01G462000	chr6B	81.507	146	25	2	2187	2331	203274000	203273856	4.090000e-23	119.0
12	TraesCS2A01G462000	chr5D	86.418	1340	161	17	867	2195	205128511	205129840	0.000000e+00	1447.0
13	TraesCS2A01G462000	chr7A	86.066	1342	160	15	879	2201	571360531	571359198	0.000000e+00	1417.0
14	TraesCS2A01G462000	chr7A	92.308	52	4	0	51	102	193610845	193610794	8.980000e-10	75.0
15	TraesCS2A01G462000	chr4D	85.054	1298	174	14	908	2194	132784438	132783150	0.000000e+00	1304.0
16	TraesCS2A01G462000	chr4D	86.957	92	12	0	2187	2278	500405031	500404940	1.140000e-18	104.0
17	TraesCS2A01G462000	chr3B	85.223	1164	151	12	1045	2201	618768201	618769350	0.000000e+00	1177.0
18	TraesCS2A01G462000	chr3B	81.757	148	24	3	1	146	81339910	81339764	1.140000e-23	121.0
19	TraesCS2A01G462000	chr7B	81.384	1445	234	27	765	2187	530847024	530848455	0.000000e+00	1146.0
20	TraesCS2A01G462000	chr7B	83.057	543	83	7	231	765	60692782	60692241	3.500000e-133	484.0
21	TraesCS2A01G462000	chr7B	93.182	44	3	0	2189	2232	619045643	619045686	5.400000e-07	65.8
22	TraesCS2A01G462000	chr4A	87.323	986	106	11	1226	2195	540420934	540419952	0.000000e+00	1110.0
23	TraesCS2A01G462000	chr5A	82.027	740	102	19	45	762	244765004	244765734	3.330000e-168	601.0
24	TraesCS2A01G462000	chr5A	81.633	147	20	5	2189	2331	681066760	681066617	5.290000e-22	115.0
25	TraesCS2A01G462000	chr5A	80.952	147	21	5	2189	2331	681138252	681138109	2.460000e-20	110.0
26	TraesCS2A01G462000	chr2D	80.284	776	118	14	12	765	593038492	593037730	9.460000e-154	553.0
27	TraesCS2A01G462000	chr2D	78.989	752	117	24	44	765	459288596	459287856	2.110000e-130	475.0
28	TraesCS2A01G462000	chr6A	80.707	736	107	26	56	762	140542343	140541614	7.360000e-150	540.0
29	TraesCS2A01G462000	chr4B	79.855	690	94	24	113	769	380689538	380688861	1.640000e-126	462.0
30	TraesCS2A01G462000	chr4B	91.667	60	4	1	2187	2245	433439332	433439273	5.360000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G462000	chr2A	707738241	707740582	2341	False	4325.000000	4325	100.000	1	2342	1	chr2A.!!$F2	2341
1	TraesCS2A01G462000	chr2A	176861127	176862029	902	False	806.000000	806	83.151	1375	2267	1	chr2A.!!$F1	892
2	TraesCS2A01G462000	chr2A	164698594	164699276	682	True	669.000000	669	84.672	1531	2201	1	chr2A.!!$R1	670
3	TraesCS2A01G462000	chr2A	676376578	676378183	1605	False	544.650000	994	82.985	768	2322	2	chr2A.!!$F3	1554
4	TraesCS2A01G462000	chr2A	659911769	659912300	531	True	412.000000	412	80.926	1656	2188	1	chr2A.!!$R2	532
5	TraesCS2A01G462000	chr2B	680755404	680757031	1627	False	1760.000000	1760	86.533	1	1605	1	chr2B.!!$F1	1604
6	TraesCS2A01G462000	chr2B	713678130	713679779	1649	False	831.000000	1144	84.822	191	1798	2	chr2B.!!$F2	1607
7	TraesCS2A01G462000	chr6B	203273856	203276287	2431	True	714.666667	1513	82.250	24	2331	3	chr6B.!!$R1	2307
8	TraesCS2A01G462000	chr5D	205128511	205129840	1329	False	1447.000000	1447	86.418	867	2195	1	chr5D.!!$F1	1328
9	TraesCS2A01G462000	chr7A	571359198	571360531	1333	True	1417.000000	1417	86.066	879	2201	1	chr7A.!!$R2	1322
10	TraesCS2A01G462000	chr4D	132783150	132784438	1288	True	1304.000000	1304	85.054	908	2194	1	chr4D.!!$R1	1286
11	TraesCS2A01G462000	chr3B	618768201	618769350	1149	False	1177.000000	1177	85.223	1045	2201	1	chr3B.!!$F1	1156
12	TraesCS2A01G462000	chr7B	530847024	530848455	1431	False	1146.000000	1146	81.384	765	2187	1	chr7B.!!$F1	1422
13	TraesCS2A01G462000	chr7B	60692241	60692782	541	True	484.000000	484	83.057	231	765	1	chr7B.!!$R1	534
14	TraesCS2A01G462000	chr4A	540419952	540420934	982	True	1110.000000	1110	87.323	1226	2195	1	chr4A.!!$R1	969
15	TraesCS2A01G462000	chr5A	244765004	244765734	730	False	601.000000	601	82.027	45	762	1	chr5A.!!$F1	717
16	TraesCS2A01G462000	chr2D	593037730	593038492	762	True	553.000000	553	80.284	12	765	1	chr2D.!!$R2	753
17	TraesCS2A01G462000	chr2D	459287856	459288596	740	True	475.000000	475	78.989	44	765	1	chr2D.!!$R1	721
18	TraesCS2A01G462000	chr6A	140541614	140542343	729	True	540.000000	540	80.707	56	762	1	chr6A.!!$R1	706
19	TraesCS2A01G462000	chr4B	380688861	380689538	677	True	462.000000	462	79.855	113	769	1	chr4B.!!$R1	656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
927	1030	0.039618	GACCCCAAAGCCAAGATGGA	59.96	55.0	0.0	0.0	40.96	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1844	1992	0.177836	GAGCTCAAGCCTCCTCCTTC	59.822	60.0	9.4	0.0	43.38	3.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	2.353839	ACAAACGTACGCGCGTCT	60.354	55.556	41.35	20.41	45.00	4.18
22	23	0.454957	ACAAACGTACGCGCGTCTAT	60.455	50.000	41.35	22.69	45.00	1.98
63	65	2.305343	CCATTTCTGGCCCAAATTTGGA	59.695	45.455	34.20	16.49	42.67	3.53
334	376	1.956170	CAGTTGACGCCGAAGCAGT	60.956	57.895	0.00	0.00	39.83	4.40
391	434	4.139420	CGCGGACGCAAAGCTCAG	62.139	66.667	17.35	0.00	42.06	3.35
449	492	2.710902	GGAGGAAACCAATGCCCGC	61.711	63.158	0.00	0.00	0.00	6.13
512	555	0.921896	ACCCTGGCTATCATGTGCTT	59.078	50.000	0.00	0.00	0.00	3.91
822	919	0.953960	ACGAGATGGCCAACCGTTTC	60.954	55.000	20.09	8.85	39.70	2.78
853	951	0.537188	ATCATCTTCGAAGGCGGTGT	59.463	50.000	24.37	4.36	38.28	4.16
913	1016	0.326927	TTTGATCCCGACAAGACCCC	59.673	55.000	0.00	0.00	0.00	4.95
916	1019	0.326927	GATCCCGACAAGACCCCAAA	59.673	55.000	0.00	0.00	0.00	3.28
917	1020	0.328258	ATCCCGACAAGACCCCAAAG	59.672	55.000	0.00	0.00	0.00	2.77
919	1022	1.971695	CCGACAAGACCCCAAAGCC	60.972	63.158	0.00	0.00	0.00	4.35
924	1027	1.147817	ACAAGACCCCAAAGCCAAGAT	59.852	47.619	0.00	0.00	0.00	2.40
927	1030	0.039618	GACCCCAAAGCCAAGATGGA	59.960	55.000	0.00	0.00	40.96	3.41
928	1031	0.486879	ACCCCAAAGCCAAGATGGAA	59.513	50.000	0.00	0.00	40.96	3.53
958	1061	1.284491	TCATGCCAGCCACCTTTGATA	59.716	47.619	0.00	0.00	0.00	2.15
962	1065	2.171003	GCCAGCCACCTTTGATAAAGT	58.829	47.619	0.00	0.00	36.77	2.66
1070	1182	3.020274	TCGAGGAAGAGGATGAAGTGAG	58.980	50.000	0.00	0.00	0.00	3.51
1077	1189	2.964464	AGAGGATGAAGTGAGCATCGAT	59.036	45.455	0.00	0.00	42.32	3.59
1096	1208	2.041115	GGGGAGCCTTTGTTCGAGC	61.041	63.158	0.00	0.00	0.00	5.03
1261	1373	5.619981	GCATCTATCTTTTGGCTTCGTGTTT	60.620	40.000	0.00	0.00	0.00	2.83
1292	1404	3.411446	ACCATGAATGCAAGAAGTTCGA	58.589	40.909	0.00	0.00	0.00	3.71
1366	1478	2.305927	AGGGTGATACAACAAGAGTGGG	59.694	50.000	0.00	0.00	0.00	4.61
1387	1499	3.186909	GACAAGTTTTGTGCAACCCTTC	58.813	45.455	0.00	0.00	45.52	3.46
1451	1563	2.638480	ATGGTATACATGCGCCACTT	57.362	45.000	4.18	0.00	38.70	3.16
1452	1564	1.948104	TGGTATACATGCGCCACTTC	58.052	50.000	4.18	0.00	0.00	3.01
1453	1565	0.859232	GGTATACATGCGCCACTTCG	59.141	55.000	4.18	0.00	0.00	3.79
1454	1566	1.567504	GTATACATGCGCCACTTCGT	58.432	50.000	4.18	0.00	0.00	3.85
1459	1571	2.135139	ACATGCGCCACTTCGTATATG	58.865	47.619	4.18	0.00	33.21	1.78
1463	1583	3.783191	TGCGCCACTTCGTATATGTTTA	58.217	40.909	4.18	0.00	0.00	2.01
1511	1633	5.366829	TCATATGCTTGCATGCTATTCAC	57.633	39.130	23.31	3.15	0.00	3.18
1545	1667	2.592102	AGCTTTGGAGGCATTCAAGA	57.408	45.000	0.00	0.00	0.00	3.02
1579	1701	0.396811	AAGTCCTTCAACCTCACCCG	59.603	55.000	0.00	0.00	0.00	5.28
1628	1751	4.770795	AGAAGTTCAAGGCGCAATATACT	58.229	39.130	10.83	3.61	0.00	2.12
1637	1760	1.065401	GCGCAATATACTGCTGCCAAA	59.935	47.619	0.30	0.00	40.33	3.28
1654	1794	2.575455	AAAGCACGTGGGGGTGGAAA	62.575	55.000	18.88	0.00	38.36	3.13
1812	1959	0.320771	AGAAGCGCCGACAAGACAAT	60.321	50.000	2.29	0.00	0.00	2.71
1818	1966	2.002586	CGCCGACAAGACAATGAAGAT	58.997	47.619	0.00	0.00	0.00	2.40
1913	2061	0.326264	ATGAAGGCGGAGAAGCAAGT	59.674	50.000	0.00	0.00	39.27	3.16
1953	2101	1.047002	CCACCAATGCCAAGACCAAA	58.953	50.000	0.00	0.00	0.00	3.28
1955	2103	1.001181	CACCAATGCCAAGACCAAAGG	59.999	52.381	0.00	0.00	0.00	3.11
1956	2104	1.341080	CCAATGCCAAGACCAAAGGT	58.659	50.000	0.00	0.00	39.44	3.50
1957	2105	2.158385	ACCAATGCCAAGACCAAAGGTA	60.158	45.455	0.00	0.00	35.25	3.08
1965	2113	5.187967	TGCCAAGACCAAAGGTAAAAAGAAA	59.812	36.000	0.00	0.00	35.25	2.52
1992	2141	1.756538	TCGCTAGCATGATGACAAGGA	59.243	47.619	16.45	0.00	0.00	3.36
2041	2194	0.681733	GTGTCACTGAGGAAGAGGCA	59.318	55.000	0.00	0.00	0.00	4.75
2112	2269	6.966632	GTGATCTATGATAGAGAGCGTCATTC	59.033	42.308	8.30	0.00	38.38	2.67
2147	2304	1.055849	AGTGTACTGGCATGACCACA	58.944	50.000	8.19	1.52	46.36	4.17
2180	2337	1.593265	GTCGAACTCCCGCCCTTTA	59.407	57.895	0.00	0.00	0.00	1.85
2195	2418	2.559668	CCCTTTATATGTGCTGGCATGG	59.440	50.000	0.00	0.00	0.00	3.66
2247	2490	1.270465	CGCTGACATGATCTATGGCCA	60.270	52.381	8.56	8.56	44.74	5.36
2248	2491	2.424557	GCTGACATGATCTATGGCCAG	58.575	52.381	13.05	0.00	44.74	4.85
2267	2510	5.789521	GCCAGGAGCCTTTTAAAATTTGTA	58.210	37.500	0.09	0.00	34.35	2.41
2274	2517	8.040727	GGAGCCTTTTAAAATTTGTATGTGGAT	58.959	33.333	0.09	0.00	0.00	3.41
2290	2534	4.967036	TGTGGATATGAAATGTATCGGCA	58.033	39.130	0.00	0.00	30.91	5.69
2315	2559	1.406539	GGACGCATTGCTGATCCAAAT	59.593	47.619	14.97	0.00	0.00	2.32
2317	2561	3.254166	GGACGCATTGCTGATCCAAATAT	59.746	43.478	14.97	0.00	0.00	1.28
2322	2566	7.436118	ACGCATTGCTGATCCAAATATAAAAT	58.564	30.769	7.12	0.00	0.00	1.82
2325	2569	7.874016	GCATTGCTGATCCAAATATAAAATGGA	59.126	33.333	0.16	6.89	46.60	3.41
2331	2575	7.396540	GATCCAAATATAAAATGGAGCGGAT	57.603	36.000	9.52	0.00	45.82	4.18
2332	2576	8.506168	GATCCAAATATAAAATGGAGCGGATA	57.494	34.615	9.52	0.00	45.82	2.59
2333	2577	8.877864	ATCCAAATATAAAATGGAGCGGATAA	57.122	30.769	9.52	0.00	45.82	1.75
2334	2578	8.877864	TCCAAATATAAAATGGAGCGGATAAT	57.122	30.769	1.51	0.00	38.30	1.28
2335	2579	8.956426	TCCAAATATAAAATGGAGCGGATAATC	58.044	33.333	1.51	0.00	38.30	1.75
2336	2580	8.190784	CCAAATATAAAATGGAGCGGATAATCC	58.809	37.037	0.00	0.00	36.27	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	30	2.040009	AAATGGATCGTCGGGCGGAT	62.040	55.000	0.71	0.00	41.72	4.18
35	37	1.160329	GGGCCAGAAATGGATCGTCG	61.160	60.000	4.39	0.00	0.00	5.12
37	39	0.331278	TTGGGCCAGAAATGGATCGT	59.669	50.000	6.23	0.00	0.00	3.73
63	65	0.168788	CACGCCAACGCAAATGAGAT	59.831	50.000	0.00	0.00	45.53	2.75
109	116	1.338890	GGTCAGGGAAGGAGTAGGCC	61.339	65.000	0.00	0.00	0.00	5.19
183	209	4.240103	TCATCCATGGCGAGCGGG	62.240	66.667	6.96	0.00	0.00	6.13
241	276	0.250513	GAGGCGATGAAGGTGAGGTT	59.749	55.000	0.00	0.00	0.00	3.50
340	382	3.589654	TTCTCTTGGCCGACCGCAG	62.590	63.158	0.00	0.00	40.31	5.18
344	386	1.377333	CCCTTTCTCTTGGCCGACC	60.377	63.158	0.00	0.00	0.00	4.79
449	492	3.458579	CTCGTTGCCGTGACGACG	61.459	66.667	6.54	9.14	46.62	5.12
547	591	2.267642	CCCGAGGAAATGCCGACA	59.732	61.111	0.00	0.00	43.43	4.35
647	693	2.682136	TCCGACGAGCATTCCCCA	60.682	61.111	0.00	0.00	0.00	4.96
822	919	4.853268	TCGAAGATGATGTTCTCGATGAG	58.147	43.478	0.75	0.00	0.00	2.90
913	1016	1.131883	CGCTCTTCCATCTTGGCTTTG	59.868	52.381	0.00	0.00	37.47	2.77
916	1019	1.451028	GCGCTCTTCCATCTTGGCT	60.451	57.895	0.00	0.00	37.47	4.75
917	1020	2.476320	GGCGCTCTTCCATCTTGGC	61.476	63.158	7.64	0.00	37.47	4.52
919	1022	0.393537	AAGGGCGCTCTTCCATCTTG	60.394	55.000	19.04	0.00	0.00	3.02
924	1027	1.078214	CATGAAGGGCGCTCTTCCA	60.078	57.895	39.54	29.11	41.67	3.53
927	1030	2.439156	GGCATGAAGGGCGCTCTT	60.439	61.111	25.54	25.54	0.00	2.85
928	1031	3.694058	CTGGCATGAAGGGCGCTCT	62.694	63.158	2.34	2.34	35.84	4.09
958	1061	1.523758	GAGTCGTCCATGCCAACTTT	58.476	50.000	0.00	0.00	0.00	2.66
962	1065	0.036388	GAAGGAGTCGTCCATGCCAA	60.036	55.000	0.00	0.00	46.80	4.52
1070	1182	1.152881	AAAGGCTCCCCATCGATGC	60.153	57.895	20.25	8.01	0.00	3.91
1077	1189	1.374947	CTCGAACAAAGGCTCCCCA	59.625	57.895	0.00	0.00	0.00	4.96
1096	1208	1.283793	CTTGGTTGGCGAGCTTGTG	59.716	57.895	5.40	0.00	0.00	3.33
1244	1356	3.810941	ACGATAAACACGAAGCCAAAAGA	59.189	39.130	0.00	0.00	34.70	2.52
1261	1373	4.664150	TGCATTCATGGTACTCACGATA	57.336	40.909	0.00	0.00	0.00	2.92
1292	1404	0.107654	GCTCTCCATTTGGTACGGCT	60.108	55.000	0.00	0.00	36.34	5.52
1366	1478	2.959507	AGGGTTGCACAAAACTTGTC	57.040	45.000	0.00	0.00	43.23	3.18
1387	1499	1.364626	GGACGTGCTTGGATGCTCTG	61.365	60.000	0.00	0.00	0.00	3.35
1451	1563	7.382759	TGCAAGCATAACGATAAACATATACGA	59.617	33.333	0.00	0.00	0.00	3.43
1452	1564	7.506474	TGCAAGCATAACGATAAACATATACG	58.494	34.615	0.00	0.00	0.00	3.06
1453	1565	9.265938	CATGCAAGCATAACGATAAACATATAC	57.734	33.333	7.29	0.00	34.91	1.47
1454	1566	7.962373	GCATGCAAGCATAACGATAAACATATA	59.038	33.333	14.21	0.00	34.91	0.86
1459	1571	3.730715	GGCATGCAAGCATAACGATAAAC	59.269	43.478	21.36	0.00	34.91	2.01
1463	1583	0.670162	GGGCATGCAAGCATAACGAT	59.330	50.000	21.36	0.00	34.91	3.73
1511	1633	4.943705	TCCAAAGCTTAGAATGCCTACAAG	59.056	41.667	0.00	0.00	0.00	3.16
1545	1667	0.250901	GACTTGCTGTCATGTGGGGT	60.251	55.000	5.73	0.00	44.73	4.95
1579	1701	3.181497	CCCGTTGATGATCATCCAACAAC	60.181	47.826	29.59	25.47	42.60	3.32
1637	1760	3.494254	TTTCCACCCCCACGTGCT	61.494	61.111	10.91	0.00	32.10	4.40
1649	1777	1.541310	ATGCTCCTCGACGGTTTCCA	61.541	55.000	0.00	0.00	0.00	3.53
1654	1794	3.461773	CCCATGCTCCTCGACGGT	61.462	66.667	0.00	0.00	0.00	4.83
1812	1959	4.071423	TGAAGGCGTTCATTTGATCTTCA	58.929	39.130	17.46	3.84	37.79	3.02
1844	1992	0.177836	GAGCTCAAGCCTCCTCCTTC	59.822	60.000	9.40	0.00	43.38	3.46
1880	2028	3.276857	GCCTTCATCTTGAGCATCTTGA	58.723	45.455	0.00	0.00	34.92	3.02
1891	2039	0.615331	TGCTTCTCCGCCTTCATCTT	59.385	50.000	0.00	0.00	0.00	2.40
1953	2101	3.057526	GCGAGCACCATTTCTTTTTACCT	60.058	43.478	0.00	0.00	0.00	3.08
1955	2103	4.160736	AGCGAGCACCATTTCTTTTTAC	57.839	40.909	0.00	0.00	0.00	2.01
1956	2104	5.545658	CTAGCGAGCACCATTTCTTTTTA	57.454	39.130	0.00	0.00	0.00	1.52
1957	2105	4.425577	CTAGCGAGCACCATTTCTTTTT	57.574	40.909	0.00	0.00	0.00	1.94
1989	2138	2.709934	CCACCTTCATGATCTCCATCCT	59.290	50.000	0.00	0.00	31.94	3.24
1992	2141	3.391774	AGTCCACCTTCATGATCTCCAT	58.608	45.455	0.00	0.00	35.44	3.41
2041	2194	3.679389	ACTTGCATCTTCTCGAACCATT	58.321	40.909	0.00	0.00	0.00	3.16
2180	2337	2.558286	GCGCCATGCCAGCACATAT	61.558	57.895	0.00	0.00	37.76	1.78
2195	2418	2.456119	CCAGAGTTCATGTCGGCGC	61.456	63.158	0.00	0.00	0.00	6.53
2247	2490	7.234577	TCCACATACAAATTTTAAAAGGCTCCT	59.765	33.333	6.79	0.00	0.00	3.69
2248	2491	7.382898	TCCACATACAAATTTTAAAAGGCTCC	58.617	34.615	6.79	0.00	0.00	4.70
2267	2510	5.412594	GTGCCGATACATTTCATATCCACAT	59.587	40.000	0.00	0.00	0.00	3.21
2274	2517	3.558006	CCAACGTGCCGATACATTTCATA	59.442	43.478	0.00	0.00	0.00	2.15
2283	2526	2.507547	GCGTCCAACGTGCCGATA	60.508	61.111	0.00	0.00	44.73	2.92
2290	2534	0.955428	ATCAGCAATGCGTCCAACGT	60.955	50.000	0.00	0.00	44.73	3.99
2302	2546	7.436118	GCTCCATTTTATATTTGGATCAGCAA	58.564	34.615	0.00	0.00	38.79	3.91
2303	2547	6.294120	CGCTCCATTTTATATTTGGATCAGCA	60.294	38.462	0.00	0.00	38.79	4.41
2306	2550	6.303054	TCCGCTCCATTTTATATTTGGATCA	58.697	36.000	0.00	0.00	38.79	2.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.