Multiple sequence alignment - TraesCS2A01G461700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G461700 chr2A 100.000 3239 0 0 1 3239 707566809 707570047 0.000000e+00 5982
1 TraesCS2A01G461700 chr2A 91.228 285 22 3 1 283 160843868 160844151 5.070000e-103 385
2 TraesCS2A01G461700 chr2A 90.559 286 22 2 1 281 262129706 262129421 1.100000e-99 374
3 TraesCS2A01G461700 chr2D 90.894 3020 129 69 288 3237 568090510 568093453 0.000000e+00 3919
4 TraesCS2A01G461700 chr2D 87.907 1720 92 56 288 1952 568105277 568106935 0.000000e+00 1917
5 TraesCS2A01G461700 chr2B 89.778 2749 139 53 288 2970 680597019 680599691 0.000000e+00 3389
6 TraesCS2A01G461700 chr4A 93.662 284 18 0 1 284 40448576 40448293 2.990000e-115 425
7 TraesCS2A01G461700 chr5A 92.553 282 19 2 1 281 534361474 534361754 1.400000e-108 403
8 TraesCS2A01G461700 chr5A 92.171 281 22 0 1 281 673698936 673699216 6.510000e-107 398
9 TraesCS2A01G461700 chr5A 90.845 284 22 2 1 281 691701833 691702115 8.480000e-101 377
10 TraesCS2A01G461700 chr7A 90.941 287 23 3 2 287 62470257 62469973 1.820000e-102 383
11 TraesCS2A01G461700 chr3A 90.972 288 21 3 1 283 614561617 614561330 1.820000e-102 383
12 TraesCS2A01G461700 chr1A 90.813 283 21 2 1 283 542821097 542821374 1.100000e-99 374
13 TraesCS2A01G461700 chrUn 82.547 424 31 17 984 1374 477382456 477382043 1.860000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G461700 chr2A 707566809 707570047 3238 False 5982 5982 100.000 1 3239 1 chr2A.!!$F2 3238
1 TraesCS2A01G461700 chr2D 568090510 568093453 2943 False 3919 3919 90.894 288 3237 1 chr2D.!!$F1 2949
2 TraesCS2A01G461700 chr2D 568105277 568106935 1658 False 1917 1917 87.907 288 1952 1 chr2D.!!$F2 1664
3 TraesCS2A01G461700 chr2B 680597019 680599691 2672 False 3389 3389 89.778 288 2970 1 chr2B.!!$F1 2682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.042274 GTTTGCATTGTGTTTGCGCC 60.042 50.0 4.18 0.0 43.10 6.53 F
152 153 0.382158 TGTGTTTGCGCCGAATTTGA 59.618 45.0 4.18 0.0 0.00 2.69 F
1119 1165 0.036022 TGGATCACATCACAACCGCA 59.964 50.0 0.00 0.0 0.00 5.69 F
1330 1403 0.102120 CGCCTGATCTGTGGTCTCTC 59.898 60.0 0.00 0.0 0.00 3.20 F
1474 1549 0.179009 AGGTTCACTGTGTGCATGCT 60.179 50.0 20.33 0.0 32.98 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1100 1144 0.036022 TGCGGTTGTGATGTGATCCA 59.964 50.000 0.0 0.0 0.00 3.41 R
1532 1609 0.038021 TTTGACAGGCTAGCCATGCA 59.962 50.000 34.7 24.3 38.92 3.96 R
2058 2151 1.005294 CGTTCAACTGTCCGGGTACG 61.005 60.000 0.0 0.0 40.55 3.67 R
2154 2253 1.222113 GCCTACAACTCCCCTCTGC 59.778 63.158 0.0 0.0 0.00 4.26 R
2320 2421 1.274712 CCTTGGGCACTTCTCTCTCT 58.725 55.000 0.0 0.0 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.433879 CGGTTCTACAGCCTCCTCG 59.566 63.158 0.00 0.00 0.00 4.63
19 20 1.817209 GGTTCTACAGCCTCCTCGG 59.183 63.158 0.00 0.00 0.00 4.63
30 31 1.379527 CCTCCTCGGCATGTAAAACC 58.620 55.000 0.00 0.00 0.00 3.27
32 33 1.022451 TCCTCGGCATGTAAAACCGC 61.022 55.000 4.05 0.00 46.49 5.68
33 34 1.060308 CTCGGCATGTAAAACCGCG 59.940 57.895 0.00 0.00 46.49 6.46
34 35 1.632046 CTCGGCATGTAAAACCGCGT 61.632 55.000 4.92 0.00 46.49 6.01
35 36 1.511043 CGGCATGTAAAACCGCGTG 60.511 57.895 4.92 0.00 40.55 5.34
36 37 1.154112 GGCATGTAAAACCGCGTGG 60.154 57.895 14.93 14.93 42.84 4.94
37 38 1.154112 GCATGTAAAACCGCGTGGG 60.154 57.895 21.14 6.53 40.75 4.61
38 39 1.154112 CATGTAAAACCGCGTGGGC 60.154 57.895 21.14 4.51 40.62 5.36
77 78 3.464494 GGGTAGCCCGCGGTAGTT 61.464 66.667 26.12 10.37 32.13 2.24
78 79 2.580815 GGTAGCCCGCGGTAGTTT 59.419 61.111 26.12 6.86 0.00 2.66
79 80 1.078918 GGTAGCCCGCGGTAGTTTT 60.079 57.895 26.12 4.98 0.00 2.43
80 81 0.674581 GGTAGCCCGCGGTAGTTTTT 60.675 55.000 26.12 3.49 0.00 1.94
81 82 0.723414 GTAGCCCGCGGTAGTTTTTC 59.277 55.000 26.12 2.10 0.00 2.29
82 83 0.391528 TAGCCCGCGGTAGTTTTTCC 60.392 55.000 26.12 0.31 0.00 3.13
83 84 1.673337 GCCCGCGGTAGTTTTTCCT 60.673 57.895 26.12 0.00 0.00 3.36
84 85 1.239296 GCCCGCGGTAGTTTTTCCTT 61.239 55.000 26.12 0.00 0.00 3.36
85 86 1.241165 CCCGCGGTAGTTTTTCCTTT 58.759 50.000 26.12 0.00 0.00 3.11
86 87 1.610038 CCCGCGGTAGTTTTTCCTTTT 59.390 47.619 26.12 0.00 0.00 2.27
87 88 2.813172 CCCGCGGTAGTTTTTCCTTTTA 59.187 45.455 26.12 0.00 0.00 1.52
88 89 3.252944 CCCGCGGTAGTTTTTCCTTTTAA 59.747 43.478 26.12 0.00 0.00 1.52
89 90 4.261530 CCCGCGGTAGTTTTTCCTTTTAAA 60.262 41.667 26.12 0.00 0.00 1.52
90 91 5.280164 CCGCGGTAGTTTTTCCTTTTAAAA 58.720 37.500 19.50 0.00 0.00 1.52
91 92 5.747675 CCGCGGTAGTTTTTCCTTTTAAAAA 59.252 36.000 19.50 0.00 36.30 1.94
122 123 7.653523 TGTTTAAATTTGAACGAACTCGAAC 57.346 32.000 17.83 0.26 43.02 3.95
123 124 6.408611 TGTTTAAATTTGAACGAACTCGAACG 59.591 34.615 17.83 5.10 43.02 3.95
124 125 4.525411 AAATTTGAACGAACTCGAACGT 57.475 36.364 6.05 6.22 44.57 3.99
125 126 2.982919 TTTGAACGAACTCGAACGTG 57.017 45.000 6.05 0.00 42.43 4.49
126 127 1.912001 TTGAACGAACTCGAACGTGT 58.088 45.000 6.05 0.00 42.43 4.49
127 128 1.912001 TGAACGAACTCGAACGTGTT 58.088 45.000 13.01 13.01 42.43 3.32
128 129 2.261345 TGAACGAACTCGAACGTGTTT 58.739 42.857 14.03 1.51 42.43 2.83
129 130 2.028284 TGAACGAACTCGAACGTGTTTG 59.972 45.455 20.31 20.31 42.43 2.93
130 131 0.299597 ACGAACTCGAACGTGTTTGC 59.700 50.000 21.24 8.95 43.02 3.68
131 132 0.299300 CGAACTCGAACGTGTTTGCA 59.701 50.000 14.03 0.00 43.02 4.08
132 133 1.070843 CGAACTCGAACGTGTTTGCAT 60.071 47.619 14.03 0.00 43.02 3.96
133 134 2.598907 CGAACTCGAACGTGTTTGCATT 60.599 45.455 14.03 0.00 43.02 3.56
134 135 2.383298 ACTCGAACGTGTTTGCATTG 57.617 45.000 0.00 0.00 0.00 2.82
135 136 1.668751 ACTCGAACGTGTTTGCATTGT 59.331 42.857 0.00 0.00 0.00 2.71
136 137 2.036217 CTCGAACGTGTTTGCATTGTG 58.964 47.619 0.00 0.00 0.00 3.33
137 138 1.398739 TCGAACGTGTTTGCATTGTGT 59.601 42.857 0.00 0.00 0.00 3.72
138 139 2.159503 TCGAACGTGTTTGCATTGTGTT 60.160 40.909 0.00 0.00 0.00 3.32
139 140 2.596419 CGAACGTGTTTGCATTGTGTTT 59.404 40.909 0.00 0.00 0.00 2.83
140 141 3.539210 CGAACGTGTTTGCATTGTGTTTG 60.539 43.478 0.00 0.00 0.00 2.93
141 142 1.658095 ACGTGTTTGCATTGTGTTTGC 59.342 42.857 0.00 0.00 40.55 3.68
142 143 1.330989 CGTGTTTGCATTGTGTTTGCG 60.331 47.619 0.00 0.00 43.10 4.85
143 144 0.649475 TGTTTGCATTGTGTTTGCGC 59.351 45.000 0.00 0.00 43.10 6.09
144 145 0.042274 GTTTGCATTGTGTTTGCGCC 60.042 50.000 4.18 0.00 43.10 6.53
145 146 1.485838 TTTGCATTGTGTTTGCGCCG 61.486 50.000 4.18 0.00 43.10 6.46
146 147 2.050533 GCATTGTGTTTGCGCCGA 60.051 55.556 4.18 0.00 0.00 5.54
147 148 1.659954 GCATTGTGTTTGCGCCGAA 60.660 52.632 4.18 0.00 0.00 4.30
148 149 1.008361 GCATTGTGTTTGCGCCGAAT 61.008 50.000 4.18 0.00 0.00 3.34
149 150 1.417372 CATTGTGTTTGCGCCGAATT 58.583 45.000 4.18 0.00 0.00 2.17
150 151 1.791785 CATTGTGTTTGCGCCGAATTT 59.208 42.857 4.18 0.00 0.00 1.82
151 152 1.203928 TTGTGTTTGCGCCGAATTTG 58.796 45.000 4.18 0.00 0.00 2.32
152 153 0.382158 TGTGTTTGCGCCGAATTTGA 59.618 45.000 4.18 0.00 0.00 2.69
153 154 1.202302 TGTGTTTGCGCCGAATTTGAA 60.202 42.857 4.18 0.00 0.00 2.69
154 155 1.189227 GTGTTTGCGCCGAATTTGAAC 59.811 47.619 4.18 0.00 0.00 3.18
155 156 1.202302 TGTTTGCGCCGAATTTGAACA 60.202 42.857 4.18 0.49 0.00 3.18
156 157 2.058057 GTTTGCGCCGAATTTGAACAT 58.942 42.857 4.18 0.00 0.00 2.71
157 158 2.430546 TTGCGCCGAATTTGAACATT 57.569 40.000 4.18 0.00 0.00 2.71
158 159 2.430546 TGCGCCGAATTTGAACATTT 57.569 40.000 4.18 0.00 0.00 2.32
159 160 2.748605 TGCGCCGAATTTGAACATTTT 58.251 38.095 4.18 0.00 0.00 1.82
160 161 3.902150 TGCGCCGAATTTGAACATTTTA 58.098 36.364 4.18 0.00 0.00 1.52
161 162 4.299155 TGCGCCGAATTTGAACATTTTAA 58.701 34.783 4.18 0.00 0.00 1.52
162 163 4.745125 TGCGCCGAATTTGAACATTTTAAA 59.255 33.333 4.18 0.00 0.00 1.52
163 164 5.234329 TGCGCCGAATTTGAACATTTTAAAA 59.766 32.000 4.18 2.51 0.00 1.52
164 165 6.130058 GCGCCGAATTTGAACATTTTAAAAA 58.870 32.000 4.44 0.00 0.00 1.94
165 166 6.084421 GCGCCGAATTTGAACATTTTAAAAAC 59.916 34.615 4.44 0.00 0.00 2.43
166 167 6.571887 CGCCGAATTTGAACATTTTAAAAACC 59.428 34.615 4.44 0.00 0.00 3.27
167 168 6.853872 GCCGAATTTGAACATTTTAAAAACCC 59.146 34.615 4.44 0.00 0.00 4.11
168 169 7.066505 CCGAATTTGAACATTTTAAAAACCCG 58.933 34.615 4.44 0.00 0.00 5.28
169 170 7.254488 CCGAATTTGAACATTTTAAAAACCCGT 60.254 33.333 4.44 0.00 0.00 5.28
170 171 7.580882 CGAATTTGAACATTTTAAAAACCCGTG 59.419 33.333 4.44 0.94 0.00 4.94
171 172 6.663944 TTTGAACATTTTAAAAACCCGTGG 57.336 33.333 4.44 0.00 0.00 4.94
172 173 4.694339 TGAACATTTTAAAAACCCGTGGG 58.306 39.130 4.44 2.58 42.03 4.61
214 215 4.708386 CCCCCAGTGCGCGGTTTA 62.708 66.667 8.83 0.00 0.00 2.01
215 216 2.670251 CCCCAGTGCGCGGTTTAA 60.670 61.111 8.83 0.00 0.00 1.52
216 217 2.559330 CCCAGTGCGCGGTTTAAC 59.441 61.111 8.83 0.00 0.00 2.01
217 218 2.172419 CCAGTGCGCGGTTTAACG 59.828 61.111 8.83 0.00 0.00 3.18
242 243 4.129148 GCCCCCAGGAGGCGATTT 62.129 66.667 0.00 0.00 41.41 2.17
243 244 2.683475 CCCCCAGGAGGCGATTTT 59.317 61.111 0.00 0.00 33.47 1.82
244 245 1.000359 CCCCCAGGAGGCGATTTTT 60.000 57.895 0.00 0.00 33.47 1.94
273 274 4.176752 GGGGGCTAACGGCTGGAG 62.177 72.222 0.00 0.00 41.46 3.86
274 275 3.081409 GGGGCTAACGGCTGGAGA 61.081 66.667 0.00 0.00 41.46 3.71
275 276 2.444256 GGGGCTAACGGCTGGAGAT 61.444 63.158 0.00 0.00 41.46 2.75
276 277 1.227674 GGGCTAACGGCTGGAGATG 60.228 63.158 0.00 0.00 41.46 2.90
277 278 1.889573 GGCTAACGGCTGGAGATGC 60.890 63.158 0.00 0.00 41.46 3.91
278 279 1.889573 GCTAACGGCTGGAGATGCC 60.890 63.158 0.00 0.00 46.42 4.40
283 284 4.887615 GGCTGGAGATGCCCTAAC 57.112 61.111 0.00 0.00 44.32 2.34
284 285 1.915228 GGCTGGAGATGCCCTAACA 59.085 57.895 0.00 0.00 44.32 2.41
285 286 0.464554 GGCTGGAGATGCCCTAACAC 60.465 60.000 0.00 0.00 44.32 3.32
286 287 0.464554 GCTGGAGATGCCCTAACACC 60.465 60.000 0.00 0.00 34.97 4.16
289 290 2.366916 CTGGAGATGCCCTAACACCTAG 59.633 54.545 0.00 0.00 34.97 3.02
294 295 2.544844 TGCCCTAACACCTAGCTAGT 57.455 50.000 19.31 5.12 0.00 2.57
448 449 4.108299 CCACATGGGCGCCCTACA 62.108 66.667 43.34 26.79 36.94 2.74
501 503 1.863454 GCAGCTGACGATTACTCCATG 59.137 52.381 20.43 0.00 0.00 3.66
503 505 1.759445 AGCTGACGATTACTCCATGCT 59.241 47.619 0.00 0.00 0.00 3.79
644 647 8.345724 AGCTTATAAAATCAGATGCCATAAGG 57.654 34.615 14.34 0.00 38.23 2.69
789 793 2.611292 CAGTTTGGCACTGCTAGATAGC 59.389 50.000 4.87 4.87 46.70 2.97
790 794 3.681034 CAGTTTGGCACTGCTAGATAGCT 60.681 47.826 12.76 0.00 46.70 3.32
791 795 4.442052 CAGTTTGGCACTGCTAGATAGCTA 60.442 45.833 12.76 0.00 46.70 3.32
855 869 1.204467 CTCAGCAAGGAGACCTCAGAC 59.796 57.143 0.00 0.00 37.05 3.51
918 946 6.525629 AGCTTTTGTTCTTAGCTACTCTTCA 58.474 36.000 0.00 0.00 43.08 3.02
921 949 8.293157 GCTTTTGTTCTTAGCTACTCTTCATTT 58.707 33.333 0.00 0.00 32.26 2.32
922 950 9.604626 CTTTTGTTCTTAGCTACTCTTCATTTG 57.395 33.333 0.00 0.00 0.00 2.32
923 951 8.677148 TTTGTTCTTAGCTACTCTTCATTTGT 57.323 30.769 0.00 0.00 0.00 2.83
924 952 9.772973 TTTGTTCTTAGCTACTCTTCATTTGTA 57.227 29.630 0.00 0.00 0.00 2.41
925 953 8.758633 TGTTCTTAGCTACTCTTCATTTGTAC 57.241 34.615 0.00 0.00 0.00 2.90
926 954 8.585881 TGTTCTTAGCTACTCTTCATTTGTACT 58.414 33.333 0.00 0.00 0.00 2.73
927 955 9.078753 GTTCTTAGCTACTCTTCATTTGTACTC 57.921 37.037 0.00 0.00 0.00 2.59
928 956 8.582657 TCTTAGCTACTCTTCATTTGTACTCT 57.417 34.615 0.00 0.00 0.00 3.24
929 957 8.462811 TCTTAGCTACTCTTCATTTGTACTCTG 58.537 37.037 0.00 0.00 0.00 3.35
930 958 5.971763 AGCTACTCTTCATTTGTACTCTGG 58.028 41.667 0.00 0.00 0.00 3.86
934 962 3.997021 CTCTTCATTTGTACTCTGGCGTT 59.003 43.478 0.00 0.00 0.00 4.84
996 1028 4.470664 AGGTGAAGAAGCTCATCAAGATCT 59.529 41.667 0.00 0.00 27.29 2.75
1020 1052 2.058595 GGAAGACGGCAGGGCTCTA 61.059 63.158 0.00 0.00 0.00 2.43
1100 1144 4.348168 AGAAAGGGTAGGTTGCATATCGAT 59.652 41.667 2.16 2.16 0.00 3.59
1119 1165 0.036022 TGGATCACATCACAACCGCA 59.964 50.000 0.00 0.00 0.00 5.69
1157 1214 1.528586 CGTGTTCCTGAGCTTTCTGTG 59.471 52.381 0.00 0.00 0.00 3.66
1161 1218 1.131638 TCCTGAGCTTTCTGTGTGGT 58.868 50.000 0.00 0.00 0.00 4.16
1164 1221 2.689983 CCTGAGCTTTCTGTGTGGTTTT 59.310 45.455 0.00 0.00 0.00 2.43
1254 1311 2.742053 CCAAGGTCCACGTAATGAACAG 59.258 50.000 0.00 0.00 0.00 3.16
1255 1312 2.742053 CAAGGTCCACGTAATGAACAGG 59.258 50.000 0.00 0.00 0.00 4.00
1256 1313 1.084289 GGTCCACGTAATGAACAGGC 58.916 55.000 0.00 0.00 0.00 4.85
1257 1314 1.609580 GGTCCACGTAATGAACAGGCA 60.610 52.381 0.00 0.00 0.00 4.75
1284 1343 4.322650 CCCATCTTGGATCTTCTAGCTAGC 60.323 50.000 16.35 6.62 40.96 3.42
1285 1344 4.322650 CCATCTTGGATCTTCTAGCTAGCC 60.323 50.000 16.35 11.24 40.96 3.93
1306 1379 4.442706 CCAGTGTATATTTCTTGCCGAGT 58.557 43.478 0.00 0.00 0.00 4.18
1329 1402 0.323816 TCGCCTGATCTGTGGTCTCT 60.324 55.000 0.00 0.00 0.00 3.10
1330 1403 0.102120 CGCCTGATCTGTGGTCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
1467 1542 9.093458 TCATATATATGATCAGGTTCACTGTGT 57.907 33.333 19.44 0.00 41.47 3.72
1468 1543 9.148104 CATATATATGATCAGGTTCACTGTGTG 57.852 37.037 16.44 0.00 40.83 3.82
1474 1549 0.179009 AGGTTCACTGTGTGCATGCT 60.179 50.000 20.33 0.00 32.98 3.79
1484 1559 2.549329 TGTGTGCATGCTTGTAGAGTTG 59.451 45.455 20.33 0.00 0.00 3.16
1528 1605 8.713737 TGCTATCTATTCTTATGCATCATGTC 57.286 34.615 0.19 0.00 0.00 3.06
1529 1606 8.316214 TGCTATCTATTCTTATGCATCATGTCA 58.684 33.333 0.19 0.00 0.00 3.58
1530 1607 9.327628 GCTATCTATTCTTATGCATCATGTCAT 57.672 33.333 0.19 0.00 0.00 3.06
1535 1612 4.200874 TCTTATGCATCATGTCATGTGCA 58.799 39.130 28.92 28.92 44.75 4.57
1537 1614 2.861462 TGCATCATGTCATGTGCATG 57.139 45.000 25.87 17.94 43.55 4.06
1561 1638 6.380846 TGGCTAGCCTGTCAAAATTAATTCAT 59.619 34.615 33.07 0.00 36.94 2.57
1743 1836 3.112786 ATGGGGAAGGGGATGGCC 61.113 66.667 0.00 0.00 0.00 5.36
1911 2004 1.028868 GCCAGATGCAGAACCACCTC 61.029 60.000 0.00 0.00 40.77 3.85
1981 2074 1.216175 AGCTCTACACCCCGGTATGTA 59.784 52.381 12.95 12.95 0.00 2.29
2036 2129 9.752961 TTTTATGCTAATTGATTCATCCATGTG 57.247 29.630 0.00 0.00 0.00 3.21
2047 2140 7.537715 TGATTCATCCATGTGTTTATGTCAAC 58.462 34.615 0.00 0.00 0.00 3.18
2051 2144 7.164803 TCATCCATGTGTTTATGTCAACTGTA 58.835 34.615 0.00 0.00 0.00 2.74
2058 2151 6.183360 TGTGTTTATGTCAACTGTAAACCACC 60.183 38.462 13.83 7.23 37.46 4.61
2063 2156 2.802247 GTCAACTGTAAACCACCGTACC 59.198 50.000 0.00 0.00 0.00 3.34
2089 2188 3.994392 ACAGTTGAACGGCATTACTACTG 59.006 43.478 0.00 0.00 40.09 2.74
2241 2340 3.624861 CCTACAACTTCATGGAGTGATGC 59.375 47.826 7.62 0.00 36.54 3.91
2276 2377 4.706035 AGCCACTGATGAAGAGATCAATC 58.294 43.478 0.00 0.00 42.54 2.67
2360 2462 6.210172 AGGGGAATGATGAATGTGATGTAT 57.790 37.500 0.00 0.00 0.00 2.29
2391 2493 7.908193 AACTTGCTAGTTGTGTTTAATTTCG 57.092 32.000 12.87 0.00 42.91 3.46
2441 2543 0.107993 TGCTCCGAGCTTTCCTCATG 60.108 55.000 20.87 0.00 42.97 3.07
2444 2546 1.480137 CTCCGAGCTTTCCTCATGTCT 59.520 52.381 0.00 0.00 40.78 3.41
2550 2652 0.886563 GCAGGGATAGCATGCAATCC 59.113 55.000 21.98 15.02 40.89 3.01
2971 3074 7.315142 CCAAATATGTCAGCACTAATGTTGTT 58.685 34.615 0.00 0.00 38.18 2.83
2972 3075 8.458052 CCAAATATGTCAGCACTAATGTTGTTA 58.542 33.333 0.00 0.00 38.18 2.41
3080 3189 7.012515 TGCAACTTCAGTAAAGAAAACGGATTA 59.987 33.333 0.00 0.00 38.44 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.433879 CGAGGAGGCTGTAGAACCG 59.566 63.158 0.00 0.00 0.00 4.44
1 2 1.817209 CCGAGGAGGCTGTAGAACC 59.183 63.158 0.00 0.00 0.00 3.62
11 12 1.379527 GGTTTTACATGCCGAGGAGG 58.620 55.000 0.00 0.00 44.97 4.30
18 19 1.154112 CCACGCGGTTTTACATGCC 60.154 57.895 12.47 0.00 0.00 4.40
19 20 1.154112 CCCACGCGGTTTTACATGC 60.154 57.895 12.47 0.00 0.00 4.06
20 21 1.154112 GCCCACGCGGTTTTACATG 60.154 57.895 12.47 0.00 0.00 3.21
21 22 3.270000 GCCCACGCGGTTTTACAT 58.730 55.556 12.47 0.00 0.00 2.29
58 59 3.603671 CTACCGCGGGCTACCCTC 61.604 72.222 31.76 0.00 42.67 4.30
59 60 3.970746 AACTACCGCGGGCTACCCT 62.971 63.158 31.76 9.01 42.67 4.34
60 61 2.526450 AAAACTACCGCGGGCTACCC 62.526 60.000 31.76 0.00 41.09 3.69
61 62 0.674581 AAAAACTACCGCGGGCTACC 60.675 55.000 31.76 0.00 0.00 3.18
62 63 0.723414 GAAAAACTACCGCGGGCTAC 59.277 55.000 31.76 8.31 0.00 3.58
63 64 0.391528 GGAAAAACTACCGCGGGCTA 60.392 55.000 31.76 13.05 0.00 3.93
64 65 1.673337 GGAAAAACTACCGCGGGCT 60.673 57.895 31.76 12.49 0.00 5.19
65 66 1.239296 AAGGAAAAACTACCGCGGGC 61.239 55.000 31.76 7.49 0.00 6.13
66 67 1.241165 AAAGGAAAAACTACCGCGGG 58.759 50.000 31.76 15.62 0.00 6.13
67 68 4.486574 TTAAAAGGAAAAACTACCGCGG 57.513 40.909 26.86 26.86 0.00 6.46
68 69 6.809297 TTTTTAAAAGGAAAAACTACCGCG 57.191 33.333 0.00 0.00 34.23 6.46
96 97 9.372541 GTTCGAGTTCGTTCAAATTTAAACATA 57.627 29.630 5.09 0.00 40.80 2.29
97 98 7.111041 CGTTCGAGTTCGTTCAAATTTAAACAT 59.889 33.333 5.09 0.00 40.80 2.71
98 99 6.408611 CGTTCGAGTTCGTTCAAATTTAAACA 59.591 34.615 5.09 0.00 40.80 2.83
99 100 6.408898 ACGTTCGAGTTCGTTCAAATTTAAAC 59.591 34.615 1.07 0.00 40.80 2.01
100 101 6.408611 CACGTTCGAGTTCGTTCAAATTTAAA 59.591 34.615 9.05 0.00 38.23 1.52
101 102 5.897518 CACGTTCGAGTTCGTTCAAATTTAA 59.102 36.000 9.05 0.00 38.23 1.52
102 103 5.005586 ACACGTTCGAGTTCGTTCAAATTTA 59.994 36.000 9.05 0.00 38.23 1.40
103 104 4.201744 ACACGTTCGAGTTCGTTCAAATTT 60.202 37.500 9.05 0.00 38.23 1.82
104 105 3.307782 ACACGTTCGAGTTCGTTCAAATT 59.692 39.130 9.05 0.00 38.23 1.82
105 106 2.861935 ACACGTTCGAGTTCGTTCAAAT 59.138 40.909 9.05 0.00 38.23 2.32
106 107 2.261345 ACACGTTCGAGTTCGTTCAAA 58.739 42.857 9.05 0.00 38.23 2.69
107 108 1.912001 ACACGTTCGAGTTCGTTCAA 58.088 45.000 9.05 0.00 38.23 2.69
108 109 1.912001 AACACGTTCGAGTTCGTTCA 58.088 45.000 9.05 0.00 38.23 3.18
109 110 2.611070 CAAACACGTTCGAGTTCGTTC 58.389 47.619 8.23 0.00 38.23 3.95
110 111 1.267186 GCAAACACGTTCGAGTTCGTT 60.267 47.619 8.23 0.00 38.23 3.85
111 112 0.299597 GCAAACACGTTCGAGTTCGT 59.700 50.000 8.23 6.57 40.99 3.85
112 113 0.299300 TGCAAACACGTTCGAGTTCG 59.701 50.000 8.23 0.00 41.45 3.95
113 114 2.663279 ATGCAAACACGTTCGAGTTC 57.337 45.000 8.23 0.00 0.00 3.01
114 115 2.096819 ACAATGCAAACACGTTCGAGTT 59.903 40.909 0.00 0.47 0.00 3.01
115 116 1.668751 ACAATGCAAACACGTTCGAGT 59.331 42.857 0.00 0.00 0.00 4.18
116 117 2.036217 CACAATGCAAACACGTTCGAG 58.964 47.619 0.00 0.00 0.00 4.04
117 118 1.398739 ACACAATGCAAACACGTTCGA 59.601 42.857 0.00 0.00 0.00 3.71
118 119 1.821336 ACACAATGCAAACACGTTCG 58.179 45.000 0.00 0.00 0.00 3.95
119 120 3.780635 GCAAACACAATGCAAACACGTTC 60.781 43.478 0.00 0.00 43.29 3.95
120 121 2.093467 GCAAACACAATGCAAACACGTT 59.907 40.909 0.00 0.00 43.29 3.99
121 122 1.658095 GCAAACACAATGCAAACACGT 59.342 42.857 0.00 0.00 43.29 4.49
122 123 1.330989 CGCAAACACAATGCAAACACG 60.331 47.619 0.00 0.00 44.01 4.49
123 124 1.591871 GCGCAAACACAATGCAAACAC 60.592 47.619 0.30 0.00 44.01 3.32
124 125 0.649475 GCGCAAACACAATGCAAACA 59.351 45.000 0.30 0.00 44.01 2.83
125 126 0.042274 GGCGCAAACACAATGCAAAC 60.042 50.000 10.83 0.00 44.01 2.93
126 127 1.485838 CGGCGCAAACACAATGCAAA 61.486 50.000 10.83 0.00 44.01 3.68
127 128 1.948138 CGGCGCAAACACAATGCAA 60.948 52.632 10.83 0.00 44.01 4.08
128 129 2.341807 TTCGGCGCAAACACAATGCA 62.342 50.000 10.83 0.00 44.01 3.96
129 130 1.008361 ATTCGGCGCAAACACAATGC 61.008 50.000 10.83 0.00 40.41 3.56
130 131 1.417372 AATTCGGCGCAAACACAATG 58.583 45.000 10.83 0.00 0.00 2.82
131 132 1.791785 CAAATTCGGCGCAAACACAAT 59.208 42.857 10.83 0.00 0.00 2.71
132 133 1.202302 TCAAATTCGGCGCAAACACAA 60.202 42.857 10.83 0.00 0.00 3.33
133 134 0.382158 TCAAATTCGGCGCAAACACA 59.618 45.000 10.83 0.00 0.00 3.72
134 135 1.189227 GTTCAAATTCGGCGCAAACAC 59.811 47.619 10.83 0.00 0.00 3.32
135 136 1.202302 TGTTCAAATTCGGCGCAAACA 60.202 42.857 10.83 0.00 0.00 2.83
136 137 1.482278 TGTTCAAATTCGGCGCAAAC 58.518 45.000 10.83 0.00 0.00 2.93
137 138 2.430546 ATGTTCAAATTCGGCGCAAA 57.569 40.000 10.83 2.72 0.00 3.68
138 139 2.430546 AATGTTCAAATTCGGCGCAA 57.569 40.000 10.83 0.00 0.00 4.85
139 140 2.430546 AAATGTTCAAATTCGGCGCA 57.569 40.000 10.83 0.00 0.00 6.09
140 141 4.894798 TTAAAATGTTCAAATTCGGCGC 57.105 36.364 0.00 0.00 0.00 6.53
141 142 6.571887 GGTTTTTAAAATGTTCAAATTCGGCG 59.428 34.615 0.00 0.00 0.00 6.46
142 143 6.853872 GGGTTTTTAAAATGTTCAAATTCGGC 59.146 34.615 0.55 0.00 0.00 5.54
143 144 7.066505 CGGGTTTTTAAAATGTTCAAATTCGG 58.933 34.615 0.55 0.00 0.00 4.30
144 145 7.580882 CACGGGTTTTTAAAATGTTCAAATTCG 59.419 33.333 0.55 0.00 0.00 3.34
145 146 7.853437 CCACGGGTTTTTAAAATGTTCAAATTC 59.147 33.333 0.55 0.00 0.00 2.17
146 147 7.201741 CCCACGGGTTTTTAAAATGTTCAAATT 60.202 33.333 0.55 0.00 0.00 1.82
147 148 6.261158 CCCACGGGTTTTTAAAATGTTCAAAT 59.739 34.615 0.55 0.00 0.00 2.32
148 149 5.585047 CCCACGGGTTTTTAAAATGTTCAAA 59.415 36.000 0.55 0.00 0.00 2.69
149 150 5.116882 CCCACGGGTTTTTAAAATGTTCAA 58.883 37.500 0.55 0.00 0.00 2.69
150 151 4.443034 CCCCACGGGTTTTTAAAATGTTCA 60.443 41.667 0.55 0.00 38.25 3.18
151 152 4.059511 CCCCACGGGTTTTTAAAATGTTC 58.940 43.478 0.55 0.00 38.25 3.18
152 153 3.181453 CCCCCACGGGTTTTTAAAATGTT 60.181 43.478 0.55 0.00 45.50 2.71
153 154 2.369203 CCCCCACGGGTTTTTAAAATGT 59.631 45.455 0.55 0.00 45.50 2.71
154 155 3.046968 CCCCCACGGGTTTTTAAAATG 57.953 47.619 0.55 0.00 45.50 2.32
199 200 2.559330 GTTAAACCGCGCACTGGG 59.441 61.111 8.75 2.12 0.00 4.45
200 201 2.172419 CGTTAAACCGCGCACTGG 59.828 61.111 8.75 2.56 0.00 4.00
225 226 3.662117 AAAATCGCCTCCTGGGGGC 62.662 63.158 28.37 28.37 46.27 5.80
227 228 4.764143 AAAAATCGCCTCCTGGGG 57.236 55.556 0.00 0.00 46.42 4.96
256 257 4.176752 CTCCAGCCGTTAGCCCCC 62.177 72.222 0.00 0.00 45.47 5.40
257 258 2.444256 ATCTCCAGCCGTTAGCCCC 61.444 63.158 0.00 0.00 45.47 5.80
258 259 1.227674 CATCTCCAGCCGTTAGCCC 60.228 63.158 0.00 0.00 45.47 5.19
259 260 1.889573 GCATCTCCAGCCGTTAGCC 60.890 63.158 0.00 0.00 45.47 3.93
260 261 1.889573 GGCATCTCCAGCCGTTAGC 60.890 63.158 0.00 0.00 43.15 3.09
261 262 4.445699 GGCATCTCCAGCCGTTAG 57.554 61.111 0.00 0.00 43.15 2.34
267 268 0.464554 GGTGTTAGGGCATCTCCAGC 60.465 60.000 0.00 0.00 36.21 4.85
268 269 1.207791 AGGTGTTAGGGCATCTCCAG 58.792 55.000 0.00 0.00 36.21 3.86
269 270 2.398588 CTAGGTGTTAGGGCATCTCCA 58.601 52.381 0.00 0.00 36.21 3.86
270 271 1.070914 GCTAGGTGTTAGGGCATCTCC 59.929 57.143 0.00 0.00 31.45 3.71
271 272 2.043227 AGCTAGGTGTTAGGGCATCTC 58.957 52.381 0.00 0.00 31.45 2.75
272 273 2.182516 AGCTAGGTGTTAGGGCATCT 57.817 50.000 0.00 0.00 33.83 2.90
273 274 2.966516 ACTAGCTAGGTGTTAGGGCATC 59.033 50.000 24.35 0.00 34.34 3.91
274 275 2.700897 CACTAGCTAGGTGTTAGGGCAT 59.299 50.000 24.35 0.00 34.34 4.40
275 276 2.108168 CACTAGCTAGGTGTTAGGGCA 58.892 52.381 24.35 0.00 34.34 5.36
276 277 2.385803 TCACTAGCTAGGTGTTAGGGC 58.614 52.381 24.35 0.00 33.58 5.19
277 278 4.279145 TCTTCACTAGCTAGGTGTTAGGG 58.721 47.826 24.35 0.00 34.67 3.53
278 279 5.916661 TTCTTCACTAGCTAGGTGTTAGG 57.083 43.478 24.35 8.03 34.34 2.69
279 280 7.489757 GTCATTTCTTCACTAGCTAGGTGTTAG 59.510 40.741 24.35 17.88 36.25 2.34
280 281 7.039293 TGTCATTTCTTCACTAGCTAGGTGTTA 60.039 37.037 24.35 11.29 36.25 2.41
281 282 6.166982 GTCATTTCTTCACTAGCTAGGTGTT 58.833 40.000 24.35 0.40 36.25 3.32
282 283 5.246203 TGTCATTTCTTCACTAGCTAGGTGT 59.754 40.000 24.35 1.76 36.25 4.16
283 284 5.578727 GTGTCATTTCTTCACTAGCTAGGTG 59.421 44.000 24.35 18.36 36.17 4.00
284 285 5.337652 GGTGTCATTTCTTCACTAGCTAGGT 60.338 44.000 24.35 7.77 33.30 3.08
285 286 5.112686 GGTGTCATTTCTTCACTAGCTAGG 58.887 45.833 24.35 13.33 33.30 3.02
286 287 5.112686 GGGTGTCATTTCTTCACTAGCTAG 58.887 45.833 19.44 19.44 33.30 3.42
289 290 3.674997 TGGGTGTCATTTCTTCACTAGC 58.325 45.455 0.00 0.00 33.30 3.42
294 295 6.408548 GGAGAGATATGGGTGTCATTTCTTCA 60.409 42.308 0.00 0.00 41.87 3.02
448 449 5.867330 TCTGATGGGATGTTTGCAATTTTT 58.133 33.333 0.00 0.00 0.00 1.94
501 503 1.668151 GGTCACTTGGTCCGTCAGC 60.668 63.158 0.00 0.00 0.00 4.26
503 505 0.757561 TCTGGTCACTTGGTCCGTCA 60.758 55.000 0.00 0.00 0.00 4.35
644 647 0.243636 GCCGGCATGGTATTTATGGC 59.756 55.000 24.80 0.00 44.79 4.40
670 673 1.106944 CGACCCTGCACCAACCTTTT 61.107 55.000 0.00 0.00 0.00 2.27
789 793 6.095580 TCCTTATGAACCGATGCTAGCTATAG 59.904 42.308 17.23 8.08 0.00 1.31
790 794 5.949952 TCCTTATGAACCGATGCTAGCTATA 59.050 40.000 17.23 0.00 0.00 1.31
791 795 4.772624 TCCTTATGAACCGATGCTAGCTAT 59.227 41.667 17.23 7.81 0.00 2.97
855 869 4.092116 ACCTTCTTCTTCCTCTTTGGTG 57.908 45.455 0.00 0.00 37.07 4.17
918 946 4.207891 AGATCAACGCCAGAGTACAAAT 57.792 40.909 0.00 0.00 0.00 2.32
921 949 2.299013 ACAAGATCAACGCCAGAGTACA 59.701 45.455 0.00 0.00 0.00 2.90
922 950 2.960819 ACAAGATCAACGCCAGAGTAC 58.039 47.619 0.00 0.00 0.00 2.73
923 951 3.585862 GAACAAGATCAACGCCAGAGTA 58.414 45.455 0.00 0.00 0.00 2.59
924 952 2.417719 GAACAAGATCAACGCCAGAGT 58.582 47.619 0.00 0.00 0.00 3.24
925 953 1.391485 CGAACAAGATCAACGCCAGAG 59.609 52.381 0.00 0.00 0.00 3.35
926 954 1.000394 TCGAACAAGATCAACGCCAGA 60.000 47.619 0.00 0.00 0.00 3.86
927 955 1.428448 TCGAACAAGATCAACGCCAG 58.572 50.000 0.00 0.00 0.00 4.85
928 956 2.093306 ATCGAACAAGATCAACGCCA 57.907 45.000 0.00 0.00 0.00 5.69
929 957 2.159627 ACAATCGAACAAGATCAACGCC 59.840 45.455 0.00 0.00 0.00 5.68
930 958 3.455619 ACAATCGAACAAGATCAACGC 57.544 42.857 0.00 0.00 0.00 4.84
996 1028 1.617018 CCCTGCCGTCTTCCATCAGA 61.617 60.000 0.00 0.00 0.00 3.27
1065 1097 6.133356 ACCTACCCTTTCTGAAAAATTGTGA 58.867 36.000 4.18 0.00 0.00 3.58
1100 1144 0.036022 TGCGGTTGTGATGTGATCCA 59.964 50.000 0.00 0.00 0.00 3.41
1111 1157 2.099098 GCTAATTAATGGCTGCGGTTGT 59.901 45.455 0.00 0.00 0.00 3.32
1113 1159 2.374184 TGCTAATTAATGGCTGCGGTT 58.626 42.857 12.73 0.00 0.00 4.44
1116 1162 3.665409 CGAAATGCTAATTAATGGCTGCG 59.335 43.478 12.73 8.38 0.00 5.18
1119 1165 5.835113 ACACGAAATGCTAATTAATGGCT 57.165 34.783 12.73 0.00 0.00 4.75
1164 1221 9.350951 TGATCTTATCACGTCTCCTCTATAAAA 57.649 33.333 0.00 0.00 33.59 1.52
1168 1225 6.072948 CGTTGATCTTATCACGTCTCCTCTAT 60.073 42.308 0.00 0.00 39.39 1.98
1180 1237 5.582689 TCAGCTTCTCGTTGATCTTATCA 57.417 39.130 0.00 0.00 37.55 2.15
1207 1264 3.540211 TGGAAGTAGCTCTTGCAGC 57.460 52.632 13.35 0.00 46.61 5.25
1254 1311 1.152398 ATCCAAGATGGGGCATGCC 60.152 57.895 29.47 29.47 38.32 4.40
1255 1312 0.178970 AGATCCAAGATGGGGCATGC 60.179 55.000 9.90 9.90 38.32 4.06
1256 1313 2.158505 AGAAGATCCAAGATGGGGCATG 60.159 50.000 0.00 0.00 38.32 4.06
1257 1314 2.141911 AGAAGATCCAAGATGGGGCAT 58.858 47.619 0.00 0.00 38.32 4.40
1284 1343 4.442706 ACTCGGCAAGAAATATACACTGG 58.557 43.478 0.00 0.00 0.00 4.00
1285 1344 5.812642 AGAACTCGGCAAGAAATATACACTG 59.187 40.000 0.00 0.00 0.00 3.66
1306 1379 0.976641 ACCACAGATCAGGCGAAGAA 59.023 50.000 0.00 0.00 0.00 2.52
1329 1402 8.195436 CCTTGTCCGTCTAATTAAATCAGTAGA 58.805 37.037 0.00 0.00 0.00 2.59
1330 1403 7.980099 ACCTTGTCCGTCTAATTAAATCAGTAG 59.020 37.037 0.00 0.00 0.00 2.57
1375 1448 4.192317 GGAGCGATTTCAGGTAGTCAATT 58.808 43.478 0.00 0.00 0.00 2.32
1378 1451 2.166459 CTGGAGCGATTTCAGGTAGTCA 59.834 50.000 0.00 0.00 0.00 3.41
1462 1537 2.420642 ACTCTACAAGCATGCACACAG 58.579 47.619 21.98 11.44 0.00 3.66
1464 1539 2.549754 ACAACTCTACAAGCATGCACAC 59.450 45.455 21.98 0.00 0.00 3.82
1465 1540 2.849942 ACAACTCTACAAGCATGCACA 58.150 42.857 21.98 0.14 0.00 4.57
1466 1541 4.092091 GTCTACAACTCTACAAGCATGCAC 59.908 45.833 21.98 0.00 0.00 4.57
1467 1542 4.245660 GTCTACAACTCTACAAGCATGCA 58.754 43.478 21.98 0.00 0.00 3.96
1468 1543 4.245660 TGTCTACAACTCTACAAGCATGC 58.754 43.478 10.51 10.51 0.00 4.06
1469 1544 5.871524 ACATGTCTACAACTCTACAAGCATG 59.128 40.000 0.00 0.00 36.87 4.06
1474 1549 8.958119 AAAAGAACATGTCTACAACTCTACAA 57.042 30.769 0.00 0.00 34.56 2.41
1528 1605 0.750546 ACAGGCTAGCCATGCACATG 60.751 55.000 34.70 23.45 38.92 3.21
1529 1606 0.465097 GACAGGCTAGCCATGCACAT 60.465 55.000 34.70 10.26 38.92 3.21
1530 1607 1.078214 GACAGGCTAGCCATGCACA 60.078 57.895 34.70 0.00 38.92 4.57
1531 1608 0.677731 TTGACAGGCTAGCCATGCAC 60.678 55.000 34.70 23.14 38.92 4.57
1532 1609 0.038021 TTTGACAGGCTAGCCATGCA 59.962 50.000 34.70 24.30 38.92 3.96
1535 1612 6.380846 TGAATTAATTTTGACAGGCTAGCCAT 59.619 34.615 34.70 22.71 38.92 4.40
1536 1613 5.714333 TGAATTAATTTTGACAGGCTAGCCA 59.286 36.000 34.70 13.48 38.92 4.75
1537 1614 6.207691 TGAATTAATTTTGACAGGCTAGCC 57.792 37.500 27.19 27.19 0.00 3.93
1631 1718 3.930336 TCATTGCGTCTTGACTCTTGAT 58.070 40.909 0.00 0.00 0.00 2.57
1632 1719 3.385193 TCATTGCGTCTTGACTCTTGA 57.615 42.857 0.00 0.00 0.00 3.02
1633 1720 3.742882 TCTTCATTGCGTCTTGACTCTTG 59.257 43.478 0.00 0.00 0.00 3.02
1634 1721 3.995199 TCTTCATTGCGTCTTGACTCTT 58.005 40.909 0.00 0.00 0.00 2.85
1635 1722 3.667497 TCTTCATTGCGTCTTGACTCT 57.333 42.857 0.00 0.00 0.00 3.24
1636 1723 3.928992 TGATCTTCATTGCGTCTTGACTC 59.071 43.478 0.00 0.00 0.00 3.36
1637 1724 3.930336 TGATCTTCATTGCGTCTTGACT 58.070 40.909 0.00 0.00 0.00 3.41
1638 1725 4.153117 AGTTGATCTTCATTGCGTCTTGAC 59.847 41.667 0.00 0.00 0.00 3.18
2019 2112 8.751242 TGACATAAACACATGGATGAATCAATT 58.249 29.630 0.00 0.00 0.00 2.32
2036 2129 5.007921 ACGGTGGTTTACAGTTGACATAAAC 59.992 40.000 10.31 10.31 33.79 2.01
2047 2140 3.126729 CGGGTACGGTGGTTTACAG 57.873 57.895 0.00 0.00 36.18 2.74
2058 2151 1.005294 CGTTCAACTGTCCGGGTACG 61.005 60.000 0.00 0.00 40.55 3.67
2063 2156 1.234615 AATGCCGTTCAACTGTCCGG 61.235 55.000 0.00 0.00 43.22 5.14
2089 2188 4.070009 TCATCAGCCAGTCATGCATTATC 58.930 43.478 0.00 0.00 0.00 1.75
2154 2253 1.222113 GCCTACAACTCCCCTCTGC 59.778 63.158 0.00 0.00 0.00 4.26
2229 2328 1.604278 CAGCTCATGCATCACTCCATG 59.396 52.381 0.00 0.00 42.74 3.66
2320 2421 1.274712 CCTTGGGCACTTCTCTCTCT 58.725 55.000 0.00 0.00 0.00 3.10
2332 2434 1.690352 CATTCATCATTCCCCTTGGGC 59.310 52.381 0.00 0.00 43.94 5.36
2360 2462 7.852971 AAACACAACTAGCAAGTTAACTACA 57.147 32.000 8.92 0.00 44.28 2.74
2391 2493 6.072112 TCACACAGCCTCTTTTTATTTGAC 57.928 37.500 0.00 0.00 0.00 3.18
2400 2502 2.157738 GCAAGATCACACAGCCTCTTT 58.842 47.619 0.00 0.00 0.00 2.52
3171 3280 8.886080 CAATGAATTAATAAAGCAAGATCGACG 58.114 33.333 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.