Multiple sequence alignment - TraesCS2A01G460700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G460700 chr2A 100.000 3027 0 0 1 3027 706994188 706997214 0.000000e+00 5590.0
1 TraesCS2A01G460700 chr2A 97.500 40 1 0 165 204 706994316 706994355 5.420000e-08 69.4
2 TraesCS2A01G460700 chr2A 97.500 40 1 0 129 168 706994352 706994391 5.420000e-08 69.4
3 TraesCS2A01G460700 chr2D 94.319 2341 86 21 717 3027 567476990 567479313 0.000000e+00 3542.0
4 TraesCS2A01G460700 chr2D 92.991 428 21 6 165 591 567476573 567476992 1.540000e-172 616.0
5 TraesCS2A01G460700 chr2D 87.417 151 9 5 21 168 567476468 567476611 6.710000e-37 165.0
6 TraesCS2A01G460700 chr2B 92.789 1997 93 22 717 2675 680193639 680195622 0.000000e+00 2843.0
7 TraesCS2A01G460700 chr2B 93.677 427 14 6 165 591 680193228 680193641 7.120000e-176 627.0
8 TraesCS2A01G460700 chr2B 92.099 443 19 6 2601 3027 680195578 680196020 7.170000e-171 610.0
9 TraesCS2A01G460700 chr2B 88.824 170 9 5 1 166 680193101 680193264 1.840000e-47 200.0
10 TraesCS2A01G460700 chr5A 87.116 2344 169 46 723 3027 282588198 282585949 0.000000e+00 2532.0
11 TraesCS2A01G460700 chr5A 92.272 427 19 6 165 591 282588614 282588202 7.230000e-166 593.0
12 TraesCS2A01G460700 chr5A 94.161 137 5 3 584 719 427319887 427320021 3.960000e-49 206.0
13 TraesCS2A01G460700 chr5A 88.166 169 10 6 1 168 282588735 282588576 3.080000e-45 193.0
14 TraesCS2A01G460700 chr5A 97.727 44 0 1 2598 2640 282586337 282586294 1.160000e-09 75.0
15 TraesCS2A01G460700 chr5B 89.309 1983 136 34 723 2685 230248786 230246860 0.000000e+00 2418.0
16 TraesCS2A01G460700 chr5B 89.720 428 21 9 165 591 230249195 230248790 2.670000e-145 525.0
17 TraesCS2A01G460700 chr5B 92.576 229 17 0 2799 3027 230246703 230246475 2.250000e-86 329.0
18 TraesCS2A01G460700 chr5B 92.143 140 11 0 583 722 93455958 93455819 6.620000e-47 198.0
19 TraesCS2A01G460700 chr5D 89.363 1946 130 35 723 2640 214919940 214918044 0.000000e+00 2375.0
20 TraesCS2A01G460700 chr5D 89.252 428 23 9 165 591 214920349 214919944 5.790000e-142 514.0
21 TraesCS2A01G460700 chr5D 92.576 229 17 0 2799 3027 214917923 214917695 2.250000e-86 329.0
22 TraesCS2A01G460700 chr4B 79.630 810 99 45 838 1607 135211258 135212041 3.460000e-144 521.0
23 TraesCS2A01G460700 chr4B 87.234 141 13 5 387 523 135210867 135211006 4.040000e-34 156.0
24 TraesCS2A01G460700 chr4B 97.297 74 2 0 450 523 211593400 211593327 3.170000e-25 126.0
25 TraesCS2A01G460700 chr4A 79.192 817 102 40 838 1607 483951562 483950767 3.480000e-139 505.0
26 TraesCS2A01G460700 chr4A 94.118 136 7 1 588 722 695804039 695803904 3.960000e-49 206.0
27 TraesCS2A01G460700 chr4A 94.118 136 7 1 588 722 695870340 695870205 3.960000e-49 206.0
28 TraesCS2A01G460700 chr4A 86.861 137 12 6 392 523 483951949 483951814 6.760000e-32 148.0
29 TraesCS2A01G460700 chr4D 82.558 602 73 24 838 1429 95780935 95781514 4.510000e-138 501.0
30 TraesCS2A01G460700 chr4D 87.234 141 13 5 387 523 95780563 95780702 4.040000e-34 156.0
31 TraesCS2A01G460700 chrUn 92.576 229 17 0 2799 3027 476965542 476965770 2.250000e-86 329.0
32 TraesCS2A01G460700 chr3D 80.812 271 45 5 1097 1362 362069952 362069684 3.960000e-49 206.0
33 TraesCS2A01G460700 chr3D 89.726 146 14 1 573 718 412099796 412099940 5.150000e-43 185.0
34 TraesCS2A01G460700 chr7B 92.754 138 10 0 584 721 270877005 270876868 1.840000e-47 200.0
35 TraesCS2A01G460700 chr7B 90.541 148 11 3 588 735 579349390 579349534 3.080000e-45 193.0
36 TraesCS2A01G460700 chr1D 91.724 145 10 2 574 718 488630173 488630315 1.840000e-47 200.0
37 TraesCS2A01G460700 chr1B 92.199 141 11 0 578 718 372226523 372226383 1.840000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G460700 chr2A 706994188 706997214 3026 False 1909.600000 5590 98.333333 1 3027 3 chr2A.!!$F1 3026
1 TraesCS2A01G460700 chr2D 567476468 567479313 2845 False 1441.000000 3542 91.575667 21 3027 3 chr2D.!!$F1 3006
2 TraesCS2A01G460700 chr2B 680193101 680196020 2919 False 1070.000000 2843 91.847250 1 3027 4 chr2B.!!$F1 3026
3 TraesCS2A01G460700 chr5A 282585949 282588735 2786 True 848.250000 2532 91.320250 1 3027 4 chr5A.!!$R1 3026
4 TraesCS2A01G460700 chr5B 230246475 230249195 2720 True 1090.666667 2418 90.535000 165 3027 3 chr5B.!!$R2 2862
5 TraesCS2A01G460700 chr5D 214917695 214920349 2654 True 1072.666667 2375 90.397000 165 3027 3 chr5D.!!$R1 2862
6 TraesCS2A01G460700 chr4B 135210867 135212041 1174 False 338.500000 521 83.432000 387 1607 2 chr4B.!!$F1 1220
7 TraesCS2A01G460700 chr4A 483950767 483951949 1182 True 326.500000 505 83.026500 392 1607 2 chr4A.!!$R3 1215
8 TraesCS2A01G460700 chr4D 95780563 95781514 951 False 328.500000 501 84.896000 387 1429 2 chr4D.!!$F1 1042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 796 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
717 799 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 2073 1.005037 CAGTAAGCTGGCACCGTGA 60.005 57.895 1.65 0.00 39.01 4.35 R
2689 3014 1.698165 CACGTACACTCGCTGATTGT 58.302 50.000 0.00 6.73 30.83 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 0.992695 AAAAGACCCCTACTGCCCTC 59.007 55.000 0.00 0.00 0.00 4.30
82 84 0.036010 CAGCTACCCCAAGTGGACAG 60.036 60.000 0.00 0.00 37.39 3.51
99 101 4.099573 TGGACAGCAGGTATAAGAACTAGC 59.900 45.833 0.00 0.00 0.00 3.42
100 102 4.291783 GACAGCAGGTATAAGAACTAGCG 58.708 47.826 0.00 0.00 0.00 4.26
101 103 3.068307 ACAGCAGGTATAAGAACTAGCGG 59.932 47.826 0.00 0.00 0.00 5.52
102 104 3.068307 CAGCAGGTATAAGAACTAGCGGT 59.932 47.826 0.00 0.00 0.00 5.68
103 105 4.277672 CAGCAGGTATAAGAACTAGCGGTA 59.722 45.833 0.00 0.00 0.00 4.02
104 106 4.519730 AGCAGGTATAAGAACTAGCGGTAG 59.480 45.833 19.71 19.71 0.00 3.18
116 118 5.961396 ACTAGCGGTAGTACCAATCTATG 57.039 43.478 24.97 11.70 37.76 2.23
117 119 5.628130 ACTAGCGGTAGTACCAATCTATGA 58.372 41.667 24.97 0.00 37.76 2.15
118 120 6.246919 ACTAGCGGTAGTACCAATCTATGAT 58.753 40.000 24.97 2.40 37.76 2.45
119 121 7.400439 ACTAGCGGTAGTACCAATCTATGATA 58.600 38.462 24.97 3.44 37.76 2.15
120 122 6.761099 AGCGGTAGTACCAATCTATGATAG 57.239 41.667 19.41 0.00 38.47 2.08
121 123 6.246919 AGCGGTAGTACCAATCTATGATAGT 58.753 40.000 19.41 0.00 38.47 2.12
124 126 7.536855 CGGTAGTACCAATCTATGATAGTTCC 58.463 42.308 19.41 0.00 38.47 3.62
125 127 7.362747 CGGTAGTACCAATCTATGATAGTTCCC 60.363 44.444 19.41 0.00 38.47 3.97
127 129 9.750783 GTAGTACCAATCTATGATAGTTCCCTA 57.249 37.037 0.00 0.00 0.00 3.53
128 130 8.887264 AGTACCAATCTATGATAGTTCCCTAG 57.113 38.462 0.00 0.00 0.00 3.02
129 131 7.896496 AGTACCAATCTATGATAGTTCCCTAGG 59.104 40.741 0.06 0.06 0.00 3.02
132 134 7.794683 ACCAATCTATGATAGTTCCCTAGGAAA 59.205 37.037 11.48 0.00 43.86 3.13
133 135 8.097662 CCAATCTATGATAGTTCCCTAGGAAAC 58.902 40.741 11.48 6.55 43.86 2.78
134 136 7.800300 ATCTATGATAGTTCCCTAGGAAACC 57.200 40.000 11.48 0.00 43.86 3.27
135 137 6.935036 TCTATGATAGTTCCCTAGGAAACCT 58.065 40.000 11.48 0.00 43.86 3.50
136 138 7.011382 TCTATGATAGTTCCCTAGGAAACCTC 58.989 42.308 11.48 7.22 43.86 3.85
138 140 2.735259 AGTTCCCTAGGAAACCTCCA 57.265 50.000 11.48 0.00 43.86 3.86
139 141 3.222394 AGTTCCCTAGGAAACCTCCAT 57.778 47.619 11.48 0.00 43.86 3.41
140 142 2.846827 AGTTCCCTAGGAAACCTCCATG 59.153 50.000 11.48 0.00 43.86 3.66
141 143 2.576648 GTTCCCTAGGAAACCTCCATGT 59.423 50.000 11.48 0.00 43.86 3.21
142 144 2.478292 TCCCTAGGAAACCTCCATGTC 58.522 52.381 11.48 0.00 45.24 3.06
143 145 2.045885 TCCCTAGGAAACCTCCATGTCT 59.954 50.000 11.48 0.00 45.24 3.41
144 146 3.273886 TCCCTAGGAAACCTCCATGTCTA 59.726 47.826 11.48 0.00 45.24 2.59
145 147 3.388350 CCCTAGGAAACCTCCATGTCTAC 59.612 52.174 11.48 0.00 45.24 2.59
146 148 4.030913 CCTAGGAAACCTCCATGTCTACA 58.969 47.826 1.05 0.00 45.24 2.74
147 149 3.983044 AGGAAACCTCCATGTCTACAC 57.017 47.619 0.00 0.00 45.24 2.90
148 150 3.248024 AGGAAACCTCCATGTCTACACA 58.752 45.455 0.00 0.00 45.24 3.72
149 151 3.846588 AGGAAACCTCCATGTCTACACAT 59.153 43.478 0.00 0.00 45.24 3.21
150 152 5.104941 TAGGAAACCTCCATGTCTACACATG 60.105 44.000 4.26 4.26 45.49 3.21
151 153 7.488992 TAGGAAACCTCCATGTCTACACATGT 61.489 42.308 9.84 0.00 45.02 3.21
152 154 8.895931 TAGGAAACCTCCATGTCTACACATGTT 61.896 40.741 9.84 0.00 45.02 2.71
161 163 6.757897 ATGTCTACACATGTTACAAATGGG 57.242 37.500 0.00 0.00 42.05 4.00
162 164 5.870706 TGTCTACACATGTTACAAATGGGA 58.129 37.500 0.00 0.00 32.53 4.37
163 165 6.480763 TGTCTACACATGTTACAAATGGGAT 58.519 36.000 0.00 0.00 32.53 3.85
164 166 6.374053 TGTCTACACATGTTACAAATGGGATG 59.626 38.462 0.00 0.00 32.53 3.51
165 167 5.885352 TCTACACATGTTACAAATGGGATGG 59.115 40.000 0.00 0.00 32.53 3.51
166 168 4.671831 ACACATGTTACAAATGGGATGGA 58.328 39.130 0.00 0.00 32.53 3.41
167 169 4.462483 ACACATGTTACAAATGGGATGGAC 59.538 41.667 0.00 0.00 32.53 4.02
168 170 4.462132 CACATGTTACAAATGGGATGGACA 59.538 41.667 0.00 0.00 29.35 4.02
169 171 4.462483 ACATGTTACAAATGGGATGGACAC 59.538 41.667 0.00 0.00 0.00 3.67
185 187 2.501723 GGACACCTCCATGTCTACACAT 59.498 50.000 5.92 0.00 46.85 3.21
218 220 7.219601 TGGGATGGACTCTTATTGGAAATTA 57.780 36.000 0.00 0.00 0.00 1.40
274 280 1.202580 CGTCCCAAGGCCAGATAGAAG 60.203 57.143 5.01 0.00 0.00 2.85
275 281 2.119495 GTCCCAAGGCCAGATAGAAGA 58.881 52.381 5.01 0.00 0.00 2.87
276 282 2.505819 GTCCCAAGGCCAGATAGAAGAA 59.494 50.000 5.01 0.00 0.00 2.52
331 341 1.884235 CAGAAACCTGGACCTGTGTC 58.116 55.000 0.00 0.00 40.98 3.67
332 342 1.417890 CAGAAACCTGGACCTGTGTCT 59.582 52.381 0.00 2.53 41.47 3.41
338 348 1.550179 CCTGGACCTGTGTCTGTAGGA 60.550 57.143 0.00 0.00 41.47 2.94
339 349 1.821753 CTGGACCTGTGTCTGTAGGAG 59.178 57.143 0.00 0.00 41.47 3.69
591 673 8.964476 TTTCACTTTGATTCTTCTTGTCTACT 57.036 30.769 0.00 0.00 0.00 2.57
593 675 9.477484 TTCACTTTGATTCTTCTTGTCTACTAC 57.523 33.333 0.00 0.00 0.00 2.73
594 676 8.861086 TCACTTTGATTCTTCTTGTCTACTACT 58.139 33.333 0.00 0.00 0.00 2.57
595 677 9.482627 CACTTTGATTCTTCTTGTCTACTACTT 57.517 33.333 0.00 0.00 0.00 2.24
596 678 9.699703 ACTTTGATTCTTCTTGTCTACTACTTC 57.300 33.333 0.00 0.00 0.00 3.01
597 679 9.145865 CTTTGATTCTTCTTGTCTACTACTTCC 57.854 37.037 0.00 0.00 0.00 3.46
598 680 8.423906 TTGATTCTTCTTGTCTACTACTTCCT 57.576 34.615 0.00 0.00 0.00 3.36
599 681 9.529823 TTGATTCTTCTTGTCTACTACTTCCTA 57.470 33.333 0.00 0.00 0.00 2.94
600 682 8.958506 TGATTCTTCTTGTCTACTACTTCCTAC 58.041 37.037 0.00 0.00 0.00 3.18
601 683 6.981762 TCTTCTTGTCTACTACTTCCTACG 57.018 41.667 0.00 0.00 0.00 3.51
602 684 6.471146 TCTTCTTGTCTACTACTTCCTACGT 58.529 40.000 0.00 0.00 0.00 3.57
603 685 6.593382 TCTTCTTGTCTACTACTTCCTACGTC 59.407 42.308 0.00 0.00 0.00 4.34
604 686 5.181748 TCTTGTCTACTACTTCCTACGTCC 58.818 45.833 0.00 0.00 0.00 4.79
605 687 3.525537 TGTCTACTACTTCCTACGTCCG 58.474 50.000 0.00 0.00 0.00 4.79
606 688 3.195610 TGTCTACTACTTCCTACGTCCGA 59.804 47.826 0.00 0.00 0.00 4.55
607 689 4.184629 GTCTACTACTTCCTACGTCCGAA 58.815 47.826 0.00 0.00 0.00 4.30
608 690 4.631813 GTCTACTACTTCCTACGTCCGAAA 59.368 45.833 0.00 0.00 0.00 3.46
609 691 5.122396 GTCTACTACTTCCTACGTCCGAAAA 59.878 44.000 0.00 0.00 0.00 2.29
610 692 5.882557 TCTACTACTTCCTACGTCCGAAAAT 59.117 40.000 0.00 0.00 0.00 1.82
611 693 7.011482 GTCTACTACTTCCTACGTCCGAAAATA 59.989 40.741 0.00 0.00 0.00 1.40
612 694 5.884771 ACTACTTCCTACGTCCGAAAATAC 58.115 41.667 0.00 0.00 0.00 1.89
613 695 5.649831 ACTACTTCCTACGTCCGAAAATACT 59.350 40.000 0.00 0.00 0.00 2.12
614 696 5.397142 ACTTCCTACGTCCGAAAATACTT 57.603 39.130 0.00 0.00 0.00 2.24
615 697 5.166398 ACTTCCTACGTCCGAAAATACTTG 58.834 41.667 0.00 0.00 0.00 3.16
616 698 4.789012 TCCTACGTCCGAAAATACTTGT 57.211 40.909 0.00 0.00 0.00 3.16
617 699 4.737054 TCCTACGTCCGAAAATACTTGTC 58.263 43.478 0.00 0.00 0.00 3.18
618 700 4.218200 TCCTACGTCCGAAAATACTTGTCA 59.782 41.667 0.00 0.00 0.00 3.58
619 701 5.105635 TCCTACGTCCGAAAATACTTGTCAT 60.106 40.000 0.00 0.00 0.00 3.06
620 702 5.231568 CCTACGTCCGAAAATACTTGTCATC 59.768 44.000 0.00 0.00 0.00 2.92
621 703 4.562082 ACGTCCGAAAATACTTGTCATCA 58.438 39.130 0.00 0.00 0.00 3.07
622 704 4.992319 ACGTCCGAAAATACTTGTCATCAA 59.008 37.500 0.00 0.00 0.00 2.57
623 705 5.467399 ACGTCCGAAAATACTTGTCATCAAA 59.533 36.000 0.00 0.00 32.87 2.69
624 706 6.017770 ACGTCCGAAAATACTTGTCATCAAAA 60.018 34.615 0.00 0.00 32.87 2.44
625 707 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
626 708 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
627 709 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
628 710 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
629 711 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
636 718 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
637 719 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
638 720 5.424895 TGTCATCAAAATGGATAAAAGGGGG 59.575 40.000 0.00 0.00 33.42 5.40
639 721 5.425217 GTCATCAAAATGGATAAAAGGGGGT 59.575 40.000 0.00 0.00 33.42 4.95
640 722 5.424895 TCATCAAAATGGATAAAAGGGGGTG 59.575 40.000 0.00 0.00 33.42 4.61
641 723 4.757692 TCAAAATGGATAAAAGGGGGTGT 58.242 39.130 0.00 0.00 0.00 4.16
642 724 5.905088 TCAAAATGGATAAAAGGGGGTGTA 58.095 37.500 0.00 0.00 0.00 2.90
643 725 6.507568 TCAAAATGGATAAAAGGGGGTGTAT 58.492 36.000 0.00 0.00 0.00 2.29
644 726 6.609616 TCAAAATGGATAAAAGGGGGTGTATC 59.390 38.462 0.00 0.00 0.00 2.24
645 727 6.355588 AAATGGATAAAAGGGGGTGTATCT 57.644 37.500 0.00 0.00 0.00 1.98
646 728 7.474474 AAATGGATAAAAGGGGGTGTATCTA 57.526 36.000 0.00 0.00 0.00 1.98
647 729 6.704056 ATGGATAAAAGGGGGTGTATCTAG 57.296 41.667 0.00 0.00 0.00 2.43
648 730 5.795079 TGGATAAAAGGGGGTGTATCTAGA 58.205 41.667 0.00 0.00 0.00 2.43
649 731 6.214278 TGGATAAAAGGGGGTGTATCTAGAA 58.786 40.000 0.00 0.00 0.00 2.10
650 732 6.100714 TGGATAAAAGGGGGTGTATCTAGAAC 59.899 42.308 0.00 0.00 0.00 3.01
651 733 6.329460 GGATAAAAGGGGGTGTATCTAGAACT 59.671 42.308 0.00 0.00 0.00 3.01
652 734 7.511714 GGATAAAAGGGGGTGTATCTAGAACTA 59.488 40.741 0.00 0.00 0.00 2.24
653 735 8.865244 ATAAAAGGGGGTGTATCTAGAACTAA 57.135 34.615 0.00 0.00 0.00 2.24
654 736 7.578458 AAAAGGGGGTGTATCTAGAACTAAA 57.422 36.000 0.00 0.00 0.00 1.85
655 737 7.578458 AAAGGGGGTGTATCTAGAACTAAAA 57.422 36.000 0.00 0.00 0.00 1.52
656 738 7.766736 AAGGGGGTGTATCTAGAACTAAAAT 57.233 36.000 0.00 0.00 0.00 1.82
657 739 8.865244 AAGGGGGTGTATCTAGAACTAAAATA 57.135 34.615 0.00 0.00 0.00 1.40
658 740 8.260099 AGGGGGTGTATCTAGAACTAAAATAC 57.740 38.462 0.00 0.00 0.00 1.89
659 741 7.847848 AGGGGGTGTATCTAGAACTAAAATACA 59.152 37.037 0.00 0.00 32.07 2.29
660 742 8.657712 GGGGGTGTATCTAGAACTAAAATACAT 58.342 37.037 0.00 0.00 35.81 2.29
661 743 9.708092 GGGGTGTATCTAGAACTAAAATACATC 57.292 37.037 0.00 13.73 35.81 3.06
697 779 9.865321 CATCTTTTATCCATTTTGATGACAAGT 57.135 29.630 0.00 0.00 37.32 3.16
704 786 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
705 787 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
706 788 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
707 789 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
708 790 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
709 791 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
710 792 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
711 793 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
712 794 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
713 795 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
714 796 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
715 797 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
716 798 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
717 799 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
718 800 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
721 803 2.482333 CGGACGGAGGGAGTAGCTG 61.482 68.421 0.00 0.00 0.00 4.24
777 859 2.038837 GCACCAAGTCGGCCTTACC 61.039 63.158 0.00 0.00 39.03 2.85
780 881 1.485066 CACCAAGTCGGCCTTACCTAT 59.515 52.381 0.00 0.00 39.03 2.57
920 1032 2.877154 TCCTATTCCTGCCTCTCCTT 57.123 50.000 0.00 0.00 0.00 3.36
948 1075 0.979665 TCTTCTCTCCACTGCCCAAG 59.020 55.000 0.00 0.00 0.00 3.61
962 1089 1.892474 GCCCAAGTTTTGCCATAGACA 59.108 47.619 0.00 0.00 0.00 3.41
963 1090 2.298729 GCCCAAGTTTTGCCATAGACAA 59.701 45.455 0.00 0.00 0.00 3.18
964 1091 3.614870 GCCCAAGTTTTGCCATAGACAAG 60.615 47.826 0.00 0.00 0.00 3.16
965 1092 3.826157 CCCAAGTTTTGCCATAGACAAGA 59.174 43.478 0.00 0.00 0.00 3.02
1013 1156 2.284039 AGCAATGGCCATGCACCA 60.284 55.556 29.62 8.02 46.22 4.17
1249 1395 0.537188 GTCTTTCGAGGATGAGGCCA 59.463 55.000 5.01 0.00 0.00 5.36
1411 1557 0.681564 AGGCGACCGTCTCTTCATCT 60.682 55.000 0.00 0.00 0.00 2.90
1459 1626 2.577059 CACCACCAGTCCGCGTAT 59.423 61.111 4.92 0.00 0.00 3.06
1638 1823 5.106396 CCCTCAAGAACAAAGCACTTGATAG 60.106 44.000 0.00 0.00 45.34 2.08
1844 2037 1.906994 GCAGCAACGCCAATGTACGA 61.907 55.000 0.00 0.00 0.00 3.43
1877 2073 3.706373 CCCCTACGCTGCAGTGGT 61.706 66.667 29.60 21.92 0.00 4.16
1888 2084 2.666190 CAGTGGTCACGGTGCCAG 60.666 66.667 19.82 9.40 35.14 4.85
1936 2132 5.754406 TCACCAAAAGTTCAATTGCATTCAG 59.246 36.000 0.00 0.00 0.00 3.02
1960 2157 7.807433 CAGACACATCTGTAGATATTCAGTAGC 59.193 40.741 0.00 0.00 46.39 3.58
2098 2301 4.942363 ACTAGTTACTACTCCCACCAGA 57.058 45.455 0.00 0.00 35.78 3.86
2616 2848 5.772521 AGTCAAACAATGCATTCACCTTAC 58.227 37.500 9.53 4.28 0.00 2.34
2653 2919 6.757897 TCAATGCATTTACCTTACCTTCTG 57.242 37.500 9.83 0.00 0.00 3.02
2654 2920 6.480763 TCAATGCATTTACCTTACCTTCTGA 58.519 36.000 9.83 0.00 0.00 3.27
2655 2921 6.945435 TCAATGCATTTACCTTACCTTCTGAA 59.055 34.615 9.83 0.00 0.00 3.02
2689 3014 9.625747 TCAATGCATTCATACACCTAAGATAAA 57.374 29.630 9.53 0.00 31.46 1.40
2710 3035 1.071019 AATCAGCGAGTGTACGTGCG 61.071 55.000 0.00 0.00 35.59 5.34
2728 3071 1.531264 GCGATGCAATGCAGTTCTCAG 60.531 52.381 14.98 4.38 43.65 3.35
2749 3092 7.891183 TCTCAGAGTCTCTAAACAATAGGAAGT 59.109 37.037 0.94 0.00 0.00 3.01
2885 3229 3.149005 AGCCGGTATCAACCTTTTTGA 57.851 42.857 1.90 0.00 44.35 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 3.758554 AGCTGGTAGGCAATAACTTGTTG 59.241 43.478 0.00 0.00 34.69 3.33
82 84 3.729862 ACCGCTAGTTCTTATACCTGC 57.270 47.619 0.00 0.00 0.00 4.85
99 101 7.362747 GGGAACTATCATAGATTGGTACTACCG 60.363 44.444 0.00 0.00 42.58 4.02
100 102 7.674772 AGGGAACTATCATAGATTGGTACTACC 59.325 40.741 0.00 0.00 40.61 3.18
101 103 8.653036 AGGGAACTATCATAGATTGGTACTAC 57.347 38.462 0.00 0.00 40.61 2.73
102 104 9.976776 CTAGGGAACTATCATAGATTGGTACTA 57.023 37.037 0.00 0.00 43.39 1.82
103 105 7.896496 CCTAGGGAACTATCATAGATTGGTACT 59.104 40.741 0.00 0.00 43.39 2.73
104 106 7.894364 TCCTAGGGAACTATCATAGATTGGTAC 59.106 40.741 9.46 0.00 43.39 3.34
116 118 4.296056 TGGAGGTTTCCTAGGGAACTATC 58.704 47.826 28.53 24.57 41.87 2.08
117 119 4.363546 TGGAGGTTTCCTAGGGAACTAT 57.636 45.455 28.53 19.12 41.87 2.12
118 120 3.858696 TGGAGGTTTCCTAGGGAACTA 57.141 47.619 28.53 12.72 41.87 2.24
119 121 2.735259 TGGAGGTTTCCTAGGGAACT 57.265 50.000 28.53 16.69 41.87 3.01
120 122 2.576648 ACATGGAGGTTTCCTAGGGAAC 59.423 50.000 23.19 23.19 41.87 3.62
121 123 2.844348 GACATGGAGGTTTCCTAGGGAA 59.156 50.000 9.46 2.79 44.36 3.97
124 126 4.030913 TGTAGACATGGAGGTTTCCTAGG 58.969 47.826 0.82 0.82 44.36 3.02
125 127 4.466370 TGTGTAGACATGGAGGTTTCCTAG 59.534 45.833 0.00 0.00 44.36 3.02
127 129 3.248024 TGTGTAGACATGGAGGTTTCCT 58.752 45.455 0.00 0.00 44.36 3.36
128 130 3.695830 TGTGTAGACATGGAGGTTTCC 57.304 47.619 0.00 0.00 44.31 3.13
138 140 6.480763 TCCCATTTGTAACATGTGTAGACAT 58.519 36.000 0.00 0.00 44.08 3.06
139 141 5.870706 TCCCATTTGTAACATGTGTAGACA 58.129 37.500 0.00 0.00 36.22 3.41
140 142 6.183360 CCATCCCATTTGTAACATGTGTAGAC 60.183 42.308 0.00 0.00 0.00 2.59
141 143 5.885352 CCATCCCATTTGTAACATGTGTAGA 59.115 40.000 0.00 0.00 0.00 2.59
142 144 5.885352 TCCATCCCATTTGTAACATGTGTAG 59.115 40.000 0.00 0.00 0.00 2.74
143 145 5.650266 GTCCATCCCATTTGTAACATGTGTA 59.350 40.000 0.00 0.00 0.00 2.90
144 146 4.462483 GTCCATCCCATTTGTAACATGTGT 59.538 41.667 0.00 0.00 0.00 3.72
145 147 4.462132 TGTCCATCCCATTTGTAACATGTG 59.538 41.667 0.00 0.00 0.00 3.21
146 148 4.462483 GTGTCCATCCCATTTGTAACATGT 59.538 41.667 0.00 0.00 0.00 3.21
147 149 4.142182 GGTGTCCATCCCATTTGTAACATG 60.142 45.833 0.00 0.00 0.00 3.21
148 150 4.023291 GGTGTCCATCCCATTTGTAACAT 58.977 43.478 0.00 0.00 0.00 2.71
149 151 3.075283 AGGTGTCCATCCCATTTGTAACA 59.925 43.478 0.00 0.00 0.00 2.41
150 152 3.694566 GAGGTGTCCATCCCATTTGTAAC 59.305 47.826 0.00 0.00 0.00 2.50
151 153 3.308832 GGAGGTGTCCATCCCATTTGTAA 60.309 47.826 0.00 0.00 43.31 2.41
152 154 2.241176 GGAGGTGTCCATCCCATTTGTA 59.759 50.000 0.00 0.00 43.31 2.41
153 155 1.005924 GGAGGTGTCCATCCCATTTGT 59.994 52.381 0.00 0.00 43.31 2.83
154 156 1.767759 GGAGGTGTCCATCCCATTTG 58.232 55.000 0.00 0.00 43.31 2.32
165 167 3.895232 ATGTGTAGACATGGAGGTGTC 57.105 47.619 4.42 0.00 46.90 3.67
185 187 4.927267 AGAGTCCATCCCATTTGTAACA 57.073 40.909 0.00 0.00 0.00 2.41
218 220 3.252458 GTGGCTGGTTTATTCAGAAACGT 59.748 43.478 0.00 0.00 39.72 3.99
327 337 5.801380 TCATTTTAACCCTCCTACAGACAC 58.199 41.667 0.00 0.00 0.00 3.67
331 341 5.189934 ACTCCTCATTTTAACCCTCCTACAG 59.810 44.000 0.00 0.00 0.00 2.74
332 342 5.098663 ACTCCTCATTTTAACCCTCCTACA 58.901 41.667 0.00 0.00 0.00 2.74
338 348 6.045106 TGTCCTTAACTCCTCATTTTAACCCT 59.955 38.462 0.00 0.00 0.00 4.34
339 349 6.243148 TGTCCTTAACTCCTCATTTTAACCC 58.757 40.000 0.00 0.00 0.00 4.11
560 642 4.522022 AGAAGAATCAAAGTGAAAGGGCTG 59.478 41.667 0.00 0.00 0.00 4.85
591 673 6.071952 ACAAGTATTTTCGGACGTAGGAAGTA 60.072 38.462 0.00 0.00 0.00 2.24
592 674 5.166398 CAAGTATTTTCGGACGTAGGAAGT 58.834 41.667 0.00 0.00 0.00 3.01
593 675 5.166398 ACAAGTATTTTCGGACGTAGGAAG 58.834 41.667 0.00 0.00 0.00 3.46
594 676 5.138125 ACAAGTATTTTCGGACGTAGGAA 57.862 39.130 0.00 0.00 0.00 3.36
595 677 4.218200 TGACAAGTATTTTCGGACGTAGGA 59.782 41.667 0.00 0.00 0.00 2.94
596 678 4.487948 TGACAAGTATTTTCGGACGTAGG 58.512 43.478 0.00 0.00 0.00 3.18
597 679 5.803461 TGATGACAAGTATTTTCGGACGTAG 59.197 40.000 0.00 0.00 0.00 3.51
598 680 5.712004 TGATGACAAGTATTTTCGGACGTA 58.288 37.500 0.00 0.00 0.00 3.57
599 681 4.562082 TGATGACAAGTATTTTCGGACGT 58.438 39.130 0.00 0.00 0.00 4.34
600 682 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
601 683 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
602 684 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
603 685 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
604 686 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
610 692 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
611 693 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
612 694 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
613 695 6.070309 CCCCCTTTTATCCATTTTGATGACAA 60.070 38.462 0.00 0.00 0.00 3.18
614 696 5.424895 CCCCCTTTTATCCATTTTGATGACA 59.575 40.000 0.00 0.00 0.00 3.58
615 697 5.425217 ACCCCCTTTTATCCATTTTGATGAC 59.575 40.000 0.00 0.00 0.00 3.06
616 698 5.424895 CACCCCCTTTTATCCATTTTGATGA 59.575 40.000 0.00 0.00 0.00 2.92
617 699 5.189539 ACACCCCCTTTTATCCATTTTGATG 59.810 40.000 0.00 0.00 0.00 3.07
618 700 5.349690 ACACCCCCTTTTATCCATTTTGAT 58.650 37.500 0.00 0.00 0.00 2.57
619 701 4.757692 ACACCCCCTTTTATCCATTTTGA 58.242 39.130 0.00 0.00 0.00 2.69
620 702 6.611236 AGATACACCCCCTTTTATCCATTTTG 59.389 38.462 0.00 0.00 0.00 2.44
621 703 6.752091 AGATACACCCCCTTTTATCCATTTT 58.248 36.000 0.00 0.00 0.00 1.82
622 704 6.355588 AGATACACCCCCTTTTATCCATTT 57.644 37.500 0.00 0.00 0.00 2.32
623 705 6.855061 TCTAGATACACCCCCTTTTATCCATT 59.145 38.462 0.00 0.00 0.00 3.16
624 706 6.399013 TCTAGATACACCCCCTTTTATCCAT 58.601 40.000 0.00 0.00 0.00 3.41
625 707 5.795079 TCTAGATACACCCCCTTTTATCCA 58.205 41.667 0.00 0.00 0.00 3.41
626 708 6.329460 AGTTCTAGATACACCCCCTTTTATCC 59.671 42.308 0.00 0.00 0.00 2.59
627 709 7.376335 AGTTCTAGATACACCCCCTTTTATC 57.624 40.000 0.00 0.00 0.00 1.75
628 710 8.865244 TTAGTTCTAGATACACCCCCTTTTAT 57.135 34.615 0.00 0.00 0.00 1.40
629 711 8.683776 TTTAGTTCTAGATACACCCCCTTTTA 57.316 34.615 0.00 0.00 0.00 1.52
630 712 7.578458 TTTAGTTCTAGATACACCCCCTTTT 57.422 36.000 0.00 0.00 0.00 2.27
631 713 7.578458 TTTTAGTTCTAGATACACCCCCTTT 57.422 36.000 0.00 0.00 0.00 3.11
632 714 7.766736 ATTTTAGTTCTAGATACACCCCCTT 57.233 36.000 0.00 0.00 0.00 3.95
633 715 7.847848 TGTATTTTAGTTCTAGATACACCCCCT 59.152 37.037 0.00 0.00 30.60 4.79
634 716 8.026396 TGTATTTTAGTTCTAGATACACCCCC 57.974 38.462 0.00 0.00 30.60 5.40
635 717 9.708092 GATGTATTTTAGTTCTAGATACACCCC 57.292 37.037 14.34 8.08 36.40 4.95
671 753 9.865321 ACTTGTCATCAAAATGGATAAAAGATG 57.135 29.630 0.00 0.00 33.42 2.90
678 760 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
679 761 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
680 762 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
681 763 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
682 764 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
683 765 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
684 766 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
685 767 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
686 768 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
687 769 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
688 770 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
689 771 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
690 772 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
691 773 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
692 774 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
693 775 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
694 776 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
695 777 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
696 778 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
697 779 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
698 780 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
699 781 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
700 782 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
701 783 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
702 784 3.217743 GCTACTCCCTCCGTCCGG 61.218 72.222 0.00 0.00 0.00 5.14
703 785 2.124236 AGCTACTCCCTCCGTCCG 60.124 66.667 0.00 0.00 0.00 4.79
704 786 2.128507 CCAGCTACTCCCTCCGTCC 61.129 68.421 0.00 0.00 0.00 4.79
705 787 2.128507 CCCAGCTACTCCCTCCGTC 61.129 68.421 0.00 0.00 0.00 4.79
706 788 2.042843 CCCAGCTACTCCCTCCGT 60.043 66.667 0.00 0.00 0.00 4.69
707 789 0.396695 TAACCCAGCTACTCCCTCCG 60.397 60.000 0.00 0.00 0.00 4.63
708 790 1.875488 TTAACCCAGCTACTCCCTCC 58.125 55.000 0.00 0.00 0.00 4.30
709 791 3.994931 TTTTAACCCAGCTACTCCCTC 57.005 47.619 0.00 0.00 0.00 4.30
710 792 5.037598 AGTATTTTAACCCAGCTACTCCCT 58.962 41.667 0.00 0.00 0.00 4.20
711 793 5.123936 CAGTATTTTAACCCAGCTACTCCC 58.876 45.833 0.00 0.00 0.00 4.30
712 794 5.123936 CCAGTATTTTAACCCAGCTACTCC 58.876 45.833 0.00 0.00 0.00 3.85
713 795 5.742063 ACCAGTATTTTAACCCAGCTACTC 58.258 41.667 0.00 0.00 0.00 2.59
714 796 5.774102 ACCAGTATTTTAACCCAGCTACT 57.226 39.130 0.00 0.00 0.00 2.57
715 797 6.647229 AGTACCAGTATTTTAACCCAGCTAC 58.353 40.000 0.00 0.00 0.00 3.58
716 798 6.879367 AGTACCAGTATTTTAACCCAGCTA 57.121 37.500 0.00 0.00 0.00 3.32
717 799 5.774102 AGTACCAGTATTTTAACCCAGCT 57.226 39.130 0.00 0.00 0.00 4.24
718 800 5.819379 GGTAGTACCAGTATTTTAACCCAGC 59.181 44.000 14.82 0.00 38.42 4.85
721 803 6.070021 AGTGGGTAGTACCAGTATTTTAACCC 60.070 42.308 20.97 1.77 42.30 4.11
920 1032 4.021544 GCAGTGGAGAGAAGAGAAGAGAAA 60.022 45.833 0.00 0.00 0.00 2.52
948 1075 5.920840 GGTTCTTTCTTGTCTATGGCAAAAC 59.079 40.000 0.00 0.00 0.00 2.43
1013 1156 2.367512 GGTGCCCCTGGGAGAGAT 60.368 66.667 16.20 0.00 37.50 2.75
1459 1626 2.973899 GTTCAGAGCAGGCGGAGA 59.026 61.111 0.00 0.00 0.00 3.71
1638 1823 4.923893 TGCATCTAAGTTATGTTGCATGC 58.076 39.130 11.82 11.82 35.01 4.06
1788 1981 2.143594 GACCGCAGTCGAGGTTGACT 62.144 60.000 0.00 0.00 46.56 3.41
1844 2037 1.918800 GGGCTCTGGTGGGTGTAGT 60.919 63.158 0.00 0.00 0.00 2.73
1877 2073 1.005037 CAGTAAGCTGGCACCGTGA 60.005 57.895 1.65 0.00 39.01 4.35
1888 2084 5.535333 TGTTTACAGTACTGACCAGTAAGC 58.465 41.667 29.30 17.27 44.62 3.09
1898 2094 7.259290 ACTTTTGGTGATGTTTACAGTACTG 57.741 36.000 21.44 21.44 0.00 2.74
1936 2132 7.593273 GTGCTACTGAATATCTACAGATGTGTC 59.407 40.741 0.00 0.00 38.19 3.67
2006 2208 2.489938 TATGAACTGGCCCTGTTGTC 57.510 50.000 11.06 0.00 0.00 3.18
2016 2218 4.163078 AGACCTCACCATCTTATGAACTGG 59.837 45.833 0.00 0.00 34.84 4.00
2227 2444 6.936900 TGGAAGACCAGAAGAAAGAAACATAG 59.063 38.462 0.00 0.00 41.77 2.23
2229 2446 5.694995 TGGAAGACCAGAAGAAAGAAACAT 58.305 37.500 0.00 0.00 41.77 2.71
2230 2447 5.110814 TGGAAGACCAGAAGAAAGAAACA 57.889 39.130 0.00 0.00 41.77 2.83
2689 3014 1.698165 CACGTACACTCGCTGATTGT 58.302 50.000 0.00 6.73 30.83 2.71
2710 3035 3.008330 ACTCTGAGAACTGCATTGCATC 58.992 45.455 12.53 7.96 38.13 3.91
2728 3071 9.356433 GTTACACTTCCTATTGTTTAGAGACTC 57.644 37.037 0.00 0.00 0.00 3.36
2749 3092 4.393680 GTCAATCTTGGCCATAACGTTACA 59.606 41.667 6.09 0.89 0.00 2.41
2885 3229 1.636769 GCCTTTCCTTCCCGAGGGAT 61.637 60.000 12.27 0.00 46.31 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.