Multiple sequence alignment - TraesCS2A01G460200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G460200 chr2A 100.000 3551 0 0 1 3551 706762420 706765970 0.000000e+00 6558.0
1 TraesCS2A01G460200 chr2A 94.737 57 2 1 264 320 416922990 416922935 1.760000e-13 87.9
2 TraesCS2A01G460200 chr2A 94.545 55 2 1 264 318 28824183 28824236 2.270000e-12 84.2
3 TraesCS2A01G460200 chr2A 83.333 72 11 1 198 268 622260832 622260761 8.230000e-07 65.8
4 TraesCS2A01G460200 chr2B 94.839 2170 92 12 962 3123 679909358 679911515 0.000000e+00 3369.0
5 TraesCS2A01G460200 chr2B 90.139 649 45 13 265 909 679908359 679908992 0.000000e+00 826.0
6 TraesCS2A01G460200 chr2B 77.632 152 15 11 123 255 594084585 594084434 1.370000e-09 75.0
7 TraesCS2A01G460200 chr2D 94.248 2173 71 23 965 3123 566998230 567000362 0.000000e+00 3271.0
8 TraesCS2A01G460200 chr2D 92.508 654 27 11 264 903 566997582 566998227 0.000000e+00 917.0
9 TraesCS2A01G460200 chr2D 85.859 297 40 2 3141 3436 567000345 567000640 7.400000e-82 315.0
10 TraesCS2A01G460200 chr2D 87.324 71 8 1 198 267 53196151 53196081 2.940000e-11 80.5
11 TraesCS2A01G460200 chr2D 91.837 49 3 1 222 269 78567603 78567555 2.290000e-07 67.6
12 TraesCS2A01G460200 chr5D 82.581 620 83 15 1376 1995 15329772 15329178 1.130000e-144 523.0
13 TraesCS2A01G460200 chr5B 86.813 182 23 1 2171 2352 322749212 322749032 6.010000e-48 202.0
14 TraesCS2A01G460200 chr5B 96.078 51 1 1 268 318 247252783 247252832 8.170000e-12 82.4
15 TraesCS2A01G460200 chr5B 84.337 83 11 2 3362 3443 637111641 637111722 2.940000e-11 80.5
16 TraesCS2A01G460200 chr3A 92.771 83 5 1 118 200 291805481 291805562 6.230000e-23 119.0
17 TraesCS2A01G460200 chr3A 86.420 81 9 2 3362 3441 31590085 31590164 1.760000e-13 87.9
18 TraesCS2A01G460200 chr5A 91.463 82 7 0 119 200 154620101 154620182 2.900000e-21 113.0
19 TraesCS2A01G460200 chr5A 89.873 79 8 0 122 200 152481081 152481003 6.270000e-18 102.0
20 TraesCS2A01G460200 chr5A 94.340 53 2 1 264 316 370244640 370244589 2.940000e-11 80.5
21 TraesCS2A01G460200 chr5A 84.722 72 10 1 198 268 361906731 361906660 1.770000e-08 71.3
22 TraesCS2A01G460200 chr6B 93.243 74 5 0 123 196 456208407 456208334 3.750000e-20 110.0
23 TraesCS2A01G460200 chr6B 91.892 74 6 0 123 196 15232512 15232439 1.740000e-18 104.0
24 TraesCS2A01G460200 chr6B 91.071 56 4 1 213 267 709201385 709201440 1.370000e-09 75.0
25 TraesCS2A01G460200 chr3D 90.361 83 7 1 118 200 217587858 217587777 1.350000e-19 108.0
26 TraesCS2A01G460200 chr3D 81.022 137 18 7 3308 3440 21886503 21886635 6.270000e-18 102.0
27 TraesCS2A01G460200 chr3D 92.857 56 3 1 198 252 466297160 466297215 2.940000e-11 80.5
28 TraesCS2A01G460200 chr6A 91.026 78 7 0 123 200 156745999 156746076 4.850000e-19 106.0
29 TraesCS2A01G460200 chr6A 94.643 56 2 1 264 319 115319480 115319534 6.320000e-13 86.1
30 TraesCS2A01G460200 chr1B 89.873 79 8 0 122 200 669777601 669777523 6.270000e-18 102.0
31 TraesCS2A01G460200 chr1B 93.333 60 3 1 261 320 610173790 610173848 1.760000e-13 87.9
32 TraesCS2A01G460200 chr1D 89.744 78 8 0 123 200 43121784 43121707 2.260000e-17 100.0
33 TraesCS2A01G460200 chr1D 81.818 88 16 0 3356 3443 219476112 219476199 1.370000e-09 75.0
34 TraesCS2A01G460200 chr1A 94.737 57 2 1 264 320 542002617 542002672 1.760000e-13 87.9
35 TraesCS2A01G460200 chr7B 88.406 69 6 2 3374 3441 200718425 200718492 8.170000e-12 82.4
36 TraesCS2A01G460200 chr7B 90.164 61 6 0 3383 3443 716927356 716927416 2.940000e-11 80.5
37 TraesCS2A01G460200 chr4D 92.727 55 3 1 264 318 208558608 208558555 1.060000e-10 78.7
38 TraesCS2A01G460200 chr4D 86.111 72 8 2 3372 3443 507023422 507023353 3.800000e-10 76.8
39 TraesCS2A01G460200 chr7D 87.500 64 6 2 203 265 593733383 593733445 4.920000e-09 73.1
40 TraesCS2A01G460200 chr7D 83.333 72 11 1 198 268 91854849 91854778 8.230000e-07 65.8
41 TraesCS2A01G460200 chr3B 76.087 138 29 4 3306 3441 9580358 9580493 6.360000e-08 69.4
42 TraesCS2A01G460200 chr3B 96.875 32 0 1 3384 3414 561854593 561854624 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G460200 chr2A 706762420 706765970 3550 False 6558.0 6558 100.000000 1 3551 1 chr2A.!!$F2 3550
1 TraesCS2A01G460200 chr2B 679908359 679911515 3156 False 2097.5 3369 92.489000 265 3123 2 chr2B.!!$F1 2858
2 TraesCS2A01G460200 chr2D 566997582 567000640 3058 False 1501.0 3271 90.871667 264 3436 3 chr2D.!!$F1 3172
3 TraesCS2A01G460200 chr5D 15329178 15329772 594 True 523.0 523 82.581000 1376 1995 1 chr5D.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 939 0.105607 CCCCCTCCCTCTGGTAGTAC 60.106 65.0 0.0 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2567 2908 0.316524 GACGTACGTCGGTATCCAGC 60.317 60.0 30.48 6.65 44.69 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.517602 TGATCCAACGGTGAGTAAATCG 58.482 45.455 0.00 0.00 0.00 3.34
23 24 3.193903 TGATCCAACGGTGAGTAAATCGA 59.806 43.478 0.00 0.00 0.00 3.59
24 25 2.950433 TCCAACGGTGAGTAAATCGAC 58.050 47.619 0.00 0.00 0.00 4.20
25 26 1.997606 CCAACGGTGAGTAAATCGACC 59.002 52.381 0.00 0.00 0.00 4.79
27 28 1.167851 ACGGTGAGTAAATCGACCGA 58.832 50.000 15.81 0.00 46.59 4.69
28 29 1.131883 ACGGTGAGTAAATCGACCGAG 59.868 52.381 15.81 0.00 46.59 4.63
29 30 1.399440 CGGTGAGTAAATCGACCGAGA 59.601 52.381 0.00 0.00 46.59 4.04
30 31 2.539142 CGGTGAGTAAATCGACCGAGAG 60.539 54.545 0.00 0.00 46.59 3.20
31 32 2.681848 GGTGAGTAAATCGACCGAGAGA 59.318 50.000 0.00 0.00 0.00 3.10
32 33 3.315749 GGTGAGTAAATCGACCGAGAGAT 59.684 47.826 0.00 0.00 0.00 2.75
33 34 4.514441 GGTGAGTAAATCGACCGAGAGATA 59.486 45.833 0.00 0.00 0.00 1.98
34 35 5.181622 GGTGAGTAAATCGACCGAGAGATAT 59.818 44.000 0.00 0.00 0.00 1.63
35 36 6.294065 GGTGAGTAAATCGACCGAGAGATATT 60.294 42.308 0.00 0.00 0.00 1.28
36 37 6.579292 GTGAGTAAATCGACCGAGAGATATTG 59.421 42.308 0.00 0.00 0.00 1.90
37 38 6.485648 TGAGTAAATCGACCGAGAGATATTGA 59.514 38.462 0.00 0.00 0.00 2.57
38 39 7.012989 TGAGTAAATCGACCGAGAGATATTGAA 59.987 37.037 0.00 0.00 0.00 2.69
39 40 7.887381 AGTAAATCGACCGAGAGATATTGAAT 58.113 34.615 0.00 0.00 0.00 2.57
40 41 8.361139 AGTAAATCGACCGAGAGATATTGAATT 58.639 33.333 0.00 0.00 0.00 2.17
41 42 7.644986 AAATCGACCGAGAGATATTGAATTC 57.355 36.000 0.00 0.00 0.00 2.17
42 43 6.582677 ATCGACCGAGAGATATTGAATTCT 57.417 37.500 7.05 0.00 0.00 2.40
43 44 6.392625 TCGACCGAGAGATATTGAATTCTT 57.607 37.500 7.05 0.00 0.00 2.52
44 45 6.209361 TCGACCGAGAGATATTGAATTCTTG 58.791 40.000 7.05 0.00 0.00 3.02
45 46 5.403766 CGACCGAGAGATATTGAATTCTTGG 59.596 44.000 7.05 9.20 43.81 3.61
46 47 5.615289 ACCGAGAGATATTGAATTCTTGGG 58.385 41.667 13.55 5.99 42.93 4.12
47 48 4.453819 CCGAGAGATATTGAATTCTTGGGC 59.546 45.833 7.05 0.00 37.51 5.36
48 49 5.059161 CGAGAGATATTGAATTCTTGGGCA 58.941 41.667 7.05 0.00 0.00 5.36
49 50 5.528690 CGAGAGATATTGAATTCTTGGGCAA 59.471 40.000 7.05 0.00 0.00 4.52
50 51 6.206243 CGAGAGATATTGAATTCTTGGGCAAT 59.794 38.462 7.05 0.28 35.38 3.56
51 52 7.255381 CGAGAGATATTGAATTCTTGGGCAATT 60.255 37.037 7.05 0.00 33.45 2.32
52 53 7.723324 AGAGATATTGAATTCTTGGGCAATTG 58.277 34.615 7.05 0.00 33.45 2.32
53 54 7.343833 AGAGATATTGAATTCTTGGGCAATTGT 59.656 33.333 7.40 0.00 33.45 2.71
54 55 8.537728 AGATATTGAATTCTTGGGCAATTGTA 57.462 30.769 7.40 0.00 33.45 2.41
55 56 8.980596 AGATATTGAATTCTTGGGCAATTGTAA 58.019 29.630 7.40 0.00 33.45 2.41
56 57 9.598517 GATATTGAATTCTTGGGCAATTGTAAA 57.401 29.630 7.40 0.00 33.45 2.01
58 59 8.866970 ATTGAATTCTTGGGCAATTGTAAATT 57.133 26.923 7.40 4.81 0.00 1.82
59 60 8.688747 TTGAATTCTTGGGCAATTGTAAATTT 57.311 26.923 7.40 0.00 0.00 1.82
60 61 8.321650 TGAATTCTTGGGCAATTGTAAATTTC 57.678 30.769 7.40 2.31 0.00 2.17
61 62 7.935755 TGAATTCTTGGGCAATTGTAAATTTCA 59.064 29.630 7.40 4.62 0.00 2.69
62 63 8.688747 AATTCTTGGGCAATTGTAAATTTCAA 57.311 26.923 7.40 0.00 0.00 2.69
63 64 8.688747 ATTCTTGGGCAATTGTAAATTTCAAA 57.311 26.923 7.40 0.00 0.00 2.69
64 65 8.688747 TTCTTGGGCAATTGTAAATTTCAAAT 57.311 26.923 7.40 0.00 0.00 2.32
65 66 8.321650 TCTTGGGCAATTGTAAATTTCAAATC 57.678 30.769 7.40 0.00 0.00 2.17
66 67 8.156165 TCTTGGGCAATTGTAAATTTCAAATCT 58.844 29.630 7.40 0.00 0.00 2.40
67 68 7.670009 TGGGCAATTGTAAATTTCAAATCTG 57.330 32.000 7.40 1.40 0.00 2.90
68 69 7.222872 TGGGCAATTGTAAATTTCAAATCTGT 58.777 30.769 7.40 0.00 0.00 3.41
69 70 7.718753 TGGGCAATTGTAAATTTCAAATCTGTT 59.281 29.630 7.40 0.00 0.00 3.16
70 71 8.567104 GGGCAATTGTAAATTTCAAATCTGTTT 58.433 29.630 7.40 0.00 0.00 2.83
71 72 9.949174 GGCAATTGTAAATTTCAAATCTGTTTT 57.051 25.926 7.40 0.00 0.00 2.43
112 113 6.966021 TCAATATTGCTAAGAAAATACGGCC 58.034 36.000 10.76 0.00 0.00 6.13
113 114 6.544197 TCAATATTGCTAAGAAAATACGGCCA 59.456 34.615 10.76 0.00 0.00 5.36
114 115 4.900635 ATTGCTAAGAAAATACGGCCAG 57.099 40.909 2.24 0.00 0.00 4.85
115 116 3.343941 TGCTAAGAAAATACGGCCAGT 57.656 42.857 2.24 4.29 0.00 4.00
116 117 3.006940 TGCTAAGAAAATACGGCCAGTG 58.993 45.455 2.24 0.00 0.00 3.66
117 118 3.007635 GCTAAGAAAATACGGCCAGTGT 58.992 45.455 2.24 0.00 0.00 3.55
118 119 3.439129 GCTAAGAAAATACGGCCAGTGTT 59.561 43.478 2.24 3.61 35.61 3.32
119 120 4.632688 GCTAAGAAAATACGGCCAGTGTTA 59.367 41.667 2.24 0.00 32.82 2.41
120 121 5.220605 GCTAAGAAAATACGGCCAGTGTTAG 60.221 44.000 2.24 2.15 32.82 2.34
121 122 4.546829 AGAAAATACGGCCAGTGTTAGA 57.453 40.909 2.24 0.00 32.82 2.10
122 123 5.099042 AGAAAATACGGCCAGTGTTAGAT 57.901 39.130 2.24 0.00 32.82 1.98
123 124 6.229936 AGAAAATACGGCCAGTGTTAGATA 57.770 37.500 2.24 0.00 32.82 1.98
124 125 6.047231 AGAAAATACGGCCAGTGTTAGATAC 58.953 40.000 2.24 0.00 32.82 2.24
125 126 4.332428 AATACGGCCAGTGTTAGATACC 57.668 45.455 2.24 0.00 32.19 2.73
126 127 0.828677 ACGGCCAGTGTTAGATACCC 59.171 55.000 2.24 0.00 0.00 3.69
127 128 0.106149 CGGCCAGTGTTAGATACCCC 59.894 60.000 2.24 0.00 0.00 4.95
128 129 0.472898 GGCCAGTGTTAGATACCCCC 59.527 60.000 0.00 0.00 0.00 5.40
129 130 1.508256 GCCAGTGTTAGATACCCCCT 58.492 55.000 0.00 0.00 0.00 4.79
130 131 1.416772 GCCAGTGTTAGATACCCCCTC 59.583 57.143 0.00 0.00 0.00 4.30
131 132 2.047830 CCAGTGTTAGATACCCCCTCC 58.952 57.143 0.00 0.00 0.00 4.30
132 133 1.687123 CAGTGTTAGATACCCCCTCCG 59.313 57.143 0.00 0.00 0.00 4.63
133 134 1.290130 AGTGTTAGATACCCCCTCCGT 59.710 52.381 0.00 0.00 0.00 4.69
134 135 2.113807 GTGTTAGATACCCCCTCCGTT 58.886 52.381 0.00 0.00 0.00 4.44
135 136 2.102084 GTGTTAGATACCCCCTCCGTTC 59.898 54.545 0.00 0.00 0.00 3.95
136 137 1.690893 GTTAGATACCCCCTCCGTTCC 59.309 57.143 0.00 0.00 0.00 3.62
137 138 1.238615 TAGATACCCCCTCCGTTCCT 58.761 55.000 0.00 0.00 0.00 3.36
138 139 1.238615 AGATACCCCCTCCGTTCCTA 58.761 55.000 0.00 0.00 0.00 2.94
139 140 1.577242 AGATACCCCCTCCGTTCCTAA 59.423 52.381 0.00 0.00 0.00 2.69
140 141 2.022722 AGATACCCCCTCCGTTCCTAAA 60.023 50.000 0.00 0.00 0.00 1.85
141 142 2.574074 TACCCCCTCCGTTCCTAAAT 57.426 50.000 0.00 0.00 0.00 1.40
142 143 2.574074 ACCCCCTCCGTTCCTAAATA 57.426 50.000 0.00 0.00 0.00 1.40
143 144 2.121948 ACCCCCTCCGTTCCTAAATAC 58.878 52.381 0.00 0.00 0.00 1.89
144 145 2.121129 CCCCCTCCGTTCCTAAATACA 58.879 52.381 0.00 0.00 0.00 2.29
145 146 2.506644 CCCCCTCCGTTCCTAAATACAA 59.493 50.000 0.00 0.00 0.00 2.41
146 147 3.433173 CCCCCTCCGTTCCTAAATACAAG 60.433 52.174 0.00 0.00 0.00 3.16
147 148 3.199289 CCCCTCCGTTCCTAAATACAAGT 59.801 47.826 0.00 0.00 0.00 3.16
148 149 4.439968 CCCTCCGTTCCTAAATACAAGTC 58.560 47.826 0.00 0.00 0.00 3.01
149 150 4.439968 CCTCCGTTCCTAAATACAAGTCC 58.560 47.826 0.00 0.00 0.00 3.85
150 151 4.161754 CCTCCGTTCCTAAATACAAGTCCT 59.838 45.833 0.00 0.00 0.00 3.85
151 152 5.338137 CCTCCGTTCCTAAATACAAGTCCTT 60.338 44.000 0.00 0.00 0.00 3.36
152 153 6.117975 TCCGTTCCTAAATACAAGTCCTTT 57.882 37.500 0.00 0.00 0.00 3.11
153 154 6.536447 TCCGTTCCTAAATACAAGTCCTTTT 58.464 36.000 0.00 0.00 0.00 2.27
154 155 7.678837 TCCGTTCCTAAATACAAGTCCTTTTA 58.321 34.615 0.00 0.00 0.00 1.52
155 156 7.820872 TCCGTTCCTAAATACAAGTCCTTTTAG 59.179 37.037 0.00 0.00 33.47 1.85
156 157 7.820872 CCGTTCCTAAATACAAGTCCTTTTAGA 59.179 37.037 0.00 0.00 34.90 2.10
157 158 8.870879 CGTTCCTAAATACAAGTCCTTTTAGAG 58.129 37.037 0.00 0.00 34.90 2.43
158 159 9.939802 GTTCCTAAATACAAGTCCTTTTAGAGA 57.060 33.333 0.00 0.00 34.90 3.10
191 192 7.801716 TGGACTACATATGGAGCAAAATAAC 57.198 36.000 15.30 0.00 0.00 1.89
192 193 7.573710 TGGACTACATATGGAGCAAAATAACT 58.426 34.615 15.30 0.00 0.00 2.24
193 194 7.498900 TGGACTACATATGGAGCAAAATAACTG 59.501 37.037 15.30 0.00 0.00 3.16
194 195 7.715249 GGACTACATATGGAGCAAAATAACTGA 59.285 37.037 15.30 0.00 0.00 3.41
195 196 9.109393 GACTACATATGGAGCAAAATAACTGAA 57.891 33.333 15.30 0.00 0.00 3.02
196 197 8.893727 ACTACATATGGAGCAAAATAACTGAAC 58.106 33.333 15.30 0.00 0.00 3.18
197 198 7.100458 ACATATGGAGCAAAATAACTGAACC 57.900 36.000 7.80 0.00 0.00 3.62
198 199 6.891908 ACATATGGAGCAAAATAACTGAACCT 59.108 34.615 7.80 0.00 0.00 3.50
199 200 8.052748 ACATATGGAGCAAAATAACTGAACCTA 58.947 33.333 7.80 0.00 0.00 3.08
200 201 9.071276 CATATGGAGCAAAATAACTGAACCTAT 57.929 33.333 0.00 0.00 0.00 2.57
204 205 9.555727 TGGAGCAAAATAACTGAACCTATATAC 57.444 33.333 0.00 0.00 0.00 1.47
205 206 9.555727 GGAGCAAAATAACTGAACCTATATACA 57.444 33.333 0.00 0.00 0.00 2.29
259 260 8.738645 AAAAAGACTTATATTAGGCACAGAGG 57.261 34.615 0.00 0.00 0.00 3.69
260 261 7.676683 AAAGACTTATATTAGGCACAGAGGA 57.323 36.000 0.00 0.00 0.00 3.71
261 262 7.676683 AAGACTTATATTAGGCACAGAGGAA 57.323 36.000 0.00 0.00 0.00 3.36
262 263 7.296628 AGACTTATATTAGGCACAGAGGAAG 57.703 40.000 0.00 0.00 0.00 3.46
269 270 1.478510 AGGCACAGAGGAAGTACATCG 59.521 52.381 0.00 0.00 34.26 3.84
275 276 4.580995 CACAGAGGAAGTACATCGGTATCT 59.419 45.833 0.00 0.00 35.81 1.98
309 311 4.569719 AGACAAGTAATTTGGGACGGAT 57.430 40.909 0.00 0.00 41.25 4.18
320 322 0.950116 GGGACGGATGGAGTACTACG 59.050 60.000 0.00 1.61 0.00 3.51
346 348 1.202627 GGATTCCGCTTCAGCTCATCT 60.203 52.381 0.00 0.00 39.32 2.90
472 479 2.689471 TGTACCGATGTATACACGCCTT 59.311 45.455 7.96 0.00 0.00 4.35
492 499 7.705325 ACGCCTTATTAATTAGTAGTGTGTCAG 59.295 37.037 0.00 0.00 0.00 3.51
494 501 7.494625 GCCTTATTAATTAGTAGTGTGTCAGCA 59.505 37.037 0.00 0.00 0.00 4.41
624 634 6.894654 TCCAAATGCCCTTTGTTAATCAGATA 59.105 34.615 7.75 0.00 42.29 1.98
625 635 7.564660 TCCAAATGCCCTTTGTTAATCAGATAT 59.435 33.333 7.75 0.00 42.29 1.63
675 691 1.026718 AGCCATACGCAGCCAAGTTC 61.027 55.000 0.00 0.00 41.38 3.01
742 758 3.674997 TCCACAAGGACAGAATGCTAAC 58.325 45.455 0.00 0.00 42.53 2.34
822 838 5.893897 AACCCTAAACTACTCACTACTCG 57.106 43.478 0.00 0.00 0.00 4.18
850 866 7.327214 ACAAAAACAACCATAAGCAAAGAAGA 58.673 30.769 0.00 0.00 0.00 2.87
851 867 7.821846 ACAAAAACAACCATAAGCAAAGAAGAA 59.178 29.630 0.00 0.00 0.00 2.52
852 868 8.330302 CAAAAACAACCATAAGCAAAGAAGAAG 58.670 33.333 0.00 0.00 0.00 2.85
918 934 4.354943 CCACCCCCTCCCTCTGGT 62.355 72.222 0.00 0.00 0.00 4.00
919 935 2.784984 CACCCCCTCCCTCTGGTA 59.215 66.667 0.00 0.00 0.00 3.25
920 936 1.383248 CACCCCCTCCCTCTGGTAG 60.383 68.421 0.00 0.00 0.00 3.18
921 937 1.867487 ACCCCCTCCCTCTGGTAGT 60.867 63.158 0.00 0.00 0.00 2.73
922 938 0.556888 ACCCCCTCCCTCTGGTAGTA 60.557 60.000 0.00 0.00 0.00 1.82
923 939 0.105607 CCCCCTCCCTCTGGTAGTAC 60.106 65.000 0.00 0.00 0.00 2.73
924 940 0.635009 CCCCTCCCTCTGGTAGTACA 59.365 60.000 2.06 0.00 0.00 2.90
925 941 1.411787 CCCCTCCCTCTGGTAGTACAG 60.412 61.905 2.06 0.00 39.84 2.74
926 942 1.288335 CCCTCCCTCTGGTAGTACAGT 59.712 57.143 2.06 0.00 39.48 3.55
927 943 2.379972 CCTCCCTCTGGTAGTACAGTG 58.620 57.143 2.06 0.00 39.48 3.66
928 944 1.751924 CTCCCTCTGGTAGTACAGTGC 59.248 57.143 2.06 0.00 39.48 4.40
929 945 0.824759 CCCTCTGGTAGTACAGTGCC 59.175 60.000 2.06 0.00 39.48 5.01
930 946 0.824759 CCTCTGGTAGTACAGTGCCC 59.175 60.000 2.06 0.00 39.48 5.36
931 947 0.456221 CTCTGGTAGTACAGTGCCCG 59.544 60.000 2.06 0.00 39.48 6.13
932 948 0.251474 TCTGGTAGTACAGTGCCCGT 60.251 55.000 2.06 0.00 39.48 5.28
933 949 0.108804 CTGGTAGTACAGTGCCCGTG 60.109 60.000 2.06 0.00 33.81 4.94
934 950 1.447314 GGTAGTACAGTGCCCGTGC 60.447 63.158 2.06 0.00 38.26 5.34
944 960 1.510383 TGCCCGTGCATATGTTTGC 59.490 52.632 4.29 1.75 44.23 3.68
945 961 1.586042 GCCCGTGCATATGTTTGCG 60.586 57.895 4.29 4.30 45.77 4.85
946 962 1.586042 CCCGTGCATATGTTTGCGC 60.586 57.895 0.00 0.00 45.77 6.09
950 966 3.698678 TGCATATGTTTGCGCAGTG 57.301 47.368 11.31 5.47 45.77 3.66
951 967 1.163554 TGCATATGTTTGCGCAGTGA 58.836 45.000 11.31 0.00 45.77 3.41
952 968 1.130938 TGCATATGTTTGCGCAGTGAG 59.869 47.619 11.31 0.00 45.77 3.51
953 969 1.398041 GCATATGTTTGCGCAGTGAGA 59.602 47.619 11.31 0.00 32.06 3.27
954 970 2.538333 GCATATGTTTGCGCAGTGAGAG 60.538 50.000 11.31 0.50 32.06 3.20
955 971 2.741759 TATGTTTGCGCAGTGAGAGA 57.258 45.000 11.31 0.00 0.00 3.10
956 972 2.105006 ATGTTTGCGCAGTGAGAGAT 57.895 45.000 11.31 0.00 0.00 2.75
957 973 1.432514 TGTTTGCGCAGTGAGAGATC 58.567 50.000 11.31 0.00 0.00 2.75
958 974 1.270252 TGTTTGCGCAGTGAGAGATCA 60.270 47.619 11.31 0.00 0.00 2.92
959 975 1.800586 GTTTGCGCAGTGAGAGATCAA 59.199 47.619 11.31 0.00 0.00 2.57
960 976 2.391616 TTGCGCAGTGAGAGATCAAT 57.608 45.000 11.31 0.00 0.00 2.57
982 1311 2.094258 TGATTTGTTCTTGCGATCGAGC 59.906 45.455 21.57 1.80 37.71 5.03
1015 1344 4.019411 TGAAAGCCATGAACTACCATGAGA 60.019 41.667 5.54 0.00 44.98 3.27
1328 1660 3.277602 CGGCCATAGCAGCAGCAG 61.278 66.667 2.24 0.00 45.49 4.24
1578 1910 4.214327 CTCTCGCTTCGCCTCCCC 62.214 72.222 0.00 0.00 0.00 4.81
2036 2368 2.882876 GCATGGCTTCTGCACCAG 59.117 61.111 0.00 0.00 39.88 4.00
2071 2403 1.148273 GTGGTGTGCCTCCAGTTCA 59.852 57.895 0.00 0.00 35.49 3.18
2123 2455 0.531532 GACATCATCCGCAGGGTCAG 60.532 60.000 0.00 0.00 28.78 3.51
2445 2777 1.538512 CTGAGGAAGTACGACAACGGA 59.461 52.381 0.00 0.00 44.46 4.69
2579 2920 2.119886 AGCTCAGCTGGATACCGAC 58.880 57.895 15.13 0.00 37.57 4.79
2581 2922 2.005960 GCTCAGCTGGATACCGACGT 62.006 60.000 15.13 0.00 0.00 4.34
2715 3062 1.743252 CTTTGACCGGAGAGCTGCC 60.743 63.158 9.46 0.00 0.00 4.85
2858 3213 3.052082 GGCGCATGGATGATCCCG 61.052 66.667 10.83 6.63 35.03 5.14
2865 3220 2.746142 GCATGGATGATCCCGTCTTTCA 60.746 50.000 9.36 0.00 35.03 2.69
2873 3228 0.391130 TCCCGTCTTTCATTGCTCCG 60.391 55.000 0.00 0.00 0.00 4.63
2884 3239 5.452078 TTCATTGCTCCGTTTCTGATTTT 57.548 34.783 0.00 0.00 0.00 1.82
2930 3286 7.823745 ATCTTGGTATATTCCAAATGGTGAC 57.176 36.000 14.03 0.00 45.26 3.67
2950 3306 4.225717 TGACCTCATCAAGTTGGATCATCA 59.774 41.667 2.34 0.00 33.02 3.07
2951 3307 4.521146 ACCTCATCAAGTTGGATCATCAC 58.479 43.478 2.34 0.00 0.00 3.06
2952 3308 4.226846 ACCTCATCAAGTTGGATCATCACT 59.773 41.667 2.34 0.00 0.00 3.41
3048 3406 8.871629 TTCCAAGTGGTATATTCTGCTTTTAA 57.128 30.769 0.00 0.00 36.34 1.52
3049 3407 8.871629 TCCAAGTGGTATATTCTGCTTTTAAA 57.128 30.769 0.00 0.00 36.34 1.52
3050 3408 9.303116 TCCAAGTGGTATATTCTGCTTTTAAAA 57.697 29.630 0.00 0.00 36.34 1.52
3087 3445 4.560128 GCTGAGCGTATCATTCTTGGATA 58.440 43.478 0.00 0.00 37.28 2.59
3119 3477 6.039717 CCTGGACCATTGTAAACTATGATTGG 59.960 42.308 0.00 0.00 32.15 3.16
3120 3478 6.489603 TGGACCATTGTAAACTATGATTGGT 58.510 36.000 6.17 0.00 38.86 3.67
3121 3479 6.951198 TGGACCATTGTAAACTATGATTGGTT 59.049 34.615 6.17 0.00 36.41 3.67
3122 3480 7.453126 TGGACCATTGTAAACTATGATTGGTTT 59.547 33.333 6.17 0.00 39.53 3.27
3123 3481 8.311109 GGACCATTGTAAACTATGATTGGTTTT 58.689 33.333 6.17 0.00 37.64 2.43
3124 3482 9.705290 GACCATTGTAAACTATGATTGGTTTTT 57.295 29.630 6.17 0.00 37.64 1.94
3179 3537 4.769688 TGTCAACTATGCCATCGAATCTT 58.230 39.130 0.00 0.00 0.00 2.40
3226 3584 9.796120 TCATTTTCCGAACCATTATTTGATAAC 57.204 29.630 0.00 0.00 0.00 1.89
3233 3591 7.123830 CGAACCATTATTTGATAACGAAGGTC 58.876 38.462 0.00 0.00 0.00 3.85
3242 3600 3.994392 TGATAACGAAGGTCACAAGAAGC 59.006 43.478 0.00 0.00 0.00 3.86
3264 3622 7.338800 AGCTAAATGAAAATCATACAGGTGG 57.661 36.000 0.00 0.00 35.76 4.61
3292 3650 2.351726 GCTACAGCTTGGTTATTGGACG 59.648 50.000 0.00 0.00 38.21 4.79
3299 3657 3.001330 GCTTGGTTATTGGACGATCTTCG 59.999 47.826 0.00 0.00 46.93 3.79
3322 3681 1.262950 CGCGAACCAACTTGTGATTGA 59.737 47.619 0.00 0.00 0.00 2.57
3325 3684 4.377943 CGCGAACCAACTTGTGATTGAATA 60.378 41.667 0.00 0.00 0.00 1.75
3328 3687 6.668323 CGAACCAACTTGTGATTGAATAGTT 58.332 36.000 0.00 0.00 0.00 2.24
3333 3692 9.349713 ACCAACTTGTGATTGAATAGTTAGAAA 57.650 29.630 0.00 0.00 0.00 2.52
3334 3693 9.831737 CCAACTTGTGATTGAATAGTTAGAAAG 57.168 33.333 0.00 0.00 0.00 2.62
3341 3700 9.424319 GTGATTGAATAGTTAGAAAGACAGTGA 57.576 33.333 0.00 0.00 0.00 3.41
3347 3706 9.699703 GAATAGTTAGAAAGACAGTGATATCCC 57.300 37.037 0.00 0.00 0.00 3.85
3348 3707 9.440761 AATAGTTAGAAAGACAGTGATATCCCT 57.559 33.333 0.00 0.00 0.00 4.20
3350 3709 7.560368 AGTTAGAAAGACAGTGATATCCCTTG 58.440 38.462 0.00 0.00 0.00 3.61
3355 3714 3.452627 AGACAGTGATATCCCTTGTCCAC 59.547 47.826 19.47 4.06 39.08 4.02
3356 3715 2.168521 ACAGTGATATCCCTTGTCCACG 59.831 50.000 0.00 0.00 0.00 4.94
3357 3716 1.762957 AGTGATATCCCTTGTCCACGG 59.237 52.381 0.00 0.00 0.00 4.94
3360 3719 1.705997 ATATCCCTTGTCCACGGGGC 61.706 60.000 0.00 0.00 40.12 5.80
3365 3724 1.672356 CTTGTCCACGGGGCTCAAG 60.672 63.158 20.84 20.84 38.46 3.02
3370 3729 1.746615 CCACGGGGCTCAAGTCATG 60.747 63.158 0.00 0.00 0.00 3.07
3373 3732 0.321653 ACGGGGCTCAAGTCATGAAC 60.322 55.000 0.00 0.00 37.67 3.18
3386 3745 5.824904 AGTCATGAACTTGATATTGGTGC 57.175 39.130 0.00 0.00 33.03 5.01
3390 3749 2.677836 TGAACTTGATATTGGTGCTCGC 59.322 45.455 0.00 0.00 0.00 5.03
3394 3753 3.696051 ACTTGATATTGGTGCTCGCATTT 59.304 39.130 0.00 0.00 0.00 2.32
3396 3755 4.291540 TGATATTGGTGCTCGCATTTTC 57.708 40.909 0.00 0.00 0.00 2.29
3399 3758 2.420628 TTGGTGCTCGCATTTTCTTG 57.579 45.000 0.00 0.00 0.00 3.02
3405 3764 4.380444 GGTGCTCGCATTTTCTTGGATTTA 60.380 41.667 0.00 0.00 0.00 1.40
3413 3772 6.532657 CGCATTTTCTTGGATTTATTTCAGCT 59.467 34.615 0.00 0.00 0.00 4.24
3421 3780 4.518970 TGGATTTATTTCAGCTATTCCGGC 59.481 41.667 0.00 0.00 0.00 6.13
3423 3782 3.462483 TTATTTCAGCTATTCCGGCGA 57.538 42.857 9.30 0.00 34.52 5.54
3439 3798 2.417339 GCGATATGCGTTCAGTAGGA 57.583 50.000 0.00 0.00 43.41 2.94
3440 3799 2.320367 GCGATATGCGTTCAGTAGGAG 58.680 52.381 0.00 0.00 43.41 3.69
3441 3800 2.922758 GCGATATGCGTTCAGTAGGAGG 60.923 54.545 0.00 0.00 43.41 4.30
3442 3801 2.552743 CGATATGCGTTCAGTAGGAGGA 59.447 50.000 0.00 0.00 34.64 3.71
3443 3802 3.191581 CGATATGCGTTCAGTAGGAGGAT 59.808 47.826 0.00 0.00 34.64 3.24
3444 3803 2.898729 ATGCGTTCAGTAGGAGGATG 57.101 50.000 0.00 0.00 0.00 3.51
3445 3804 1.557099 TGCGTTCAGTAGGAGGATGT 58.443 50.000 0.00 0.00 0.00 3.06
3446 3805 2.730382 TGCGTTCAGTAGGAGGATGTA 58.270 47.619 0.00 0.00 0.00 2.29
3447 3806 3.093814 TGCGTTCAGTAGGAGGATGTAA 58.906 45.455 0.00 0.00 0.00 2.41
3448 3807 3.119245 TGCGTTCAGTAGGAGGATGTAAC 60.119 47.826 0.00 0.00 0.00 2.50
3449 3808 3.119245 GCGTTCAGTAGGAGGATGTAACA 60.119 47.826 0.00 0.00 0.00 2.41
3450 3809 4.421948 CGTTCAGTAGGAGGATGTAACAC 58.578 47.826 0.00 0.00 0.00 3.32
3451 3810 4.677250 CGTTCAGTAGGAGGATGTAACACC 60.677 50.000 0.00 0.00 0.00 4.16
3452 3811 3.371965 TCAGTAGGAGGATGTAACACCC 58.628 50.000 0.00 0.00 0.00 4.61
3453 3812 2.434702 CAGTAGGAGGATGTAACACCCC 59.565 54.545 0.00 0.00 0.00 4.95
3454 3813 2.045326 AGTAGGAGGATGTAACACCCCA 59.955 50.000 0.00 0.00 0.00 4.96
3455 3814 1.584724 AGGAGGATGTAACACCCCAG 58.415 55.000 0.00 0.00 0.00 4.45
3456 3815 1.080498 AGGAGGATGTAACACCCCAGA 59.920 52.381 0.00 0.00 0.00 3.86
3457 3816 2.127708 GGAGGATGTAACACCCCAGAT 58.872 52.381 0.00 0.00 0.00 2.90
3458 3817 2.158755 GGAGGATGTAACACCCCAGATG 60.159 54.545 0.00 0.00 0.00 2.90
3459 3818 2.505819 GAGGATGTAACACCCCAGATGT 59.494 50.000 0.00 0.00 0.00 3.06
3460 3819 2.505819 AGGATGTAACACCCCAGATGTC 59.494 50.000 0.00 0.00 0.00 3.06
3461 3820 2.238646 GGATGTAACACCCCAGATGTCA 59.761 50.000 0.00 0.00 0.00 3.58
3462 3821 3.308117 GGATGTAACACCCCAGATGTCAA 60.308 47.826 0.00 0.00 0.00 3.18
3463 3822 3.417069 TGTAACACCCCAGATGTCAAG 57.583 47.619 0.00 0.00 0.00 3.02
3464 3823 2.084546 GTAACACCCCAGATGTCAAGC 58.915 52.381 0.00 0.00 0.00 4.01
3465 3824 0.773644 AACACCCCAGATGTCAAGCT 59.226 50.000 0.00 0.00 0.00 3.74
3466 3825 1.656587 ACACCCCAGATGTCAAGCTA 58.343 50.000 0.00 0.00 0.00 3.32
3467 3826 1.279271 ACACCCCAGATGTCAAGCTAC 59.721 52.381 0.00 0.00 0.00 3.58
3468 3827 1.278985 CACCCCAGATGTCAAGCTACA 59.721 52.381 0.00 0.00 0.00 2.74
3469 3828 1.556911 ACCCCAGATGTCAAGCTACAG 59.443 52.381 0.00 0.00 31.70 2.74
3470 3829 1.556911 CCCCAGATGTCAAGCTACAGT 59.443 52.381 0.00 0.00 31.70 3.55
3471 3830 2.625737 CCCAGATGTCAAGCTACAGTG 58.374 52.381 0.00 0.00 31.70 3.66
3472 3831 2.234661 CCCAGATGTCAAGCTACAGTGA 59.765 50.000 0.00 0.00 31.70 3.41
3473 3832 3.118482 CCCAGATGTCAAGCTACAGTGAT 60.118 47.826 0.00 0.00 31.70 3.06
3474 3833 4.118410 CCAGATGTCAAGCTACAGTGATC 58.882 47.826 0.00 0.00 31.70 2.92
3475 3834 4.141981 CCAGATGTCAAGCTACAGTGATCT 60.142 45.833 0.00 0.00 31.70 2.75
3476 3835 5.042593 CAGATGTCAAGCTACAGTGATCTC 58.957 45.833 0.00 0.00 31.70 2.75
3477 3836 4.708909 AGATGTCAAGCTACAGTGATCTCA 59.291 41.667 0.00 0.00 31.70 3.27
3478 3837 4.179926 TGTCAAGCTACAGTGATCTCAC 57.820 45.455 0.00 2.01 46.77 3.51
3492 3851 6.925610 GTGATCTCACACTAATTATGCCAA 57.074 37.500 5.46 0.00 45.75 4.52
3493 3852 6.952743 GTGATCTCACACTAATTATGCCAAG 58.047 40.000 5.46 0.00 45.75 3.61
3494 3853 6.540189 GTGATCTCACACTAATTATGCCAAGT 59.460 38.462 5.46 0.00 45.75 3.16
3495 3854 6.763135 TGATCTCACACTAATTATGCCAAGTC 59.237 38.462 0.00 0.00 0.00 3.01
3496 3855 6.048732 TCTCACACTAATTATGCCAAGTCA 57.951 37.500 0.00 0.00 0.00 3.41
3497 3856 6.653020 TCTCACACTAATTATGCCAAGTCAT 58.347 36.000 0.00 0.00 0.00 3.06
3498 3857 6.763135 TCTCACACTAATTATGCCAAGTCATC 59.237 38.462 0.00 0.00 0.00 2.92
3499 3858 6.413892 TCACACTAATTATGCCAAGTCATCA 58.586 36.000 0.00 0.00 0.00 3.07
3500 3859 7.056006 TCACACTAATTATGCCAAGTCATCAT 58.944 34.615 0.00 0.00 0.00 2.45
3501 3860 8.210265 TCACACTAATTATGCCAAGTCATCATA 58.790 33.333 0.00 0.00 0.00 2.15
3502 3861 9.006839 CACACTAATTATGCCAAGTCATCATAT 57.993 33.333 0.00 0.00 0.00 1.78
3503 3862 9.224267 ACACTAATTATGCCAAGTCATCATATC 57.776 33.333 0.00 0.00 0.00 1.63
3504 3863 9.223099 CACTAATTATGCCAAGTCATCATATCA 57.777 33.333 0.00 0.00 0.00 2.15
3505 3864 9.797642 ACTAATTATGCCAAGTCATCATATCAA 57.202 29.630 0.00 0.00 0.00 2.57
3507 3866 6.564709 TTATGCCAAGTCATCATATCAAGC 57.435 37.500 0.00 0.00 0.00 4.01
3508 3867 3.216800 TGCCAAGTCATCATATCAAGCC 58.783 45.455 0.00 0.00 0.00 4.35
3509 3868 3.216800 GCCAAGTCATCATATCAAGCCA 58.783 45.455 0.00 0.00 0.00 4.75
3510 3869 3.633525 GCCAAGTCATCATATCAAGCCAA 59.366 43.478 0.00 0.00 0.00 4.52
3511 3870 4.261489 GCCAAGTCATCATATCAAGCCAAG 60.261 45.833 0.00 0.00 0.00 3.61
3512 3871 4.885907 CCAAGTCATCATATCAAGCCAAGT 59.114 41.667 0.00 0.00 0.00 3.16
3513 3872 5.008415 CCAAGTCATCATATCAAGCCAAGTC 59.992 44.000 0.00 0.00 0.00 3.01
3514 3873 5.363562 AGTCATCATATCAAGCCAAGTCA 57.636 39.130 0.00 0.00 0.00 3.41
3515 3874 5.938279 AGTCATCATATCAAGCCAAGTCAT 58.062 37.500 0.00 0.00 0.00 3.06
3516 3875 6.363065 AGTCATCATATCAAGCCAAGTCATT 58.637 36.000 0.00 0.00 0.00 2.57
3517 3876 6.832384 AGTCATCATATCAAGCCAAGTCATTT 59.168 34.615 0.00 0.00 0.00 2.32
3518 3877 6.916387 GTCATCATATCAAGCCAAGTCATTTG 59.084 38.462 0.00 0.00 36.50 2.32
3519 3878 5.252969 TCATATCAAGCCAAGTCATTTGC 57.747 39.130 0.00 0.00 35.37 3.68
3520 3879 4.098349 TCATATCAAGCCAAGTCATTTGCC 59.902 41.667 0.00 0.00 35.37 4.52
3521 3880 1.702182 TCAAGCCAAGTCATTTGCCA 58.298 45.000 0.00 0.00 35.37 4.92
3522 3881 1.340889 TCAAGCCAAGTCATTTGCCAC 59.659 47.619 0.00 0.00 35.37 5.01
3523 3882 1.342174 CAAGCCAAGTCATTTGCCACT 59.658 47.619 0.00 0.00 35.37 4.00
3524 3883 1.708341 AGCCAAGTCATTTGCCACTT 58.292 45.000 0.00 0.00 35.37 3.16
3525 3884 1.342174 AGCCAAGTCATTTGCCACTTG 59.658 47.619 5.06 5.06 46.19 3.16
3526 3885 1.069049 GCCAAGTCATTTGCCACTTGT 59.931 47.619 10.15 0.00 45.49 3.16
3527 3886 2.483538 GCCAAGTCATTTGCCACTTGTT 60.484 45.455 10.15 0.00 45.49 2.83
3528 3887 3.795877 CCAAGTCATTTGCCACTTGTTT 58.204 40.909 10.15 0.00 45.49 2.83
3529 3888 3.556775 CCAAGTCATTTGCCACTTGTTTG 59.443 43.478 10.15 0.00 45.49 2.93
3530 3889 4.431809 CAAGTCATTTGCCACTTGTTTGA 58.568 39.130 4.03 0.00 43.07 2.69
3531 3890 4.734398 AGTCATTTGCCACTTGTTTGAA 57.266 36.364 0.00 0.00 0.00 2.69
3532 3891 5.083533 AGTCATTTGCCACTTGTTTGAAA 57.916 34.783 0.00 0.00 0.00 2.69
3533 3892 5.673514 AGTCATTTGCCACTTGTTTGAAAT 58.326 33.333 0.00 0.00 0.00 2.17
3534 3893 6.114767 AGTCATTTGCCACTTGTTTGAAATT 58.885 32.000 0.00 0.00 0.00 1.82
3535 3894 7.271511 AGTCATTTGCCACTTGTTTGAAATTA 58.728 30.769 0.00 0.00 0.00 1.40
3536 3895 7.768120 AGTCATTTGCCACTTGTTTGAAATTAA 59.232 29.630 0.00 0.00 0.00 1.40
3537 3896 8.558700 GTCATTTGCCACTTGTTTGAAATTAAT 58.441 29.630 0.00 0.00 0.00 1.40
3538 3897 9.118300 TCATTTGCCACTTGTTTGAAATTAATT 57.882 25.926 0.00 0.00 0.00 1.40
3543 3902 9.364989 TGCCACTTGTTTGAAATTAATTATAGC 57.635 29.630 0.01 0.00 0.00 2.97
3544 3903 9.586435 GCCACTTGTTTGAAATTAATTATAGCT 57.414 29.630 0.01 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.930229 CGATTTACTCACCGTTGGATCAA 59.070 43.478 0.00 0.00 0.00 2.57
1 2 3.193903 TCGATTTACTCACCGTTGGATCA 59.806 43.478 0.00 0.00 0.00 2.92
2 3 3.550678 GTCGATTTACTCACCGTTGGATC 59.449 47.826 0.00 0.00 0.00 3.36
3 4 3.518590 GTCGATTTACTCACCGTTGGAT 58.481 45.455 0.00 0.00 0.00 3.41
4 5 2.353011 GGTCGATTTACTCACCGTTGGA 60.353 50.000 0.00 0.00 0.00 3.53
5 6 1.997606 GGTCGATTTACTCACCGTTGG 59.002 52.381 0.00 0.00 0.00 3.77
6 7 1.652124 CGGTCGATTTACTCACCGTTG 59.348 52.381 1.13 0.00 40.56 4.10
7 8 1.541147 TCGGTCGATTTACTCACCGTT 59.459 47.619 9.05 0.00 43.28 4.44
8 9 1.131883 CTCGGTCGATTTACTCACCGT 59.868 52.381 9.05 0.00 43.28 4.83
9 10 1.399440 TCTCGGTCGATTTACTCACCG 59.601 52.381 2.90 2.90 43.72 4.94
10 11 2.681848 TCTCTCGGTCGATTTACTCACC 59.318 50.000 0.00 0.00 0.00 4.02
11 12 4.555348 ATCTCTCGGTCGATTTACTCAC 57.445 45.455 0.00 0.00 0.00 3.51
12 13 6.485648 TCAATATCTCTCGGTCGATTTACTCA 59.514 38.462 0.00 0.00 0.00 3.41
13 14 6.900189 TCAATATCTCTCGGTCGATTTACTC 58.100 40.000 0.00 0.00 0.00 2.59
14 15 6.879276 TCAATATCTCTCGGTCGATTTACT 57.121 37.500 0.00 0.00 0.00 2.24
15 16 8.522178 AATTCAATATCTCTCGGTCGATTTAC 57.478 34.615 0.00 0.00 0.00 2.01
16 17 8.577296 AGAATTCAATATCTCTCGGTCGATTTA 58.423 33.333 8.44 0.00 0.00 1.40
17 18 7.437748 AGAATTCAATATCTCTCGGTCGATTT 58.562 34.615 8.44 0.00 0.00 2.17
18 19 6.987386 AGAATTCAATATCTCTCGGTCGATT 58.013 36.000 8.44 0.00 0.00 3.34
19 20 6.582677 AGAATTCAATATCTCTCGGTCGAT 57.417 37.500 8.44 0.00 0.00 3.59
20 21 6.209361 CAAGAATTCAATATCTCTCGGTCGA 58.791 40.000 8.44 0.00 0.00 4.20
21 22 5.403766 CCAAGAATTCAATATCTCTCGGTCG 59.596 44.000 8.44 0.00 0.00 4.79
22 23 5.698545 CCCAAGAATTCAATATCTCTCGGTC 59.301 44.000 8.44 0.00 0.00 4.79
23 24 5.615289 CCCAAGAATTCAATATCTCTCGGT 58.385 41.667 8.44 0.00 0.00 4.69
24 25 4.453819 GCCCAAGAATTCAATATCTCTCGG 59.546 45.833 8.44 0.00 0.00 4.63
25 26 5.059161 TGCCCAAGAATTCAATATCTCTCG 58.941 41.667 8.44 0.00 0.00 4.04
26 27 6.949352 TTGCCCAAGAATTCAATATCTCTC 57.051 37.500 8.44 0.00 0.00 3.20
27 28 7.343833 ACAATTGCCCAAGAATTCAATATCTCT 59.656 33.333 8.44 0.00 0.00 3.10
28 29 7.495055 ACAATTGCCCAAGAATTCAATATCTC 58.505 34.615 8.44 0.00 0.00 2.75
29 30 7.427989 ACAATTGCCCAAGAATTCAATATCT 57.572 32.000 8.44 0.00 0.00 1.98
30 31 9.598517 TTTACAATTGCCCAAGAATTCAATATC 57.401 29.630 8.44 0.00 0.00 1.63
32 33 9.956640 AATTTACAATTGCCCAAGAATTCAATA 57.043 25.926 8.44 0.00 0.00 1.90
33 34 8.866970 AATTTACAATTGCCCAAGAATTCAAT 57.133 26.923 8.44 0.00 0.00 2.57
34 35 8.688747 AAATTTACAATTGCCCAAGAATTCAA 57.311 26.923 8.44 0.00 0.00 2.69
35 36 7.935755 TGAAATTTACAATTGCCCAAGAATTCA 59.064 29.630 8.44 4.21 0.00 2.57
36 37 8.321650 TGAAATTTACAATTGCCCAAGAATTC 57.678 30.769 5.05 0.00 0.00 2.17
37 38 8.688747 TTGAAATTTACAATTGCCCAAGAATT 57.311 26.923 5.05 1.17 0.00 2.17
38 39 8.688747 TTTGAAATTTACAATTGCCCAAGAAT 57.311 26.923 5.05 0.00 0.00 2.40
39 40 8.688747 ATTTGAAATTTACAATTGCCCAAGAA 57.311 26.923 5.05 0.00 0.00 2.52
40 41 8.156165 AGATTTGAAATTTACAATTGCCCAAGA 58.844 29.630 5.05 0.00 0.00 3.02
41 42 8.231837 CAGATTTGAAATTTACAATTGCCCAAG 58.768 33.333 5.05 0.00 0.00 3.61
42 43 7.718753 ACAGATTTGAAATTTACAATTGCCCAA 59.281 29.630 5.05 0.00 0.00 4.12
43 44 7.222872 ACAGATTTGAAATTTACAATTGCCCA 58.777 30.769 5.05 0.00 0.00 5.36
44 45 7.671495 ACAGATTTGAAATTTACAATTGCCC 57.329 32.000 5.05 0.00 0.00 5.36
45 46 9.949174 AAAACAGATTTGAAATTTACAATTGCC 57.051 25.926 5.05 0.00 0.00 4.52
86 87 8.082242 GGCCGTATTTTCTTAGCAATATTGATT 58.918 33.333 19.73 8.66 0.00 2.57
87 88 7.230510 TGGCCGTATTTTCTTAGCAATATTGAT 59.769 33.333 19.73 15.64 0.00 2.57
88 89 6.544197 TGGCCGTATTTTCTTAGCAATATTGA 59.456 34.615 19.73 0.00 0.00 2.57
89 90 6.734137 TGGCCGTATTTTCTTAGCAATATTG 58.266 36.000 11.27 11.27 0.00 1.90
90 91 6.546034 ACTGGCCGTATTTTCTTAGCAATATT 59.454 34.615 0.00 0.00 0.00 1.28
91 92 6.017109 CACTGGCCGTATTTTCTTAGCAATAT 60.017 38.462 0.00 0.00 0.00 1.28
92 93 5.295787 CACTGGCCGTATTTTCTTAGCAATA 59.704 40.000 0.00 0.00 0.00 1.90
93 94 4.096382 CACTGGCCGTATTTTCTTAGCAAT 59.904 41.667 0.00 0.00 0.00 3.56
94 95 3.438781 CACTGGCCGTATTTTCTTAGCAA 59.561 43.478 0.00 0.00 0.00 3.91
95 96 3.006940 CACTGGCCGTATTTTCTTAGCA 58.993 45.455 0.00 0.00 0.00 3.49
96 97 3.007635 ACACTGGCCGTATTTTCTTAGC 58.992 45.455 0.00 0.00 0.00 3.09
97 98 6.103997 TCTAACACTGGCCGTATTTTCTTAG 58.896 40.000 0.00 0.00 0.00 2.18
98 99 6.040209 TCTAACACTGGCCGTATTTTCTTA 57.960 37.500 0.00 0.00 0.00 2.10
99 100 4.901868 TCTAACACTGGCCGTATTTTCTT 58.098 39.130 0.00 0.00 0.00 2.52
100 101 4.546829 TCTAACACTGGCCGTATTTTCT 57.453 40.909 0.00 0.00 0.00 2.52
101 102 5.235831 GGTATCTAACACTGGCCGTATTTTC 59.764 44.000 0.00 0.00 0.00 2.29
102 103 5.121105 GGTATCTAACACTGGCCGTATTTT 58.879 41.667 0.00 0.00 0.00 1.82
103 104 4.443881 GGGTATCTAACACTGGCCGTATTT 60.444 45.833 0.00 0.00 0.00 1.40
104 105 3.070590 GGGTATCTAACACTGGCCGTATT 59.929 47.826 0.00 0.00 0.00 1.89
105 106 2.631545 GGGTATCTAACACTGGCCGTAT 59.368 50.000 0.00 0.00 0.00 3.06
106 107 2.034124 GGGTATCTAACACTGGCCGTA 58.966 52.381 0.00 0.00 0.00 4.02
107 108 0.828677 GGGTATCTAACACTGGCCGT 59.171 55.000 0.00 0.00 0.00 5.68
108 109 0.106149 GGGGTATCTAACACTGGCCG 59.894 60.000 0.00 0.00 0.00 6.13
109 110 0.472898 GGGGGTATCTAACACTGGCC 59.527 60.000 0.00 0.00 0.00 5.36
110 111 1.416772 GAGGGGGTATCTAACACTGGC 59.583 57.143 0.00 0.00 0.00 4.85
111 112 2.047830 GGAGGGGGTATCTAACACTGG 58.952 57.143 0.00 0.00 0.00 4.00
112 113 1.687123 CGGAGGGGGTATCTAACACTG 59.313 57.143 0.00 0.00 0.00 3.66
113 114 1.290130 ACGGAGGGGGTATCTAACACT 59.710 52.381 0.00 0.00 0.00 3.55
114 115 1.785647 ACGGAGGGGGTATCTAACAC 58.214 55.000 0.00 0.00 0.00 3.32
115 116 2.391678 GAACGGAGGGGGTATCTAACA 58.608 52.381 0.00 0.00 0.00 2.41
116 117 1.690893 GGAACGGAGGGGGTATCTAAC 59.309 57.143 0.00 0.00 0.00 2.34
117 118 1.577242 AGGAACGGAGGGGGTATCTAA 59.423 52.381 0.00 0.00 0.00 2.10
118 119 1.238615 AGGAACGGAGGGGGTATCTA 58.761 55.000 0.00 0.00 0.00 1.98
119 120 1.238615 TAGGAACGGAGGGGGTATCT 58.761 55.000 0.00 0.00 0.00 1.98
120 121 2.092598 TTAGGAACGGAGGGGGTATC 57.907 55.000 0.00 0.00 0.00 2.24
121 122 2.574074 TTTAGGAACGGAGGGGGTAT 57.426 50.000 0.00 0.00 0.00 2.73
122 123 2.574074 ATTTAGGAACGGAGGGGGTA 57.426 50.000 0.00 0.00 0.00 3.69
123 124 2.121948 GTATTTAGGAACGGAGGGGGT 58.878 52.381 0.00 0.00 0.00 4.95
124 125 2.121129 TGTATTTAGGAACGGAGGGGG 58.879 52.381 0.00 0.00 0.00 5.40
125 126 3.199289 ACTTGTATTTAGGAACGGAGGGG 59.801 47.826 0.00 0.00 0.00 4.79
126 127 4.439968 GACTTGTATTTAGGAACGGAGGG 58.560 47.826 0.00 0.00 0.00 4.30
127 128 4.161754 AGGACTTGTATTTAGGAACGGAGG 59.838 45.833 0.00 0.00 0.00 4.30
128 129 5.340439 AGGACTTGTATTTAGGAACGGAG 57.660 43.478 0.00 0.00 0.00 4.63
129 130 5.750352 AAGGACTTGTATTTAGGAACGGA 57.250 39.130 0.00 0.00 0.00 4.69
130 131 6.812879 AAAAGGACTTGTATTTAGGAACGG 57.187 37.500 0.00 0.00 0.00 4.44
131 132 8.767478 TCTAAAAGGACTTGTATTTAGGAACG 57.233 34.615 0.00 0.00 36.48 3.95
132 133 9.939802 TCTCTAAAAGGACTTGTATTTAGGAAC 57.060 33.333 0.00 0.00 36.48 3.62
157 158 9.319143 GCTCCATATGTAGTCCATATTGTAATC 57.681 37.037 1.24 0.00 42.87 1.75
158 159 8.825774 TGCTCCATATGTAGTCCATATTGTAAT 58.174 33.333 1.24 0.00 42.87 1.89
159 160 8.201242 TGCTCCATATGTAGTCCATATTGTAA 57.799 34.615 1.24 0.00 42.87 2.41
160 161 7.790782 TGCTCCATATGTAGTCCATATTGTA 57.209 36.000 1.24 0.00 42.87 2.41
161 162 6.686484 TGCTCCATATGTAGTCCATATTGT 57.314 37.500 1.24 0.00 42.87 2.71
162 163 7.984422 TTTGCTCCATATGTAGTCCATATTG 57.016 36.000 1.24 0.00 42.87 1.90
165 166 9.502091 GTTATTTTGCTCCATATGTAGTCCATA 57.498 33.333 1.24 0.00 40.27 2.74
166 167 8.220559 AGTTATTTTGCTCCATATGTAGTCCAT 58.779 33.333 1.24 0.00 37.58 3.41
167 168 7.498900 CAGTTATTTTGCTCCATATGTAGTCCA 59.501 37.037 1.24 0.00 0.00 4.02
168 169 7.715249 TCAGTTATTTTGCTCCATATGTAGTCC 59.285 37.037 1.24 0.00 0.00 3.85
169 170 8.662781 TCAGTTATTTTGCTCCATATGTAGTC 57.337 34.615 1.24 0.00 0.00 2.59
170 171 8.893727 GTTCAGTTATTTTGCTCCATATGTAGT 58.106 33.333 1.24 0.00 0.00 2.73
171 172 8.345565 GGTTCAGTTATTTTGCTCCATATGTAG 58.654 37.037 1.24 0.00 0.00 2.74
172 173 8.052748 AGGTTCAGTTATTTTGCTCCATATGTA 58.947 33.333 1.24 0.00 0.00 2.29
173 174 6.891908 AGGTTCAGTTATTTTGCTCCATATGT 59.108 34.615 1.24 0.00 0.00 2.29
174 175 7.338800 AGGTTCAGTTATTTTGCTCCATATG 57.661 36.000 0.00 0.00 0.00 1.78
178 179 9.555727 GTATATAGGTTCAGTTATTTTGCTCCA 57.444 33.333 0.00 0.00 0.00 3.86
179 180 9.555727 TGTATATAGGTTCAGTTATTTTGCTCC 57.444 33.333 0.00 0.00 0.00 4.70
233 234 9.832445 CCTCTGTGCCTAATATAAGTCTTTTTA 57.168 33.333 0.00 0.00 0.00 1.52
234 235 8.548877 TCCTCTGTGCCTAATATAAGTCTTTTT 58.451 33.333 0.00 0.00 0.00 1.94
235 236 8.090788 TCCTCTGTGCCTAATATAAGTCTTTT 57.909 34.615 0.00 0.00 0.00 2.27
236 237 7.676683 TCCTCTGTGCCTAATATAAGTCTTT 57.323 36.000 0.00 0.00 0.00 2.52
237 238 7.345914 ACTTCCTCTGTGCCTAATATAAGTCTT 59.654 37.037 0.00 0.00 0.00 3.01
238 239 6.841755 ACTTCCTCTGTGCCTAATATAAGTCT 59.158 38.462 0.00 0.00 0.00 3.24
239 240 7.056844 ACTTCCTCTGTGCCTAATATAAGTC 57.943 40.000 0.00 0.00 0.00 3.01
240 241 7.563924 TGTACTTCCTCTGTGCCTAATATAAGT 59.436 37.037 0.00 0.00 0.00 2.24
241 242 7.952671 TGTACTTCCTCTGTGCCTAATATAAG 58.047 38.462 0.00 0.00 0.00 1.73
242 243 7.907841 TGTACTTCCTCTGTGCCTAATATAA 57.092 36.000 0.00 0.00 0.00 0.98
243 244 7.094334 CGATGTACTTCCTCTGTGCCTAATATA 60.094 40.741 3.35 0.00 0.00 0.86
244 245 6.294787 CGATGTACTTCCTCTGTGCCTAATAT 60.295 42.308 3.35 0.00 0.00 1.28
245 246 5.009710 CGATGTACTTCCTCTGTGCCTAATA 59.990 44.000 3.35 0.00 0.00 0.98
246 247 4.202161 CGATGTACTTCCTCTGTGCCTAAT 60.202 45.833 3.35 0.00 0.00 1.73
247 248 3.130516 CGATGTACTTCCTCTGTGCCTAA 59.869 47.826 3.35 0.00 0.00 2.69
248 249 2.688446 CGATGTACTTCCTCTGTGCCTA 59.312 50.000 3.35 0.00 0.00 3.93
249 250 1.478510 CGATGTACTTCCTCTGTGCCT 59.521 52.381 3.35 0.00 0.00 4.75
250 251 1.471676 CCGATGTACTTCCTCTGTGCC 60.472 57.143 3.35 0.00 0.00 5.01
251 252 1.204941 ACCGATGTACTTCCTCTGTGC 59.795 52.381 3.35 0.00 0.00 4.57
252 253 4.580995 AGATACCGATGTACTTCCTCTGTG 59.419 45.833 3.35 0.00 0.00 3.66
253 254 4.794334 AGATACCGATGTACTTCCTCTGT 58.206 43.478 3.35 0.00 0.00 3.41
254 255 5.776173 AAGATACCGATGTACTTCCTCTG 57.224 43.478 3.35 0.00 0.00 3.35
255 256 6.711645 GTCTAAGATACCGATGTACTTCCTCT 59.288 42.308 3.35 0.00 0.00 3.69
256 257 6.485984 TGTCTAAGATACCGATGTACTTCCTC 59.514 42.308 3.35 0.00 0.00 3.71
257 258 6.363065 TGTCTAAGATACCGATGTACTTCCT 58.637 40.000 3.35 0.00 0.00 3.36
258 259 6.630444 TGTCTAAGATACCGATGTACTTCC 57.370 41.667 3.35 0.00 0.00 3.46
259 260 9.182933 GATTTGTCTAAGATACCGATGTACTTC 57.817 37.037 0.00 0.00 0.00 3.01
260 261 8.915036 AGATTTGTCTAAGATACCGATGTACTT 58.085 33.333 0.00 0.00 0.00 2.24
261 262 8.466617 AGATTTGTCTAAGATACCGATGTACT 57.533 34.615 0.00 0.00 0.00 2.73
294 296 3.277142 ACTCCATCCGTCCCAAATTAC 57.723 47.619 0.00 0.00 0.00 1.89
309 311 4.643784 GGAATCCTTCTTCGTAGTACTCCA 59.356 45.833 0.00 0.00 0.00 3.86
320 322 1.668237 GCTGAAGCGGAATCCTTCTTC 59.332 52.381 18.14 18.14 39.47 2.87
346 348 8.726988 CGAAGAGGTAAATGATTGTTAAAAGGA 58.273 33.333 0.00 0.00 0.00 3.36
402 405 5.172934 GTCATACAATACGAGTTTCCACCA 58.827 41.667 0.00 0.00 0.00 4.17
472 479 7.865889 CCGATGCTGACACACTACTAATTAATA 59.134 37.037 0.00 0.00 0.00 0.98
492 499 3.613702 CGTACGTTCCGCCGATGC 61.614 66.667 7.22 0.00 0.00 3.91
494 501 2.100991 GACGTACGTTCCGCCGAT 59.899 61.111 23.70 0.00 0.00 4.18
551 561 8.079211 TCTTAATAGGTGTCTTGCTTCAGTAT 57.921 34.615 0.00 0.00 0.00 2.12
592 602 4.341366 CAAAGGGCATTTGGAATATCCC 57.659 45.455 16.35 0.00 43.88 3.85
628 638 9.400638 CCGTGCAAAACATTAGTATTCTAAAAA 57.599 29.630 0.00 0.00 39.23 1.94
640 650 0.885196 GGCTCCCGTGCAAAACATTA 59.115 50.000 0.00 0.00 34.04 1.90
688 704 7.933033 ACATGTTTTCTGCAAATTTGGAGTATT 59.067 29.630 31.08 13.98 45.50 1.89
689 705 7.444299 ACATGTTTTCTGCAAATTTGGAGTAT 58.556 30.769 31.08 18.68 45.50 2.12
742 758 3.956199 ACCAGGCATCAAAATGGAGTATG 59.044 43.478 0.00 0.00 36.62 2.39
822 838 6.699642 TCTTTGCTTATGGTTGTTTTTGTAGC 59.300 34.615 0.00 0.00 0.00 3.58
909 925 1.618888 GGCACTGTACTACCAGAGGGA 60.619 57.143 0.00 0.00 38.05 4.20
911 927 0.824759 GGGCACTGTACTACCAGAGG 59.175 60.000 0.00 0.00 36.30 3.69
912 928 0.456221 CGGGCACTGTACTACCAGAG 59.544 60.000 0.00 0.00 36.30 3.35
913 929 2.575108 CGGGCACTGTACTACCAGA 58.425 57.895 0.00 0.00 36.30 3.86
927 943 1.586042 CGCAAACATATGCACGGGC 60.586 57.895 0.34 0.34 46.76 6.13
928 944 1.586042 GCGCAAACATATGCACGGG 60.586 57.895 0.30 0.77 46.76 5.28
929 945 0.862701 CTGCGCAAACATATGCACGG 60.863 55.000 13.05 0.00 46.76 4.94
930 946 0.179192 ACTGCGCAAACATATGCACG 60.179 50.000 13.05 2.87 46.76 5.34
931 947 1.135717 TCACTGCGCAAACATATGCAC 60.136 47.619 13.05 0.00 46.76 4.57
932 948 1.130938 CTCACTGCGCAAACATATGCA 59.869 47.619 13.05 0.00 46.76 3.96
933 949 1.398041 TCTCACTGCGCAAACATATGC 59.602 47.619 13.05 0.00 42.94 3.14
934 950 2.931969 TCTCTCACTGCGCAAACATATG 59.068 45.455 13.05 0.00 0.00 1.78
935 951 3.251479 TCTCTCACTGCGCAAACATAT 57.749 42.857 13.05 0.00 0.00 1.78
936 952 2.741759 TCTCTCACTGCGCAAACATA 57.258 45.000 13.05 0.00 0.00 2.29
937 953 2.005451 GATCTCTCACTGCGCAAACAT 58.995 47.619 13.05 0.00 0.00 2.71
938 954 1.270252 TGATCTCTCACTGCGCAAACA 60.270 47.619 13.05 0.00 0.00 2.83
939 955 1.432514 TGATCTCTCACTGCGCAAAC 58.567 50.000 13.05 0.00 0.00 2.93
940 956 2.168326 TTGATCTCTCACTGCGCAAA 57.832 45.000 13.05 0.00 0.00 3.68
941 957 2.391616 ATTGATCTCTCACTGCGCAA 57.608 45.000 13.05 0.00 0.00 4.85
942 958 2.004733 CAATTGATCTCTCACTGCGCA 58.995 47.619 10.98 10.98 0.00 6.09
943 959 2.274437 TCAATTGATCTCTCACTGCGC 58.726 47.619 3.38 0.00 0.00 6.09
944 960 5.163784 ACAAATCAATTGATCTCTCACTGCG 60.164 40.000 20.95 2.58 41.85 5.18
945 961 6.192234 ACAAATCAATTGATCTCTCACTGC 57.808 37.500 20.95 0.00 41.85 4.40
946 962 8.041829 AGAACAAATCAATTGATCTCTCACTG 57.958 34.615 20.95 11.61 45.04 3.66
947 963 8.512956 CAAGAACAAATCAATTGATCTCTCACT 58.487 33.333 20.95 12.93 46.80 3.41
948 964 7.272948 GCAAGAACAAATCAATTGATCTCTCAC 59.727 37.037 20.95 11.14 46.80 3.51
949 965 7.310664 GCAAGAACAAATCAATTGATCTCTCA 58.689 34.615 20.95 0.00 46.80 3.27
950 966 6.468319 CGCAAGAACAAATCAATTGATCTCTC 59.532 38.462 20.95 14.32 46.80 3.20
951 967 6.149973 TCGCAAGAACAAATCAATTGATCTCT 59.850 34.615 20.95 16.05 46.80 3.10
952 968 6.317088 TCGCAAGAACAAATCAATTGATCTC 58.683 36.000 20.95 14.33 46.80 2.75
996 1325 3.118112 CCTTCTCATGGTAGTTCATGGCT 60.118 47.826 5.20 0.00 43.33 4.75
1015 1344 1.893919 GCGAGCTCTTGACCCTCCTT 61.894 60.000 12.85 0.00 0.00 3.36
1959 2291 3.006940 CAGCTTAATGGACTTGGCGTAA 58.993 45.455 0.00 0.00 0.00 3.18
2002 2334 3.003113 GCGCGGGGTCTAGTGAACT 62.003 63.158 8.83 0.00 0.00 3.01
2003 2335 2.508663 GCGCGGGGTCTAGTGAAC 60.509 66.667 8.83 0.00 0.00 3.18
2028 2360 3.633094 CTCGTCGGGACTGGTGCAG 62.633 68.421 0.00 0.00 37.52 4.41
2123 2455 2.435059 GGTGCGGCTTGAGGTCTC 60.435 66.667 0.00 0.00 0.00 3.36
2148 2480 3.622203 CCGACGTCGAGCTCTGATAGC 62.622 61.905 37.65 0.00 42.77 2.97
2445 2777 2.911143 GCCGTGGACATCTCCCAT 59.089 61.111 0.00 0.00 35.34 4.00
2561 2902 1.729470 CGTCGGTATCCAGCTGAGCT 61.729 60.000 17.39 0.00 40.77 4.09
2562 2903 1.299468 CGTCGGTATCCAGCTGAGC 60.299 63.158 17.39 3.92 0.00 4.26
2564 2905 1.019673 GTACGTCGGTATCCAGCTGA 58.980 55.000 17.39 1.21 0.00 4.26
2565 2906 0.316772 CGTACGTCGGTATCCAGCTG 60.317 60.000 6.78 6.78 35.71 4.24
2566 2907 0.745845 ACGTACGTCGGTATCCAGCT 60.746 55.000 16.72 0.00 44.69 4.24
2567 2908 0.316524 GACGTACGTCGGTATCCAGC 60.317 60.000 30.48 6.65 44.69 4.85
2568 2909 3.814049 GACGTACGTCGGTATCCAG 57.186 57.895 30.48 0.00 44.69 3.86
2579 2920 2.475519 GCCATCAAAACCATGACGTACG 60.476 50.000 15.01 15.01 30.82 3.67
2581 2922 1.735018 CGCCATCAAAACCATGACGTA 59.265 47.619 0.00 0.00 30.82 3.57
2662 3009 3.752412 CATATGGCATATGCTTCCGTG 57.248 47.619 28.89 14.81 41.70 4.94
2686 3033 1.675714 CCGGTCAAAGCTGCAGACATA 60.676 52.381 20.43 0.00 34.04 2.29
2696 3043 2.394563 GCAGCTCTCCGGTCAAAGC 61.395 63.158 0.00 6.68 34.95 3.51
2858 3213 3.498397 TCAGAAACGGAGCAATGAAAGAC 59.502 43.478 0.00 0.00 0.00 3.01
2865 3220 5.712152 AGAAAAATCAGAAACGGAGCAAT 57.288 34.783 0.00 0.00 0.00 3.56
2873 3228 5.938322 TGGACGCATAGAAAAATCAGAAAC 58.062 37.500 0.00 0.00 0.00 2.78
2884 3239 2.499693 TCCTTGACATGGACGCATAGAA 59.500 45.455 5.98 0.00 0.00 2.10
2930 3286 4.778579 AGTGATGATCCAACTTGATGAGG 58.221 43.478 0.00 0.00 0.00 3.86
3087 3445 3.256960 AATGGTCCAGGGCCACGT 61.257 61.111 17.59 2.98 39.03 4.49
3144 3502 9.407380 TGGCATAGTTGACAAATTAATCATAGT 57.593 29.630 0.00 0.00 38.16 2.12
3147 3505 8.077991 CGATGGCATAGTTGACAAATTAATCAT 58.922 33.333 0.00 0.00 46.21 2.45
3148 3506 7.281999 TCGATGGCATAGTTGACAAATTAATCA 59.718 33.333 0.00 0.00 46.21 2.57
3149 3507 7.639039 TCGATGGCATAGTTGACAAATTAATC 58.361 34.615 0.00 0.00 46.21 1.75
3150 3508 7.566760 TCGATGGCATAGTTGACAAATTAAT 57.433 32.000 0.00 0.00 46.21 1.40
3151 3509 6.993786 TCGATGGCATAGTTGACAAATTAA 57.006 33.333 0.00 0.00 46.21 1.40
3152 3510 6.993786 TTCGATGGCATAGTTGACAAATTA 57.006 33.333 0.00 0.00 46.21 1.40
3153 3511 5.895636 TTCGATGGCATAGTTGACAAATT 57.104 34.783 0.00 0.00 46.21 1.82
3172 3530 3.198409 TGGGATCACCATCAAGATTCG 57.802 47.619 0.00 0.00 46.80 3.34
3189 3547 1.750778 CGGAAAATGAACCTGGATGGG 59.249 52.381 0.00 0.00 41.11 4.00
3226 3584 4.690748 TCATTTAGCTTCTTGTGACCTTCG 59.309 41.667 0.00 0.00 0.00 3.79
3233 3591 9.844790 TGTATGATTTTCATTTAGCTTCTTGTG 57.155 29.630 0.00 0.00 38.26 3.33
3242 3600 8.737168 TCTCCACCTGTATGATTTTCATTTAG 57.263 34.615 0.00 0.00 38.26 1.85
3274 3632 2.851263 TCGTCCAATAACCAAGCTGT 57.149 45.000 0.00 0.00 0.00 4.40
3299 3657 1.155424 TCACAAGTTGGTTCGCGGTC 61.155 55.000 6.13 0.00 0.00 4.79
3302 3660 1.262950 TCAATCACAAGTTGGTTCGCG 59.737 47.619 7.96 0.00 0.00 5.87
3308 3667 9.831737 CTTTCTAACTATTCAATCACAAGTTGG 57.168 33.333 7.96 0.00 32.85 3.77
3322 3681 9.440761 AGGGATATCACTGTCTTTCTAACTATT 57.559 33.333 6.71 0.00 0.00 1.73
3325 3684 7.181125 ACAAGGGATATCACTGTCTTTCTAACT 59.819 37.037 8.62 0.00 0.00 2.24
3328 3687 6.098409 GGACAAGGGATATCACTGTCTTTCTA 59.902 42.308 24.37 0.00 32.13 2.10
3333 3692 3.452627 GTGGACAAGGGATATCACTGTCT 59.547 47.826 24.37 7.84 32.13 3.41
3334 3693 3.738281 CGTGGACAAGGGATATCACTGTC 60.738 52.174 20.50 20.50 31.31 3.51
3347 3706 1.672356 CTTGAGCCCCGTGGACAAG 60.672 63.158 9.03 9.03 39.39 3.16
3348 3707 2.391724 GACTTGAGCCCCGTGGACAA 62.392 60.000 0.00 0.00 0.00 3.18
3350 3709 2.047179 GACTTGAGCCCCGTGGAC 60.047 66.667 0.00 0.00 0.00 4.02
3355 3714 0.036010 AGTTCATGACTTGAGCCCCG 60.036 55.000 0.00 0.00 36.29 5.73
3356 3715 2.206576 AAGTTCATGACTTGAGCCCC 57.793 50.000 0.00 0.00 46.66 5.80
3365 3724 5.503031 CGAGCACCAATATCAAGTTCATGAC 60.503 44.000 0.00 0.00 30.82 3.06
3370 3729 2.677836 TGCGAGCACCAATATCAAGTTC 59.322 45.455 0.00 0.00 0.00 3.01
3373 3732 3.976793 AATGCGAGCACCAATATCAAG 57.023 42.857 0.00 0.00 0.00 3.02
3378 3737 3.119531 CCAAGAAAATGCGAGCACCAATA 60.120 43.478 0.00 0.00 0.00 1.90
3386 3745 7.253883 GCTGAAATAAATCCAAGAAAATGCGAG 60.254 37.037 0.00 0.00 0.00 5.03
3394 3753 7.013274 CCGGAATAGCTGAAATAAATCCAAGAA 59.987 37.037 0.00 0.00 0.00 2.52
3396 3755 6.672147 CCGGAATAGCTGAAATAAATCCAAG 58.328 40.000 0.00 0.00 0.00 3.61
3399 3758 4.378459 CGCCGGAATAGCTGAAATAAATCC 60.378 45.833 5.05 0.00 0.00 3.01
3405 3764 2.550830 ATCGCCGGAATAGCTGAAAT 57.449 45.000 5.05 0.00 0.00 2.17
3413 3772 1.000052 TGAACGCATATCGCCGGAATA 60.000 47.619 5.05 1.87 43.23 1.75
3421 3780 2.552743 TCCTCCTACTGAACGCATATCG 59.447 50.000 0.00 0.00 45.38 2.92
3423 3782 3.898123 ACATCCTCCTACTGAACGCATAT 59.102 43.478 0.00 0.00 0.00 1.78
3436 3795 1.080498 TCTGGGGTGTTACATCCTCCT 59.920 52.381 14.87 0.00 34.53 3.69
3437 3796 1.580059 TCTGGGGTGTTACATCCTCC 58.420 55.000 14.87 0.00 34.53 4.30
3438 3797 2.505819 ACATCTGGGGTGTTACATCCTC 59.494 50.000 14.87 5.81 34.53 3.71
3439 3798 2.505819 GACATCTGGGGTGTTACATCCT 59.494 50.000 14.87 0.00 34.53 3.24
3440 3799 2.238646 TGACATCTGGGGTGTTACATCC 59.761 50.000 6.01 6.01 33.05 3.51
3441 3800 3.627395 TGACATCTGGGGTGTTACATC 57.373 47.619 0.00 0.00 0.00 3.06
3442 3801 3.873801 GCTTGACATCTGGGGTGTTACAT 60.874 47.826 0.00 0.00 0.00 2.29
3443 3802 2.552155 GCTTGACATCTGGGGTGTTACA 60.552 50.000 0.00 0.00 0.00 2.41
3444 3803 2.084546 GCTTGACATCTGGGGTGTTAC 58.915 52.381 0.00 0.00 0.00 2.50
3445 3804 1.985159 AGCTTGACATCTGGGGTGTTA 59.015 47.619 0.00 0.00 0.00 2.41
3446 3805 0.773644 AGCTTGACATCTGGGGTGTT 59.226 50.000 0.00 0.00 0.00 3.32
3447 3806 1.279271 GTAGCTTGACATCTGGGGTGT 59.721 52.381 0.00 0.00 0.00 4.16
3448 3807 1.278985 TGTAGCTTGACATCTGGGGTG 59.721 52.381 0.00 0.00 0.00 4.61
3449 3808 1.556911 CTGTAGCTTGACATCTGGGGT 59.443 52.381 0.00 0.00 0.00 4.95
3450 3809 1.556911 ACTGTAGCTTGACATCTGGGG 59.443 52.381 0.00 0.00 0.00 4.96
3451 3810 2.234661 TCACTGTAGCTTGACATCTGGG 59.765 50.000 0.00 0.00 0.00 4.45
3452 3811 3.599730 TCACTGTAGCTTGACATCTGG 57.400 47.619 0.00 0.00 0.00 3.86
3453 3812 5.008619 AGATCACTGTAGCTTGACATCTG 57.991 43.478 0.00 0.00 0.00 2.90
3454 3813 4.708909 TGAGATCACTGTAGCTTGACATCT 59.291 41.667 0.00 0.00 0.00 2.90
3455 3814 4.803088 GTGAGATCACTGTAGCTTGACATC 59.197 45.833 5.72 0.00 43.25 3.06
3456 3815 4.221482 TGTGAGATCACTGTAGCTTGACAT 59.779 41.667 13.74 0.00 46.55 3.06
3457 3816 3.573967 TGTGAGATCACTGTAGCTTGACA 59.426 43.478 13.74 0.00 46.55 3.58
3458 3817 3.923461 GTGTGAGATCACTGTAGCTTGAC 59.077 47.826 13.74 0.00 46.55 3.18
3459 3818 3.829026 AGTGTGAGATCACTGTAGCTTGA 59.171 43.478 13.74 0.00 45.40 3.02
3460 3819 4.185467 AGTGTGAGATCACTGTAGCTTG 57.815 45.455 13.74 0.00 45.40 4.01
3461 3820 5.984695 TTAGTGTGAGATCACTGTAGCTT 57.015 39.130 13.74 0.00 46.36 3.74
3462 3821 6.537453 AATTAGTGTGAGATCACTGTAGCT 57.463 37.500 13.74 0.00 46.36 3.32
3463 3822 7.095857 GCATAATTAGTGTGAGATCACTGTAGC 60.096 40.741 13.74 3.22 46.36 3.58
3464 3823 7.383572 GGCATAATTAGTGTGAGATCACTGTAG 59.616 40.741 13.74 0.00 46.36 2.74
3465 3824 7.147742 TGGCATAATTAGTGTGAGATCACTGTA 60.148 37.037 13.74 3.26 46.36 2.74
3466 3825 6.051717 GGCATAATTAGTGTGAGATCACTGT 58.948 40.000 13.74 4.14 46.36 3.55
3467 3826 6.051074 TGGCATAATTAGTGTGAGATCACTG 58.949 40.000 13.74 3.00 46.36 3.66
3469 3828 6.540189 ACTTGGCATAATTAGTGTGAGATCAC 59.460 38.462 6.01 6.01 46.59 3.06
3470 3829 6.653020 ACTTGGCATAATTAGTGTGAGATCA 58.347 36.000 0.00 0.00 0.00 2.92
3471 3830 6.763135 TGACTTGGCATAATTAGTGTGAGATC 59.237 38.462 0.00 0.00 0.00 2.75
3472 3831 6.653020 TGACTTGGCATAATTAGTGTGAGAT 58.347 36.000 0.00 0.00 0.00 2.75
3473 3832 6.048732 TGACTTGGCATAATTAGTGTGAGA 57.951 37.500 0.00 0.00 0.00 3.27
3474 3833 6.539826 TGATGACTTGGCATAATTAGTGTGAG 59.460 38.462 0.00 0.00 0.00 3.51
3475 3834 6.413892 TGATGACTTGGCATAATTAGTGTGA 58.586 36.000 0.00 0.00 0.00 3.58
3476 3835 6.682423 TGATGACTTGGCATAATTAGTGTG 57.318 37.500 0.00 0.00 0.00 3.82
3477 3836 9.224267 GATATGATGACTTGGCATAATTAGTGT 57.776 33.333 0.00 0.00 0.00 3.55
3478 3837 9.223099 TGATATGATGACTTGGCATAATTAGTG 57.777 33.333 0.00 0.00 0.00 2.74
3479 3838 9.797642 TTGATATGATGACTTGGCATAATTAGT 57.202 29.630 0.00 0.00 0.00 2.24
3481 3840 8.733458 GCTTGATATGATGACTTGGCATAATTA 58.267 33.333 0.00 0.00 0.00 1.40
3482 3841 7.309621 GGCTTGATATGATGACTTGGCATAATT 60.310 37.037 0.00 0.00 0.00 1.40
3483 3842 6.152323 GGCTTGATATGATGACTTGGCATAAT 59.848 38.462 0.00 0.00 0.00 1.28
3484 3843 5.474532 GGCTTGATATGATGACTTGGCATAA 59.525 40.000 0.00 0.00 0.00 1.90
3485 3844 5.005740 GGCTTGATATGATGACTTGGCATA 58.994 41.667 0.00 0.00 0.00 3.14
3486 3845 3.825014 GGCTTGATATGATGACTTGGCAT 59.175 43.478 0.00 0.00 0.00 4.40
3487 3846 3.216800 GGCTTGATATGATGACTTGGCA 58.783 45.455 0.00 0.00 0.00 4.92
3488 3847 3.216800 TGGCTTGATATGATGACTTGGC 58.783 45.455 0.00 0.00 0.00 4.52
3489 3848 4.885907 ACTTGGCTTGATATGATGACTTGG 59.114 41.667 0.00 0.00 0.00 3.61
3490 3849 5.587443 TGACTTGGCTTGATATGATGACTTG 59.413 40.000 0.00 0.00 0.00 3.16
3491 3850 5.748402 TGACTTGGCTTGATATGATGACTT 58.252 37.500 0.00 0.00 0.00 3.01
3492 3851 5.363562 TGACTTGGCTTGATATGATGACT 57.636 39.130 0.00 0.00 0.00 3.41
3493 3852 6.630444 AATGACTTGGCTTGATATGATGAC 57.370 37.500 0.00 0.00 0.00 3.06
3494 3853 6.460537 GCAAATGACTTGGCTTGATATGATGA 60.461 38.462 0.00 0.00 35.38 2.92
3495 3854 5.690409 GCAAATGACTTGGCTTGATATGATG 59.310 40.000 0.00 0.00 35.38 3.07
3496 3855 5.839621 GCAAATGACTTGGCTTGATATGAT 58.160 37.500 0.00 0.00 35.38 2.45
3497 3856 5.252969 GCAAATGACTTGGCTTGATATGA 57.747 39.130 0.00 0.00 35.38 2.15
3509 3868 4.734398 TCAAACAAGTGGCAAATGACTT 57.266 36.364 7.68 0.00 32.48 3.01
3510 3869 4.734398 TTCAAACAAGTGGCAAATGACT 57.266 36.364 7.68 0.00 0.00 3.41
3511 3870 5.989551 ATTTCAAACAAGTGGCAAATGAC 57.010 34.783 7.68 0.00 0.00 3.06
3512 3871 8.674263 ATTAATTTCAAACAAGTGGCAAATGA 57.326 26.923 7.68 0.00 0.00 2.57
3517 3876 9.364989 GCTATAATTAATTTCAAACAAGTGGCA 57.635 29.630 5.91 0.00 0.00 4.92
3518 3877 9.586435 AGCTATAATTAATTTCAAACAAGTGGC 57.414 29.630 5.91 0.00 0.00 5.01
3524 3883 9.086336 GCTTGCAGCTATAATTAATTTCAAACA 57.914 29.630 5.91 0.00 38.45 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.