Multiple sequence alignment - TraesCS2A01G460100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G460100 chr2A 100.000 3974 0 0 1 3974 706757778 706761751 0.000000e+00 7339.0
1 TraesCS2A01G460100 chr2A 88.660 388 25 3 98 484 751527627 751527258 4.680000e-124 455.0
2 TraesCS2A01G460100 chr2A 85.479 365 47 5 121 483 84611234 84610874 3.750000e-100 375.0
3 TraesCS2A01G460100 chr2A 94.262 122 7 0 363 484 543307096 543307217 1.890000e-43 187.0
4 TraesCS2A01G460100 chr2A 81.967 122 19 3 2325 2446 744283950 744284068 2.530000e-17 100.0
5 TraesCS2A01G460100 chr2A 94.000 50 3 0 3786 3835 410338275 410338324 4.260000e-10 76.8
6 TraesCS2A01G460100 chr2D 92.581 3410 159 28 600 3974 566993361 566996711 0.000000e+00 4809.0
7 TraesCS2A01G460100 chr2D 98.795 83 1 0 608 690 643312391 643312473 8.900000e-32 148.0
8 TraesCS2A01G460100 chr2D 100.000 31 0 0 2960 2990 566995738 566995768 1.540000e-04 58.4
9 TraesCS2A01G460100 chr2B 93.424 1840 98 15 592 2422 679903282 679905107 0.000000e+00 2706.0
10 TraesCS2A01G460100 chr2B 92.232 1017 44 14 2985 3974 679906462 679907470 0.000000e+00 1408.0
11 TraesCS2A01G460100 chr2B 91.697 542 29 4 2420 2961 679905939 679906464 0.000000e+00 737.0
12 TraesCS2A01G460100 chr2B 96.739 92 1 2 608 699 793534790 793534701 6.880000e-33 152.0
13 TraesCS2A01G460100 chr2B 100.000 31 0 0 2960 2990 679906478 679906508 1.540000e-04 58.4
14 TraesCS2A01G460100 chr5A 93.540 387 25 0 98 484 42098590 42098204 9.580000e-161 577.0
15 TraesCS2A01G460100 chr5A 92.564 390 29 0 93 482 138171508 138171119 9.640000e-156 560.0
16 TraesCS2A01G460100 chr7A 92.765 387 28 0 98 484 48481983 48481597 9.640000e-156 560.0
17 TraesCS2A01G460100 chr7A 92.487 386 27 1 98 483 637981120 637981503 5.800000e-153 551.0
18 TraesCS2A01G460100 chr7A 86.029 136 18 1 2316 2451 43516433 43516567 1.150000e-30 145.0
19 TraesCS2A01G460100 chr6A 92.152 395 29 2 93 486 428691159 428691552 1.250000e-154 556.0
20 TraesCS2A01G460100 chr6A 92.072 391 30 1 93 483 597943879 597944268 2.090000e-152 549.0
21 TraesCS2A01G460100 chr6A 91.864 295 24 0 98 392 97030908 97031202 2.860000e-111 412.0
22 TraesCS2A01G460100 chr4A 87.681 138 16 1 2316 2453 652194544 652194680 4.110000e-35 159.0
23 TraesCS2A01G460100 chr3D 98.810 84 1 0 609 692 418398131 418398214 2.470000e-32 150.0
24 TraesCS2A01G460100 chr3D 79.562 137 23 5 2316 2451 330277141 330277009 4.230000e-15 93.5
25 TraesCS2A01G460100 chr5D 98.780 82 1 0 609 690 449271489 449271570 3.200000e-31 147.0
26 TraesCS2A01G460100 chr3B 98.780 82 1 0 609 690 544794496 544794577 3.200000e-31 147.0
27 TraesCS2A01G460100 chr5B 89.655 116 8 4 605 717 548735803 548735689 1.150000e-30 145.0
28 TraesCS2A01G460100 chr5B 97.619 84 1 1 608 690 548728904 548728821 4.140000e-30 143.0
29 TraesCS2A01G460100 chr1A 94.000 50 3 0 3786 3835 542956969 542957018 4.260000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G460100 chr2A 706757778 706761751 3973 False 7339.00 7339 100.00000 1 3974 1 chr2A.!!$F3 3973
1 TraesCS2A01G460100 chr2D 566993361 566996711 3350 False 2433.70 4809 96.29050 600 3974 2 chr2D.!!$F2 3374
2 TraesCS2A01G460100 chr2B 679903282 679907470 4188 False 1227.35 2706 94.33825 592 3974 4 chr2B.!!$F1 3382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 361 0.036164 TAGCCATGAACTTGCCGTGT 59.964 50.0 0.00 0.0 0.00 4.49 F
361 362 0.036164 AGCCATGAACTTGCCGTGTA 59.964 50.0 0.00 0.0 0.00 2.90 F
441 442 0.172803 CTTGGCATTGGCTGAGAAGC 59.827 55.0 11.84 0.0 40.87 3.86 F
1915 1926 0.175989 GGAGGCGAAGGACCTAGTTG 59.824 60.0 0.00 0.0 37.77 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 2127 1.071699 TCAGGTCCACTAAACCACTGC 59.928 52.381 0.00 0.00 39.39 4.40 R
2168 2179 1.610886 GGTTGGTCCACTAGTTCCAGC 60.611 57.143 13.29 13.29 35.97 4.85 R
2370 2381 0.604073 TTCCCTGTGCATCGAACGTA 59.396 50.000 0.00 0.00 0.00 3.57 R
3603 4472 0.322816 TGGGCATCTCAAGCAACTCC 60.323 55.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.850557 TGCCACATAATTTGGTTCCATAG 57.149 39.130 0.00 0.00 36.40 2.23
23 24 5.268387 TGCCACATAATTTGGTTCCATAGT 58.732 37.500 0.00 0.00 36.40 2.12
24 25 5.719085 TGCCACATAATTTGGTTCCATAGTT 59.281 36.000 0.00 0.00 36.40 2.24
25 26 6.212388 TGCCACATAATTTGGTTCCATAGTTT 59.788 34.615 0.00 0.00 36.40 2.66
26 27 7.102993 GCCACATAATTTGGTTCCATAGTTTT 58.897 34.615 0.00 0.00 36.40 2.43
27 28 7.064490 GCCACATAATTTGGTTCCATAGTTTTG 59.936 37.037 0.00 0.00 36.40 2.44
28 29 8.093927 CCACATAATTTGGTTCCATAGTTTTGT 58.906 33.333 0.00 0.00 0.00 2.83
33 34 6.394025 TTTGGTTCCATAGTTTTGTACACC 57.606 37.500 0.00 0.00 0.00 4.16
34 35 4.400120 TGGTTCCATAGTTTTGTACACCC 58.600 43.478 0.00 0.00 0.00 4.61
35 36 4.105057 TGGTTCCATAGTTTTGTACACCCT 59.895 41.667 0.00 0.00 0.00 4.34
36 37 5.074804 GGTTCCATAGTTTTGTACACCCTT 58.925 41.667 0.00 0.00 0.00 3.95
37 38 5.182570 GGTTCCATAGTTTTGTACACCCTTC 59.817 44.000 0.00 0.00 0.00 3.46
38 39 5.570205 TCCATAGTTTTGTACACCCTTCA 57.430 39.130 0.00 0.00 0.00 3.02
39 40 5.556915 TCCATAGTTTTGTACACCCTTCAG 58.443 41.667 0.00 0.00 0.00 3.02
40 41 5.308497 TCCATAGTTTTGTACACCCTTCAGA 59.692 40.000 0.00 0.00 0.00 3.27
41 42 6.001460 CCATAGTTTTGTACACCCTTCAGAA 58.999 40.000 0.00 0.00 0.00 3.02
42 43 6.659242 CCATAGTTTTGTACACCCTTCAGAAT 59.341 38.462 0.00 0.00 0.00 2.40
43 44 7.176690 CCATAGTTTTGTACACCCTTCAGAATT 59.823 37.037 0.00 0.00 0.00 2.17
44 45 6.391227 AGTTTTGTACACCCTTCAGAATTG 57.609 37.500 0.00 0.00 0.00 2.32
45 46 5.891551 AGTTTTGTACACCCTTCAGAATTGT 59.108 36.000 0.00 0.00 0.00 2.71
46 47 6.039382 AGTTTTGTACACCCTTCAGAATTGTC 59.961 38.462 0.00 0.00 0.00 3.18
47 48 4.015872 TGTACACCCTTCAGAATTGTCC 57.984 45.455 0.00 0.00 0.00 4.02
48 49 3.392947 TGTACACCCTTCAGAATTGTCCA 59.607 43.478 0.00 0.00 0.00 4.02
49 50 3.814504 ACACCCTTCAGAATTGTCCAT 57.185 42.857 0.00 0.00 0.00 3.41
50 51 3.424703 ACACCCTTCAGAATTGTCCATG 58.575 45.455 0.00 0.00 0.00 3.66
51 52 3.181429 ACACCCTTCAGAATTGTCCATGT 60.181 43.478 0.00 0.00 0.00 3.21
52 53 3.441572 CACCCTTCAGAATTGTCCATGTC 59.558 47.826 0.00 0.00 0.00 3.06
53 54 3.331889 ACCCTTCAGAATTGTCCATGTCT 59.668 43.478 0.00 0.00 0.00 3.41
54 55 4.202609 ACCCTTCAGAATTGTCCATGTCTT 60.203 41.667 0.00 0.00 0.00 3.01
55 56 5.014123 ACCCTTCAGAATTGTCCATGTCTTA 59.986 40.000 0.00 0.00 0.00 2.10
56 57 5.945784 CCCTTCAGAATTGTCCATGTCTTAA 59.054 40.000 0.00 0.00 0.00 1.85
57 58 6.604795 CCCTTCAGAATTGTCCATGTCTTAAT 59.395 38.462 0.00 0.00 0.00 1.40
58 59 7.201767 CCCTTCAGAATTGTCCATGTCTTAATC 60.202 40.741 0.00 0.00 0.00 1.75
59 60 7.555554 CCTTCAGAATTGTCCATGTCTTAATCT 59.444 37.037 0.00 0.00 0.00 2.40
60 61 8.868522 TTCAGAATTGTCCATGTCTTAATCTT 57.131 30.769 0.00 0.00 0.00 2.40
61 62 9.958180 TTCAGAATTGTCCATGTCTTAATCTTA 57.042 29.630 0.00 0.00 0.00 2.10
62 63 9.958180 TCAGAATTGTCCATGTCTTAATCTTAA 57.042 29.630 0.00 0.00 0.00 1.85
63 64 9.994432 CAGAATTGTCCATGTCTTAATCTTAAC 57.006 33.333 0.00 0.00 0.00 2.01
64 65 9.965902 AGAATTGTCCATGTCTTAATCTTAACT 57.034 29.630 0.00 0.00 0.00 2.24
65 66 9.994432 GAATTGTCCATGTCTTAATCTTAACTG 57.006 33.333 0.00 0.00 0.00 3.16
66 67 9.520515 AATTGTCCATGTCTTAATCTTAACTGT 57.479 29.630 0.00 0.00 0.00 3.55
67 68 8.918202 TTGTCCATGTCTTAATCTTAACTGTT 57.082 30.769 0.00 0.00 0.00 3.16
68 69 8.918202 TGTCCATGTCTTAATCTTAACTGTTT 57.082 30.769 0.00 0.00 0.00 2.83
69 70 9.349713 TGTCCATGTCTTAATCTTAACTGTTTT 57.650 29.630 0.00 0.00 0.00 2.43
98 99 9.822185 AGCTTTCTTAATTCTCAAACAATTTGT 57.178 25.926 0.00 0.00 41.36 2.83
112 113 9.497030 TCAAACAATTTGTATATGTGATAACGC 57.503 29.630 1.76 0.00 41.36 4.84
113 114 8.460629 CAAACAATTTGTATATGTGATAACGCG 58.539 33.333 3.53 3.53 35.94 6.01
114 115 7.241663 ACAATTTGTATATGTGATAACGCGT 57.758 32.000 5.58 5.58 0.00 6.01
115 116 7.690228 ACAATTTGTATATGTGATAACGCGTT 58.310 30.769 29.27 29.27 0.00 4.84
116 117 7.638295 ACAATTTGTATATGTGATAACGCGTTG 59.362 33.333 33.40 13.58 0.00 4.10
117 118 5.644902 TTGTATATGTGATAACGCGTTGG 57.355 39.130 33.40 0.00 0.00 3.77
118 119 4.934515 TGTATATGTGATAACGCGTTGGA 58.065 39.130 33.40 16.15 0.00 3.53
119 120 4.741185 TGTATATGTGATAACGCGTTGGAC 59.259 41.667 33.40 24.34 0.00 4.02
120 121 0.996462 ATGTGATAACGCGTTGGACG 59.004 50.000 33.40 0.00 45.88 4.79
129 130 2.579787 CGTTGGACGCCGAGCTAG 60.580 66.667 0.00 0.00 33.65 3.42
130 131 2.886124 GTTGGACGCCGAGCTAGC 60.886 66.667 6.62 6.62 0.00 3.42
143 144 4.554363 CTAGCGGCGTGTCGGGAG 62.554 72.222 9.37 0.00 0.00 4.30
167 168 3.474570 GAGCTGGCCCTCCATCGT 61.475 66.667 0.00 0.00 42.51 3.73
168 169 2.041922 AGCTGGCCCTCCATCGTA 60.042 61.111 0.00 0.00 42.51 3.43
169 170 2.109181 GCTGGCCCTCCATCGTAC 59.891 66.667 0.00 0.00 42.51 3.67
170 171 2.417516 CTGGCCCTCCATCGTACG 59.582 66.667 9.53 9.53 42.51 3.67
171 172 3.151710 TGGCCCTCCATCGTACGG 61.152 66.667 16.52 0.00 37.47 4.02
172 173 3.152400 GGCCCTCCATCGTACGGT 61.152 66.667 16.52 4.91 0.00 4.83
173 174 2.106332 GCCCTCCATCGTACGGTG 59.894 66.667 21.63 21.63 0.00 4.94
174 175 2.106332 CCCTCCATCGTACGGTGC 59.894 66.667 23.08 0.00 0.00 5.01
175 176 2.423898 CCCTCCATCGTACGGTGCT 61.424 63.158 23.08 0.00 0.00 4.40
176 177 1.226974 CCTCCATCGTACGGTGCTG 60.227 63.158 23.08 15.98 0.00 4.41
177 178 1.878522 CTCCATCGTACGGTGCTGC 60.879 63.158 23.08 0.00 0.00 5.25
178 179 2.890474 CCATCGTACGGTGCTGCC 60.890 66.667 23.08 0.00 0.00 4.85
179 180 2.890474 CATCGTACGGTGCTGCCC 60.890 66.667 16.71 0.00 0.00 5.36
180 181 3.387091 ATCGTACGGTGCTGCCCA 61.387 61.111 16.52 0.00 0.00 5.36
181 182 2.731571 ATCGTACGGTGCTGCCCAT 61.732 57.895 16.52 0.00 0.00 4.00
182 183 2.252072 ATCGTACGGTGCTGCCCATT 62.252 55.000 16.52 0.00 0.00 3.16
183 184 2.038269 CGTACGGTGCTGCCCATTT 61.038 57.895 7.57 0.00 0.00 2.32
184 185 1.582610 CGTACGGTGCTGCCCATTTT 61.583 55.000 7.57 0.00 0.00 1.82
185 186 0.109319 GTACGGTGCTGCCCATTTTG 60.109 55.000 0.00 0.00 0.00 2.44
186 187 1.247419 TACGGTGCTGCCCATTTTGG 61.247 55.000 0.00 0.00 37.25 3.28
193 194 3.070576 GCCCATTTTGGCCGAGCT 61.071 61.111 0.00 0.00 46.11 4.09
194 195 2.649129 GCCCATTTTGGCCGAGCTT 61.649 57.895 0.00 0.00 46.11 3.74
195 196 1.216178 CCCATTTTGGCCGAGCTTG 59.784 57.895 0.00 0.00 35.79 4.01
196 197 1.250154 CCCATTTTGGCCGAGCTTGA 61.250 55.000 1.22 0.00 35.79 3.02
197 198 0.819582 CCATTTTGGCCGAGCTTGAT 59.180 50.000 1.22 0.00 0.00 2.57
198 199 2.023673 CCATTTTGGCCGAGCTTGATA 58.976 47.619 1.22 0.00 0.00 2.15
199 200 2.033801 CCATTTTGGCCGAGCTTGATAG 59.966 50.000 1.22 0.00 0.00 2.08
208 209 3.341835 GCTTGATAGCGCGGAGGC 61.342 66.667 8.83 0.00 37.71 4.70
219 220 3.680786 CGGAGGCGGTGTCACTGA 61.681 66.667 16.28 0.00 0.00 3.41
220 221 2.982130 GGAGGCGGTGTCACTGAT 59.018 61.111 16.28 2.80 0.00 2.90
221 222 1.153549 GGAGGCGGTGTCACTGATC 60.154 63.158 16.28 11.64 0.00 2.92
222 223 1.591703 GAGGCGGTGTCACTGATCA 59.408 57.895 16.28 0.00 0.00 2.92
223 224 0.176680 GAGGCGGTGTCACTGATCAT 59.823 55.000 16.28 0.00 0.00 2.45
224 225 1.409064 GAGGCGGTGTCACTGATCATA 59.591 52.381 16.28 0.00 0.00 2.15
225 226 1.410517 AGGCGGTGTCACTGATCATAG 59.589 52.381 16.28 0.00 0.00 2.23
226 227 1.212616 GCGGTGTCACTGATCATAGC 58.787 55.000 16.28 0.00 0.00 2.97
227 228 1.471501 GCGGTGTCACTGATCATAGCA 60.472 52.381 16.28 0.00 0.00 3.49
228 229 2.196749 CGGTGTCACTGATCATAGCAC 58.803 52.381 5.84 3.76 0.00 4.40
229 230 2.417243 CGGTGTCACTGATCATAGCACA 60.417 50.000 5.84 7.24 0.00 4.57
230 231 2.932614 GGTGTCACTGATCATAGCACAC 59.067 50.000 14.52 14.52 35.54 3.82
231 232 3.368843 GGTGTCACTGATCATAGCACACT 60.369 47.826 19.01 0.00 36.10 3.55
232 233 3.862267 GTGTCACTGATCATAGCACACTC 59.138 47.826 15.16 0.00 34.40 3.51
233 234 3.118992 TGTCACTGATCATAGCACACTCC 60.119 47.826 0.00 0.00 0.00 3.85
234 235 2.099756 TCACTGATCATAGCACACTCCG 59.900 50.000 0.00 0.00 0.00 4.63
235 236 2.099756 CACTGATCATAGCACACTCCGA 59.900 50.000 0.00 0.00 0.00 4.55
236 237 2.961741 ACTGATCATAGCACACTCCGAT 59.038 45.455 0.00 0.00 0.00 4.18
237 238 3.243670 ACTGATCATAGCACACTCCGATG 60.244 47.826 0.00 0.00 0.00 3.84
238 239 2.958355 TGATCATAGCACACTCCGATGA 59.042 45.455 0.00 0.00 0.00 2.92
239 240 3.575687 TGATCATAGCACACTCCGATGAT 59.424 43.478 0.00 0.00 39.39 2.45
240 241 3.650070 TCATAGCACACTCCGATGATC 57.350 47.619 0.00 0.00 0.00 2.92
241 242 2.030805 TCATAGCACACTCCGATGATCG 60.031 50.000 8.05 8.05 40.07 3.69
242 243 1.675552 TAGCACACTCCGATGATCGA 58.324 50.000 17.52 1.63 43.74 3.59
243 244 1.035923 AGCACACTCCGATGATCGAT 58.964 50.000 17.52 0.00 43.74 3.59
244 245 1.000827 AGCACACTCCGATGATCGATC 60.001 52.381 17.52 18.72 43.74 3.69
265 266 4.787381 CGATACATCGCATGTTGGTTAA 57.213 40.909 7.02 0.00 41.63 2.01
266 267 4.761745 CGATACATCGCATGTTGGTTAAG 58.238 43.478 7.02 0.00 41.63 1.85
267 268 4.318760 CGATACATCGCATGTTGGTTAAGG 60.319 45.833 7.02 0.00 41.63 2.69
268 269 3.066291 ACATCGCATGTTGGTTAAGGA 57.934 42.857 0.00 0.00 41.63 3.36
269 270 3.009723 ACATCGCATGTTGGTTAAGGAG 58.990 45.455 0.00 0.00 41.63 3.69
270 271 3.270027 CATCGCATGTTGGTTAAGGAGA 58.730 45.455 0.00 0.00 0.00 3.71
271 272 3.627395 TCGCATGTTGGTTAAGGAGAT 57.373 42.857 0.00 0.00 0.00 2.75
272 273 3.950397 TCGCATGTTGGTTAAGGAGATT 58.050 40.909 0.00 0.00 0.00 2.40
273 274 5.092554 TCGCATGTTGGTTAAGGAGATTA 57.907 39.130 0.00 0.00 0.00 1.75
274 275 5.492895 TCGCATGTTGGTTAAGGAGATTAA 58.507 37.500 0.00 0.00 0.00 1.40
275 276 5.584649 TCGCATGTTGGTTAAGGAGATTAAG 59.415 40.000 0.00 0.00 34.01 1.85
276 277 5.584649 CGCATGTTGGTTAAGGAGATTAAGA 59.415 40.000 0.00 0.00 34.01 2.10
277 278 6.093495 CGCATGTTGGTTAAGGAGATTAAGAA 59.907 38.462 0.00 0.00 34.01 2.52
278 279 7.201732 CGCATGTTGGTTAAGGAGATTAAGAAT 60.202 37.037 0.00 0.00 34.01 2.40
279 280 8.131731 GCATGTTGGTTAAGGAGATTAAGAATC 58.868 37.037 0.00 0.00 34.01 2.52
280 281 8.624776 CATGTTGGTTAAGGAGATTAAGAATCC 58.375 37.037 0.00 0.00 38.71 3.01
281 282 6.821665 TGTTGGTTAAGGAGATTAAGAATCCG 59.178 38.462 0.00 0.00 38.71 4.18
282 283 6.801718 TGGTTAAGGAGATTAAGAATCCGA 57.198 37.500 0.00 0.00 38.71 4.55
283 284 6.579865 TGGTTAAGGAGATTAAGAATCCGAC 58.420 40.000 0.00 0.00 38.71 4.79
284 285 5.990386 GGTTAAGGAGATTAAGAATCCGACC 59.010 44.000 0.00 9.03 38.71 4.79
285 286 6.183360 GGTTAAGGAGATTAAGAATCCGACCT 60.183 42.308 13.38 0.00 38.71 3.85
286 287 5.538849 AAGGAGATTAAGAATCCGACCTC 57.461 43.478 9.19 0.00 38.71 3.85
287 288 4.547671 AGGAGATTAAGAATCCGACCTCA 58.452 43.478 0.00 0.00 38.71 3.86
288 289 4.962995 AGGAGATTAAGAATCCGACCTCAA 59.037 41.667 0.00 0.00 38.71 3.02
289 290 5.051153 GGAGATTAAGAATCCGACCTCAAC 58.949 45.833 0.00 0.00 38.71 3.18
290 291 5.163395 GGAGATTAAGAATCCGACCTCAACT 60.163 44.000 0.00 0.00 38.71 3.16
291 292 5.665459 AGATTAAGAATCCGACCTCAACTG 58.335 41.667 0.00 0.00 38.71 3.16
292 293 5.422331 AGATTAAGAATCCGACCTCAACTGA 59.578 40.000 0.00 0.00 38.71 3.41
293 294 3.601443 AAGAATCCGACCTCAACTGAG 57.399 47.619 0.00 0.00 41.71 3.35
295 296 9.246279 GATTAAGAATCCGACCTCAACTGAGGA 62.246 44.444 28.57 9.90 46.24 3.71
306 307 5.885449 CTCAACTGAGGATAGGGAGATTT 57.115 43.478 0.00 0.00 38.48 2.17
307 308 5.852827 CTCAACTGAGGATAGGGAGATTTC 58.147 45.833 0.00 0.00 38.48 2.17
308 309 5.533112 TCAACTGAGGATAGGGAGATTTCT 58.467 41.667 0.00 0.00 0.00 2.52
309 310 5.966935 TCAACTGAGGATAGGGAGATTTCTT 59.033 40.000 0.00 0.00 0.00 2.52
310 311 6.445139 TCAACTGAGGATAGGGAGATTTCTTT 59.555 38.462 0.00 0.00 0.00 2.52
311 312 6.899892 ACTGAGGATAGGGAGATTTCTTTT 57.100 37.500 0.00 0.00 0.00 2.27
312 313 7.996758 ACTGAGGATAGGGAGATTTCTTTTA 57.003 36.000 0.00 0.00 0.00 1.52
313 314 7.797062 ACTGAGGATAGGGAGATTTCTTTTAC 58.203 38.462 0.00 0.00 0.00 2.01
314 315 7.625682 ACTGAGGATAGGGAGATTTCTTTTACT 59.374 37.037 0.00 0.00 0.00 2.24
315 316 8.024145 TGAGGATAGGGAGATTTCTTTTACTC 57.976 38.462 0.00 0.00 0.00 2.59
316 317 7.056844 AGGATAGGGAGATTTCTTTTACTCG 57.943 40.000 0.00 0.00 0.00 4.18
317 318 5.697178 GGATAGGGAGATTTCTTTTACTCGC 59.303 44.000 0.00 0.00 40.77 5.03
318 319 4.828072 AGGGAGATTTCTTTTACTCGCT 57.172 40.909 0.00 0.00 43.93 4.93
319 320 4.508662 AGGGAGATTTCTTTTACTCGCTG 58.491 43.478 0.00 0.00 45.81 5.18
320 321 4.020128 AGGGAGATTTCTTTTACTCGCTGT 60.020 41.667 0.00 0.00 45.81 4.40
321 322 4.695928 GGGAGATTTCTTTTACTCGCTGTT 59.304 41.667 0.00 0.00 38.60 3.16
322 323 5.390991 GGGAGATTTCTTTTACTCGCTGTTG 60.391 44.000 0.00 0.00 38.60 3.33
323 324 5.179555 GGAGATTTCTTTTACTCGCTGTTGT 59.820 40.000 0.00 0.00 0.00 3.32
324 325 6.229561 AGATTTCTTTTACTCGCTGTTGTC 57.770 37.500 0.00 0.00 0.00 3.18
325 326 4.446857 TTTCTTTTACTCGCTGTTGTCG 57.553 40.909 0.00 0.00 0.00 4.35
326 327 2.400399 TCTTTTACTCGCTGTTGTCGG 58.600 47.619 0.00 0.00 0.00 4.79
327 328 2.132762 CTTTTACTCGCTGTTGTCGGT 58.867 47.619 0.00 0.00 0.00 4.69
328 329 1.774639 TTTACTCGCTGTTGTCGGTC 58.225 50.000 0.00 0.00 0.00 4.79
329 330 0.669619 TTACTCGCTGTTGTCGGTCA 59.330 50.000 0.00 0.00 0.00 4.02
330 331 0.039798 TACTCGCTGTTGTCGGTCAC 60.040 55.000 0.00 0.00 0.00 3.67
331 332 1.299850 CTCGCTGTTGTCGGTCACA 60.300 57.895 0.00 0.00 0.00 3.58
332 333 0.874175 CTCGCTGTTGTCGGTCACAA 60.874 55.000 0.00 0.00 43.12 3.33
333 334 0.460459 TCGCTGTTGTCGGTCACAAA 60.460 50.000 0.00 0.00 46.90 2.83
334 335 0.375454 CGCTGTTGTCGGTCACAAAA 59.625 50.000 0.00 0.00 46.90 2.44
335 336 1.002900 CGCTGTTGTCGGTCACAAAAT 60.003 47.619 0.00 0.00 46.90 1.82
336 337 2.540769 CGCTGTTGTCGGTCACAAAATT 60.541 45.455 0.00 0.00 46.90 1.82
337 338 3.303461 CGCTGTTGTCGGTCACAAAATTA 60.303 43.478 0.00 0.00 46.90 1.40
338 339 4.602995 GCTGTTGTCGGTCACAAAATTAA 58.397 39.130 0.00 0.00 46.90 1.40
339 340 4.675114 GCTGTTGTCGGTCACAAAATTAAG 59.325 41.667 0.00 0.00 46.90 1.85
340 341 5.732247 GCTGTTGTCGGTCACAAAATTAAGT 60.732 40.000 0.00 0.00 46.90 2.24
341 342 6.197364 TGTTGTCGGTCACAAAATTAAGTT 57.803 33.333 0.00 0.00 46.90 2.66
342 343 7.317842 TGTTGTCGGTCACAAAATTAAGTTA 57.682 32.000 0.00 0.00 46.90 2.24
343 344 7.411274 TGTTGTCGGTCACAAAATTAAGTTAG 58.589 34.615 0.00 0.00 46.90 2.34
344 345 5.992729 TGTCGGTCACAAAATTAAGTTAGC 58.007 37.500 0.00 0.00 29.30 3.09
345 346 5.049267 TGTCGGTCACAAAATTAAGTTAGCC 60.049 40.000 0.00 0.00 29.30 3.93
346 347 5.049267 GTCGGTCACAAAATTAAGTTAGCCA 60.049 40.000 0.00 0.00 0.00 4.75
347 348 5.708230 TCGGTCACAAAATTAAGTTAGCCAT 59.292 36.000 0.00 0.00 0.00 4.40
348 349 5.799936 CGGTCACAAAATTAAGTTAGCCATG 59.200 40.000 0.00 0.00 0.00 3.66
349 350 6.348950 CGGTCACAAAATTAAGTTAGCCATGA 60.349 38.462 0.00 0.00 0.00 3.07
350 351 7.375053 GGTCACAAAATTAAGTTAGCCATGAA 58.625 34.615 0.00 0.00 0.00 2.57
351 352 7.328493 GGTCACAAAATTAAGTTAGCCATGAAC 59.672 37.037 0.00 0.00 0.00 3.18
352 353 8.082242 GTCACAAAATTAAGTTAGCCATGAACT 58.918 33.333 0.00 0.00 38.81 3.01
353 354 8.637986 TCACAAAATTAAGTTAGCCATGAACTT 58.362 29.630 13.63 13.63 46.32 2.66
354 355 8.702438 CACAAAATTAAGTTAGCCATGAACTTG 58.298 33.333 17.05 6.39 44.74 3.16
355 356 7.384932 ACAAAATTAAGTTAGCCATGAACTTGC 59.615 33.333 17.05 2.56 44.74 4.01
356 357 5.582689 ATTAAGTTAGCCATGAACTTGCC 57.417 39.130 17.05 0.00 44.74 4.52
357 358 1.453155 AGTTAGCCATGAACTTGCCG 58.547 50.000 0.00 0.00 33.25 5.69
358 359 1.165270 GTTAGCCATGAACTTGCCGT 58.835 50.000 0.00 0.00 0.00 5.68
359 360 1.135689 GTTAGCCATGAACTTGCCGTG 60.136 52.381 0.00 0.00 0.00 4.94
360 361 0.036164 TAGCCATGAACTTGCCGTGT 59.964 50.000 0.00 0.00 0.00 4.49
361 362 0.036164 AGCCATGAACTTGCCGTGTA 59.964 50.000 0.00 0.00 0.00 2.90
362 363 1.094785 GCCATGAACTTGCCGTGTAT 58.905 50.000 0.00 0.00 0.00 2.29
363 364 1.202177 GCCATGAACTTGCCGTGTATG 60.202 52.381 0.00 0.00 0.00 2.39
364 365 1.401552 CCATGAACTTGCCGTGTATGG 59.598 52.381 0.00 0.00 35.15 2.74
372 373 2.497293 CCGTGTATGGCCGTAGCA 59.503 61.111 4.44 4.09 42.56 3.49
373 374 1.881252 CCGTGTATGGCCGTAGCAC 60.881 63.158 19.60 19.60 42.56 4.40
374 375 1.141019 CGTGTATGGCCGTAGCACT 59.859 57.895 23.53 0.00 42.56 4.40
375 376 0.459585 CGTGTATGGCCGTAGCACTT 60.460 55.000 23.53 0.00 42.56 3.16
376 377 1.287425 GTGTATGGCCGTAGCACTTC 58.713 55.000 21.11 5.96 42.56 3.01
377 378 0.177141 TGTATGGCCGTAGCACTTCC 59.823 55.000 4.44 0.00 42.56 3.46
378 379 0.532196 GTATGGCCGTAGCACTTCCC 60.532 60.000 4.44 0.00 42.56 3.97
379 380 0.978667 TATGGCCGTAGCACTTCCCA 60.979 55.000 0.00 0.00 42.56 4.37
380 381 1.635817 ATGGCCGTAGCACTTCCCAT 61.636 55.000 0.00 0.00 42.56 4.00
381 382 0.978667 TGGCCGTAGCACTTCCCATA 60.979 55.000 0.00 0.00 42.56 2.74
382 383 0.532196 GGCCGTAGCACTTCCCATAC 60.532 60.000 0.00 0.00 42.56 2.39
383 384 0.464452 GCCGTAGCACTTCCCATACT 59.536 55.000 0.00 0.00 39.53 2.12
384 385 1.806623 GCCGTAGCACTTCCCATACTG 60.807 57.143 0.00 0.00 39.53 2.74
385 386 1.571919 CGTAGCACTTCCCATACTGC 58.428 55.000 0.00 0.00 0.00 4.40
386 387 1.134818 CGTAGCACTTCCCATACTGCA 60.135 52.381 0.00 0.00 31.71 4.41
387 388 2.555199 GTAGCACTTCCCATACTGCAG 58.445 52.381 13.48 13.48 31.71 4.41
388 389 0.987294 AGCACTTCCCATACTGCAGT 59.013 50.000 25.12 25.12 31.71 4.40
389 390 2.187958 AGCACTTCCCATACTGCAGTA 58.812 47.619 27.91 27.91 34.67 2.74
390 391 2.774234 AGCACTTCCCATACTGCAGTAT 59.226 45.455 29.70 29.70 41.58 2.12
402 403 1.093972 TGCAGTATGGTTGCATTCGG 58.906 50.000 0.00 0.00 45.89 4.30
403 404 0.381801 GCAGTATGGTTGCATTCGGG 59.618 55.000 0.00 0.00 41.17 5.14
404 405 2.016604 GCAGTATGGTTGCATTCGGGA 61.017 52.381 0.00 0.00 41.17 5.14
405 406 2.575532 CAGTATGGTTGCATTCGGGAT 58.424 47.619 0.00 0.00 0.00 3.85
406 407 2.951642 CAGTATGGTTGCATTCGGGATT 59.048 45.455 0.00 0.00 0.00 3.01
407 408 4.133820 CAGTATGGTTGCATTCGGGATTA 58.866 43.478 0.00 0.00 0.00 1.75
408 409 4.214119 CAGTATGGTTGCATTCGGGATTAG 59.786 45.833 0.00 0.00 0.00 1.73
409 410 3.576078 ATGGTTGCATTCGGGATTAGA 57.424 42.857 0.00 0.00 0.00 2.10
410 411 3.576078 TGGTTGCATTCGGGATTAGAT 57.424 42.857 0.00 0.00 0.00 1.98
411 412 3.897239 TGGTTGCATTCGGGATTAGATT 58.103 40.909 0.00 0.00 0.00 2.40
412 413 4.277476 TGGTTGCATTCGGGATTAGATTT 58.723 39.130 0.00 0.00 0.00 2.17
413 414 4.709397 TGGTTGCATTCGGGATTAGATTTT 59.291 37.500 0.00 0.00 0.00 1.82
414 415 5.043248 GGTTGCATTCGGGATTAGATTTTG 58.957 41.667 0.00 0.00 0.00 2.44
415 416 5.394115 GGTTGCATTCGGGATTAGATTTTGT 60.394 40.000 0.00 0.00 0.00 2.83
416 417 5.913137 TGCATTCGGGATTAGATTTTGTT 57.087 34.783 0.00 0.00 0.00 2.83
417 418 5.649557 TGCATTCGGGATTAGATTTTGTTG 58.350 37.500 0.00 0.00 0.00 3.33
418 419 5.184864 TGCATTCGGGATTAGATTTTGTTGT 59.815 36.000 0.00 0.00 0.00 3.32
419 420 6.375736 TGCATTCGGGATTAGATTTTGTTGTA 59.624 34.615 0.00 0.00 0.00 2.41
420 421 7.094162 TGCATTCGGGATTAGATTTTGTTGTAA 60.094 33.333 0.00 0.00 0.00 2.41
421 422 7.757624 GCATTCGGGATTAGATTTTGTTGTAAA 59.242 33.333 0.00 0.00 0.00 2.01
434 435 3.385193 GTTGTAAACTTGGCATTGGCT 57.615 42.857 11.84 0.00 45.32 4.75
435 436 3.059166 GTTGTAAACTTGGCATTGGCTG 58.941 45.455 11.84 6.96 45.32 4.85
436 437 2.591923 TGTAAACTTGGCATTGGCTGA 58.408 42.857 11.84 0.00 40.87 4.26
437 438 2.557924 TGTAAACTTGGCATTGGCTGAG 59.442 45.455 11.84 11.30 40.87 3.35
438 439 1.999648 AAACTTGGCATTGGCTGAGA 58.000 45.000 11.84 0.00 40.87 3.27
439 440 1.999648 AACTTGGCATTGGCTGAGAA 58.000 45.000 11.84 0.00 40.87 2.87
440 441 1.542492 ACTTGGCATTGGCTGAGAAG 58.458 50.000 11.84 8.81 40.87 2.85
441 442 0.172803 CTTGGCATTGGCTGAGAAGC 59.827 55.000 11.84 0.00 40.87 3.86
449 450 2.973899 GCTGAGAAGCCTCCGTGA 59.026 61.111 0.00 0.00 38.66 4.35
450 451 1.153667 GCTGAGAAGCCTCCGTGAG 60.154 63.158 0.00 0.00 38.66 3.51
451 452 1.882989 GCTGAGAAGCCTCCGTGAGT 61.883 60.000 0.00 0.00 38.66 3.41
452 453 1.464734 CTGAGAAGCCTCCGTGAGTA 58.535 55.000 0.00 0.00 38.66 2.59
453 454 1.819288 CTGAGAAGCCTCCGTGAGTAA 59.181 52.381 0.00 0.00 38.66 2.24
454 455 2.428890 CTGAGAAGCCTCCGTGAGTAAT 59.571 50.000 0.00 0.00 38.66 1.89
455 456 2.166459 TGAGAAGCCTCCGTGAGTAATG 59.834 50.000 0.00 0.00 38.66 1.90
456 457 2.427453 GAGAAGCCTCCGTGAGTAATGA 59.573 50.000 1.12 0.00 33.30 2.57
457 458 2.428890 AGAAGCCTCCGTGAGTAATGAG 59.571 50.000 1.12 0.00 0.00 2.90
458 459 2.145397 AGCCTCCGTGAGTAATGAGA 57.855 50.000 0.00 0.00 0.00 3.27
459 460 2.457598 AGCCTCCGTGAGTAATGAGAA 58.542 47.619 0.00 0.00 0.00 2.87
460 461 3.034635 AGCCTCCGTGAGTAATGAGAAT 58.965 45.455 0.00 0.00 0.00 2.40
461 462 3.068873 AGCCTCCGTGAGTAATGAGAATC 59.931 47.826 0.00 0.00 0.00 2.52
462 463 3.068873 GCCTCCGTGAGTAATGAGAATCT 59.931 47.826 0.00 0.00 34.92 2.40
463 464 4.794655 GCCTCCGTGAGTAATGAGAATCTC 60.795 50.000 2.75 2.75 34.92 2.75
464 465 4.582656 CCTCCGTGAGTAATGAGAATCTCT 59.417 45.833 11.92 0.00 34.92 3.10
465 466 5.068460 CCTCCGTGAGTAATGAGAATCTCTT 59.932 44.000 11.92 2.08 34.92 2.85
466 467 6.406400 CCTCCGTGAGTAATGAGAATCTCTTT 60.406 42.308 11.92 13.37 34.92 2.52
467 468 6.936279 TCCGTGAGTAATGAGAATCTCTTTT 58.064 36.000 15.14 9.68 34.92 2.27
468 469 7.386851 TCCGTGAGTAATGAGAATCTCTTTTT 58.613 34.615 15.14 7.55 34.92 1.94
469 470 7.545965 TCCGTGAGTAATGAGAATCTCTTTTTC 59.454 37.037 15.14 13.36 34.92 2.29
470 471 7.547370 CCGTGAGTAATGAGAATCTCTTTTTCT 59.453 37.037 15.14 13.47 36.16 2.52
471 472 8.591312 CGTGAGTAATGAGAATCTCTTTTTCTC 58.409 37.037 21.63 21.63 46.04 2.87
472 473 8.878769 GTGAGTAATGAGAATCTCTTTTTCTCC 58.121 37.037 23.34 17.10 45.52 3.71
473 474 8.043710 TGAGTAATGAGAATCTCTTTTTCTCCC 58.956 37.037 23.34 12.64 45.52 4.30
474 475 7.044798 AGTAATGAGAATCTCTTTTTCTCCCG 58.955 38.462 15.14 0.00 45.52 5.14
475 476 3.600388 TGAGAATCTCTTTTTCTCCCGC 58.400 45.455 11.92 0.00 45.52 6.13
476 477 3.007940 TGAGAATCTCTTTTTCTCCCGCA 59.992 43.478 11.92 0.00 45.52 5.69
477 478 4.003648 GAGAATCTCTTTTTCTCCCGCAA 58.996 43.478 2.45 0.00 42.05 4.85
478 479 4.398319 AGAATCTCTTTTTCTCCCGCAAA 58.602 39.130 0.00 0.00 0.00 3.68
479 480 4.827284 AGAATCTCTTTTTCTCCCGCAAAA 59.173 37.500 0.00 0.00 0.00 2.44
480 481 5.301805 AGAATCTCTTTTTCTCCCGCAAAAA 59.698 36.000 0.00 0.00 32.93 1.94
505 506 9.987272 AAAAATCTTAAACAATTGAGGAGAAGG 57.013 29.630 13.59 0.00 0.00 3.46
506 507 8.712228 AAATCTTAAACAATTGAGGAGAAGGT 57.288 30.769 13.59 1.81 0.00 3.50
507 508 8.712228 AATCTTAAACAATTGAGGAGAAGGTT 57.288 30.769 13.59 7.55 0.00 3.50
508 509 7.745620 TCTTAAACAATTGAGGAGAAGGTTC 57.254 36.000 13.59 0.00 0.00 3.62
509 510 7.287061 TCTTAAACAATTGAGGAGAAGGTTCA 58.713 34.615 13.59 0.00 0.00 3.18
510 511 7.777910 TCTTAAACAATTGAGGAGAAGGTTCAA 59.222 33.333 13.59 0.00 35.52 2.69
511 512 6.790232 AAACAATTGAGGAGAAGGTTCAAA 57.210 33.333 13.59 0.00 34.80 2.69
512 513 6.790232 AACAATTGAGGAGAAGGTTCAAAA 57.210 33.333 13.59 0.00 34.80 2.44
513 514 6.149129 ACAATTGAGGAGAAGGTTCAAAAC 57.851 37.500 13.59 0.00 34.80 2.43
514 515 5.656416 ACAATTGAGGAGAAGGTTCAAAACA 59.344 36.000 13.59 0.00 34.80 2.83
515 516 6.154363 ACAATTGAGGAGAAGGTTCAAAACAA 59.846 34.615 13.59 0.00 34.80 2.83
516 517 6.790232 ATTGAGGAGAAGGTTCAAAACAAA 57.210 33.333 0.00 0.00 34.80 2.83
517 518 6.597832 TTGAGGAGAAGGTTCAAAACAAAA 57.402 33.333 0.00 0.00 0.00 2.44
518 519 6.790232 TGAGGAGAAGGTTCAAAACAAAAT 57.210 33.333 0.00 0.00 0.00 1.82
519 520 6.805713 TGAGGAGAAGGTTCAAAACAAAATC 58.194 36.000 0.00 0.00 0.00 2.17
520 521 6.379703 TGAGGAGAAGGTTCAAAACAAAATCA 59.620 34.615 0.00 0.00 0.00 2.57
521 522 6.809869 AGGAGAAGGTTCAAAACAAAATCAG 58.190 36.000 0.00 0.00 0.00 2.90
522 523 5.985530 GGAGAAGGTTCAAAACAAAATCAGG 59.014 40.000 0.00 0.00 0.00 3.86
523 524 6.183360 GGAGAAGGTTCAAAACAAAATCAGGA 60.183 38.462 0.00 0.00 0.00 3.86
524 525 7.181569 AGAAGGTTCAAAACAAAATCAGGAA 57.818 32.000 0.00 0.00 0.00 3.36
525 526 7.619965 AGAAGGTTCAAAACAAAATCAGGAAA 58.380 30.769 0.00 0.00 0.00 3.13
526 527 7.765819 AGAAGGTTCAAAACAAAATCAGGAAAG 59.234 33.333 0.00 0.00 0.00 2.62
527 528 7.181569 AGGTTCAAAACAAAATCAGGAAAGA 57.818 32.000 0.00 0.00 0.00 2.52
528 529 7.619965 AGGTTCAAAACAAAATCAGGAAAGAA 58.380 30.769 0.00 0.00 0.00 2.52
529 530 8.100164 AGGTTCAAAACAAAATCAGGAAAGAAA 58.900 29.630 0.00 0.00 0.00 2.52
530 531 8.726068 GGTTCAAAACAAAATCAGGAAAGAAAA 58.274 29.630 0.00 0.00 0.00 2.29
551 552 6.963017 AAAAACGACTTTACGCAAACTATG 57.037 33.333 0.00 0.00 36.70 2.23
552 553 4.657075 AACGACTTTACGCAAACTATGG 57.343 40.909 0.00 0.00 36.70 2.74
553 554 3.916761 ACGACTTTACGCAAACTATGGA 58.083 40.909 0.00 0.00 36.70 3.41
554 555 3.676646 ACGACTTTACGCAAACTATGGAC 59.323 43.478 0.00 0.00 36.70 4.02
555 556 3.924686 CGACTTTACGCAAACTATGGACT 59.075 43.478 0.00 0.00 0.00 3.85
556 557 4.387862 CGACTTTACGCAAACTATGGACTT 59.612 41.667 0.00 0.00 0.00 3.01
557 558 5.444218 CGACTTTACGCAAACTATGGACTTC 60.444 44.000 0.00 0.00 0.00 3.01
558 559 5.548406 ACTTTACGCAAACTATGGACTTCT 58.452 37.500 0.00 0.00 0.00 2.85
559 560 5.995897 ACTTTACGCAAACTATGGACTTCTT 59.004 36.000 0.00 0.00 0.00 2.52
560 561 6.485648 ACTTTACGCAAACTATGGACTTCTTT 59.514 34.615 0.00 0.00 0.00 2.52
561 562 6.476243 TTACGCAAACTATGGACTTCTTTC 57.524 37.500 0.00 0.00 0.00 2.62
562 563 4.385825 ACGCAAACTATGGACTTCTTTCA 58.614 39.130 0.00 0.00 0.00 2.69
563 564 4.819630 ACGCAAACTATGGACTTCTTTCAA 59.180 37.500 0.00 0.00 0.00 2.69
564 565 5.298276 ACGCAAACTATGGACTTCTTTCAAA 59.702 36.000 0.00 0.00 0.00 2.69
565 566 6.183360 ACGCAAACTATGGACTTCTTTCAAAA 60.183 34.615 0.00 0.00 0.00 2.44
566 567 6.695278 CGCAAACTATGGACTTCTTTCAAAAA 59.305 34.615 0.00 0.00 0.00 1.94
597 598 9.877178 CTATAGTGGAGTGGATATGTTAAATCC 57.123 37.037 0.00 0.00 42.84 3.01
692 695 2.845752 TTAGGCCACGCGGTCATGTC 62.846 60.000 12.47 0.00 40.51 3.06
696 699 4.134187 CACGCGGTCATGTCGTGC 62.134 66.667 12.47 9.32 45.22 5.34
697 700 4.656117 ACGCGGTCATGTCGTGCA 62.656 61.111 12.47 0.00 41.20 4.57
702 705 1.221466 CGGTCATGTCGTGCACACTT 61.221 55.000 18.64 9.44 38.04 3.16
703 706 1.790755 GGTCATGTCGTGCACACTTA 58.209 50.000 18.64 0.00 38.04 2.24
707 710 2.993220 TCATGTCGTGCACACTTACATC 59.007 45.455 18.64 0.00 38.04 3.06
738 742 8.147058 AGCTATACATAGATTTGTTCAGACCAG 58.853 37.037 0.30 0.00 32.05 4.00
841 849 4.214327 CGCCTCCGCCTCTCTTCC 62.214 72.222 0.00 0.00 0.00 3.46
914 922 0.984995 ACCTCCTTCCTTGCTACACC 59.015 55.000 0.00 0.00 0.00 4.16
919 927 0.400213 CTTCCTTGCTACACCCACCA 59.600 55.000 0.00 0.00 0.00 4.17
962 972 0.251653 ACCACTTCTCGAGTAGCCCA 60.252 55.000 17.94 0.00 36.65 5.36
1014 1025 1.522092 CGGCATGTCAAGAGCCCTA 59.478 57.895 0.00 0.00 45.56 3.53
1047 1058 2.922234 CCCCCATTCCTGAGGCTC 59.078 66.667 7.79 7.79 0.00 4.70
1174 1185 2.271800 CTCTGATAACCAGCGTGTTCC 58.728 52.381 0.00 0.00 42.62 3.62
1175 1186 0.999406 CTGATAACCAGCGTGTTCCG 59.001 55.000 0.00 0.00 35.89 4.30
1179 1190 0.320073 TAACCAGCGTGTTCCGGAAG 60.320 55.000 19.50 7.42 36.94 3.46
1327 1338 1.402588 GGTTCTCCGACGAGTTCTTCC 60.403 57.143 0.00 0.00 37.40 3.46
1580 1591 1.815003 GTGCCAGTTTGGGAGATTCAG 59.185 52.381 0.00 0.00 39.03 3.02
1590 1601 0.467804 GGAGATTCAGTGAGGCCCTC 59.532 60.000 2.98 2.98 0.00 4.30
1597 1608 3.071206 GTGAGGCCCTCTCGCTGA 61.071 66.667 12.94 0.00 46.53 4.26
1677 1688 0.678048 ATTTCCTCTGCCGGAACTGC 60.678 55.000 5.05 0.00 42.50 4.40
1696 1707 1.889105 CGGGTGGATGAGGCATTCG 60.889 63.158 0.00 0.00 0.00 3.34
1731 1742 1.019278 TGCGCAAGGAGGAAATCGAC 61.019 55.000 8.16 0.00 38.28 4.20
1790 1801 2.063378 GCAGAGAGGGGAGGGTGAG 61.063 68.421 0.00 0.00 0.00 3.51
1836 1847 3.695606 TCGTCTGAGGGCTGCCAC 61.696 66.667 22.05 14.12 0.00 5.01
1863 1874 6.893020 AATTCAGGGACTTATCAGGTACTT 57.107 37.500 0.00 0.00 30.16 2.24
1875 1886 2.912956 TCAGGTACTTCTTGATGGCCTT 59.087 45.455 3.32 0.00 34.60 4.35
1915 1926 0.175989 GGAGGCGAAGGACCTAGTTG 59.824 60.000 0.00 0.00 37.77 3.16
1916 1927 0.175989 GAGGCGAAGGACCTAGTTGG 59.824 60.000 0.00 0.00 37.77 3.77
2079 2090 6.060136 GGGTACTTGGACAAAACTTCTTACT 58.940 40.000 0.00 0.00 0.00 2.24
2080 2091 7.147514 TGGGTACTTGGACAAAACTTCTTACTA 60.148 37.037 0.00 0.00 0.00 1.82
2082 2093 7.712205 GGTACTTGGACAAAACTTCTTACTACA 59.288 37.037 0.00 0.00 0.00 2.74
2084 2095 8.154649 ACTTGGACAAAACTTCTTACTACATG 57.845 34.615 0.00 0.00 0.00 3.21
2085 2096 6.554334 TGGACAAAACTTCTTACTACATGC 57.446 37.500 0.00 0.00 0.00 4.06
2103 2114 6.947644 ACATGCTTATGCTGAAATGTATGA 57.052 33.333 1.96 0.00 40.48 2.15
2116 2127 2.643995 TGTATGATCATGCCAGTGGG 57.356 50.000 18.72 0.00 37.18 4.61
2168 2179 8.644619 CACTTGAGCAATGAGATTATTTTGTTG 58.355 33.333 0.00 0.00 0.00 3.33
2193 2204 1.299976 CTAGTGGACCAACCTGCCC 59.700 63.158 0.00 0.00 39.86 5.36
2249 2260 6.948309 CGGATCTTTTTCCTTATGGGGATTAT 59.052 38.462 0.00 0.00 35.07 1.28
2250 2261 7.451566 CGGATCTTTTTCCTTATGGGGATTATT 59.548 37.037 0.00 0.00 35.07 1.40
2251 2262 9.822727 GGATCTTTTTCCTTATGGGGATTATTA 57.177 33.333 0.00 0.00 35.07 0.98
2254 2265 9.654919 TCTTTTTCCTTATGGGGATTATTAAGG 57.345 33.333 0.00 0.00 35.07 2.69
2370 2381 4.008933 GTGTGAGCTCGCCCACCT 62.009 66.667 23.96 0.00 32.61 4.00
2371 2382 2.283604 TGTGAGCTCGCCCACCTA 60.284 61.111 23.96 1.48 32.61 3.08
2473 3318 5.626543 ACGTTTATATACGATGTACCTTGCG 59.373 40.000 20.36 0.00 43.99 4.85
2514 3359 3.087031 CCCTGATTTCAACATCAGTGCT 58.913 45.455 9.31 0.00 46.19 4.40
2570 3415 9.578576 AATATTGGTAAGCTCATGACATTATGT 57.421 29.630 0.00 0.00 0.00 2.29
2599 3444 8.641499 TTTGTTACAACTCAAATCCAACAATC 57.359 30.769 0.00 0.00 35.18 2.67
2600 3445 7.581213 TGTTACAACTCAAATCCAACAATCT 57.419 32.000 0.00 0.00 0.00 2.40
2601 3446 7.648142 TGTTACAACTCAAATCCAACAATCTC 58.352 34.615 0.00 0.00 0.00 2.75
2602 3447 7.502226 TGTTACAACTCAAATCCAACAATCTCT 59.498 33.333 0.00 0.00 0.00 3.10
2603 3448 6.566197 ACAACTCAAATCCAACAATCTCTC 57.434 37.500 0.00 0.00 0.00 3.20
2687 3532 8.766476 TCTTCACTTAATCCTTCTGATGATTCT 58.234 33.333 6.30 0.00 33.46 2.40
2688 3533 8.954950 TTCACTTAATCCTTCTGATGATTCTC 57.045 34.615 6.30 0.00 33.46 2.87
2689 3534 8.316497 TCACTTAATCCTTCTGATGATTCTCT 57.684 34.615 6.30 0.00 33.46 3.10
2690 3535 8.420222 TCACTTAATCCTTCTGATGATTCTCTC 58.580 37.037 6.30 0.00 33.46 3.20
2691 3536 8.423349 CACTTAATCCTTCTGATGATTCTCTCT 58.577 37.037 6.30 0.00 33.46 3.10
2692 3537 8.423349 ACTTAATCCTTCTGATGATTCTCTCTG 58.577 37.037 6.30 0.00 33.46 3.35
2693 3538 5.811796 ATCCTTCTGATGATTCTCTCTGG 57.188 43.478 0.00 0.00 30.54 3.86
2694 3539 4.876580 TCCTTCTGATGATTCTCTCTGGA 58.123 43.478 0.00 0.00 0.00 3.86
2695 3540 4.648762 TCCTTCTGATGATTCTCTCTGGAC 59.351 45.833 0.00 0.00 0.00 4.02
2696 3541 4.202243 CCTTCTGATGATTCTCTCTGGACC 60.202 50.000 0.00 0.00 0.00 4.46
2697 3542 3.986435 TCTGATGATTCTCTCTGGACCA 58.014 45.455 0.00 0.00 0.00 4.02
2729 3574 3.320541 TGAAAACCAGGCAAACAGTATGG 59.679 43.478 0.00 0.00 43.62 2.74
2783 3628 6.208599 CCTTTTATACCCTTGAAGTGCAGAAA 59.791 38.462 0.00 0.00 0.00 2.52
2793 3638 5.518848 TGAAGTGCAGAAAATCATGTTGT 57.481 34.783 0.00 0.00 0.00 3.32
2865 3710 8.726988 TGTCCCTTAATAATGTTTTCTCTTTCG 58.273 33.333 0.00 0.00 0.00 3.46
3017 3882 8.388656 TCATCCCTTAGAGTAAACATTAACCT 57.611 34.615 0.00 0.00 0.00 3.50
3032 3897 8.747538 AACATTAACCTCTTTACTCAAGTTGT 57.252 30.769 2.11 0.00 33.66 3.32
3037 3902 5.770417 ACCTCTTTACTCAAGTTGTCGTAG 58.230 41.667 2.11 0.00 33.66 3.51
3040 3905 7.091443 CCTCTTTACTCAAGTTGTCGTAGATT 58.909 38.462 2.11 0.00 34.12 2.40
3046 3911 5.401674 ACTCAAGTTGTCGTAGATTTCGTTC 59.598 40.000 2.11 0.00 40.67 3.95
3047 3912 4.682860 TCAAGTTGTCGTAGATTTCGTTCC 59.317 41.667 2.11 0.00 40.67 3.62
3058 3923 8.030692 TCGTAGATTTCGTTCCAAGATAAGAAA 58.969 33.333 0.00 0.00 33.08 2.52
3059 3924 8.653338 CGTAGATTTCGTTCCAAGATAAGAAAA 58.347 33.333 0.00 0.00 32.44 2.29
3062 3927 9.067986 AGATTTCGTTCCAAGATAAGAAAAAGT 57.932 29.630 0.00 0.00 32.44 2.66
3063 3928 9.118236 GATTTCGTTCCAAGATAAGAAAAAGTG 57.882 33.333 0.00 0.00 32.44 3.16
3102 3967 8.986477 ATGGAATCTGCAAGTTAATTTAACAC 57.014 30.769 18.83 9.91 41.07 3.32
3207 4072 9.623350 CACATCATTGTGTACATCAAAATACAA 57.377 29.630 12.68 4.79 46.68 2.41
3263 4128 1.328279 GCTAAAAACACAGGGCTGGT 58.672 50.000 0.00 0.00 34.19 4.00
3317 4182 8.612619 CAGAAATATAAAAGACATAACTGCCGT 58.387 33.333 0.00 0.00 0.00 5.68
3350 4218 5.780984 ACTTACTGAAGTACTGCCTGTTAC 58.219 41.667 0.00 0.00 44.36 2.50
3388 4256 5.298347 ACTTGTCTTGTTACTAGCCTTGAC 58.702 41.667 0.00 0.00 0.00 3.18
3407 4275 5.085636 TGACGACAAATTTTACCGTCTTG 57.914 39.130 24.49 8.18 46.58 3.02
3411 4279 4.553429 CGACAAATTTTACCGTCTTGATGC 59.447 41.667 5.24 0.00 0.00 3.91
3492 4361 1.446272 GCCGTAGAGCTGTGTGGAC 60.446 63.158 7.31 0.00 0.00 4.02
3603 4472 0.177604 GACCTCTCCTGGTGCATCAG 59.822 60.000 20.59 20.59 41.00 2.90
3620 4489 1.093159 CAGGAGTTGCTTGAGATGCC 58.907 55.000 0.00 0.00 0.00 4.40
3697 4587 4.137543 ACAAATTCAGAAGAAAGCGACCT 58.862 39.130 0.00 0.00 37.29 3.85
3698 4588 4.023707 ACAAATTCAGAAGAAAGCGACCTG 60.024 41.667 0.00 0.00 37.29 4.00
3714 4604 3.259902 GACCTGGTTTTCTAGCTTACCG 58.740 50.000 0.00 0.00 33.29 4.02
3797 4687 9.057089 ACGAAGAACCATTCCAGATTAATTATC 57.943 33.333 0.00 0.00 0.00 1.75
3862 4753 9.745018 AGAACCAGAAGAATCATTCTAAAATCA 57.255 29.630 0.00 0.00 39.61 2.57
3897 4788 1.071019 CGGACGAACATGTGTCGAGG 61.071 60.000 26.23 15.53 35.95 4.63
3954 4845 1.725641 TGCGCAGGCAGTATATATGC 58.274 50.000 5.66 4.70 46.21 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.268387 ACTATGGAACCAAATTATGTGGCA 58.732 37.500 0.41 0.00 40.02 4.92
1 2 5.852282 ACTATGGAACCAAATTATGTGGC 57.148 39.130 0.41 0.00 40.02 5.01
2 3 8.093927 ACAAAACTATGGAACCAAATTATGTGG 58.906 33.333 0.00 0.00 42.28 4.17
7 8 8.578151 GGTGTACAAAACTATGGAACCAAATTA 58.422 33.333 0.00 0.00 0.00 1.40
8 9 7.438564 GGTGTACAAAACTATGGAACCAAATT 58.561 34.615 0.00 0.00 0.00 1.82
9 10 6.014925 GGGTGTACAAAACTATGGAACCAAAT 60.015 38.462 0.00 0.00 0.00 2.32
10 11 5.302313 GGGTGTACAAAACTATGGAACCAAA 59.698 40.000 0.00 0.00 0.00 3.28
11 12 4.828387 GGGTGTACAAAACTATGGAACCAA 59.172 41.667 0.00 0.00 0.00 3.67
12 13 4.105057 AGGGTGTACAAAACTATGGAACCA 59.895 41.667 0.00 0.00 0.00 3.67
13 14 4.659115 AGGGTGTACAAAACTATGGAACC 58.341 43.478 0.00 0.00 0.00 3.62
14 15 5.766174 TGAAGGGTGTACAAAACTATGGAAC 59.234 40.000 0.00 0.00 0.00 3.62
15 16 5.942961 TGAAGGGTGTACAAAACTATGGAA 58.057 37.500 0.00 0.00 0.00 3.53
16 17 5.308497 TCTGAAGGGTGTACAAAACTATGGA 59.692 40.000 0.00 0.00 0.00 3.41
17 18 5.556915 TCTGAAGGGTGTACAAAACTATGG 58.443 41.667 0.00 0.00 0.00 2.74
18 19 7.687941 ATTCTGAAGGGTGTACAAAACTATG 57.312 36.000 0.00 0.00 0.00 2.23
19 20 7.724061 ACAATTCTGAAGGGTGTACAAAACTAT 59.276 33.333 0.00 0.00 0.00 2.12
20 21 7.057894 ACAATTCTGAAGGGTGTACAAAACTA 58.942 34.615 0.00 0.00 0.00 2.24
21 22 5.891551 ACAATTCTGAAGGGTGTACAAAACT 59.108 36.000 0.00 0.00 0.00 2.66
22 23 6.144078 ACAATTCTGAAGGGTGTACAAAAC 57.856 37.500 0.00 0.00 0.00 2.43
23 24 5.300792 GGACAATTCTGAAGGGTGTACAAAA 59.699 40.000 0.00 0.00 0.00 2.44
24 25 4.825085 GGACAATTCTGAAGGGTGTACAAA 59.175 41.667 0.00 0.00 0.00 2.83
25 26 4.141367 TGGACAATTCTGAAGGGTGTACAA 60.141 41.667 11.87 0.77 30.13 2.41
26 27 3.392947 TGGACAATTCTGAAGGGTGTACA 59.607 43.478 10.75 10.75 30.59 2.90
27 28 4.015872 TGGACAATTCTGAAGGGTGTAC 57.984 45.455 6.84 6.84 0.00 2.90
28 29 4.042809 ACATGGACAATTCTGAAGGGTGTA 59.957 41.667 0.00 0.00 0.00 2.90
29 30 3.181429 ACATGGACAATTCTGAAGGGTGT 60.181 43.478 0.00 0.29 0.00 4.16
30 31 3.424703 ACATGGACAATTCTGAAGGGTG 58.575 45.455 0.00 0.00 0.00 4.61
31 32 3.331889 AGACATGGACAATTCTGAAGGGT 59.668 43.478 0.00 0.00 0.00 4.34
32 33 3.960571 AGACATGGACAATTCTGAAGGG 58.039 45.455 0.00 0.00 0.00 3.95
33 34 7.555554 AGATTAAGACATGGACAATTCTGAAGG 59.444 37.037 0.00 0.00 0.00 3.46
34 35 8.503458 AGATTAAGACATGGACAATTCTGAAG 57.497 34.615 0.00 0.00 0.00 3.02
35 36 8.868522 AAGATTAAGACATGGACAATTCTGAA 57.131 30.769 0.00 0.00 0.00 3.02
36 37 9.958180 TTAAGATTAAGACATGGACAATTCTGA 57.042 29.630 0.00 0.00 0.00 3.27
37 38 9.994432 GTTAAGATTAAGACATGGACAATTCTG 57.006 33.333 0.00 0.00 0.00 3.02
38 39 9.965902 AGTTAAGATTAAGACATGGACAATTCT 57.034 29.630 0.00 0.00 0.00 2.40
39 40 9.994432 CAGTTAAGATTAAGACATGGACAATTC 57.006 33.333 0.00 0.00 0.00 2.17
40 41 9.520515 ACAGTTAAGATTAAGACATGGACAATT 57.479 29.630 0.00 0.00 0.00 2.32
41 42 9.520515 AACAGTTAAGATTAAGACATGGACAAT 57.479 29.630 0.00 0.00 0.00 2.71
42 43 8.918202 AACAGTTAAGATTAAGACATGGACAA 57.082 30.769 0.00 0.00 0.00 3.18
43 44 8.918202 AAACAGTTAAGATTAAGACATGGACA 57.082 30.769 0.00 0.00 0.00 4.02
72 73 9.822185 ACAAATTGTTTGAGAATTAAGAAAGCT 57.178 25.926 9.21 0.00 43.26 3.74
86 87 9.497030 GCGTTATCACATATACAAATTGTTTGA 57.503 29.630 3.17 0.74 43.26 2.69
87 88 8.460629 CGCGTTATCACATATACAAATTGTTTG 58.539 33.333 3.17 3.11 45.95 2.93
88 89 8.178964 ACGCGTTATCACATATACAAATTGTTT 58.821 29.630 5.58 0.00 0.00 2.83
89 90 7.690228 ACGCGTTATCACATATACAAATTGTT 58.310 30.769 5.58 0.00 0.00 2.83
90 91 7.241663 ACGCGTTATCACATATACAAATTGT 57.758 32.000 5.58 3.43 0.00 2.71
91 92 7.111455 CCAACGCGTTATCACATATACAAATTG 59.889 37.037 26.11 6.02 0.00 2.32
92 93 7.011576 TCCAACGCGTTATCACATATACAAATT 59.988 33.333 26.11 0.00 0.00 1.82
93 94 6.480651 TCCAACGCGTTATCACATATACAAAT 59.519 34.615 26.11 0.00 0.00 2.32
94 95 5.811100 TCCAACGCGTTATCACATATACAAA 59.189 36.000 26.11 0.00 0.00 2.83
95 96 5.232626 GTCCAACGCGTTATCACATATACAA 59.767 40.000 26.11 0.00 0.00 2.41
96 97 4.741185 GTCCAACGCGTTATCACATATACA 59.259 41.667 26.11 0.00 0.00 2.29
97 98 4.143680 CGTCCAACGCGTTATCACATATAC 60.144 45.833 26.11 10.62 33.65 1.47
98 99 3.976306 CGTCCAACGCGTTATCACATATA 59.024 43.478 26.11 0.00 33.65 0.86
99 100 2.792674 CGTCCAACGCGTTATCACATAT 59.207 45.455 26.11 0.00 33.65 1.78
100 101 2.186891 CGTCCAACGCGTTATCACATA 58.813 47.619 26.11 2.14 33.65 2.29
101 102 0.996462 CGTCCAACGCGTTATCACAT 59.004 50.000 26.11 0.00 33.65 3.21
102 103 2.436795 CGTCCAACGCGTTATCACA 58.563 52.632 26.11 3.74 33.65 3.58
112 113 2.579787 CTAGCTCGGCGTCCAACG 60.580 66.667 6.85 0.00 45.88 4.10
113 114 2.886124 GCTAGCTCGGCGTCCAAC 60.886 66.667 7.70 0.00 0.00 3.77
114 115 4.492160 CGCTAGCTCGGCGTCCAA 62.492 66.667 20.96 0.00 46.37 3.53
126 127 4.554363 CTCCCGACACGCCGCTAG 62.554 72.222 0.00 0.00 0.00 3.42
155 156 3.152400 ACCGTACGATGGAGGGCC 61.152 66.667 18.76 0.00 0.00 5.80
156 157 2.106332 CACCGTACGATGGAGGGC 59.894 66.667 18.76 0.00 0.00 5.19
157 158 2.106332 GCACCGTACGATGGAGGG 59.894 66.667 18.76 0.90 0.00 4.30
158 159 1.226974 CAGCACCGTACGATGGAGG 60.227 63.158 18.76 0.48 0.00 4.30
159 160 1.878522 GCAGCACCGTACGATGGAG 60.879 63.158 18.76 1.31 0.00 3.86
160 161 2.183300 GCAGCACCGTACGATGGA 59.817 61.111 18.76 0.00 0.00 3.41
161 162 2.890474 GGCAGCACCGTACGATGG 60.890 66.667 18.76 6.63 0.00 3.51
162 163 2.890474 GGGCAGCACCGTACGATG 60.890 66.667 18.76 12.08 40.62 3.84
163 164 2.252072 AATGGGCAGCACCGTACGAT 62.252 55.000 18.76 0.00 40.62 3.73
164 165 2.457743 AAATGGGCAGCACCGTACGA 62.458 55.000 18.76 0.00 40.62 3.43
165 166 1.582610 AAAATGGGCAGCACCGTACG 61.583 55.000 8.69 8.69 40.62 3.67
166 167 0.109319 CAAAATGGGCAGCACCGTAC 60.109 55.000 0.00 0.00 40.62 3.67
167 168 1.247419 CCAAAATGGGCAGCACCGTA 61.247 55.000 0.00 0.00 40.62 4.02
168 169 2.573083 CCAAAATGGGCAGCACCGT 61.573 57.895 0.00 0.00 40.62 4.83
169 170 2.262292 CCAAAATGGGCAGCACCG 59.738 61.111 0.00 0.00 40.62 4.94
177 178 1.216178 CAAGCTCGGCCAAAATGGG 59.784 57.895 2.24 0.00 38.19 4.00
178 179 0.819582 ATCAAGCTCGGCCAAAATGG 59.180 50.000 2.24 0.00 41.55 3.16
179 180 2.542411 GCTATCAAGCTCGGCCAAAATG 60.542 50.000 2.24 0.00 45.85 2.32
180 181 1.678101 GCTATCAAGCTCGGCCAAAAT 59.322 47.619 2.24 0.00 45.85 1.82
181 182 1.094785 GCTATCAAGCTCGGCCAAAA 58.905 50.000 2.24 0.00 45.85 2.44
182 183 2.780595 GCTATCAAGCTCGGCCAAA 58.219 52.632 2.24 0.00 45.85 3.28
183 184 4.540153 GCTATCAAGCTCGGCCAA 57.460 55.556 2.24 0.00 45.85 4.52
191 192 3.341835 GCCTCCGCGCTATCAAGC 61.342 66.667 5.56 0.00 45.86 4.01
202 203 2.890847 GATCAGTGACACCGCCTCCG 62.891 65.000 0.84 0.00 0.00 4.63
203 204 1.153549 GATCAGTGACACCGCCTCC 60.154 63.158 0.84 0.00 0.00 4.30
204 205 0.176680 ATGATCAGTGACACCGCCTC 59.823 55.000 0.09 0.00 0.00 4.70
205 206 1.410517 CTATGATCAGTGACACCGCCT 59.589 52.381 0.09 0.00 0.00 5.52
206 207 1.858091 CTATGATCAGTGACACCGCC 58.142 55.000 0.09 0.00 0.00 6.13
207 208 1.212616 GCTATGATCAGTGACACCGC 58.787 55.000 0.09 0.00 0.00 5.68
208 209 2.196749 GTGCTATGATCAGTGACACCG 58.803 52.381 0.09 0.00 0.00 4.94
209 210 2.932614 GTGTGCTATGATCAGTGACACC 59.067 50.000 14.62 6.37 30.71 4.16
210 211 3.854666 AGTGTGCTATGATCAGTGACAC 58.145 45.455 16.55 16.55 34.12 3.67
211 212 3.118992 GGAGTGTGCTATGATCAGTGACA 60.119 47.826 0.09 0.00 0.00 3.58
212 213 3.452474 GGAGTGTGCTATGATCAGTGAC 58.548 50.000 0.09 0.00 0.00 3.67
213 214 2.099756 CGGAGTGTGCTATGATCAGTGA 59.900 50.000 0.09 0.00 0.00 3.41
214 215 2.099756 TCGGAGTGTGCTATGATCAGTG 59.900 50.000 0.09 0.00 0.00 3.66
215 216 2.379005 TCGGAGTGTGCTATGATCAGT 58.621 47.619 0.09 0.00 0.00 3.41
216 217 3.005155 TCATCGGAGTGTGCTATGATCAG 59.995 47.826 0.09 0.00 0.00 2.90
217 218 2.958355 TCATCGGAGTGTGCTATGATCA 59.042 45.455 0.00 0.00 0.00 2.92
218 219 3.650070 TCATCGGAGTGTGCTATGATC 57.350 47.619 0.00 0.00 0.00 2.92
219 220 3.366781 CGATCATCGGAGTGTGCTATGAT 60.367 47.826 0.00 0.00 39.39 2.45
220 221 2.030805 CGATCATCGGAGTGTGCTATGA 60.031 50.000 0.00 0.00 36.00 2.15
221 222 2.030805 TCGATCATCGGAGTGTGCTATG 60.031 50.000 7.33 0.00 40.88 2.23
222 223 2.230660 TCGATCATCGGAGTGTGCTAT 58.769 47.619 7.33 0.00 40.88 2.97
223 224 1.675552 TCGATCATCGGAGTGTGCTA 58.324 50.000 7.33 0.00 40.88 3.49
224 225 1.000827 GATCGATCATCGGAGTGTGCT 60.001 52.381 20.52 0.00 40.88 4.40
225 226 1.413382 GATCGATCATCGGAGTGTGC 58.587 55.000 20.52 0.00 40.88 4.57
245 246 4.814234 TCCTTAACCAACATGCGATGTATC 59.186 41.667 0.00 0.00 44.07 2.24
246 247 4.776349 TCCTTAACCAACATGCGATGTAT 58.224 39.130 0.00 0.00 44.07 2.29
247 248 4.081365 TCTCCTTAACCAACATGCGATGTA 60.081 41.667 0.00 0.00 44.07 2.29
249 250 3.270027 TCTCCTTAACCAACATGCGATG 58.730 45.455 0.00 0.00 0.00 3.84
250 251 3.627395 TCTCCTTAACCAACATGCGAT 57.373 42.857 0.00 0.00 0.00 4.58
251 252 3.627395 ATCTCCTTAACCAACATGCGA 57.373 42.857 0.00 0.00 0.00 5.10
252 253 5.584649 TCTTAATCTCCTTAACCAACATGCG 59.415 40.000 0.00 0.00 0.00 4.73
253 254 7.391148 TTCTTAATCTCCTTAACCAACATGC 57.609 36.000 0.00 0.00 0.00 4.06
254 255 8.624776 GGATTCTTAATCTCCTTAACCAACATG 58.375 37.037 0.00 0.00 38.01 3.21
255 256 7.499232 CGGATTCTTAATCTCCTTAACCAACAT 59.501 37.037 0.11 0.00 38.01 2.71
256 257 6.821665 CGGATTCTTAATCTCCTTAACCAACA 59.178 38.462 0.11 0.00 38.01 3.33
257 258 7.011202 GTCGGATTCTTAATCTCCTTAACCAAC 59.989 40.741 0.11 0.00 38.01 3.77
258 259 7.046033 GTCGGATTCTTAATCTCCTTAACCAA 58.954 38.462 0.11 0.00 38.01 3.67
259 260 6.407752 GGTCGGATTCTTAATCTCCTTAACCA 60.408 42.308 0.11 0.00 38.01 3.67
260 261 5.990386 GGTCGGATTCTTAATCTCCTTAACC 59.010 44.000 0.11 0.00 38.01 2.85
261 262 6.818233 AGGTCGGATTCTTAATCTCCTTAAC 58.182 40.000 0.11 0.00 38.01 2.01
262 263 6.610020 TGAGGTCGGATTCTTAATCTCCTTAA 59.390 38.462 0.11 0.00 38.01 1.85
263 264 6.134055 TGAGGTCGGATTCTTAATCTCCTTA 58.866 40.000 0.11 1.48 38.01 2.69
264 265 4.962995 TGAGGTCGGATTCTTAATCTCCTT 59.037 41.667 0.11 0.00 38.01 3.36
265 266 4.547671 TGAGGTCGGATTCTTAATCTCCT 58.452 43.478 9.47 9.47 38.01 3.69
266 267 4.939052 TGAGGTCGGATTCTTAATCTCC 57.061 45.455 0.11 1.84 38.01 3.71
267 268 5.751028 CAGTTGAGGTCGGATTCTTAATCTC 59.249 44.000 0.11 0.00 38.01 2.75
268 269 5.422331 TCAGTTGAGGTCGGATTCTTAATCT 59.578 40.000 0.11 0.00 38.01 2.40
269 270 5.661458 TCAGTTGAGGTCGGATTCTTAATC 58.339 41.667 0.00 0.00 37.17 1.75
270 271 5.665459 CTCAGTTGAGGTCGGATTCTTAAT 58.335 41.667 1.09 0.00 38.48 1.40
271 272 5.073311 CTCAGTTGAGGTCGGATTCTTAA 57.927 43.478 1.09 0.00 38.48 1.85
272 273 4.720649 CTCAGTTGAGGTCGGATTCTTA 57.279 45.455 1.09 0.00 38.48 2.10
273 274 3.601443 CTCAGTTGAGGTCGGATTCTT 57.399 47.619 1.09 0.00 38.48 2.52
284 285 5.602145 AGAAATCTCCCTATCCTCAGTTGAG 59.398 44.000 2.09 2.09 41.71 3.02
285 286 5.533112 AGAAATCTCCCTATCCTCAGTTGA 58.467 41.667 0.00 0.00 0.00 3.18
286 287 5.885449 AGAAATCTCCCTATCCTCAGTTG 57.115 43.478 0.00 0.00 0.00 3.16
287 288 6.899892 AAAGAAATCTCCCTATCCTCAGTT 57.100 37.500 0.00 0.00 0.00 3.16
288 289 6.899892 AAAAGAAATCTCCCTATCCTCAGT 57.100 37.500 0.00 0.00 0.00 3.41
289 290 8.028652 AGTAAAAGAAATCTCCCTATCCTCAG 57.971 38.462 0.00 0.00 0.00 3.35
290 291 7.201920 CGAGTAAAAGAAATCTCCCTATCCTCA 60.202 40.741 0.00 0.00 0.00 3.86
291 292 7.149307 CGAGTAAAAGAAATCTCCCTATCCTC 58.851 42.308 0.00 0.00 0.00 3.71
292 293 6.463190 GCGAGTAAAAGAAATCTCCCTATCCT 60.463 42.308 0.00 0.00 0.00 3.24
293 294 5.697178 GCGAGTAAAAGAAATCTCCCTATCC 59.303 44.000 0.00 0.00 0.00 2.59
294 295 6.422400 CAGCGAGTAAAAGAAATCTCCCTATC 59.578 42.308 0.00 0.00 0.00 2.08
295 296 6.127026 ACAGCGAGTAAAAGAAATCTCCCTAT 60.127 38.462 0.00 0.00 0.00 2.57
296 297 5.187186 ACAGCGAGTAAAAGAAATCTCCCTA 59.813 40.000 0.00 0.00 0.00 3.53
297 298 4.020128 ACAGCGAGTAAAAGAAATCTCCCT 60.020 41.667 0.00 0.00 0.00 4.20
298 299 4.254492 ACAGCGAGTAAAAGAAATCTCCC 58.746 43.478 0.00 0.00 0.00 4.30
299 300 5.179555 ACAACAGCGAGTAAAAGAAATCTCC 59.820 40.000 0.00 0.00 0.00 3.71
300 301 6.229561 ACAACAGCGAGTAAAAGAAATCTC 57.770 37.500 0.00 0.00 0.00 2.75
301 302 5.107453 CGACAACAGCGAGTAAAAGAAATCT 60.107 40.000 0.00 0.00 0.00 2.40
302 303 5.073478 CGACAACAGCGAGTAAAAGAAATC 58.927 41.667 0.00 0.00 0.00 2.17
303 304 4.084013 CCGACAACAGCGAGTAAAAGAAAT 60.084 41.667 0.00 0.00 0.00 2.17
304 305 3.246699 CCGACAACAGCGAGTAAAAGAAA 59.753 43.478 0.00 0.00 0.00 2.52
305 306 2.798283 CCGACAACAGCGAGTAAAAGAA 59.202 45.455 0.00 0.00 0.00 2.52
306 307 2.223876 ACCGACAACAGCGAGTAAAAGA 60.224 45.455 0.00 0.00 0.00 2.52
307 308 2.132762 ACCGACAACAGCGAGTAAAAG 58.867 47.619 0.00 0.00 0.00 2.27
308 309 2.129607 GACCGACAACAGCGAGTAAAA 58.870 47.619 0.00 0.00 0.00 1.52
309 310 1.067364 TGACCGACAACAGCGAGTAAA 59.933 47.619 0.00 0.00 0.00 2.01
310 311 0.669619 TGACCGACAACAGCGAGTAA 59.330 50.000 0.00 0.00 0.00 2.24
311 312 0.039798 GTGACCGACAACAGCGAGTA 60.040 55.000 0.00 0.00 0.00 2.59
312 313 1.299926 GTGACCGACAACAGCGAGT 60.300 57.895 0.00 0.00 0.00 4.18
313 314 0.874175 TTGTGACCGACAACAGCGAG 60.874 55.000 0.00 0.00 39.78 5.03
314 315 0.460459 TTTGTGACCGACAACAGCGA 60.460 50.000 0.00 0.00 44.53 4.93
315 316 0.375454 TTTTGTGACCGACAACAGCG 59.625 50.000 0.00 0.00 44.53 5.18
316 317 2.774439 ATTTTGTGACCGACAACAGC 57.226 45.000 0.00 0.00 44.53 4.40
317 318 5.816919 ACTTAATTTTGTGACCGACAACAG 58.183 37.500 0.00 0.00 44.53 3.16
318 319 5.821516 ACTTAATTTTGTGACCGACAACA 57.178 34.783 0.00 0.00 44.53 3.33
319 320 6.358822 GCTAACTTAATTTTGTGACCGACAAC 59.641 38.462 0.00 0.00 44.53 3.32
320 321 6.432107 GCTAACTTAATTTTGTGACCGACAA 58.568 36.000 0.00 0.00 43.11 3.18
321 322 5.049267 GGCTAACTTAATTTTGTGACCGACA 60.049 40.000 0.00 0.00 0.00 4.35
322 323 5.049267 TGGCTAACTTAATTTTGTGACCGAC 60.049 40.000 0.00 0.00 0.00 4.79
323 324 5.064558 TGGCTAACTTAATTTTGTGACCGA 58.935 37.500 0.00 0.00 0.00 4.69
324 325 5.365403 TGGCTAACTTAATTTTGTGACCG 57.635 39.130 0.00 0.00 0.00 4.79
325 326 6.919721 TCATGGCTAACTTAATTTTGTGACC 58.080 36.000 0.00 0.00 0.00 4.02
326 327 8.082242 AGTTCATGGCTAACTTAATTTTGTGAC 58.918 33.333 0.00 0.00 33.39 3.67
327 328 8.177119 AGTTCATGGCTAACTTAATTTTGTGA 57.823 30.769 0.00 0.00 33.39 3.58
328 329 8.702438 CAAGTTCATGGCTAACTTAATTTTGTG 58.298 33.333 9.87 0.00 43.52 3.33
329 330 7.384932 GCAAGTTCATGGCTAACTTAATTTTGT 59.615 33.333 9.87 0.00 43.52 2.83
330 331 7.148590 GGCAAGTTCATGGCTAACTTAATTTTG 60.149 37.037 9.87 1.27 43.52 2.44
331 332 6.873605 GGCAAGTTCATGGCTAACTTAATTTT 59.126 34.615 9.87 0.00 43.52 1.82
332 333 6.398095 GGCAAGTTCATGGCTAACTTAATTT 58.602 36.000 9.87 0.00 43.52 1.82
333 334 5.393027 CGGCAAGTTCATGGCTAACTTAATT 60.393 40.000 9.87 0.00 43.52 1.40
334 335 4.096382 CGGCAAGTTCATGGCTAACTTAAT 59.904 41.667 9.87 0.00 43.52 1.40
335 336 3.438781 CGGCAAGTTCATGGCTAACTTAA 59.561 43.478 9.87 0.00 43.52 1.85
336 337 3.006940 CGGCAAGTTCATGGCTAACTTA 58.993 45.455 9.87 0.00 43.52 2.24
337 338 1.812571 CGGCAAGTTCATGGCTAACTT 59.187 47.619 5.43 5.43 45.64 2.66
338 339 1.271379 ACGGCAAGTTCATGGCTAACT 60.271 47.619 0.00 0.00 43.23 2.24
339 340 1.135689 CACGGCAAGTTCATGGCTAAC 60.136 52.381 0.00 0.00 43.23 2.34
340 341 1.164411 CACGGCAAGTTCATGGCTAA 58.836 50.000 0.00 0.00 43.23 3.09
341 342 0.036164 ACACGGCAAGTTCATGGCTA 59.964 50.000 0.00 0.00 43.23 3.93
342 343 0.036164 TACACGGCAAGTTCATGGCT 59.964 50.000 0.00 0.00 43.23 4.75
343 344 1.094785 ATACACGGCAAGTTCATGGC 58.905 50.000 0.00 0.00 42.08 4.40
344 345 1.401552 CCATACACGGCAAGTTCATGG 59.598 52.381 0.00 6.73 36.10 3.66
345 346 2.830772 CCATACACGGCAAGTTCATG 57.169 50.000 0.00 0.00 0.00 3.07
355 356 1.881252 GTGCTACGGCCATACACGG 60.881 63.158 2.24 0.00 37.74 4.94
356 357 0.459585 AAGTGCTACGGCCATACACG 60.460 55.000 2.24 0.00 36.38 4.49
357 358 1.287425 GAAGTGCTACGGCCATACAC 58.713 55.000 2.24 5.24 37.74 2.90
358 359 0.177141 GGAAGTGCTACGGCCATACA 59.823 55.000 2.24 0.00 37.74 2.29
359 360 0.532196 GGGAAGTGCTACGGCCATAC 60.532 60.000 2.24 0.00 37.74 2.39
360 361 0.978667 TGGGAAGTGCTACGGCCATA 60.979 55.000 2.24 0.00 37.74 2.74
361 362 1.635817 ATGGGAAGTGCTACGGCCAT 61.636 55.000 2.24 0.00 37.74 4.40
362 363 0.978667 TATGGGAAGTGCTACGGCCA 60.979 55.000 2.24 0.00 37.74 5.36
363 364 0.532196 GTATGGGAAGTGCTACGGCC 60.532 60.000 0.00 0.00 37.74 6.13
364 365 0.464452 AGTATGGGAAGTGCTACGGC 59.536 55.000 0.00 0.00 39.26 5.68
365 366 1.806623 GCAGTATGGGAAGTGCTACGG 60.807 57.143 0.00 0.00 41.65 4.02
366 367 1.134818 TGCAGTATGGGAAGTGCTACG 60.135 52.381 5.38 0.00 44.55 3.51
367 368 2.093447 ACTGCAGTATGGGAAGTGCTAC 60.093 50.000 20.16 0.00 44.55 3.58
368 369 2.187958 ACTGCAGTATGGGAAGTGCTA 58.812 47.619 20.16 0.00 44.55 3.49
369 370 0.987294 ACTGCAGTATGGGAAGTGCT 59.013 50.000 20.16 0.00 44.55 4.40
370 371 2.691409 TACTGCAGTATGGGAAGTGC 57.309 50.000 22.67 0.00 44.51 4.40
384 385 0.381801 CCCGAATGCAACCATACTGC 59.618 55.000 0.00 0.00 40.35 4.40
385 386 2.036958 TCCCGAATGCAACCATACTG 57.963 50.000 0.00 0.00 0.00 2.74
386 387 3.297134 AATCCCGAATGCAACCATACT 57.703 42.857 0.00 0.00 0.00 2.12
387 388 4.385825 TCTAATCCCGAATGCAACCATAC 58.614 43.478 0.00 0.00 0.00 2.39
388 389 4.698201 TCTAATCCCGAATGCAACCATA 57.302 40.909 0.00 0.00 0.00 2.74
389 390 3.576078 TCTAATCCCGAATGCAACCAT 57.424 42.857 0.00 0.00 0.00 3.55
390 391 3.576078 ATCTAATCCCGAATGCAACCA 57.424 42.857 0.00 0.00 0.00 3.67
391 392 4.918810 AAATCTAATCCCGAATGCAACC 57.081 40.909 0.00 0.00 0.00 3.77
392 393 5.650543 ACAAAATCTAATCCCGAATGCAAC 58.349 37.500 0.00 0.00 0.00 4.17
393 394 5.913137 ACAAAATCTAATCCCGAATGCAA 57.087 34.783 0.00 0.00 0.00 4.08
394 395 5.184864 ACAACAAAATCTAATCCCGAATGCA 59.815 36.000 0.00 0.00 0.00 3.96
395 396 5.650543 ACAACAAAATCTAATCCCGAATGC 58.349 37.500 0.00 0.00 0.00 3.56
396 397 9.072294 GTTTACAACAAAATCTAATCCCGAATG 57.928 33.333 0.00 0.00 0.00 2.67
397 398 9.020731 AGTTTACAACAAAATCTAATCCCGAAT 57.979 29.630 0.00 0.00 0.00 3.34
398 399 8.398878 AGTTTACAACAAAATCTAATCCCGAA 57.601 30.769 0.00 0.00 0.00 4.30
399 400 7.989416 AGTTTACAACAAAATCTAATCCCGA 57.011 32.000 0.00 0.00 0.00 5.14
400 401 7.540745 CCAAGTTTACAACAAAATCTAATCCCG 59.459 37.037 0.00 0.00 0.00 5.14
401 402 7.330946 GCCAAGTTTACAACAAAATCTAATCCC 59.669 37.037 0.00 0.00 0.00 3.85
402 403 7.870445 TGCCAAGTTTACAACAAAATCTAATCC 59.130 33.333 0.00 0.00 0.00 3.01
403 404 8.810652 TGCCAAGTTTACAACAAAATCTAATC 57.189 30.769 0.00 0.00 0.00 1.75
404 405 9.777297 AATGCCAAGTTTACAACAAAATCTAAT 57.223 25.926 0.00 0.00 0.00 1.73
405 406 9.039870 CAATGCCAAGTTTACAACAAAATCTAA 57.960 29.630 0.00 0.00 0.00 2.10
406 407 7.655328 CCAATGCCAAGTTTACAACAAAATCTA 59.345 33.333 0.00 0.00 0.00 1.98
407 408 6.482973 CCAATGCCAAGTTTACAACAAAATCT 59.517 34.615 0.00 0.00 0.00 2.40
408 409 6.657888 CCAATGCCAAGTTTACAACAAAATC 58.342 36.000 0.00 0.00 0.00 2.17
409 410 5.008514 GCCAATGCCAAGTTTACAACAAAAT 59.991 36.000 0.00 0.00 0.00 1.82
410 411 4.333926 GCCAATGCCAAGTTTACAACAAAA 59.666 37.500 0.00 0.00 0.00 2.44
411 412 3.873952 GCCAATGCCAAGTTTACAACAAA 59.126 39.130 0.00 0.00 0.00 2.83
412 413 3.133721 AGCCAATGCCAAGTTTACAACAA 59.866 39.130 0.00 0.00 38.69 2.83
413 414 2.697751 AGCCAATGCCAAGTTTACAACA 59.302 40.909 0.00 0.00 38.69 3.33
414 415 3.059166 CAGCCAATGCCAAGTTTACAAC 58.941 45.455 0.00 0.00 38.69 3.32
415 416 2.961741 TCAGCCAATGCCAAGTTTACAA 59.038 40.909 0.00 0.00 38.69 2.41
416 417 2.557924 CTCAGCCAATGCCAAGTTTACA 59.442 45.455 0.00 0.00 38.69 2.41
417 418 2.819608 TCTCAGCCAATGCCAAGTTTAC 59.180 45.455 0.00 0.00 38.69 2.01
418 419 3.153369 TCTCAGCCAATGCCAAGTTTA 57.847 42.857 0.00 0.00 38.69 2.01
419 420 1.999648 TCTCAGCCAATGCCAAGTTT 58.000 45.000 0.00 0.00 38.69 2.66
420 421 1.891150 CTTCTCAGCCAATGCCAAGTT 59.109 47.619 0.00 0.00 38.69 2.66
421 422 1.542492 CTTCTCAGCCAATGCCAAGT 58.458 50.000 0.00 0.00 38.69 3.16
422 423 0.172803 GCTTCTCAGCCAATGCCAAG 59.827 55.000 0.00 0.00 40.61 3.61
423 424 2.269978 GCTTCTCAGCCAATGCCAA 58.730 52.632 0.00 0.00 40.61 4.52
424 425 4.007457 GCTTCTCAGCCAATGCCA 57.993 55.556 0.00 0.00 40.61 4.92
432 433 1.153667 CTCACGGAGGCTTCTCAGC 60.154 63.158 0.00 0.00 46.52 4.26
433 434 1.464734 TACTCACGGAGGCTTCTCAG 58.535 55.000 0.00 0.00 39.23 3.35
434 435 1.919240 TTACTCACGGAGGCTTCTCA 58.081 50.000 0.00 0.00 39.23 3.27
435 436 2.427453 TCATTACTCACGGAGGCTTCTC 59.573 50.000 0.00 0.00 33.35 2.87
436 437 2.428890 CTCATTACTCACGGAGGCTTCT 59.571 50.000 0.00 0.00 33.35 2.85
437 438 2.427453 TCTCATTACTCACGGAGGCTTC 59.573 50.000 5.98 0.00 33.35 3.86
438 439 2.457598 TCTCATTACTCACGGAGGCTT 58.542 47.619 5.98 0.00 33.35 4.35
439 440 2.145397 TCTCATTACTCACGGAGGCT 57.855 50.000 5.98 0.00 33.35 4.58
440 441 2.961526 TTCTCATTACTCACGGAGGC 57.038 50.000 5.98 0.00 33.35 4.70
441 442 4.582656 AGAGATTCTCATTACTCACGGAGG 59.417 45.833 15.83 0.00 31.19 4.30
442 443 5.766150 AGAGATTCTCATTACTCACGGAG 57.234 43.478 15.83 0.03 32.40 4.63
443 444 6.531503 AAAGAGATTCTCATTACTCACGGA 57.468 37.500 15.83 0.00 32.06 4.69
444 445 7.547370 AGAAAAAGAGATTCTCATTACTCACGG 59.453 37.037 15.83 0.00 31.61 4.94
445 446 8.472683 AGAAAAAGAGATTCTCATTACTCACG 57.527 34.615 15.83 0.00 31.61 4.35
456 457 3.703001 TGCGGGAGAAAAAGAGATTCT 57.297 42.857 0.00 0.00 39.76 2.40
457 458 4.766404 TTTGCGGGAGAAAAAGAGATTC 57.234 40.909 0.00 0.00 33.52 2.52
479 480 9.987272 CCTTCTCCTCAATTGTTTAAGATTTTT 57.013 29.630 5.13 0.00 0.00 1.94
480 481 9.147732 ACCTTCTCCTCAATTGTTTAAGATTTT 57.852 29.630 5.13 0.00 0.00 1.82
481 482 8.712228 ACCTTCTCCTCAATTGTTTAAGATTT 57.288 30.769 5.13 0.00 0.00 2.17
482 483 8.712228 AACCTTCTCCTCAATTGTTTAAGATT 57.288 30.769 5.13 0.00 0.00 2.40
483 484 7.944554 TGAACCTTCTCCTCAATTGTTTAAGAT 59.055 33.333 5.13 0.00 0.00 2.40
484 485 7.287061 TGAACCTTCTCCTCAATTGTTTAAGA 58.713 34.615 5.13 2.37 0.00 2.10
485 486 7.510549 TGAACCTTCTCCTCAATTGTTTAAG 57.489 36.000 5.13 4.06 0.00 1.85
486 487 7.889873 TTGAACCTTCTCCTCAATTGTTTAA 57.110 32.000 5.13 0.00 0.00 1.52
487 488 7.889873 TTTGAACCTTCTCCTCAATTGTTTA 57.110 32.000 5.13 0.00 0.00 2.01
488 489 6.790232 TTTGAACCTTCTCCTCAATTGTTT 57.210 33.333 5.13 0.00 0.00 2.83
489 490 6.154363 TGTTTTGAACCTTCTCCTCAATTGTT 59.846 34.615 5.13 0.00 0.00 2.83
490 491 5.656416 TGTTTTGAACCTTCTCCTCAATTGT 59.344 36.000 5.13 0.00 0.00 2.71
491 492 6.147864 TGTTTTGAACCTTCTCCTCAATTG 57.852 37.500 0.00 0.00 0.00 2.32
492 493 6.790232 TTGTTTTGAACCTTCTCCTCAATT 57.210 33.333 0.00 0.00 0.00 2.32
493 494 6.790232 TTTGTTTTGAACCTTCTCCTCAAT 57.210 33.333 0.00 0.00 0.00 2.57
494 495 6.597832 TTTTGTTTTGAACCTTCTCCTCAA 57.402 33.333 0.00 0.00 0.00 3.02
495 496 6.379703 TGATTTTGTTTTGAACCTTCTCCTCA 59.620 34.615 0.00 0.00 0.00 3.86
496 497 6.805713 TGATTTTGTTTTGAACCTTCTCCTC 58.194 36.000 0.00 0.00 0.00 3.71
497 498 6.183360 CCTGATTTTGTTTTGAACCTTCTCCT 60.183 38.462 0.00 0.00 0.00 3.69
498 499 5.985530 CCTGATTTTGTTTTGAACCTTCTCC 59.014 40.000 0.00 0.00 0.00 3.71
499 500 6.805713 TCCTGATTTTGTTTTGAACCTTCTC 58.194 36.000 0.00 0.00 0.00 2.87
500 501 6.790232 TCCTGATTTTGTTTTGAACCTTCT 57.210 33.333 0.00 0.00 0.00 2.85
501 502 7.763985 TCTTTCCTGATTTTGTTTTGAACCTTC 59.236 33.333 0.00 0.00 0.00 3.46
502 503 7.619965 TCTTTCCTGATTTTGTTTTGAACCTT 58.380 30.769 0.00 0.00 0.00 3.50
503 504 7.181569 TCTTTCCTGATTTTGTTTTGAACCT 57.818 32.000 0.00 0.00 0.00 3.50
504 505 7.841915 TTCTTTCCTGATTTTGTTTTGAACC 57.158 32.000 0.00 0.00 0.00 3.62
528 529 5.910723 CCATAGTTTGCGTAAAGTCGTTTTT 59.089 36.000 9.72 0.00 32.00 1.94
529 530 5.236911 TCCATAGTTTGCGTAAAGTCGTTTT 59.763 36.000 9.72 0.00 32.00 2.43
530 531 4.751098 TCCATAGTTTGCGTAAAGTCGTTT 59.249 37.500 9.72 0.00 32.00 3.60
531 532 4.151157 GTCCATAGTTTGCGTAAAGTCGTT 59.849 41.667 9.72 0.00 32.00 3.85
532 533 3.676646 GTCCATAGTTTGCGTAAAGTCGT 59.323 43.478 9.72 0.00 32.00 4.34
533 534 3.924686 AGTCCATAGTTTGCGTAAAGTCG 59.075 43.478 9.72 3.29 32.00 4.18
534 535 5.638234 AGAAGTCCATAGTTTGCGTAAAGTC 59.362 40.000 9.72 0.00 32.00 3.01
535 536 5.548406 AGAAGTCCATAGTTTGCGTAAAGT 58.452 37.500 11.17 11.17 34.04 2.66
536 537 6.481954 AAGAAGTCCATAGTTTGCGTAAAG 57.518 37.500 0.00 0.00 0.00 1.85
537 538 6.483974 TGAAAGAAGTCCATAGTTTGCGTAAA 59.516 34.615 0.00 0.00 0.00 2.01
538 539 5.992829 TGAAAGAAGTCCATAGTTTGCGTAA 59.007 36.000 0.00 0.00 0.00 3.18
539 540 5.543714 TGAAAGAAGTCCATAGTTTGCGTA 58.456 37.500 0.00 0.00 0.00 4.42
540 541 4.385825 TGAAAGAAGTCCATAGTTTGCGT 58.614 39.130 0.00 0.00 0.00 5.24
541 542 5.356882 TTGAAAGAAGTCCATAGTTTGCG 57.643 39.130 0.00 0.00 0.00 4.85
571 572 9.877178 GGATTTAACATATCCACTCCACTATAG 57.123 37.037 0.00 0.00 41.05 1.31
572 573 9.387397 TGGATTTAACATATCCACTCCACTATA 57.613 33.333 3.63 0.00 45.02 1.31
573 574 8.275187 TGGATTTAACATATCCACTCCACTAT 57.725 34.615 3.63 0.00 45.02 2.12
574 575 7.684317 TGGATTTAACATATCCACTCCACTA 57.316 36.000 3.63 0.00 45.02 2.74
575 576 6.575244 TGGATTTAACATATCCACTCCACT 57.425 37.500 3.63 0.00 45.02 4.00
583 584 8.974060 TTACTCACCTTGGATTTAACATATCC 57.026 34.615 0.00 0.00 41.63 2.59
614 615 4.436998 GAGTCCCAGCGTGGTCGG 62.437 72.222 3.82 0.00 35.17 4.79
692 695 3.181520 GCTTTAGGATGTAAGTGTGCACG 60.182 47.826 13.13 0.00 36.20 5.34
723 727 3.654414 ACTCGTCTGGTCTGAACAAATC 58.346 45.455 0.00 0.00 0.00 2.17
730 734 1.816863 GCCCAACTCGTCTGGTCTGA 61.817 60.000 0.00 0.00 31.45 3.27
733 737 0.250338 AAAGCCCAACTCGTCTGGTC 60.250 55.000 0.00 0.00 31.45 4.02
782 787 0.752376 CCGGACAGGAGGACTAGGAC 60.752 65.000 0.00 0.00 45.00 3.85
841 849 1.229336 ACTGGGTGAGGACTGAGGG 60.229 63.158 0.00 0.00 0.00 4.30
892 900 0.253327 GTAGCAAGGAAGGAGGTGGG 59.747 60.000 0.00 0.00 0.00 4.61
919 927 1.003051 AGCTTATCGGGGAGGTGGT 59.997 57.895 0.00 0.00 0.00 4.16
1029 1040 3.424105 AGCCTCAGGAATGGGGGC 61.424 66.667 0.00 0.00 42.74 5.80
1122 1133 1.923619 GCTCGCGAAGATCTTGAGC 59.076 57.895 22.99 22.99 44.37 4.26
1249 1260 4.373116 GTCGCTGAACCGCCTGGA 62.373 66.667 0.00 0.00 39.21 3.86
1261 1272 3.753434 CAGCTCCTCCACGTCGCT 61.753 66.667 0.00 0.00 0.00 4.93
1327 1338 2.862536 CGTACATCTTGATGAGCCTGTG 59.137 50.000 16.43 0.00 0.00 3.66
1580 1591 2.430610 ATCAGCGAGAGGGCCTCAC 61.431 63.158 33.86 26.79 42.06 3.51
1590 1601 1.430479 GCATCTCATCCATCAGCGAG 58.570 55.000 0.00 0.00 0.00 5.03
1597 1608 3.319135 GCTTCGGCATCTCATCCAT 57.681 52.632 0.00 0.00 41.33 3.41
1677 1688 1.526917 GAATGCCTCATCCACCCGG 60.527 63.158 0.00 0.00 0.00 5.73
1696 1707 1.202009 GCGCATTCTCTCAAACAGCTC 60.202 52.381 0.30 0.00 0.00 4.09
1731 1742 1.348276 TGTAAACAACCGTATCCGCG 58.652 50.000 0.00 0.00 0.00 6.46
1782 1793 1.690893 TCATATGCAGAGCTCACCCTC 59.309 52.381 17.77 0.20 0.00 4.30
1790 1801 4.815308 ACTTGAACAGATCATATGCAGAGC 59.185 41.667 0.00 0.00 38.03 4.09
1836 1847 4.210331 CCTGATAAGTCCCTGAATTTGGG 58.790 47.826 10.29 10.29 45.90 4.12
1839 1850 6.893020 AGTACCTGATAAGTCCCTGAATTT 57.107 37.500 0.00 0.00 0.00 1.82
1875 1886 2.426738 CACAAACTTCTTTGAGGCCACA 59.573 45.455 5.01 0.25 39.43 4.17
1881 1892 2.031682 CGCCTCCACAAACTTCTTTGAG 60.032 50.000 0.27 0.00 39.43 3.02
1915 1926 3.133721 AGACCTTCAGCACTCATCATACC 59.866 47.826 0.00 0.00 0.00 2.73
1916 1927 4.118410 CAGACCTTCAGCACTCATCATAC 58.882 47.826 0.00 0.00 0.00 2.39
2079 2090 8.625786 ATCATACATTTCAGCATAAGCATGTA 57.374 30.769 4.08 4.08 45.49 2.29
2080 2091 6.947644 TCATACATTTCAGCATAAGCATGT 57.052 33.333 0.00 0.00 45.49 3.21
2082 2093 7.754851 TGATCATACATTTCAGCATAAGCAT 57.245 32.000 0.00 0.00 45.49 3.79
2084 2095 6.527023 GCATGATCATACATTTCAGCATAAGC 59.473 38.462 8.15 0.00 42.56 3.09
2085 2096 7.027760 GGCATGATCATACATTTCAGCATAAG 58.972 38.462 8.15 0.00 0.00 1.73
2116 2127 1.071699 TCAGGTCCACTAAACCACTGC 59.928 52.381 0.00 0.00 39.39 4.40
2117 2128 2.104111 TGTCAGGTCCACTAAACCACTG 59.896 50.000 0.00 0.00 39.39 3.66
2118 2129 2.404559 TGTCAGGTCCACTAAACCACT 58.595 47.619 0.00 0.00 39.39 4.00
2119 2130 2.922740 TGTCAGGTCCACTAAACCAC 57.077 50.000 0.00 0.00 39.39 4.16
2120 2131 4.348461 TGTATTGTCAGGTCCACTAAACCA 59.652 41.667 0.00 0.00 39.39 3.67
2121 2132 4.694037 GTGTATTGTCAGGTCCACTAAACC 59.306 45.833 0.00 0.00 37.03 3.27
2122 2133 5.548406 AGTGTATTGTCAGGTCCACTAAAC 58.452 41.667 0.00 0.00 31.80 2.01
2168 2179 1.610886 GGTTGGTCCACTAGTTCCAGC 60.611 57.143 13.29 13.29 35.97 4.85
2249 2260 6.148811 GTCATCGTGAGACCAAAAATCCTTAA 59.851 38.462 0.00 0.00 46.97 1.85
2250 2261 5.642063 GTCATCGTGAGACCAAAAATCCTTA 59.358 40.000 0.00 0.00 46.97 2.69
2251 2262 4.455877 GTCATCGTGAGACCAAAAATCCTT 59.544 41.667 0.00 0.00 46.97 3.36
2253 2264 4.342352 GTCATCGTGAGACCAAAAATCC 57.658 45.455 0.00 0.00 46.97 3.01
2370 2381 0.604073 TTCCCTGTGCATCGAACGTA 59.396 50.000 0.00 0.00 0.00 3.57
2371 2382 0.670546 CTTCCCTGTGCATCGAACGT 60.671 55.000 0.00 0.00 0.00 3.99
2442 3287 6.998258 ACATCGTATATAAACGTTGCCTAC 57.002 37.500 0.00 1.26 43.16 3.18
2473 3318 5.067805 CAGGGACAAAACCAATAATAGGCTC 59.932 44.000 0.00 0.00 0.00 4.70
2514 3359 1.067295 AACTGGAGAATGTGGAGCCA 58.933 50.000 0.00 0.00 0.00 4.75
2570 3415 8.307483 TGTTGGATTTGAGTTGTAACAAAAGAA 58.693 29.630 0.00 0.00 39.01 2.52
2599 3444 6.870439 TCACATGTCAGACATACAAAAGAGAG 59.130 38.462 15.98 2.52 36.53 3.20
2600 3445 6.758254 TCACATGTCAGACATACAAAAGAGA 58.242 36.000 15.98 4.33 36.53 3.10
2601 3446 7.425577 TTCACATGTCAGACATACAAAAGAG 57.574 36.000 15.98 3.92 36.53 2.85
2602 3447 7.800155 TTTCACATGTCAGACATACAAAAGA 57.200 32.000 15.98 5.43 36.53 2.52
2670 3515 5.904169 TCCAGAGAGAATCATCAGAAGGATT 59.096 40.000 1.34 1.34 38.55 3.01
2695 3540 4.202050 GCCTGGTTTTCAATAGCAGTATGG 60.202 45.833 6.34 0.00 38.99 2.74
2696 3541 4.398988 TGCCTGGTTTTCAATAGCAGTATG 59.601 41.667 6.34 0.00 38.99 2.39
2697 3542 4.599041 TGCCTGGTTTTCAATAGCAGTAT 58.401 39.130 6.34 0.00 38.99 2.12
2729 3574 1.688772 ACCTCATGGCATGCATCTTC 58.311 50.000 22.56 1.47 36.63 2.87
2851 3696 5.357032 AGTCAACCAACGAAAGAGAAAACAT 59.643 36.000 0.00 0.00 0.00 2.71
2852 3697 4.698304 AGTCAACCAACGAAAGAGAAAACA 59.302 37.500 0.00 0.00 0.00 2.83
2853 3698 5.231265 AGTCAACCAACGAAAGAGAAAAC 57.769 39.130 0.00 0.00 0.00 2.43
2865 3710 9.874215 GACTAGTTAAACAATTAGTCAACCAAC 57.126 33.333 12.49 0.00 39.98 3.77
3017 3882 7.325338 CGAAATCTACGACAACTTGAGTAAAGA 59.675 37.037 0.00 0.00 39.38 2.52
3032 3897 7.092137 TCTTATCTTGGAACGAAATCTACGA 57.908 36.000 0.00 0.00 34.70 3.43
3037 3902 9.118236 CACTTTTTCTTATCTTGGAACGAAATC 57.882 33.333 0.00 0.00 0.00 2.17
3040 3905 7.497909 ACTCACTTTTTCTTATCTTGGAACGAA 59.502 33.333 0.00 0.00 0.00 3.85
3046 3911 7.693969 ATGGACTCACTTTTTCTTATCTTGG 57.306 36.000 0.00 0.00 0.00 3.61
3102 3967 5.405269 TCATGAACACACGTCTATTCACTTG 59.595 40.000 6.96 4.14 34.08 3.16
3202 4067 9.216117 GTAAGACAGGTACTTGATTTGTTGTAT 57.784 33.333 12.54 0.00 34.60 2.29
3263 4128 0.969149 ACGAATCTCACTGCAGTCCA 59.031 50.000 18.64 5.54 0.00 4.02
3309 4174 4.332428 AAGTACTGTTTAGACGGCAGTT 57.668 40.909 0.00 0.00 42.60 3.16
3388 4256 4.553429 GCATCAAGACGGTAAAATTTGTCG 59.447 41.667 0.00 0.00 36.49 4.35
3407 4275 2.850647 GCTTTGCTTTTCTCGATGCATC 59.149 45.455 17.10 17.10 35.27 3.91
3411 4279 5.403166 TGAAATTGCTTTGCTTTTCTCGATG 59.597 36.000 14.45 0.00 34.77 3.84
3492 4361 7.707035 AGTTACTAGACATAAGAATTGCCTTCG 59.293 37.037 0.00 0.00 38.98 3.79
3603 4472 0.322816 TGGGCATCTCAAGCAACTCC 60.323 55.000 0.00 0.00 0.00 3.85
3620 4489 3.463944 AGTGTTTAGGAAACGTGTCTGG 58.536 45.455 5.55 0.00 44.28 3.86
3667 4544 9.393249 CGCTTTCTTCTGAATTTGTTACATTTA 57.607 29.630 0.00 0.00 31.56 1.40
3697 4587 3.319755 CGAACGGTAAGCTAGAAAACCA 58.680 45.455 0.00 0.00 32.04 3.67
3698 4588 2.093310 GCGAACGGTAAGCTAGAAAACC 59.907 50.000 0.00 0.00 0.00 3.27
3714 4604 6.988580 AGTAGTACCCCAAATAATTAGCGAAC 59.011 38.462 0.00 0.00 0.00 3.95
3797 4687 1.333177 CTGGCTAGCTAGTACCCCAG 58.667 60.000 22.86 22.86 34.54 4.45
3897 4788 6.823689 TCTTTAGTTCCTATTGACAATCAGGC 59.176 38.462 3.36 0.11 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.