Multiple sequence alignment - TraesCS2A01G458800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G458800 chr2A 100.000 4251 0 0 1 4251 706203677 706199427 0.000000e+00 7851.0
1 TraesCS2A01G458800 chr2A 84.833 389 52 5 1330 1714 706002411 706002026 6.670000e-103 385.0
2 TraesCS2A01G458800 chr2A 77.964 717 70 36 3118 3792 705926764 705926094 6.720000e-98 368.0
3 TraesCS2A01G458800 chr2A 81.535 482 55 23 1861 2323 196308217 196307751 2.420000e-97 366.0
4 TraesCS2A01G458800 chr2A 91.628 215 15 2 3114 3327 706001076 706000864 1.160000e-75 294.0
5 TraesCS2A01G458800 chr2A 86.822 258 24 8 907 1159 705936264 705936012 3.240000e-71 279.0
6 TraesCS2A01G458800 chr2A 100.000 149 0 0 1631 1779 706201897 706201749 4.190000e-70 276.0
7 TraesCS2A01G458800 chr2A 100.000 149 0 0 1781 1929 706202047 706201899 4.190000e-70 276.0
8 TraesCS2A01G458800 chr2A 76.682 446 54 31 742 1159 706003079 706002656 7.210000e-48 202.0
9 TraesCS2A01G458800 chr2A 78.431 357 41 16 2742 3095 706001855 706001532 2.590000e-47 200.0
10 TraesCS2A01G458800 chr2A 91.026 78 7 0 2617 2694 706200810 706200733 5.810000e-19 106.0
11 TraesCS2A01G458800 chr2A 91.026 78 7 0 2868 2945 706201061 706200984 5.810000e-19 106.0
12 TraesCS2A01G458800 chr2D 88.806 1733 89 37 2455 4171 565861637 565859994 0.000000e+00 2028.0
13 TraesCS2A01G458800 chr2D 88.200 1322 75 41 494 1779 565863521 565862245 0.000000e+00 1502.0
14 TraesCS2A01G458800 chr2D 82.018 1090 108 44 1 1054 565874613 565873576 0.000000e+00 846.0
15 TraesCS2A01G458800 chr2D 86.111 468 39 15 3118 3573 565590605 565590152 8.270000e-132 481.0
16 TraesCS2A01G458800 chr2D 76.223 1022 114 64 2536 3505 642782796 642783740 5.080000e-114 422.0
17 TraesCS2A01G458800 chr2D 78.661 717 78 37 1808 2496 565862366 565861697 1.420000e-109 407.0
18 TraesCS2A01G458800 chr2D 83.441 465 39 20 3107 3565 565694777 565694345 8.560000e-107 398.0
19 TraesCS2A01G458800 chr2D 83.710 442 44 19 1895 2328 565862072 565861651 3.980000e-105 392.0
20 TraesCS2A01G458800 chr2D 86.711 301 40 0 1329 1629 565760581 565760281 6.810000e-88 335.0
21 TraesCS2A01G458800 chr2D 86.379 301 36 3 1343 1643 642782338 642782633 1.470000e-84 324.0
22 TraesCS2A01G458800 chr2D 91.705 217 15 2 3112 3327 565758807 565758593 8.940000e-77 298.0
23 TraesCS2A01G458800 chr2D 81.875 320 44 4 3 309 543288431 543288749 1.520000e-64 257.0
24 TraesCS2A01G458800 chr2D 82.188 320 30 11 2770 3083 642782802 642783100 2.540000e-62 250.0
25 TraesCS2A01G458800 chr2D 81.270 315 33 11 2782 3095 565862067 565861778 9.190000e-57 231.0
26 TraesCS2A01G458800 chr2D 88.398 181 16 5 949 1126 565695841 565695663 3.330000e-51 213.0
27 TraesCS2A01G458800 chr2D 76.596 470 59 23 2636 3095 565760036 565759608 1.200000e-50 211.0
28 TraesCS2A01G458800 chr2D 78.963 347 42 17 2774 3108 565759204 565758877 1.550000e-49 207.0
29 TraesCS2A01G458800 chr2D 83.408 223 28 8 936 1152 565761072 565760853 9.320000e-47 198.0
30 TraesCS2A01G458800 chr2D 82.353 187 18 11 2914 3095 565861637 565861461 9.520000e-32 148.0
31 TraesCS2A01G458800 chr2D 80.745 161 18 4 2542 2691 565759207 565759049 3.470000e-21 113.0
32 TraesCS2A01G458800 chr2D 85.417 96 8 4 1873 1963 565694953 565694859 1.260000e-15 95.3
33 TraesCS2A01G458800 chr2D 75.845 207 35 11 1861 2061 565861896 565861699 1.630000e-14 91.6
34 TraesCS2A01G458800 chr2D 92.982 57 3 1 4188 4244 565860008 565859953 9.800000e-12 82.4
35 TraesCS2A01G458800 chr2D 93.478 46 3 0 1819 1864 565760269 565760224 7.630000e-08 69.4
36 TraesCS2A01G458800 chr2D 93.478 46 3 0 1669 1714 565760269 565760224 7.630000e-08 69.4
37 TraesCS2A01G458800 chr2B 87.904 1298 71 35 494 1763 678200459 678199220 0.000000e+00 1448.0
38 TraesCS2A01G458800 chr2B 91.768 984 34 19 1808 2755 678199329 678198357 0.000000e+00 1325.0
39 TraesCS2A01G458800 chr2B 90.191 734 37 21 2850 3565 678198345 678197629 0.000000e+00 924.0
40 TraesCS2A01G458800 chr2B 85.455 495 54 13 1 480 678200935 678200444 2.280000e-137 499.0
41 TraesCS2A01G458800 chr2B 84.382 461 26 20 3116 3565 678068691 678068266 1.100000e-110 411.0
42 TraesCS2A01G458800 chr2B 84.439 392 51 6 1330 1714 678089519 678089131 1.120000e-100 377.0
43 TraesCS2A01G458800 chr2B 84.514 381 48 8 1342 1714 677954089 677954466 2.420000e-97 366.0
44 TraesCS2A01G458800 chr2B 78.775 457 56 24 727 1159 678090196 678089757 7.010000e-68 268.0
45 TraesCS2A01G458800 chr2B 75.074 678 98 41 1844 2481 678199069 678198423 2.540000e-62 250.0
46 TraesCS2A01G458800 chr2B 86.383 235 16 6 3608 3829 677959853 677960084 4.250000e-60 243.0
47 TraesCS2A01G458800 chr2B 73.362 916 126 59 2084 2942 678199275 678198421 9.190000e-57 231.0
48 TraesCS2A01G458800 chr2B 79.942 344 41 14 2774 3108 678088938 678088614 1.190000e-55 228.0
49 TraesCS2A01G458800 chr2B 85.268 224 19 6 904 1126 678070247 678070037 7.160000e-53 219.0
50 TraesCS2A01G458800 chr2B 75.302 579 76 39 616 1163 677953313 677953855 9.260000e-52 215.0
51 TraesCS2A01G458800 chr2B 84.255 235 20 6 3608 3829 678036221 678035991 3.330000e-51 213.0
52 TraesCS2A01G458800 chr2B 79.365 315 41 12 2771 3077 677955458 677955756 2.590000e-47 200.0
53 TraesCS2A01G458800 chr2B 88.742 151 9 2 3685 3829 678080948 678080800 1.210000e-40 178.0
54 TraesCS2A01G458800 chr2B 75.333 300 52 14 1900 2188 677955469 677955757 1.600000e-24 124.0
55 TraesCS2A01G458800 chr2B 92.000 75 6 0 2617 2691 677955542 677955616 5.810000e-19 106.0
56 TraesCS2A01G458800 chr2B 75.000 296 34 18 2617 2905 678088857 678088595 2.700000e-17 100.0
57 TraesCS2A01G458800 chr2B 89.744 78 8 0 2617 2694 678198326 678198249 2.700000e-17 100.0
58 TraesCS2A01G458800 chr2B 97.619 42 1 0 4210 4251 677963191 677963232 5.900000e-09 73.1
59 TraesCS2A01G458800 chr4A 81.950 482 53 23 1861 2323 586665101 586664635 1.120000e-100 377.0
60 TraesCS2A01G458800 chr4A 81.535 482 55 23 1861 2323 590626615 590627081 2.420000e-97 366.0
61 TraesCS2A01G458800 chr4A 83.446 296 35 11 28 310 656849659 656849365 3.260000e-66 263.0
62 TraesCS2A01G458800 chr4A 83.108 296 36 11 28 310 656847939 656847645 1.520000e-64 257.0
63 TraesCS2A01G458800 chr4A 81.388 317 45 7 1 304 29055705 29055390 3.280000e-61 246.0
64 TraesCS2A01G458800 chr4A 78.161 348 51 16 2746 3082 590626617 590626950 9.320000e-47 198.0
65 TraesCS2A01G458800 chr4A 77.681 345 52 16 2749 3082 586665096 586664766 2.020000e-43 187.0
66 TraesCS2A01G458800 chr1A 81.705 481 55 23 1861 2323 512281504 512281969 1.870000e-98 370.0
67 TraesCS2A01G458800 chr1A 85.340 191 22 6 109 297 560253134 560252948 4.340000e-45 193.0
68 TraesCS2A01G458800 chr3A 81.535 482 55 23 1861 2323 37766940 37767406 2.420000e-97 366.0
69 TraesCS2A01G458800 chr3A 77.586 348 53 16 2746 3082 37766942 37767275 2.020000e-43 187.0
70 TraesCS2A01G458800 chr5B 81.405 484 54 23 1861 2323 622318436 622318904 3.120000e-96 363.0
71 TraesCS2A01G458800 chr5B 78.000 350 50 18 2746 3082 546012439 546012774 1.210000e-45 195.0
72 TraesCS2A01G458800 chr5B 77.429 350 52 18 2746 3082 622279778 622280113 2.610000e-42 183.0
73 TraesCS2A01G458800 chr6B 81.031 485 54 27 1861 2323 616364846 616365314 6.760000e-93 351.0
74 TraesCS2A01G458800 chr6B 77.429 350 52 18 2746 3082 696464028 696464363 2.610000e-42 183.0
75 TraesCS2A01G458800 chrUn 83.230 322 40 8 1 309 143844669 143844989 2.500000e-72 283.0
76 TraesCS2A01G458800 chrUn 82.085 307 41 9 19 312 41275502 41275807 2.540000e-62 250.0
77 TraesCS2A01G458800 chrUn 86.047 129 18 0 1382 1510 478858014 478857886 5.730000e-29 139.0
78 TraesCS2A01G458800 chr3D 83.175 315 39 4 3 304 85594613 85594300 4.190000e-70 276.0
79 TraesCS2A01G458800 chr6D 82.462 325 39 9 3 312 402354968 402354647 7.010000e-68 268.0
80 TraesCS2A01G458800 chr1B 81.329 316 42 11 3 305 117269071 117269382 1.530000e-59 241.0
81 TraesCS2A01G458800 chr1B 86.441 177 20 4 137 312 645567866 645568039 1.560000e-44 191.0
82 TraesCS2A01G458800 chr1B 84.925 199 17 5 2455 2645 3844569 3844762 5.610000e-44 189.0
83 TraesCS2A01G458800 chr1B 89.423 104 10 1 1 103 645531702 645531805 3.450000e-26 130.0
84 TraesCS2A01G458800 chr7D 80.757 317 46 10 1 304 597504483 597504169 2.560000e-57 233.0
85 TraesCS2A01G458800 chr7D 87.387 111 11 2 1 108 481287317 481287207 1.600000e-24 124.0
86 TraesCS2A01G458800 chr7A 80.186 323 49 7 3 312 712306435 712306115 1.190000e-55 228.0
87 TraesCS2A01G458800 chr4B 77.714 350 51 18 2746 3082 106582491 106582826 5.610000e-44 189.0
88 TraesCS2A01G458800 chr4B 88.281 128 14 1 1369 1495 459947034 459946907 7.360000e-33 152.0
89 TraesCS2A01G458800 chr1D 80.769 234 29 11 1 220 315615818 315615587 7.310000e-38 169.0
90 TraesCS2A01G458800 chr3B 78.889 270 33 15 2749 3006 172153172 172152915 1.220000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G458800 chr2A 706199427 706203677 4250 True 1723.000000 7851 96.410400 1 4251 5 chr2A.!!$R5 4250
1 TraesCS2A01G458800 chr2A 705926094 705926764 670 True 368.000000 368 77.964000 3118 3792 1 chr2A.!!$R2 674
2 TraesCS2A01G458800 chr2A 706000864 706003079 2215 True 270.250000 385 82.893500 742 3327 4 chr2A.!!$R4 2585
3 TraesCS2A01G458800 chr2D 565873576 565874613 1037 True 846.000000 846 82.018000 1 1054 1 chr2D.!!$R2 1053
4 TraesCS2A01G458800 chr2D 565859953 565863521 3568 True 610.250000 2028 83.978375 494 4244 8 chr2D.!!$R5 3750
5 TraesCS2A01G458800 chr2D 642782338 642783740 1402 False 332.000000 422 81.596667 1343 3505 3 chr2D.!!$F2 2162
6 TraesCS2A01G458800 chr2D 565694345 565695841 1496 True 235.433333 398 85.752000 949 3565 3 chr2D.!!$R3 2616
7 TraesCS2A01G458800 chr2B 678197629 678200935 3306 True 682.428571 1448 84.785429 1 3565 7 chr2B.!!$R5 3564
8 TraesCS2A01G458800 chr2B 678068266 678070247 1981 True 315.000000 411 84.825000 904 3565 2 chr2B.!!$R3 2661
9 TraesCS2A01G458800 chr2B 678088595 678090196 1601 True 243.250000 377 79.539000 727 3108 4 chr2B.!!$R4 2381
10 TraesCS2A01G458800 chr2B 677953313 677955757 2444 False 202.200000 366 81.302800 616 3077 5 chr2B.!!$F1 2461
11 TraesCS2A01G458800 chr4A 656847645 656849659 2014 True 260.000000 263 83.277000 28 310 2 chr4A.!!$R3 282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 995 0.107459 GCTCCCATTCTCACCAGTCC 60.107 60.0 0.0 0.0 0.00 3.85 F
1463 2130 0.456312 GCCGACTACAACGTCCAGAG 60.456 60.0 0.0 0.0 0.00 3.35 F
2191 3517 0.033796 ATCCCTGTGTGGCTTGGATG 60.034 55.0 0.0 0.0 34.59 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 2625 0.107459 GGCATCCAGAGTTCCAGACC 60.107 60.0 0.0 0.0 0.00 3.85 R
2977 4714 0.028505 GCTTGTGCCATGCATAGACG 59.971 55.0 0.0 0.0 41.91 4.18 R
3858 6316 0.108424 CTCAACTTCTCTCAGGCCGG 60.108 60.0 0.0 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.783111 GTAACCAAAGGAACGAAGACG 57.217 47.619 0.00 0.00 45.75 4.18
45 46 8.028938 CGAACAAAAACTGGATCCAAATAGATT 58.971 33.333 17.00 5.22 0.00 2.40
49 50 9.880157 CAAAAACTGGATCCAAATAGATTCATT 57.120 29.630 17.00 0.00 31.21 2.57
95 97 2.496111 GAGATCCGACGGAGATACACT 58.504 52.381 22.99 13.15 34.05 3.55
102 104 2.099263 CGACGGAGATACACTTCCACAT 59.901 50.000 0.00 0.00 0.00 3.21
103 105 3.707793 GACGGAGATACACTTCCACATC 58.292 50.000 0.00 0.00 0.00 3.06
104 106 2.431057 ACGGAGATACACTTCCACATCC 59.569 50.000 0.00 0.00 0.00 3.51
105 107 2.695666 CGGAGATACACTTCCACATCCT 59.304 50.000 0.00 0.00 0.00 3.24
107 109 3.070302 GGAGATACACTTCCACATCCTCC 59.930 52.174 0.00 0.00 0.00 4.30
111 125 2.625639 ACACTTCCACATCCTCCTTCT 58.374 47.619 0.00 0.00 0.00 2.85
140 154 2.475466 GCGACGATAGGACGTGGGA 61.475 63.158 0.00 0.00 46.52 4.37
152 166 2.864343 GGACGTGGGAAGACATTATTCG 59.136 50.000 0.00 0.00 0.00 3.34
179 193 4.408821 ACATCGCCACCGCCACAT 62.409 61.111 0.00 0.00 0.00 3.21
253 268 2.367377 TGGGGGCCTGAGATCCTG 60.367 66.667 0.84 0.00 0.00 3.86
267 282 4.988598 CCTGCGCACCTCCACGTT 62.989 66.667 5.66 0.00 0.00 3.99
271 286 2.738521 CGCACCTCCACGTTCCAG 60.739 66.667 0.00 0.00 0.00 3.86
275 290 3.793060 CCTCCACGTTCCAGAGGT 58.207 61.111 10.98 0.00 41.96 3.85
441 456 8.600449 TCAAATGTTTCTTTTGACACAACTTT 57.400 26.923 6.68 0.00 41.70 2.66
442 457 9.698309 TCAAATGTTTCTTTTGACACAACTTTA 57.302 25.926 6.68 0.00 41.70 1.85
480 495 6.394025 TTTGTCGCAAGTTACCCTATTTTT 57.606 33.333 0.00 0.00 39.48 1.94
513 528 4.081322 ACAAGTTACCCTGTTTCGACAT 57.919 40.909 0.00 0.00 0.00 3.06
519 534 6.996509 AGTTACCCTGTTTCGACATAACTAA 58.003 36.000 0.60 0.00 31.39 2.24
521 536 4.251268 ACCCTGTTTCGACATAACTAAGC 58.749 43.478 0.60 0.00 0.00 3.09
532 547 5.583061 CGACATAACTAAGCCACCATTTGTA 59.417 40.000 0.00 0.00 0.00 2.41
534 549 7.153217 ACATAACTAAGCCACCATTTGTAAC 57.847 36.000 0.00 0.00 0.00 2.50
540 556 8.240267 ACTAAGCCACCATTTGTAACTTTTAA 57.760 30.769 0.00 0.00 0.00 1.52
676 702 4.451096 TGCGAAGTAATTTCCACAAGAGTC 59.549 41.667 0.00 0.00 31.82 3.36
683 709 4.543590 ATTTCCACAAGAGTCAGACGAT 57.456 40.909 0.00 0.00 0.00 3.73
695 721 8.640291 CAAGAGTCAGACGATCTTACTTTTAAC 58.360 37.037 5.05 0.00 31.62 2.01
731 768 5.242838 TCAGGTTTGGAAATAATGAAAGCGT 59.757 36.000 0.00 0.00 32.41 5.07
732 769 5.345741 CAGGTTTGGAAATAATGAAAGCGTG 59.654 40.000 0.00 0.00 32.41 5.34
740 777 4.778842 ATAATGAAAGCGTGCTTAGACG 57.221 40.909 7.64 0.00 42.42 4.18
750 787 0.978151 TGCTTAGACGTTGGGCCTTA 59.022 50.000 4.53 0.00 0.00 2.69
765 802 3.189618 GCCTTAAATGGGCTACTACGT 57.810 47.619 0.00 0.00 45.57 3.57
766 803 4.326504 GCCTTAAATGGGCTACTACGTA 57.673 45.455 0.00 0.00 45.57 3.57
785 822 1.032657 ATGTAGAGAGTGACCGCGCT 61.033 55.000 5.56 0.00 37.63 5.92
788 825 4.427661 GAGAGTGACCGCGCTGCT 62.428 66.667 5.56 0.00 34.37 4.24
804 844 3.578272 CTCTCCTCCGACCGAGCG 61.578 72.222 0.00 0.00 37.27 5.03
827 878 4.821589 CTTCGCGGCCCTCACTCC 62.822 72.222 6.13 0.00 0.00 3.85
896 947 3.905678 CACTCGGCCGCTCCCTAG 61.906 72.222 23.51 14.50 0.00 3.02
940 992 1.817099 GCGCTCCCATTCTCACCAG 60.817 63.158 0.00 0.00 0.00 4.00
941 993 1.599047 CGCTCCCATTCTCACCAGT 59.401 57.895 0.00 0.00 0.00 4.00
942 994 0.460987 CGCTCCCATTCTCACCAGTC 60.461 60.000 0.00 0.00 0.00 3.51
943 995 0.107459 GCTCCCATTCTCACCAGTCC 60.107 60.000 0.00 0.00 0.00 3.85
944 996 1.279496 CTCCCATTCTCACCAGTCCA 58.721 55.000 0.00 0.00 0.00 4.02
982 1060 1.528309 CGGGAGAGGAGAGGAGAGC 60.528 68.421 0.00 0.00 0.00 4.09
983 1061 1.528309 GGGAGAGGAGAGGAGAGCG 60.528 68.421 0.00 0.00 0.00 5.03
1109 1209 1.012486 CACGACAAGGAAGGTACGCC 61.012 60.000 0.00 0.00 0.00 5.68
1128 1258 3.003173 CTCCGCCTCCTCCCACAA 61.003 66.667 0.00 0.00 0.00 3.33
1129 1259 3.316573 CTCCGCCTCCTCCCACAAC 62.317 68.421 0.00 0.00 0.00 3.32
1130 1260 4.760047 CCGCCTCCTCCCACAACG 62.760 72.222 0.00 0.00 0.00 4.10
1239 1369 4.475944 CCTTCTTGCTTGATTTTACCACG 58.524 43.478 0.00 0.00 0.00 4.94
1277 1417 4.380841 ACATACGGTTTGATTCGCTAGA 57.619 40.909 5.58 0.00 0.00 2.43
1287 1593 4.789075 TCGCTAGACAACCGCGGC 62.789 66.667 28.58 9.08 46.23 6.53
1304 1610 2.969827 CGCGAAAAAGGGGCCAAT 59.030 55.556 4.39 0.00 0.00 3.16
1371 1755 1.133253 CGCTGTGTTGGCTTCGATG 59.867 57.895 0.00 0.00 0.00 3.84
1463 2130 0.456312 GCCGACTACAACGTCCAGAG 60.456 60.000 0.00 0.00 0.00 3.35
1613 2282 5.185454 CAAGTATGTGCTATTCCTTGGACA 58.815 41.667 0.00 0.00 38.76 4.02
1629 2298 9.753674 TTCCTTGGACAATTTCTTTCACTATAT 57.246 29.630 0.00 0.00 0.00 0.86
1646 2321 8.902540 TCACTATATACATCGATTTGCCTTTT 57.097 30.769 0.00 0.00 0.00 2.27
1647 2322 8.773645 TCACTATATACATCGATTTGCCTTTTG 58.226 33.333 0.00 0.00 0.00 2.44
1649 2324 6.959639 ATATACATCGATTTGCCTTTTGGT 57.040 33.333 0.00 0.00 42.99 3.67
1652 2327 3.057315 ACATCGATTTGCCTTTTGGTCTG 60.057 43.478 0.00 0.00 42.99 3.51
1675 2363 3.784511 ACTCTGGATGCCTATGAATGG 57.215 47.619 0.00 0.00 0.00 3.16
1735 2558 3.626670 GGATGCTGCCTATGAATGATAGC 59.373 47.826 0.00 0.00 33.72 2.97
1779 2607 3.304911 TGTTGTCTGTTCAATGGGGAA 57.695 42.857 0.00 0.00 0.00 3.97
1780 2608 3.636679 TGTTGTCTGTTCAATGGGGAAA 58.363 40.909 0.00 0.00 0.00 3.13
1781 2609 3.383185 TGTTGTCTGTTCAATGGGGAAAC 59.617 43.478 0.00 0.00 0.00 2.78
1782 2610 3.304911 TGTCTGTTCAATGGGGAAACA 57.695 42.857 0.00 0.00 0.00 2.83
1783 2611 3.843422 TGTCTGTTCAATGGGGAAACAT 58.157 40.909 0.00 0.00 0.00 2.71
1784 2612 3.826157 TGTCTGTTCAATGGGGAAACATC 59.174 43.478 0.00 0.00 0.00 3.06
1785 2613 3.081061 TCTGTTCAATGGGGAAACATCG 58.919 45.455 0.00 0.00 0.00 3.84
1786 2614 3.081061 CTGTTCAATGGGGAAACATCGA 58.919 45.455 0.00 0.00 0.00 3.59
1787 2615 3.696045 TGTTCAATGGGGAAACATCGAT 58.304 40.909 0.00 0.00 0.00 3.59
1788 2616 4.085733 TGTTCAATGGGGAAACATCGATT 58.914 39.130 0.00 0.00 0.00 3.34
1789 2617 4.526262 TGTTCAATGGGGAAACATCGATTT 59.474 37.500 0.00 0.00 0.00 2.17
1790 2618 4.717233 TCAATGGGGAAACATCGATTTG 57.283 40.909 0.00 0.00 0.00 2.32
1791 2619 3.119173 TCAATGGGGAAACATCGATTTGC 60.119 43.478 0.00 0.00 0.00 3.68
1792 2620 1.181786 TGGGGAAACATCGATTTGCC 58.818 50.000 12.25 12.25 46.40 4.52
1793 2621 1.272425 TGGGGAAACATCGATTTGCCT 60.272 47.619 18.03 0.00 46.35 4.75
1794 2622 1.824852 GGGGAAACATCGATTTGCCTT 59.175 47.619 18.03 0.00 46.35 4.35
1795 2623 2.233676 GGGGAAACATCGATTTGCCTTT 59.766 45.455 18.03 2.76 46.35 3.11
1796 2624 3.306710 GGGGAAACATCGATTTGCCTTTT 60.307 43.478 18.03 2.83 46.35 2.27
1797 2625 3.679502 GGGAAACATCGATTTGCCTTTTG 59.320 43.478 13.13 0.00 44.39 2.44
1798 2626 3.679502 GGAAACATCGATTTGCCTTTTGG 59.320 43.478 0.00 0.00 44.18 3.28
1799 2627 4.306600 GAAACATCGATTTGCCTTTTGGT 58.693 39.130 0.00 0.00 42.99 3.67
1800 2628 3.575965 ACATCGATTTGCCTTTTGGTC 57.424 42.857 0.00 0.00 42.99 4.02
1801 2629 3.157087 ACATCGATTTGCCTTTTGGTCT 58.843 40.909 0.00 0.00 42.99 3.85
1802 2630 3.057315 ACATCGATTTGCCTTTTGGTCTG 60.057 43.478 0.00 0.00 42.99 3.51
1803 2631 1.885887 TCGATTTGCCTTTTGGTCTGG 59.114 47.619 0.00 0.00 42.99 3.86
1804 2632 1.885887 CGATTTGCCTTTTGGTCTGGA 59.114 47.619 0.00 0.00 42.99 3.86
1805 2633 2.295909 CGATTTGCCTTTTGGTCTGGAA 59.704 45.455 0.00 0.00 42.99 3.53
1806 2634 3.653344 GATTTGCCTTTTGGTCTGGAAC 58.347 45.455 0.00 0.00 42.99 3.62
1807 2635 2.452600 TTGCCTTTTGGTCTGGAACT 57.547 45.000 0.00 0.00 42.99 3.01
1808 2636 1.981256 TGCCTTTTGGTCTGGAACTC 58.019 50.000 0.00 0.00 42.99 3.01
1809 2637 1.494721 TGCCTTTTGGTCTGGAACTCT 59.505 47.619 0.00 0.00 42.99 3.24
1810 2638 1.882623 GCCTTTTGGTCTGGAACTCTG 59.117 52.381 0.00 0.00 42.99 3.35
1811 2639 2.508526 CCTTTTGGTCTGGAACTCTGG 58.491 52.381 0.00 0.00 34.07 3.86
1812 2640 2.106511 CCTTTTGGTCTGGAACTCTGGA 59.893 50.000 0.00 0.00 34.07 3.86
1813 2641 3.245052 CCTTTTGGTCTGGAACTCTGGAT 60.245 47.826 0.00 0.00 34.07 3.41
1814 2642 3.423539 TTTGGTCTGGAACTCTGGATG 57.576 47.619 0.00 0.00 0.00 3.51
1815 2643 0.615331 TGGTCTGGAACTCTGGATGC 59.385 55.000 0.00 0.00 0.00 3.91
1816 2644 0.107459 GGTCTGGAACTCTGGATGCC 60.107 60.000 0.00 0.00 0.00 4.40
1817 2645 0.908198 GTCTGGAACTCTGGATGCCT 59.092 55.000 0.00 0.00 0.00 4.75
1818 2646 2.111384 GTCTGGAACTCTGGATGCCTA 58.889 52.381 0.00 0.00 0.00 3.93
1819 2647 2.703007 GTCTGGAACTCTGGATGCCTAT 59.297 50.000 0.00 0.00 0.00 2.57
1820 2648 2.702478 TCTGGAACTCTGGATGCCTATG 59.298 50.000 0.00 0.00 0.00 2.23
1821 2649 2.702478 CTGGAACTCTGGATGCCTATGA 59.298 50.000 0.00 0.00 0.00 2.15
1822 2650 3.114606 TGGAACTCTGGATGCCTATGAA 58.885 45.455 0.00 0.00 0.00 2.57
1823 2651 3.718434 TGGAACTCTGGATGCCTATGAAT 59.282 43.478 0.00 0.00 0.00 2.57
1824 2652 4.070716 GGAACTCTGGATGCCTATGAATG 58.929 47.826 0.00 0.00 0.00 2.67
1825 2653 3.784511 ACTCTGGATGCCTATGAATGG 57.215 47.619 0.00 0.00 0.00 3.16
1826 2654 3.051581 ACTCTGGATGCCTATGAATGGT 58.948 45.455 0.00 0.00 0.00 3.55
1827 2655 3.461085 ACTCTGGATGCCTATGAATGGTT 59.539 43.478 0.00 0.00 0.00 3.67
1828 2656 3.819337 CTCTGGATGCCTATGAATGGTTG 59.181 47.826 0.00 0.00 0.00 3.77
1829 2657 3.459227 TCTGGATGCCTATGAATGGTTGA 59.541 43.478 0.00 0.00 0.00 3.18
1830 2658 4.079844 TCTGGATGCCTATGAATGGTTGAA 60.080 41.667 0.00 0.00 0.00 2.69
1831 2659 4.209538 TGGATGCCTATGAATGGTTGAAG 58.790 43.478 0.00 0.00 0.00 3.02
1832 2660 3.005155 GGATGCCTATGAATGGTTGAAGC 59.995 47.826 0.00 0.00 0.00 3.86
1833 2661 3.370840 TGCCTATGAATGGTTGAAGCT 57.629 42.857 0.00 0.00 0.00 3.74
1834 2662 3.700538 TGCCTATGAATGGTTGAAGCTT 58.299 40.909 0.00 0.00 0.00 3.74
1835 2663 3.444742 TGCCTATGAATGGTTGAAGCTTG 59.555 43.478 2.10 0.00 0.00 4.01
1836 2664 3.445096 GCCTATGAATGGTTGAAGCTTGT 59.555 43.478 2.10 0.00 0.00 3.16
1837 2665 4.676196 GCCTATGAATGGTTGAAGCTTGTG 60.676 45.833 2.10 0.00 0.00 3.33
1838 2666 4.701651 CCTATGAATGGTTGAAGCTTGTGA 59.298 41.667 2.10 0.00 0.00 3.58
1839 2667 5.183713 CCTATGAATGGTTGAAGCTTGTGAA 59.816 40.000 2.10 0.00 0.00 3.18
1840 2668 5.733620 ATGAATGGTTGAAGCTTGTGAAT 57.266 34.783 2.10 0.00 0.00 2.57
1841 2669 5.534207 TGAATGGTTGAAGCTTGTGAATT 57.466 34.783 2.10 0.00 0.00 2.17
1842 2670 5.291178 TGAATGGTTGAAGCTTGTGAATTG 58.709 37.500 2.10 0.00 0.00 2.32
1843 2671 5.068855 TGAATGGTTGAAGCTTGTGAATTGA 59.931 36.000 2.10 0.00 0.00 2.57
1844 2672 4.572985 TGGTTGAAGCTTGTGAATTGAG 57.427 40.909 2.10 0.00 0.00 3.02
1845 2673 4.206375 TGGTTGAAGCTTGTGAATTGAGA 58.794 39.130 2.10 0.00 0.00 3.27
1846 2674 4.828939 TGGTTGAAGCTTGTGAATTGAGAT 59.171 37.500 2.10 0.00 0.00 2.75
1847 2675 5.159209 GGTTGAAGCTTGTGAATTGAGATG 58.841 41.667 2.10 0.00 0.00 2.90
1848 2676 5.278660 GGTTGAAGCTTGTGAATTGAGATGT 60.279 40.000 2.10 0.00 0.00 3.06
1849 2677 6.211515 GTTGAAGCTTGTGAATTGAGATGTT 58.788 36.000 2.10 0.00 0.00 2.71
1850 2678 6.395426 TGAAGCTTGTGAATTGAGATGTTT 57.605 33.333 2.10 0.00 0.00 2.83
1851 2679 6.441274 TGAAGCTTGTGAATTGAGATGTTTC 58.559 36.000 2.10 0.00 0.00 2.78
1852 2680 6.263842 TGAAGCTTGTGAATTGAGATGTTTCT 59.736 34.615 2.10 0.00 33.88 2.52
1853 2681 7.445096 TGAAGCTTGTGAATTGAGATGTTTCTA 59.555 33.333 2.10 0.00 30.30 2.10
1854 2682 7.934855 AGCTTGTGAATTGAGATGTTTCTAT 57.065 32.000 0.00 0.00 30.30 1.98
1855 2683 8.345724 AGCTTGTGAATTGAGATGTTTCTATT 57.654 30.769 0.00 0.00 30.30 1.73
1856 2684 8.242053 AGCTTGTGAATTGAGATGTTTCTATTG 58.758 33.333 0.00 0.00 30.30 1.90
1857 2685 8.025445 GCTTGTGAATTGAGATGTTTCTATTGT 58.975 33.333 0.00 0.00 30.30 2.71
1858 2686 9.338291 CTTGTGAATTGAGATGTTTCTATTGTG 57.662 33.333 0.00 0.00 30.30 3.33
1859 2687 7.819644 TGTGAATTGAGATGTTTCTATTGTGG 58.180 34.615 0.00 0.00 30.30 4.17
1860 2688 7.448161 TGTGAATTGAGATGTTTCTATTGTGGT 59.552 33.333 0.00 0.00 30.30 4.16
1861 2689 7.965107 GTGAATTGAGATGTTTCTATTGTGGTC 59.035 37.037 0.00 0.00 30.30 4.02
1862 2690 7.884877 TGAATTGAGATGTTTCTATTGTGGTCT 59.115 33.333 0.00 0.00 30.30 3.85
1863 2691 7.621428 ATTGAGATGTTTCTATTGTGGTCTG 57.379 36.000 0.00 0.00 30.30 3.51
1864 2692 5.491070 TGAGATGTTTCTATTGTGGTCTGG 58.509 41.667 0.00 0.00 30.30 3.86
1865 2693 5.248248 TGAGATGTTTCTATTGTGGTCTGGA 59.752 40.000 0.00 0.00 30.30 3.86
1866 2694 6.070021 TGAGATGTTTCTATTGTGGTCTGGAT 60.070 38.462 0.00 0.00 30.30 3.41
1867 2695 6.118170 AGATGTTTCTATTGTGGTCTGGATG 58.882 40.000 0.00 0.00 0.00 3.51
1868 2696 4.009675 TGTTTCTATTGTGGTCTGGATGC 58.990 43.478 0.00 0.00 0.00 3.91
1869 2697 4.263462 TGTTTCTATTGTGGTCTGGATGCT 60.263 41.667 0.00 0.00 0.00 3.79
1870 2698 3.548745 TCTATTGTGGTCTGGATGCTG 57.451 47.619 0.00 0.00 0.00 4.41
1871 2699 1.945394 CTATTGTGGTCTGGATGCTGC 59.055 52.381 0.00 0.00 0.00 5.25
1872 2700 0.682209 ATTGTGGTCTGGATGCTGCC 60.682 55.000 0.00 0.00 0.00 4.85
1873 2701 1.782201 TTGTGGTCTGGATGCTGCCT 61.782 55.000 0.00 0.00 0.00 4.75
1874 2702 0.909133 TGTGGTCTGGATGCTGCCTA 60.909 55.000 0.00 0.00 0.00 3.93
1875 2703 0.471617 GTGGTCTGGATGCTGCCTAT 59.528 55.000 0.00 0.00 0.00 2.57
1876 2704 0.471191 TGGTCTGGATGCTGCCTATG 59.529 55.000 0.00 0.00 0.00 2.23
1877 2705 0.761187 GGTCTGGATGCTGCCTATGA 59.239 55.000 0.00 0.00 0.00 2.15
1878 2706 1.141657 GGTCTGGATGCTGCCTATGAA 59.858 52.381 0.00 0.00 0.00 2.57
1879 2707 2.224719 GGTCTGGATGCTGCCTATGAAT 60.225 50.000 0.00 0.00 0.00 2.57
1880 2708 2.812591 GTCTGGATGCTGCCTATGAATG 59.187 50.000 0.00 0.00 0.00 2.67
1881 2709 2.707257 TCTGGATGCTGCCTATGAATGA 59.293 45.455 0.00 0.00 0.00 2.57
1882 2710 3.329814 TCTGGATGCTGCCTATGAATGAT 59.670 43.478 0.00 0.00 0.00 2.45
1883 2711 4.533311 TCTGGATGCTGCCTATGAATGATA 59.467 41.667 0.00 0.00 0.00 2.15
1884 2712 4.840271 TGGATGCTGCCTATGAATGATAG 58.160 43.478 0.00 0.00 34.73 2.08
1885 2713 3.626670 GGATGCTGCCTATGAATGATAGC 59.373 47.826 0.00 0.00 33.72 2.97
1886 2714 2.691927 TGCTGCCTATGAATGATAGCG 58.308 47.619 0.00 0.00 33.72 4.26
1887 2715 2.005451 GCTGCCTATGAATGATAGCGG 58.995 52.381 0.00 0.00 33.72 5.52
1888 2716 2.005451 CTGCCTATGAATGATAGCGGC 58.995 52.381 0.00 0.00 33.72 6.53
1889 2717 1.625315 TGCCTATGAATGATAGCGGCT 59.375 47.619 7.98 7.98 33.72 5.52
1890 2718 2.038952 TGCCTATGAATGATAGCGGCTT 59.961 45.455 8.26 0.00 33.72 4.35
1891 2719 2.417933 GCCTATGAATGATAGCGGCTTG 59.582 50.000 8.26 0.00 33.72 4.01
1892 2720 3.668447 CCTATGAATGATAGCGGCTTGT 58.332 45.455 8.26 0.00 33.72 3.16
1893 2721 3.434641 CCTATGAATGATAGCGGCTTGTG 59.565 47.826 8.26 0.00 33.72 3.33
1894 2722 2.689553 TGAATGATAGCGGCTTGTGA 57.310 45.000 8.26 0.00 0.00 3.58
1895 2723 3.198409 TGAATGATAGCGGCTTGTGAT 57.802 42.857 8.26 0.00 0.00 3.06
1896 2724 2.874086 TGAATGATAGCGGCTTGTGATG 59.126 45.455 8.26 0.00 0.00 3.07
1897 2725 1.233019 ATGATAGCGGCTTGTGATGC 58.767 50.000 8.26 0.00 0.00 3.91
1898 2726 0.107752 TGATAGCGGCTTGTGATGCA 60.108 50.000 8.26 0.00 0.00 3.96
1899 2727 1.016627 GATAGCGGCTTGTGATGCAA 58.983 50.000 8.26 0.00 35.50 4.08
1900 2728 1.605710 GATAGCGGCTTGTGATGCAAT 59.394 47.619 8.26 0.00 36.36 3.56
1901 2729 0.734309 TAGCGGCTTGTGATGCAATG 59.266 50.000 8.26 0.00 36.36 2.82
1902 2730 1.213537 GCGGCTTGTGATGCAATGT 59.786 52.632 0.00 0.00 36.36 2.71
1903 2731 0.388907 GCGGCTTGTGATGCAATGTT 60.389 50.000 0.00 0.00 36.36 2.71
1904 2732 1.936203 GCGGCTTGTGATGCAATGTTT 60.936 47.619 0.00 0.00 36.36 2.83
1905 2733 1.987770 CGGCTTGTGATGCAATGTTTC 59.012 47.619 0.00 0.00 36.36 2.78
1910 2738 5.290158 GGCTTGTGATGCAATGTTTCTATTG 59.710 40.000 0.00 0.00 40.25 1.90
1954 2782 7.880105 TCGATGCATATGTAGATCATATCTCC 58.120 38.462 0.00 0.00 44.90 3.71
1999 3105 4.439057 AGCTCATTGGCATGCTTTTTATG 58.561 39.130 18.92 13.24 30.96 1.90
2031 3140 9.868277 ATACTACGATAGGTGTAGAGTACATAC 57.132 37.037 7.11 0.00 41.44 2.39
2040 3151 7.828712 AGGTGTAGAGTACATACTGTTTCTTC 58.171 38.462 0.00 0.00 41.34 2.87
2184 3510 3.324846 TGTAGATCATATCCCTGTGTGGC 59.675 47.826 0.00 0.00 0.00 5.01
2191 3517 0.033796 ATCCCTGTGTGGCTTGGATG 60.034 55.000 0.00 0.00 34.59 3.51
2238 3755 8.549338 ACTTTTTATCAAGTACTAGTTGAGGC 57.451 34.615 0.00 0.00 40.49 4.70
2249 3766 3.827302 ACTAGTTGAGGCGTATAGATGGG 59.173 47.826 0.00 0.00 0.00 4.00
2329 3846 5.709966 TGTATATGGATGTCTATGCGTGAC 58.290 41.667 0.00 0.00 35.21 3.67
2453 3974 6.777526 GCTTATTAGCATACTCTTGAGGTG 57.222 41.667 0.00 2.45 46.95 4.00
2489 4036 8.847444 ATTTCTTTCAAGATTCAACGATATGC 57.153 30.769 0.00 0.00 34.49 3.14
2521 4068 9.891828 GTTGTTTACATGTTTGTATCTTGATGA 57.108 29.630 2.30 0.00 38.12 2.92
2583 4130 4.058721 TGTGATCTGTTCGATGGGTATG 57.941 45.455 0.00 0.00 30.84 2.39
2727 4286 9.299963 GCTTTCACATGCATGTTTGTTTATATA 57.700 29.630 29.48 5.63 39.39 0.86
2730 4289 9.747293 TTCACATGCATGTTTGTTTATATATGG 57.253 29.630 29.48 12.94 39.39 2.74
2755 4314 6.628919 TCAATGAAATGGATGCATGTCTAG 57.371 37.500 17.31 8.07 0.00 2.43
2765 4324 3.690475 TGCATGTCTAGGCATGATAGG 57.310 47.619 35.64 13.63 46.65 2.57
2767 4326 3.647590 TGCATGTCTAGGCATGATAGGAA 59.352 43.478 35.64 13.56 46.65 3.36
2799 4362 3.627123 TGTGATGTTTCTGTTGTGGTCTG 59.373 43.478 0.00 0.00 0.00 3.51
2812 4375 2.109834 TGTGGTCTGTTTGATGGGGATT 59.890 45.455 0.00 0.00 0.00 3.01
2840 4403 6.183360 TGCATATGTACATCATGTCTCTGTGA 60.183 38.462 12.68 0.00 37.91 3.58
2850 4413 8.836959 CATCATGTCTCTGTGATGTTTAAATG 57.163 34.615 7.08 0.00 44.12 2.32
2851 4414 7.984422 TCATGTCTCTGTGATGTTTAAATGT 57.016 32.000 0.00 0.00 0.00 2.71
2978 4715 9.083080 TGTTTACATGTTTGTATCTAGATGTCG 57.917 33.333 15.79 0.00 38.12 4.35
3022 4764 9.801714 CTTGTGAATTGAAATATTTCTTTGTGC 57.198 29.630 24.77 13.60 38.02 4.57
3061 4808 6.270695 TGGAGATTGATGCCTATGTAGATCAA 59.729 38.462 0.00 0.00 38.75 2.57
3327 5479 4.510340 TCAAAGTTTGGTTCGAGTCTTAGC 59.490 41.667 15.47 0.00 0.00 3.09
3438 5600 3.857157 TTAGTTTCTGTCCTGGCACTT 57.143 42.857 0.00 0.00 0.00 3.16
3473 5635 7.254319 GCTCTTGCATGAATTAATGGTGAAATG 60.254 37.037 4.90 0.00 39.41 2.32
3496 5666 5.593010 GAAGTATTCGAGGTCTACTTGCAT 58.407 41.667 13.21 0.00 36.19 3.96
3534 5711 6.317140 TCAAATAGTGCTCTTGCTTTCCTATG 59.683 38.462 0.00 0.00 40.48 2.23
3643 6074 3.758023 TGTATTTGTTGCCACATCTGGAG 59.242 43.478 0.00 0.00 40.55 3.86
3717 6171 0.040157 GTTGCAGCACTGAAATCGCA 60.040 50.000 0.00 0.00 29.51 5.10
3719 6173 0.883153 TGCAGCACTGAAATCGCATT 59.117 45.000 0.81 0.00 0.00 3.56
3721 6175 2.159531 TGCAGCACTGAAATCGCATTAC 60.160 45.455 0.81 0.00 0.00 1.89
3722 6176 2.792542 GCAGCACTGAAATCGCATTACC 60.793 50.000 0.81 0.00 0.00 2.85
3723 6177 2.679837 CAGCACTGAAATCGCATTACCT 59.320 45.455 0.00 0.00 0.00 3.08
3724 6178 3.127548 CAGCACTGAAATCGCATTACCTT 59.872 43.478 0.00 0.00 0.00 3.50
3725 6179 3.127548 AGCACTGAAATCGCATTACCTTG 59.872 43.478 0.00 0.00 0.00 3.61
3726 6180 3.119849 GCACTGAAATCGCATTACCTTGT 60.120 43.478 0.00 0.00 0.00 3.16
3727 6181 4.651994 CACTGAAATCGCATTACCTTGTC 58.348 43.478 0.00 0.00 0.00 3.18
3728 6182 4.154015 CACTGAAATCGCATTACCTTGTCA 59.846 41.667 0.00 0.00 0.00 3.58
3729 6183 4.154195 ACTGAAATCGCATTACCTTGTCAC 59.846 41.667 0.00 0.00 0.00 3.67
3731 6185 3.350219 AATCGCATTACCTTGTCACCT 57.650 42.857 0.00 0.00 0.00 4.00
3734 6188 2.829720 TCGCATTACCTTGTCACCTACT 59.170 45.455 0.00 0.00 0.00 2.57
3735 6189 3.119245 TCGCATTACCTTGTCACCTACTC 60.119 47.826 0.00 0.00 0.00 2.59
3736 6190 3.187700 GCATTACCTTGTCACCTACTCG 58.812 50.000 0.00 0.00 0.00 4.18
3737 6191 3.187700 CATTACCTTGTCACCTACTCGC 58.812 50.000 0.00 0.00 0.00 5.03
3830 6288 3.792114 TCCAGGGACCATACTAAGAGAGA 59.208 47.826 0.00 0.00 0.00 3.10
3856 6314 1.422977 TAGTTGCAGCCCCCTTGTGA 61.423 55.000 0.00 0.00 0.00 3.58
3858 6316 3.808218 TTGCAGCCCCCTTGTGACC 62.808 63.158 0.00 0.00 0.00 4.02
3895 6358 5.701290 AGTTGAGAATTAGGAAACACCGAAG 59.299 40.000 0.00 0.00 44.74 3.79
3897 6360 3.000727 AGAATTAGGAAACACCGAAGCG 58.999 45.455 0.00 0.00 44.74 4.68
3933 6397 1.985473 ACAAAGCATGGACAGCTGAA 58.015 45.000 23.35 5.79 42.53 3.02
4005 6475 2.079925 GAACCTGATTCAGAGGTGCAC 58.920 52.381 15.36 8.80 43.42 4.57
4008 6478 1.690283 CTGATTCAGAGGTGCACGCG 61.690 60.000 11.45 3.53 32.44 6.01
4009 6479 1.446099 GATTCAGAGGTGCACGCGA 60.446 57.895 15.93 1.24 0.00 5.87
4010 6480 1.687494 GATTCAGAGGTGCACGCGAC 61.687 60.000 15.93 4.74 0.00 5.19
4011 6481 3.858868 TTCAGAGGTGCACGCGACC 62.859 63.158 15.93 10.86 0.00 4.79
4012 6482 4.662961 CAGAGGTGCACGCGACCA 62.663 66.667 15.93 6.18 35.76 4.02
4013 6483 3.695606 AGAGGTGCACGCGACCAT 61.696 61.111 15.93 0.00 35.76 3.55
4014 6484 3.490759 GAGGTGCACGCGACCATG 61.491 66.667 15.93 0.22 35.76 3.66
4021 6491 2.885644 ACGCGACCATGCATCGTC 60.886 61.111 15.93 13.82 41.68 4.20
4026 6496 3.160557 GACCATGCATCGTCGCAGC 62.161 63.158 8.74 2.33 46.99 5.25
4034 6504 2.130426 ATCGTCGCAGCAGGGAGAT 61.130 57.895 0.00 0.00 37.39 2.75
4058 6528 2.376808 TTCTCTACTGCAGCTTCAGC 57.623 50.000 15.27 0.00 37.59 4.26
4092 6562 5.630680 CACTTTTGATATGTGCACTTTGGAC 59.369 40.000 19.41 5.50 39.30 4.02
4099 6569 0.467290 GTGCACTTTGGACCCTTGGA 60.467 55.000 10.32 0.00 32.15 3.53
4101 6571 0.467290 GCACTTTGGACCCTTGGACA 60.467 55.000 0.00 0.00 0.00 4.02
4105 6575 1.895131 CTTTGGACCCTTGGACATTGG 59.105 52.381 0.00 0.00 0.00 3.16
4108 6578 1.256812 GGACCCTTGGACATTGGTTG 58.743 55.000 0.00 0.00 0.00 3.77
4109 6579 1.203001 GGACCCTTGGACATTGGTTGA 60.203 52.381 0.00 0.00 0.00 3.18
4110 6580 2.162681 GACCCTTGGACATTGGTTGAG 58.837 52.381 0.00 0.00 0.00 3.02
4111 6581 1.203050 ACCCTTGGACATTGGTTGAGG 60.203 52.381 0.00 0.00 0.00 3.86
4112 6582 1.549203 CCTTGGACATTGGTTGAGGG 58.451 55.000 0.00 0.00 0.00 4.30
4113 6583 1.549203 CTTGGACATTGGTTGAGGGG 58.451 55.000 0.00 0.00 0.00 4.79
4114 6584 1.075374 CTTGGACATTGGTTGAGGGGA 59.925 52.381 0.00 0.00 0.00 4.81
4115 6585 0.698238 TGGACATTGGTTGAGGGGAG 59.302 55.000 0.00 0.00 0.00 4.30
4116 6586 0.034089 GGACATTGGTTGAGGGGAGG 60.034 60.000 0.00 0.00 0.00 4.30
4117 6587 0.698818 GACATTGGTTGAGGGGAGGT 59.301 55.000 0.00 0.00 0.00 3.85
4118 6588 1.075536 GACATTGGTTGAGGGGAGGTT 59.924 52.381 0.00 0.00 0.00 3.50
4119 6589 1.203050 ACATTGGTTGAGGGGAGGTTG 60.203 52.381 0.00 0.00 0.00 3.77
4159 6629 4.318332 CACACAGGCACTTTCTTCAGATA 58.682 43.478 0.00 0.00 34.60 1.98
4160 6630 4.756642 CACACAGGCACTTTCTTCAGATAA 59.243 41.667 0.00 0.00 34.60 1.75
4162 6632 5.471456 ACACAGGCACTTTCTTCAGATAAAG 59.529 40.000 4.82 4.82 34.60 1.85
4165 6635 3.129462 GGCACTTTCTTCAGATAAAGGCC 59.871 47.826 15.16 15.16 39.54 5.19
4166 6636 4.013050 GCACTTTCTTCAGATAAAGGCCT 58.987 43.478 0.00 0.00 37.09 5.19
4168 6638 5.295540 GCACTTTCTTCAGATAAAGGCCTAG 59.704 44.000 5.16 0.00 37.09 3.02
4169 6639 6.410540 CACTTTCTTCAGATAAAGGCCTAGT 58.589 40.000 5.16 0.00 37.09 2.57
4170 6640 6.881602 CACTTTCTTCAGATAAAGGCCTAGTT 59.118 38.462 5.16 0.00 37.09 2.24
4171 6641 7.391833 CACTTTCTTCAGATAAAGGCCTAGTTT 59.608 37.037 5.16 0.00 37.09 2.66
4172 6642 7.945109 ACTTTCTTCAGATAAAGGCCTAGTTTT 59.055 33.333 5.16 0.00 37.09 2.43
4173 6643 8.706322 TTTCTTCAGATAAAGGCCTAGTTTTT 57.294 30.769 5.16 0.00 0.00 1.94
4198 6668 2.810870 TTTTGCGGGATAAAGGCCTA 57.189 45.000 5.16 0.00 0.00 3.93
4208 6678 3.954258 GGATAAAGGCCTAGTTGCAATGT 59.046 43.478 5.16 0.00 0.00 2.71
4210 6680 0.890683 AAGGCCTAGTTGCAATGTGC 59.109 50.000 5.16 3.48 45.29 4.57
4244 6714 6.593382 TCTTCAATGGAAAACCAACAAACTTG 59.407 34.615 0.00 0.00 31.35 3.16
4245 6715 4.633565 TCAATGGAAAACCAACAAACTTGC 59.366 37.500 0.00 0.00 0.00 4.01
4246 6716 2.979240 TGGAAAACCAACAAACTTGCC 58.021 42.857 0.00 0.00 0.00 4.52
4247 6717 2.303022 TGGAAAACCAACAAACTTGCCA 59.697 40.909 0.00 0.00 0.00 4.92
4248 6718 3.244561 TGGAAAACCAACAAACTTGCCAA 60.245 39.130 0.00 0.00 0.00 4.52
4249 6719 3.753797 GGAAAACCAACAAACTTGCCAAA 59.246 39.130 0.00 0.00 0.00 3.28
4250 6720 4.378978 GGAAAACCAACAAACTTGCCAAAC 60.379 41.667 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.026407 CAGTTTTTGTTCGTCTTCGTTCC 58.974 43.478 0.00 0.00 38.33 3.62
14 15 4.274950 TGGATCCAGTTTTTGTTCGTCTTC 59.725 41.667 11.44 0.00 0.00 2.87
18 19 4.993029 TTTGGATCCAGTTTTTGTTCGT 57.007 36.364 15.53 0.00 0.00 3.85
20 21 9.358872 GAATCTATTTGGATCCAGTTTTTGTTC 57.641 33.333 15.53 11.28 0.00 3.18
45 46 1.608025 GGTCGTGCTGGTCTTCAATGA 60.608 52.381 0.00 0.00 0.00 2.57
49 50 1.740332 TTCGGTCGTGCTGGTCTTCA 61.740 55.000 0.00 0.00 0.00 3.02
95 97 1.909302 GGTGAGAAGGAGGATGTGGAA 59.091 52.381 0.00 0.00 0.00 3.53
102 104 0.687757 CCCGATGGTGAGAAGGAGGA 60.688 60.000 0.00 0.00 0.00 3.71
103 105 1.690219 CCCCGATGGTGAGAAGGAGG 61.690 65.000 0.00 0.00 0.00 4.30
104 106 1.826024 CCCCGATGGTGAGAAGGAG 59.174 63.158 0.00 0.00 0.00 3.69
105 107 2.367202 GCCCCGATGGTGAGAAGGA 61.367 63.158 0.00 0.00 36.04 3.36
152 166 2.416260 GGCGATGTCCCTCGGTAC 59.584 66.667 0.00 0.00 39.05 3.34
179 193 0.250553 CAACGTCTTGGTTGGGGCTA 60.251 55.000 0.00 0.00 42.73 3.93
242 256 2.202987 GGTGCGCAGGATCTCAGG 60.203 66.667 12.22 0.00 0.00 3.86
253 268 4.980805 TGGAACGTGGAGGTGCGC 62.981 66.667 0.00 0.00 0.00 6.09
267 282 1.279496 CACCTCCAATGACCTCTGGA 58.721 55.000 0.00 0.00 39.47 3.86
271 286 1.609783 CCCCACCTCCAATGACCTC 59.390 63.158 0.00 0.00 0.00 3.85
275 290 0.920763 ATCTGCCCCACCTCCAATGA 60.921 55.000 0.00 0.00 0.00 2.57
312 327 4.750598 TGAACGTCAATTGGTTCGTCATAA 59.249 37.500 18.47 3.23 44.18 1.90
313 328 4.308265 TGAACGTCAATTGGTTCGTCATA 58.692 39.130 18.47 9.65 44.18 2.15
414 429 8.411318 AGTTGTGTCAAAAGAAACATTTGATC 57.589 30.769 5.15 0.00 45.50 2.92
417 432 9.739786 GTAAAGTTGTGTCAAAAGAAACATTTG 57.260 29.630 0.00 0.00 38.76 2.32
441 456 6.889494 TGCGACAAAATTTCGTAAATCTGTA 58.111 32.000 0.00 0.00 38.77 2.74
442 457 5.753744 TGCGACAAAATTTCGTAAATCTGT 58.246 33.333 0.00 0.00 38.77 3.41
480 495 2.101082 GGTAACTTGTTCCCCGCAAAAA 59.899 45.455 0.00 0.00 0.00 1.94
481 496 1.682323 GGTAACTTGTTCCCCGCAAAA 59.318 47.619 0.00 0.00 0.00 2.44
482 497 1.320507 GGTAACTTGTTCCCCGCAAA 58.679 50.000 0.00 0.00 0.00 3.68
483 498 0.537828 GGGTAACTTGTTCCCCGCAA 60.538 55.000 0.00 0.00 35.52 4.85
484 499 1.073548 GGGTAACTTGTTCCCCGCA 59.926 57.895 0.00 0.00 35.52 5.69
485 500 0.958876 CAGGGTAACTTGTTCCCCGC 60.959 60.000 8.23 0.00 42.26 6.13
486 501 3.243128 CAGGGTAACTTGTTCCCCG 57.757 57.895 8.23 1.38 42.26 5.73
504 519 3.998341 TGGTGGCTTAGTTATGTCGAAAC 59.002 43.478 0.00 0.00 0.00 2.78
508 523 4.394920 ACAAATGGTGGCTTAGTTATGTCG 59.605 41.667 0.00 0.00 0.00 4.35
513 528 7.826918 AAAGTTACAAATGGTGGCTTAGTTA 57.173 32.000 0.00 0.00 0.00 2.24
519 534 8.972458 AAAATTAAAAGTTACAAATGGTGGCT 57.028 26.923 0.00 0.00 0.00 4.75
659 685 5.227908 TCGTCTGACTCTTGTGGAAATTAC 58.772 41.667 6.21 0.00 0.00 1.89
676 702 8.294341 TGAAGTGTTAAAAGTAAGATCGTCTG 57.706 34.615 0.00 0.00 0.00 3.51
683 709 7.551262 TGAGCAACTGAAGTGTTAAAAGTAAGA 59.449 33.333 0.00 0.00 0.00 2.10
695 721 2.033801 CCAAACCTGAGCAACTGAAGTG 59.966 50.000 0.00 0.00 0.00 3.16
731 768 0.978151 TAAGGCCCAACGTCTAAGCA 59.022 50.000 0.00 0.00 0.00 3.91
732 769 2.103537 TTAAGGCCCAACGTCTAAGC 57.896 50.000 0.00 0.00 0.00 3.09
761 798 2.868583 GCGGTCACTCTCTACATACGTA 59.131 50.000 0.00 0.00 0.00 3.57
764 801 1.597445 GCGCGGTCACTCTCTACATAC 60.597 57.143 8.83 0.00 0.00 2.39
765 802 0.661552 GCGCGGTCACTCTCTACATA 59.338 55.000 8.83 0.00 0.00 2.29
766 803 1.032657 AGCGCGGTCACTCTCTACAT 61.033 55.000 4.23 0.00 0.00 2.29
785 822 2.438614 CTCGGTCGGAGGAGAGCA 60.439 66.667 0.00 0.00 39.22 4.26
827 878 4.570663 CCGACCGAAGCCCTAGCG 62.571 72.222 0.00 0.00 46.67 4.26
896 947 1.269936 ACGTGGGTGCGGTTATATAGC 60.270 52.381 0.00 0.00 35.98 2.97
897 948 2.608752 GGACGTGGGTGCGGTTATATAG 60.609 54.545 0.00 0.00 35.98 1.31
898 949 1.340889 GGACGTGGGTGCGGTTATATA 59.659 52.381 0.00 0.00 35.98 0.86
899 950 0.105408 GGACGTGGGTGCGGTTATAT 59.895 55.000 0.00 0.00 35.98 0.86
927 979 0.987294 ACTGGACTGGTGAGAATGGG 59.013 55.000 0.00 0.00 0.00 4.00
940 992 1.299976 GGATGGTGGTGGACTGGAC 59.700 63.158 0.00 0.00 0.00 4.02
941 993 2.290287 CGGATGGTGGTGGACTGGA 61.290 63.158 0.00 0.00 0.00 3.86
942 994 2.268920 CGGATGGTGGTGGACTGG 59.731 66.667 0.00 0.00 0.00 4.00
943 995 2.268920 CCGGATGGTGGTGGACTG 59.731 66.667 0.00 0.00 0.00 3.51
944 996 3.717294 GCCGGATGGTGGTGGACT 61.717 66.667 5.05 0.00 37.67 3.85
964 1022 1.528309 GCTCTCCTCTCCTCTCCCG 60.528 68.421 0.00 0.00 0.00 5.14
1117 1247 1.592223 GAGTCCGTTGTGGGAGGAG 59.408 63.158 0.00 0.00 36.58 3.69
1121 1251 3.307906 CCGGAGTCCGTTGTGGGA 61.308 66.667 28.98 0.00 46.80 4.37
1239 1369 3.661131 TAGATCGAGGAGGCGCGC 61.661 66.667 25.94 25.94 0.00 6.86
1287 1593 0.320334 AAATTGGCCCCTTTTTCGCG 60.320 50.000 0.00 0.00 0.00 5.87
1297 1603 5.129320 ACAGATTCAGGATAAAAATTGGCCC 59.871 40.000 0.00 0.00 0.00 5.80
1304 1610 3.694072 CGGCCACAGATTCAGGATAAAAA 59.306 43.478 2.24 0.00 0.00 1.94
1463 2130 2.047179 GGTGAAGCGTGGACTCCC 60.047 66.667 0.00 0.00 0.00 4.30
1629 2298 4.155826 CAGACCAAAAGGCAAATCGATGTA 59.844 41.667 0.00 0.00 0.00 2.29
1630 2299 3.057315 CAGACCAAAAGGCAAATCGATGT 60.057 43.478 0.00 0.00 0.00 3.06
1646 2321 0.615331 GCATCCAGAGTTCCAGACCA 59.385 55.000 0.00 0.00 0.00 4.02
1647 2322 0.107459 GGCATCCAGAGTTCCAGACC 60.107 60.000 0.00 0.00 0.00 3.85
1649 2324 2.550277 TAGGCATCCAGAGTTCCAGA 57.450 50.000 0.00 0.00 0.00 3.86
1652 2327 3.845781 TTCATAGGCATCCAGAGTTCC 57.154 47.619 0.00 0.00 0.00 3.62
1675 2363 5.766222 ACATCTCAATTCACAAGCTTCAAC 58.234 37.500 0.00 0.00 0.00 3.18
1735 2558 1.987770 GAAACATTGCATCACAAGCCG 59.012 47.619 0.00 0.00 42.87 5.52
1779 2607 3.573967 AGACCAAAAGGCAAATCGATGTT 59.426 39.130 0.00 0.00 0.00 2.71
1780 2608 3.057315 CAGACCAAAAGGCAAATCGATGT 60.057 43.478 0.00 0.00 0.00 3.06
1781 2609 3.504863 CAGACCAAAAGGCAAATCGATG 58.495 45.455 0.00 0.00 0.00 3.84
1782 2610 2.493278 CCAGACCAAAAGGCAAATCGAT 59.507 45.455 0.00 0.00 0.00 3.59
1783 2611 1.885887 CCAGACCAAAAGGCAAATCGA 59.114 47.619 0.00 0.00 0.00 3.59
1784 2612 1.885887 TCCAGACCAAAAGGCAAATCG 59.114 47.619 0.00 0.00 0.00 3.34
1785 2613 3.321968 AGTTCCAGACCAAAAGGCAAATC 59.678 43.478 0.00 0.00 0.00 2.17
1786 2614 3.308401 AGTTCCAGACCAAAAGGCAAAT 58.692 40.909 0.00 0.00 0.00 2.32
1787 2615 2.693074 GAGTTCCAGACCAAAAGGCAAA 59.307 45.455 0.00 0.00 0.00 3.68
1788 2616 2.091885 AGAGTTCCAGACCAAAAGGCAA 60.092 45.455 0.00 0.00 0.00 4.52
1789 2617 1.494721 AGAGTTCCAGACCAAAAGGCA 59.505 47.619 0.00 0.00 0.00 4.75
1790 2618 1.882623 CAGAGTTCCAGACCAAAAGGC 59.117 52.381 0.00 0.00 0.00 4.35
1791 2619 2.106511 TCCAGAGTTCCAGACCAAAAGG 59.893 50.000 0.00 0.00 0.00 3.11
1792 2620 3.492102 TCCAGAGTTCCAGACCAAAAG 57.508 47.619 0.00 0.00 0.00 2.27
1793 2621 3.754965 CATCCAGAGTTCCAGACCAAAA 58.245 45.455 0.00 0.00 0.00 2.44
1794 2622 2.553028 GCATCCAGAGTTCCAGACCAAA 60.553 50.000 0.00 0.00 0.00 3.28
1795 2623 1.003580 GCATCCAGAGTTCCAGACCAA 59.996 52.381 0.00 0.00 0.00 3.67
1796 2624 0.615331 GCATCCAGAGTTCCAGACCA 59.385 55.000 0.00 0.00 0.00 4.02
1797 2625 0.107459 GGCATCCAGAGTTCCAGACC 60.107 60.000 0.00 0.00 0.00 3.85
1798 2626 0.908198 AGGCATCCAGAGTTCCAGAC 59.092 55.000 0.00 0.00 0.00 3.51
1799 2627 2.550277 TAGGCATCCAGAGTTCCAGA 57.450 50.000 0.00 0.00 0.00 3.86
1800 2628 2.702478 TCATAGGCATCCAGAGTTCCAG 59.298 50.000 0.00 0.00 0.00 3.86
1801 2629 2.763039 TCATAGGCATCCAGAGTTCCA 58.237 47.619 0.00 0.00 0.00 3.53
1802 2630 3.845781 TTCATAGGCATCCAGAGTTCC 57.154 47.619 0.00 0.00 0.00 3.62
1803 2631 4.070716 CCATTCATAGGCATCCAGAGTTC 58.929 47.826 0.00 0.00 0.00 3.01
1804 2632 3.461085 ACCATTCATAGGCATCCAGAGTT 59.539 43.478 0.00 0.00 0.00 3.01
1805 2633 3.051581 ACCATTCATAGGCATCCAGAGT 58.948 45.455 0.00 0.00 0.00 3.24
1806 2634 3.784511 ACCATTCATAGGCATCCAGAG 57.215 47.619 0.00 0.00 0.00 3.35
1807 2635 3.459227 TCAACCATTCATAGGCATCCAGA 59.541 43.478 0.00 0.00 0.00 3.86
1808 2636 3.824133 TCAACCATTCATAGGCATCCAG 58.176 45.455 0.00 0.00 0.00 3.86
1809 2637 3.949586 TCAACCATTCATAGGCATCCA 57.050 42.857 0.00 0.00 0.00 3.41
1810 2638 3.005155 GCTTCAACCATTCATAGGCATCC 59.995 47.826 0.00 0.00 0.00 3.51
1811 2639 3.887716 AGCTTCAACCATTCATAGGCATC 59.112 43.478 0.00 0.00 0.00 3.91
1812 2640 3.907221 AGCTTCAACCATTCATAGGCAT 58.093 40.909 0.00 0.00 0.00 4.40
1813 2641 3.370840 AGCTTCAACCATTCATAGGCA 57.629 42.857 0.00 0.00 0.00 4.75
1814 2642 3.445096 ACAAGCTTCAACCATTCATAGGC 59.555 43.478 0.00 0.00 0.00 3.93
1815 2643 4.701651 TCACAAGCTTCAACCATTCATAGG 59.298 41.667 0.00 0.00 0.00 2.57
1816 2644 5.885230 TCACAAGCTTCAACCATTCATAG 57.115 39.130 0.00 0.00 0.00 2.23
1817 2645 6.839124 ATTCACAAGCTTCAACCATTCATA 57.161 33.333 0.00 0.00 0.00 2.15
1818 2646 5.733620 ATTCACAAGCTTCAACCATTCAT 57.266 34.783 0.00 0.00 0.00 2.57
1819 2647 5.068855 TCAATTCACAAGCTTCAACCATTCA 59.931 36.000 0.00 0.00 0.00 2.57
1820 2648 5.531634 TCAATTCACAAGCTTCAACCATTC 58.468 37.500 0.00 0.00 0.00 2.67
1821 2649 5.302568 TCTCAATTCACAAGCTTCAACCATT 59.697 36.000 0.00 0.00 0.00 3.16
1822 2650 4.828939 TCTCAATTCACAAGCTTCAACCAT 59.171 37.500 0.00 0.00 0.00 3.55
1823 2651 4.206375 TCTCAATTCACAAGCTTCAACCA 58.794 39.130 0.00 0.00 0.00 3.67
1824 2652 4.836125 TCTCAATTCACAAGCTTCAACC 57.164 40.909 0.00 0.00 0.00 3.77
1825 2653 5.766222 ACATCTCAATTCACAAGCTTCAAC 58.234 37.500 0.00 0.00 0.00 3.18
1826 2654 6.395426 AACATCTCAATTCACAAGCTTCAA 57.605 33.333 0.00 0.00 0.00 2.69
1827 2655 6.263842 AGAAACATCTCAATTCACAAGCTTCA 59.736 34.615 0.00 0.00 0.00 3.02
1828 2656 6.675987 AGAAACATCTCAATTCACAAGCTTC 58.324 36.000 0.00 0.00 0.00 3.86
1829 2657 6.645790 AGAAACATCTCAATTCACAAGCTT 57.354 33.333 0.00 0.00 0.00 3.74
1830 2658 7.934855 ATAGAAACATCTCAATTCACAAGCT 57.065 32.000 0.00 0.00 0.00 3.74
1831 2659 8.025445 ACAATAGAAACATCTCAATTCACAAGC 58.975 33.333 0.00 0.00 0.00 4.01
1832 2660 9.338291 CACAATAGAAACATCTCAATTCACAAG 57.662 33.333 0.00 0.00 0.00 3.16
1833 2661 8.298854 CCACAATAGAAACATCTCAATTCACAA 58.701 33.333 0.00 0.00 0.00 3.33
1834 2662 7.448161 ACCACAATAGAAACATCTCAATTCACA 59.552 33.333 0.00 0.00 0.00 3.58
1835 2663 7.820648 ACCACAATAGAAACATCTCAATTCAC 58.179 34.615 0.00 0.00 0.00 3.18
1836 2664 7.884877 AGACCACAATAGAAACATCTCAATTCA 59.115 33.333 0.00 0.00 0.00 2.57
1837 2665 8.180267 CAGACCACAATAGAAACATCTCAATTC 58.820 37.037 0.00 0.00 0.00 2.17
1838 2666 7.121759 CCAGACCACAATAGAAACATCTCAATT 59.878 37.037 0.00 0.00 0.00 2.32
1839 2667 6.600822 CCAGACCACAATAGAAACATCTCAAT 59.399 38.462 0.00 0.00 0.00 2.57
1840 2668 5.939883 CCAGACCACAATAGAAACATCTCAA 59.060 40.000 0.00 0.00 0.00 3.02
1841 2669 5.248248 TCCAGACCACAATAGAAACATCTCA 59.752 40.000 0.00 0.00 0.00 3.27
1842 2670 5.734720 TCCAGACCACAATAGAAACATCTC 58.265 41.667 0.00 0.00 0.00 2.75
1843 2671 5.762179 TCCAGACCACAATAGAAACATCT 57.238 39.130 0.00 0.00 0.00 2.90
1844 2672 5.220931 GCATCCAGACCACAATAGAAACATC 60.221 44.000 0.00 0.00 0.00 3.06
1845 2673 4.641989 GCATCCAGACCACAATAGAAACAT 59.358 41.667 0.00 0.00 0.00 2.71
1846 2674 4.009675 GCATCCAGACCACAATAGAAACA 58.990 43.478 0.00 0.00 0.00 2.83
1847 2675 4.095483 CAGCATCCAGACCACAATAGAAAC 59.905 45.833 0.00 0.00 0.00 2.78
1848 2676 4.264253 CAGCATCCAGACCACAATAGAAA 58.736 43.478 0.00 0.00 0.00 2.52
1849 2677 3.877559 CAGCATCCAGACCACAATAGAA 58.122 45.455 0.00 0.00 0.00 2.10
1850 2678 2.420547 GCAGCATCCAGACCACAATAGA 60.421 50.000 0.00 0.00 0.00 1.98
1851 2679 1.945394 GCAGCATCCAGACCACAATAG 59.055 52.381 0.00 0.00 0.00 1.73
1852 2680 1.408683 GGCAGCATCCAGACCACAATA 60.409 52.381 0.00 0.00 0.00 1.90
1853 2681 0.682209 GGCAGCATCCAGACCACAAT 60.682 55.000 0.00 0.00 0.00 2.71
1854 2682 1.303561 GGCAGCATCCAGACCACAA 60.304 57.895 0.00 0.00 0.00 3.33
1855 2683 0.909133 TAGGCAGCATCCAGACCACA 60.909 55.000 0.00 0.00 0.00 4.17
1856 2684 0.471617 ATAGGCAGCATCCAGACCAC 59.528 55.000 0.00 0.00 0.00 4.16
1857 2685 0.471191 CATAGGCAGCATCCAGACCA 59.529 55.000 0.00 0.00 0.00 4.02
1858 2686 0.761187 TCATAGGCAGCATCCAGACC 59.239 55.000 0.00 0.00 0.00 3.85
1859 2687 2.627515 TTCATAGGCAGCATCCAGAC 57.372 50.000 0.00 0.00 0.00 3.51
1860 2688 2.707257 TCATTCATAGGCAGCATCCAGA 59.293 45.455 0.00 0.00 0.00 3.86
1861 2689 3.136009 TCATTCATAGGCAGCATCCAG 57.864 47.619 0.00 0.00 0.00 3.86
1862 2690 3.801307 ATCATTCATAGGCAGCATCCA 57.199 42.857 0.00 0.00 0.00 3.41
1863 2691 3.626670 GCTATCATTCATAGGCAGCATCC 59.373 47.826 0.00 0.00 35.77 3.51
1864 2692 3.309138 CGCTATCATTCATAGGCAGCATC 59.691 47.826 0.00 0.00 35.77 3.91
1865 2693 3.268330 CGCTATCATTCATAGGCAGCAT 58.732 45.455 0.00 0.00 35.77 3.79
1866 2694 2.613725 CCGCTATCATTCATAGGCAGCA 60.614 50.000 0.00 0.00 35.77 4.41
1867 2695 2.005451 CCGCTATCATTCATAGGCAGC 58.995 52.381 0.00 0.00 35.77 5.25
1868 2696 2.005451 GCCGCTATCATTCATAGGCAG 58.995 52.381 0.00 0.00 35.77 4.85
1869 2697 1.625315 AGCCGCTATCATTCATAGGCA 59.375 47.619 6.34 0.00 35.77 4.75
1870 2698 2.393271 AGCCGCTATCATTCATAGGC 57.607 50.000 0.00 0.00 35.77 3.93
1871 2699 3.434641 CACAAGCCGCTATCATTCATAGG 59.565 47.826 0.00 0.00 35.77 2.57
1872 2700 4.309933 TCACAAGCCGCTATCATTCATAG 58.690 43.478 0.00 0.00 38.06 2.23
1873 2701 4.335400 TCACAAGCCGCTATCATTCATA 57.665 40.909 0.00 0.00 0.00 2.15
1874 2702 3.198409 TCACAAGCCGCTATCATTCAT 57.802 42.857 0.00 0.00 0.00 2.57
1875 2703 2.689553 TCACAAGCCGCTATCATTCA 57.310 45.000 0.00 0.00 0.00 2.57
1876 2704 2.350197 GCATCACAAGCCGCTATCATTC 60.350 50.000 0.00 0.00 0.00 2.67
1877 2705 1.605710 GCATCACAAGCCGCTATCATT 59.394 47.619 0.00 0.00 0.00 2.57
1878 2706 1.233019 GCATCACAAGCCGCTATCAT 58.767 50.000 0.00 0.00 0.00 2.45
1879 2707 0.107752 TGCATCACAAGCCGCTATCA 60.108 50.000 0.00 0.00 0.00 2.15
1880 2708 1.016627 TTGCATCACAAGCCGCTATC 58.983 50.000 0.00 0.00 33.24 2.08
1881 2709 1.335810 CATTGCATCACAAGCCGCTAT 59.664 47.619 0.00 0.00 42.87 2.97
1882 2710 0.734309 CATTGCATCACAAGCCGCTA 59.266 50.000 0.00 0.00 42.87 4.26
1883 2711 1.246056 ACATTGCATCACAAGCCGCT 61.246 50.000 0.00 0.00 42.87 5.52
1884 2712 0.388907 AACATTGCATCACAAGCCGC 60.389 50.000 0.00 0.00 42.87 6.53
1885 2713 1.987770 GAAACATTGCATCACAAGCCG 59.012 47.619 0.00 0.00 42.87 5.52
1886 2714 3.308438 AGAAACATTGCATCACAAGCC 57.692 42.857 0.00 0.00 42.87 4.35
1887 2715 5.865552 ACAATAGAAACATTGCATCACAAGC 59.134 36.000 0.00 0.00 42.87 4.01
1888 2716 7.383029 ACAACAATAGAAACATTGCATCACAAG 59.617 33.333 0.00 0.00 42.87 3.16
1889 2717 7.208777 ACAACAATAGAAACATTGCATCACAA 58.791 30.769 0.00 0.00 44.01 3.33
1890 2718 6.747125 ACAACAATAGAAACATTGCATCACA 58.253 32.000 0.00 0.00 39.13 3.58
1891 2719 7.061441 CAGACAACAATAGAAACATTGCATCAC 59.939 37.037 0.00 0.00 39.13 3.06
1892 2720 7.085746 CAGACAACAATAGAAACATTGCATCA 58.914 34.615 0.00 0.00 39.13 3.07
1893 2721 7.086376 ACAGACAACAATAGAAACATTGCATC 58.914 34.615 0.00 0.00 39.13 3.91
1894 2722 6.985117 ACAGACAACAATAGAAACATTGCAT 58.015 32.000 0.00 0.00 39.13 3.96
1895 2723 6.389830 ACAGACAACAATAGAAACATTGCA 57.610 33.333 0.00 0.00 39.13 4.08
1896 2724 6.917477 TGAACAGACAACAATAGAAACATTGC 59.083 34.615 0.00 0.00 39.13 3.56
1897 2725 8.854979 TTGAACAGACAACAATAGAAACATTG 57.145 30.769 0.00 0.00 40.93 2.82
1898 2726 9.467258 CATTGAACAGACAACAATAGAAACATT 57.533 29.630 0.00 0.00 33.73 2.71
1899 2727 8.084073 CCATTGAACAGACAACAATAGAAACAT 58.916 33.333 0.00 0.00 33.73 2.71
1900 2728 7.424803 CCATTGAACAGACAACAATAGAAACA 58.575 34.615 0.00 0.00 33.73 2.83
1901 2729 6.863126 CCCATTGAACAGACAACAATAGAAAC 59.137 38.462 0.00 0.00 33.73 2.78
1902 2730 6.015519 CCCCATTGAACAGACAACAATAGAAA 60.016 38.462 0.00 0.00 33.73 2.52
1903 2731 5.476599 CCCCATTGAACAGACAACAATAGAA 59.523 40.000 0.00 0.00 33.73 2.10
1904 2732 5.009631 CCCCATTGAACAGACAACAATAGA 58.990 41.667 0.00 0.00 33.73 1.98
1905 2733 5.009631 TCCCCATTGAACAGACAACAATAG 58.990 41.667 0.00 0.00 33.73 1.73
1910 2738 2.420022 CGATCCCCATTGAACAGACAAC 59.580 50.000 0.00 0.00 32.50 3.32
1954 2782 2.618053 CCTAGCTAGTTCCAAACCACG 58.382 52.381 19.31 0.00 0.00 4.94
1981 3078 4.573201 CCCTTCATAAAAAGCATGCCAATG 59.427 41.667 15.66 11.02 36.82 2.82
1999 3105 6.471146 TCTACACCTATCGTAGTATCCCTTC 58.529 44.000 0.00 0.00 38.02 3.46
2031 3140 4.250570 CGATGAATCGTGGAAGAAACAG 57.749 45.455 4.53 0.00 44.74 3.16
2184 3510 7.519649 GCTAATAAGCTAGTTCTTGCATCCAAG 60.520 40.741 8.65 0.00 45.76 3.61
2238 3755 7.819415 TCATGAAAGAAATAGCCCATCTATACG 59.181 37.037 0.00 0.00 37.01 3.06
2329 3846 3.742369 GCATCACAATTCCCAAACTTGTG 59.258 43.478 8.04 8.04 46.99 3.33
2445 3966 9.442047 AAAGAAATAGTCAATCTACACCTCAAG 57.558 33.333 0.00 0.00 0.00 3.02
2448 3969 9.436957 TTGAAAGAAATAGTCAATCTACACCTC 57.563 33.333 0.00 0.00 0.00 3.85
2450 3971 9.436957 TCTTGAAAGAAATAGTCAATCTACACC 57.563 33.333 0.00 0.00 31.21 4.16
2481 4028 4.394610 TGTAAACAACTGCATGCATATCGT 59.605 37.500 22.97 12.93 0.00 3.73
2486 4033 4.524316 ACATGTAAACAACTGCATGCAT 57.476 36.364 22.97 7.74 41.51 3.96
2487 4034 4.319139 AACATGTAAACAACTGCATGCA 57.681 36.364 21.29 21.29 41.51 3.96
2489 4036 7.809331 AGATACAAACATGTAAACAACTGCATG 59.191 33.333 0.00 0.00 42.93 4.06
2727 4286 5.306937 ACATGCATCCATTTCATTGATCCAT 59.693 36.000 0.00 0.00 0.00 3.41
2728 4287 4.651962 ACATGCATCCATTTCATTGATCCA 59.348 37.500 0.00 0.00 0.00 3.41
2729 4288 5.010719 AGACATGCATCCATTTCATTGATCC 59.989 40.000 0.00 0.00 31.94 3.36
2730 4289 6.085555 AGACATGCATCCATTTCATTGATC 57.914 37.500 0.00 0.00 31.94 2.92
2733 4292 5.769367 CCTAGACATGCATCCATTTCATTG 58.231 41.667 0.00 0.00 31.94 2.82
2736 4295 3.216800 GCCTAGACATGCATCCATTTCA 58.783 45.455 0.00 0.00 31.94 2.69
2737 4296 3.216800 TGCCTAGACATGCATCCATTTC 58.783 45.455 0.00 0.00 31.31 2.17
2740 4299 2.374170 TCATGCCTAGACATGCATCCAT 59.626 45.455 13.72 0.00 45.98 3.41
2742 4301 2.556144 TCATGCCTAGACATGCATCC 57.444 50.000 13.72 0.00 45.98 3.51
2743 4302 4.081254 TCCTATCATGCCTAGACATGCATC 60.081 45.833 13.72 0.00 45.98 3.91
2755 4314 3.297134 TTCCCAAGTTCCTATCATGCC 57.703 47.619 0.00 0.00 0.00 4.40
2765 4324 5.922544 CAGAAACATCACAATTCCCAAGTTC 59.077 40.000 0.00 0.00 0.00 3.01
2767 4326 4.895297 ACAGAAACATCACAATTCCCAAGT 59.105 37.500 0.00 0.00 0.00 3.16
2799 4362 5.011329 ACATATGCATCAATCCCCATCAAAC 59.989 40.000 0.19 0.00 0.00 2.93
2844 4407 8.671987 TCCCTGGATCCAAATTAAACATTTAA 57.328 30.769 17.00 0.00 37.08 1.52
2845 4408 8.671987 TTCCCTGGATCCAAATTAAACATTTA 57.328 30.769 17.00 0.00 0.00 1.40
2846 4409 7.566658 TTCCCTGGATCCAAATTAAACATTT 57.433 32.000 17.00 0.00 0.00 2.32
2847 4410 7.754091 ATTCCCTGGATCCAAATTAAACATT 57.246 32.000 17.00 0.00 0.00 2.71
2848 4411 7.754091 AATTCCCTGGATCCAAATTAAACAT 57.246 32.000 17.00 0.00 0.00 2.71
2849 4412 7.147742 GCTAATTCCCTGGATCCAAATTAAACA 60.148 37.037 22.02 9.50 0.00 2.83
2850 4413 7.069950 AGCTAATTCCCTGGATCCAAATTAAAC 59.930 37.037 22.02 18.27 0.00 2.01
2851 4414 7.132128 AGCTAATTCCCTGGATCCAAATTAAA 58.868 34.615 22.02 11.96 0.00 1.52
2976 4713 1.655484 CTTGTGCCATGCATAGACGA 58.345 50.000 0.00 0.00 41.91 4.20
2977 4714 0.028505 GCTTGTGCCATGCATAGACG 59.971 55.000 0.00 0.00 41.91 4.18
2978 4715 1.386533 AGCTTGTGCCATGCATAGAC 58.613 50.000 0.00 0.00 41.91 2.59
3022 4764 2.455674 TCTCCATCAAACAGACCACG 57.544 50.000 0.00 0.00 0.00 4.94
3061 4808 4.217118 GTGGATCAAAAGCACACAGAGATT 59.783 41.667 0.00 0.00 32.58 2.40
3473 5635 4.995124 TGCAAGTAGACCTCGAATACTTC 58.005 43.478 8.31 5.95 37.59 3.01
3496 5666 7.609146 AGAGCACTATTTGACTTGATCATTCAA 59.391 33.333 13.66 13.66 39.54 2.69
3513 5690 5.365021 ACATAGGAAAGCAAGAGCACTAT 57.635 39.130 0.00 0.00 45.49 2.12
3534 5711 5.586243 ACCATAGTACATGCATGACAGAAAC 59.414 40.000 32.75 17.97 0.00 2.78
3643 6074 5.516339 CCCAACAAAATTTCGTCTATGATGC 59.484 40.000 0.00 0.00 0.00 3.91
3717 6171 3.097614 AGCGAGTAGGTGACAAGGTAAT 58.902 45.455 0.00 0.00 0.00 1.89
3719 6173 2.211250 AGCGAGTAGGTGACAAGGTA 57.789 50.000 0.00 0.00 0.00 3.08
3728 6182 1.202580 GCATGGATTCAGCGAGTAGGT 60.203 52.381 0.00 0.00 0.00 3.08
3729 6183 1.069823 AGCATGGATTCAGCGAGTAGG 59.930 52.381 0.00 0.00 0.00 3.18
3731 6185 2.093500 ACAAGCATGGATTCAGCGAGTA 60.093 45.455 0.00 0.00 0.00 2.59
3734 6188 1.469703 CAACAAGCATGGATTCAGCGA 59.530 47.619 0.00 0.00 0.00 4.93
3735 6189 1.200716 ACAACAAGCATGGATTCAGCG 59.799 47.619 0.00 0.00 0.00 5.18
3736 6190 2.229543 TGACAACAAGCATGGATTCAGC 59.770 45.455 0.00 0.00 0.00 4.26
3737 6191 3.253921 TGTGACAACAAGCATGGATTCAG 59.746 43.478 0.00 0.00 31.82 3.02
3830 6288 1.686115 GGGGGCTGCAACTATGAACAT 60.686 52.381 0.50 0.00 0.00 2.71
3856 6314 1.536662 AACTTCTCTCAGGCCGGGT 60.537 57.895 2.18 0.00 0.00 5.28
3858 6316 0.108424 CTCAACTTCTCTCAGGCCGG 60.108 60.000 0.00 0.00 0.00 6.13
3895 6358 6.455246 GCTTTGTATGTCTTTAACTCTACCGC 60.455 42.308 0.00 0.00 0.00 5.68
3897 6360 7.900782 TGCTTTGTATGTCTTTAACTCTACC 57.099 36.000 0.00 0.00 0.00 3.18
3933 6397 3.515104 CCTTGCCCAATTTACATTCAGGT 59.485 43.478 0.00 0.00 0.00 4.00
4002 6472 4.580044 CGATGCATGGTCGCGTGC 62.580 66.667 2.46 12.03 41.61 5.34
4008 6478 3.009140 CTGCGACGATGCATGGTC 58.991 61.111 26.66 26.66 45.26 4.02
4009 6479 3.197790 GCTGCGACGATGCATGGT 61.198 61.111 14.74 14.74 45.26 3.55
4010 6480 3.164390 CTGCTGCGACGATGCATGG 62.164 63.158 2.46 5.24 45.26 3.66
4011 6481 2.323447 CTGCTGCGACGATGCATG 59.677 61.111 2.46 0.00 45.26 4.06
4012 6482 2.893895 CCTGCTGCGACGATGCAT 60.894 61.111 13.87 0.00 45.26 3.96
4014 6484 4.819761 TCCCTGCTGCGACGATGC 62.820 66.667 0.00 1.87 0.00 3.91
4015 6485 2.360949 ATCTCCCTGCTGCGACGATG 62.361 60.000 0.00 0.00 0.00 3.84
4021 6491 0.465097 AAATCCATCTCCCTGCTGCG 60.465 55.000 0.00 0.00 0.00 5.18
4026 6496 4.502950 GCAGTAGAGAAATCCATCTCCCTG 60.503 50.000 13.22 13.22 45.70 4.45
4034 6504 3.261643 TGAAGCTGCAGTAGAGAAATCCA 59.738 43.478 16.64 0.00 0.00 3.41
4058 6528 5.803461 CACATATCAAAAGTGCTGAACATGG 59.197 40.000 0.00 0.00 0.00 3.66
4092 6562 1.549203 CCTCAACCAATGTCCAAGGG 58.451 55.000 0.00 0.00 0.00 3.95
4099 6569 1.158007 AACCTCCCCTCAACCAATGT 58.842 50.000 0.00 0.00 0.00 2.71
4101 6571 0.409484 CCAACCTCCCCTCAACCAAT 59.591 55.000 0.00 0.00 0.00 3.16
4105 6575 1.064825 TTCTCCAACCTCCCCTCAAC 58.935 55.000 0.00 0.00 0.00 3.18
4108 6578 0.840617 GGATTCTCCAACCTCCCCTC 59.159 60.000 0.00 0.00 36.28 4.30
4109 6579 0.983378 CGGATTCTCCAACCTCCCCT 60.983 60.000 0.00 0.00 35.91 4.79
4110 6580 0.981277 TCGGATTCTCCAACCTCCCC 60.981 60.000 0.00 0.00 35.91 4.81
4111 6581 0.909623 TTCGGATTCTCCAACCTCCC 59.090 55.000 0.00 0.00 35.91 4.30
4112 6582 1.134371 CCTTCGGATTCTCCAACCTCC 60.134 57.143 0.00 0.00 35.91 4.30
4113 6583 1.831736 TCCTTCGGATTCTCCAACCTC 59.168 52.381 0.00 0.00 35.91 3.85
4114 6584 1.952621 TCCTTCGGATTCTCCAACCT 58.047 50.000 0.00 0.00 35.91 3.50
4135 6605 1.211703 TGAAGAAAGTGCCTGTGTGGA 59.788 47.619 0.00 0.00 38.35 4.02
4172 6642 4.752604 GCCTTTATCCCGCAAAAAGAAAAA 59.247 37.500 0.00 0.00 33.05 1.94
4173 6643 4.311606 GCCTTTATCCCGCAAAAAGAAAA 58.688 39.130 0.00 0.00 33.05 2.29
4174 6644 3.306433 GGCCTTTATCCCGCAAAAAGAAA 60.306 43.478 0.00 0.00 33.05 2.52
4175 6645 2.232696 GGCCTTTATCCCGCAAAAAGAA 59.767 45.455 0.00 0.00 33.05 2.52
4176 6646 1.822371 GGCCTTTATCCCGCAAAAAGA 59.178 47.619 0.00 0.00 33.05 2.52
4177 6647 1.824852 AGGCCTTTATCCCGCAAAAAG 59.175 47.619 0.00 0.00 0.00 2.27
4178 6648 1.931635 AGGCCTTTATCCCGCAAAAA 58.068 45.000 0.00 0.00 0.00 1.94
4179 6649 2.025699 ACTAGGCCTTTATCCCGCAAAA 60.026 45.455 12.58 0.00 0.00 2.44
4180 6650 1.562475 ACTAGGCCTTTATCCCGCAAA 59.438 47.619 12.58 0.00 0.00 3.68
4181 6651 1.209621 ACTAGGCCTTTATCCCGCAA 58.790 50.000 12.58 0.00 0.00 4.85
4182 6652 1.134220 CAACTAGGCCTTTATCCCGCA 60.134 52.381 12.58 0.00 0.00 5.69
4184 6654 1.134220 TGCAACTAGGCCTTTATCCCG 60.134 52.381 12.58 0.00 0.00 5.14
4185 6655 2.729028 TGCAACTAGGCCTTTATCCC 57.271 50.000 12.58 0.00 0.00 3.85
4186 6656 3.954258 ACATTGCAACTAGGCCTTTATCC 59.046 43.478 12.58 0.00 0.00 2.59
4187 6657 4.734695 GCACATTGCAACTAGGCCTTTATC 60.735 45.833 12.58 0.00 44.26 1.75
4188 6658 3.131046 GCACATTGCAACTAGGCCTTTAT 59.869 43.478 12.58 0.00 44.26 1.40
4208 6678 2.092484 TCCATTGAAGATCCGGATTGCA 60.092 45.455 20.22 14.02 0.00 4.08
4210 6680 5.343249 GTTTTCCATTGAAGATCCGGATTG 58.657 41.667 20.22 11.49 0.00 2.67
4212 6682 3.954258 GGTTTTCCATTGAAGATCCGGAT 59.046 43.478 19.21 19.21 40.31 4.18
4213 6683 3.245087 TGGTTTTCCATTGAAGATCCGGA 60.245 43.478 6.61 6.61 46.22 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.