Multiple sequence alignment - TraesCS2A01G458400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G458400 chr2A 100.000 2992 0 0 1 2992 705994983 705991992 0.000000e+00 5526
1 TraesCS2A01G458400 chr2A 100.000 2249 0 0 3644 5892 705991340 705989092 0.000000e+00 4154
2 TraesCS2A01G458400 chr2A 98.349 1938 23 2 3963 5892 36932208 36930272 0.000000e+00 3393
3 TraesCS2A01G458400 chr2A 99.085 656 5 1 1392 2047 36932847 36932193 0.000000e+00 1177
4 TraesCS2A01G458400 chr2A 99.381 485 3 0 896 1380 36933302 36932818 0.000000e+00 880
5 TraesCS2A01G458400 chr2A 80.612 490 75 13 1 476 673957042 673956559 1.560000e-95 361
6 TraesCS2A01G458400 chr2A 97.260 73 2 0 672 744 36933375 36933303 2.230000e-24 124
7 TraesCS2A01G458400 chr6A 98.297 1938 24 2 3963 5892 60426564 60424628 0.000000e+00 3387
8 TraesCS2A01G458400 chr6A 97.740 708 15 1 673 1380 60427880 60427174 0.000000e+00 1218
9 TraesCS2A01G458400 chr6A 99.238 656 4 1 1392 2047 60427203 60426549 0.000000e+00 1182
10 TraesCS2A01G458400 chr6A 84.347 658 91 10 673 1324 162913034 162912383 8.330000e-178 634
11 TraesCS2A01G458400 chr7A 97.575 1938 38 2 3963 5892 419013836 419015772 0.000000e+00 3310
12 TraesCS2A01G458400 chr7A 97.207 716 17 3 667 1380 419012512 419013226 0.000000e+00 1208
13 TraesCS2A01G458400 chr7A 98.780 656 7 1 1392 2047 419013197 419013851 0.000000e+00 1166
14 TraesCS2A01G458400 chr7A 80.275 218 34 8 1545 1761 200028622 200028413 7.910000e-34 156
15 TraesCS2A01G458400 chr7A 74.919 307 73 4 5191 5495 670783398 670783094 2.860000e-28 137
16 TraesCS2A01G458400 chr7A 73.616 307 77 4 5191 5495 670797496 670797800 1.340000e-21 115
17 TraesCS2A01G458400 chr6B 89.622 1956 175 15 3957 5892 664308352 664310299 0.000000e+00 2462
18 TraesCS2A01G458400 chr6B 96.832 947 28 2 2047 2992 20342125 20343070 0.000000e+00 1581
19 TraesCS2A01G458400 chr6B 96.639 238 8 0 3679 3916 20343479 20343716 4.280000e-106 396
20 TraesCS2A01G458400 chr6B 86.072 359 41 7 673 1024 664306269 664306625 1.550000e-100 377
21 TraesCS2A01G458400 chr6B 92.547 161 10 2 1035 1194 664307766 664307925 4.590000e-56 230
22 TraesCS2A01G458400 chr4A 96.960 954 27 2 2040 2992 648757040 648757992 0.000000e+00 1600
23 TraesCS2A01G458400 chr4A 97.436 273 7 0 3644 3916 648758044 648758316 3.220000e-127 466
24 TraesCS2A01G458400 chr1B 96.585 937 30 2 2040 2976 660738788 660737854 0.000000e+00 1552
25 TraesCS2A01G458400 chr1B 94.422 251 12 1 3665 3915 660737506 660737258 9.260000e-103 385
26 TraesCS2A01G458400 chr1B 88.210 229 25 2 4332 4558 197751559 197751787 7.520000e-69 272
27 TraesCS2A01G458400 chr3B 96.356 933 33 1 2046 2978 765666119 765665188 0.000000e+00 1533
28 TraesCS2A01G458400 chr3B 95.702 954 38 3 2036 2987 38427389 38426437 0.000000e+00 1531
29 TraesCS2A01G458400 chr3B 95.371 929 41 2 2046 2974 328484026 328484952 0.000000e+00 1476
30 TraesCS2A01G458400 chr3B 96.522 230 8 0 3644 3873 765664672 765664443 1.200000e-101 381
31 TraesCS2A01G458400 chr3B 95.495 222 10 0 3644 3865 38425980 38425759 7.260000e-94 355
32 TraesCS2A01G458400 chr7B 96.725 916 27 3 2047 2962 595646725 595647637 0.000000e+00 1522
33 TraesCS2A01G458400 chr7B 95.393 955 41 3 2040 2992 674789699 674788746 0.000000e+00 1517
34 TraesCS2A01G458400 chr7B 88.438 320 30 3 3957 4275 706709554 706709867 4.310000e-101 379
35 TraesCS2A01G458400 chr7B 95.633 229 10 0 3644 3872 223193826 223193598 9.330000e-98 368
36 TraesCS2A01G458400 chr7B 74.653 288 69 4 5191 5476 595169569 595169854 2.230000e-24 124
37 TraesCS2A01G458400 chrUn 94.804 943 45 4 2051 2992 271165216 271166155 0.000000e+00 1467
38 TraesCS2A01G458400 chrUn 97.297 222 6 0 3644 3865 416902812 416902591 1.550000e-100 377
39 TraesCS2A01G458400 chr5A 85.508 1249 139 27 3985 5208 556936856 556938087 0.000000e+00 1266
40 TraesCS2A01G458400 chr2B 90.122 658 47 5 1 645 678007458 678006806 0.000000e+00 839
41 TraesCS2A01G458400 chr2B 90.943 541 32 5 1 528 677964161 677964697 0.000000e+00 712
42 TraesCS2A01G458400 chr2B 81.754 422 70 7 1 421 628208105 628207690 4.370000e-91 346
43 TraesCS2A01G458400 chr2B 80.806 422 72 7 1 420 628397646 628397232 7.370000e-84 322
44 TraesCS2A01G458400 chr2D 89.047 703 39 12 1 669 565687914 565687216 0.000000e+00 837
45 TraesCS2A01G458400 chr2D 90.147 477 30 6 206 669 565742925 565742453 6.530000e-169 604
46 TraesCS2A01G458400 chr2D 83.068 502 54 12 10 480 565859255 565858754 1.520000e-115 427
47 TraesCS2A01G458400 chr2D 80.745 483 75 12 1 470 529036509 529036032 1.560000e-95 361
48 TraesCS2A01G458400 chr2D 81.991 422 69 7 1 421 529013125 529012710 9.390000e-93 351
49 TraesCS2A01G458400 chr2D 94.619 223 10 2 1 223 565743486 565743266 1.570000e-90 344
50 TraesCS2A01G458400 chr5B 93.617 282 16 2 3957 4236 679386797 679386516 2.540000e-113 420
51 TraesCS2A01G458400 chr5B 87.234 235 28 2 4332 4564 18417794 18417560 3.500000e-67 267
52 TraesCS2A01G458400 chr5B 91.026 78 6 1 1475 1551 679387330 679387253 2.900000e-18 104
53 TraesCS2A01G458400 chr3A 93.066 274 18 1 3644 3917 744770549 744770821 3.310000e-107 399
54 TraesCS2A01G458400 chr1A 93.833 227 13 1 3646 3872 589505271 589505496 2.030000e-89 340
55 TraesCS2A01G458400 chr6D 88.511 235 24 3 4332 4564 74902008 74901775 1.250000e-71 281
56 TraesCS2A01G458400 chr6D 89.593 221 20 3 4332 4550 74900324 74900543 1.620000e-70 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G458400 chr2A 705989092 705994983 5891 True 4840.000000 5526 100.000000 1 5892 2 chr2A.!!$R3 5891
1 TraesCS2A01G458400 chr2A 36930272 36933375 3103 True 1393.500000 3393 98.518750 672 5892 4 chr2A.!!$R2 5220
2 TraesCS2A01G458400 chr6A 60424628 60427880 3252 True 1929.000000 3387 98.425000 673 5892 3 chr6A.!!$R2 5219
3 TraesCS2A01G458400 chr6A 162912383 162913034 651 True 634.000000 634 84.347000 673 1324 1 chr6A.!!$R1 651
4 TraesCS2A01G458400 chr7A 419012512 419015772 3260 False 1894.666667 3310 97.854000 667 5892 3 chr7A.!!$F2 5225
5 TraesCS2A01G458400 chr6B 664306269 664310299 4030 False 1023.000000 2462 89.413667 673 5892 3 chr6B.!!$F2 5219
6 TraesCS2A01G458400 chr6B 20342125 20343716 1591 False 988.500000 1581 96.735500 2047 3916 2 chr6B.!!$F1 1869
7 TraesCS2A01G458400 chr4A 648757040 648758316 1276 False 1033.000000 1600 97.198000 2040 3916 2 chr4A.!!$F1 1876
8 TraesCS2A01G458400 chr1B 660737258 660738788 1530 True 968.500000 1552 95.503500 2040 3915 2 chr1B.!!$R1 1875
9 TraesCS2A01G458400 chr3B 328484026 328484952 926 False 1476.000000 1476 95.371000 2046 2974 1 chr3B.!!$F1 928
10 TraesCS2A01G458400 chr3B 765664443 765666119 1676 True 957.000000 1533 96.439000 2046 3873 2 chr3B.!!$R2 1827
11 TraesCS2A01G458400 chr3B 38425759 38427389 1630 True 943.000000 1531 95.598500 2036 3865 2 chr3B.!!$R1 1829
12 TraesCS2A01G458400 chr7B 595646725 595647637 912 False 1522.000000 1522 96.725000 2047 2962 1 chr7B.!!$F2 915
13 TraesCS2A01G458400 chr7B 674788746 674789699 953 True 1517.000000 1517 95.393000 2040 2992 1 chr7B.!!$R2 952
14 TraesCS2A01G458400 chrUn 271165216 271166155 939 False 1467.000000 1467 94.804000 2051 2992 1 chrUn.!!$F1 941
15 TraesCS2A01G458400 chr5A 556936856 556938087 1231 False 1266.000000 1266 85.508000 3985 5208 1 chr5A.!!$F1 1223
16 TraesCS2A01G458400 chr2B 678006806 678007458 652 True 839.000000 839 90.122000 1 645 1 chr2B.!!$R3 644
17 TraesCS2A01G458400 chr2B 677964161 677964697 536 False 712.000000 712 90.943000 1 528 1 chr2B.!!$F1 527
18 TraesCS2A01G458400 chr2D 565687216 565687914 698 True 837.000000 837 89.047000 1 669 1 chr2D.!!$R3 668
19 TraesCS2A01G458400 chr2D 565742453 565743486 1033 True 474.000000 604 92.383000 1 669 2 chr2D.!!$R5 668
20 TraesCS2A01G458400 chr2D 565858754 565859255 501 True 427.000000 427 83.068000 10 480 1 chr2D.!!$R4 470
21 TraesCS2A01G458400 chr5B 679386516 679387330 814 True 262.000000 420 92.321500 1475 4236 2 chr5B.!!$R2 2761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 530 0.179108 AGTAGGCTCGATCGGCAAAC 60.179 55.000 23.67 20.04 0.00 2.93 F
1354 2642 0.032815 TGTGAGAACGACGATGCCAA 59.967 50.000 0.00 0.00 0.00 4.52 F
1355 2643 0.716108 GTGAGAACGACGATGCCAAG 59.284 55.000 0.00 0.00 0.00 3.61 F
1357 2645 0.737715 GAGAACGACGATGCCAAGCT 60.738 55.000 0.00 0.00 0.00 3.74 F
2851 4224 1.075525 CCCGGTAGGACCCAGATGA 60.076 63.158 0.00 0.00 41.02 2.92 F
3925 5300 0.755698 CTAGTCGCCTAGGCCTTCCA 60.756 60.000 28.09 8.72 37.59 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2443 3815 0.902531 GAGGTGAAGGTTGGGATCGA 59.097 55.000 0.00 0.0 0.00 3.59 R
2782 4155 0.543174 GTGTGGTGAGGAGGAGGAGT 60.543 60.000 0.00 0.0 0.00 3.85 R
2837 4210 1.411651 GGGCCTCATCTGGGTCCTAC 61.412 65.000 0.84 0.0 44.65 3.18 R
3793 5168 4.715130 CTCCCCCGTCCAGACCCA 62.715 72.222 0.00 0.0 0.00 4.51 R
3932 5307 0.188834 AATCTAGCGGGGGACTAGCT 59.811 55.000 0.00 0.0 44.07 3.32 R
5393 6979 0.881118 GCTTTGCCCATTTCTGTCGA 59.119 50.000 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.731700 CGGGTCGTATCACCGTCAT 59.268 57.895 0.00 0.00 42.53 3.06
143 144 1.077501 CATGGTTGATCCTGGCCGT 60.078 57.895 0.00 0.00 37.07 5.68
236 237 5.121811 GTCATATGTGAAAGCATCCTCTGT 58.878 41.667 1.90 0.00 35.80 3.41
246 247 6.372659 TGAAAGCATCCTCTGTAAGAACATTC 59.627 38.462 0.00 0.00 46.34 2.67
261 262 2.503331 ACATTCATGCAAAGACCGTGA 58.497 42.857 0.00 0.00 0.00 4.35
267 268 0.396435 TGCAAAGACCGTGATGACCT 59.604 50.000 0.00 0.00 0.00 3.85
272 273 0.393944 AGACCGTGATGACCTCGCTA 60.394 55.000 0.00 0.00 31.89 4.26
311 312 1.200716 CGCTGCAACAGGTTGAATGAT 59.799 47.619 15.88 0.00 42.93 2.45
318 319 2.241160 ACAGGTTGAATGATGCTTGCA 58.759 42.857 0.00 0.00 0.00 4.08
330 331 4.490743 TGATGCTTGCATTCAGTTCATTG 58.509 39.130 9.59 0.00 0.00 2.82
331 332 2.679450 TGCTTGCATTCAGTTCATTGC 58.321 42.857 0.00 0.00 35.67 3.56
335 336 1.820519 TGCATTCAGTTCATTGCCTCC 59.179 47.619 0.00 0.00 34.20 4.30
348 349 2.409870 GCCTCCTTGGATGCAACGG 61.410 63.158 11.19 2.40 38.35 4.44
349 350 1.299648 CCTCCTTGGATGCAACGGA 59.700 57.895 14.29 14.29 38.35 4.69
361 362 1.271325 TGCAACGGAACTGGATGATGT 60.271 47.619 0.00 0.00 0.00 3.06
368 369 3.062763 GGAACTGGATGATGTGATAGCG 58.937 50.000 0.00 0.00 0.00 4.26
371 372 2.288702 ACTGGATGATGTGATAGCGAGC 60.289 50.000 0.00 0.00 0.00 5.03
408 409 3.613432 GCTCAAAGCAACATCTCCTTTGG 60.613 47.826 11.12 5.10 43.33 3.28
421 422 5.744666 TCTCCTTTGGTTTTAGTTGAACG 57.255 39.130 0.00 0.00 0.00 3.95
422 423 5.430007 TCTCCTTTGGTTTTAGTTGAACGA 58.570 37.500 0.00 0.00 0.00 3.85
423 424 5.881443 TCTCCTTTGGTTTTAGTTGAACGAA 59.119 36.000 0.00 0.00 0.00 3.85
424 425 6.544564 TCTCCTTTGGTTTTAGTTGAACGAAT 59.455 34.615 0.00 0.00 0.00 3.34
425 426 7.716123 TCTCCTTTGGTTTTAGTTGAACGAATA 59.284 33.333 0.00 0.00 0.00 1.75
426 427 7.867752 TCCTTTGGTTTTAGTTGAACGAATAG 58.132 34.615 0.00 0.00 0.00 1.73
427 428 7.040961 TCCTTTGGTTTTAGTTGAACGAATAGG 60.041 37.037 0.00 0.00 31.95 2.57
428 429 5.616488 TGGTTTTAGTTGAACGAATAGGC 57.384 39.130 0.00 0.00 0.00 3.93
429 430 5.310451 TGGTTTTAGTTGAACGAATAGGCT 58.690 37.500 0.00 0.00 0.00 4.58
430 431 5.410439 TGGTTTTAGTTGAACGAATAGGCTC 59.590 40.000 0.00 0.00 0.00 4.70
431 432 5.445540 GGTTTTAGTTGAACGAATAGGCTCG 60.446 44.000 0.00 0.00 44.50 5.03
432 433 2.295253 AGTTGAACGAATAGGCTCGG 57.705 50.000 0.00 0.00 43.22 4.63
433 434 0.651031 GTTGAACGAATAGGCTCGGC 59.349 55.000 0.00 0.00 43.22 5.54
434 435 0.248012 TTGAACGAATAGGCTCGGCA 59.752 50.000 0.00 0.00 43.22 5.69
435 436 0.248012 TGAACGAATAGGCTCGGCAA 59.752 50.000 0.00 0.00 43.22 4.52
436 437 1.338294 TGAACGAATAGGCTCGGCAAA 60.338 47.619 0.00 0.00 43.22 3.68
437 438 1.940613 GAACGAATAGGCTCGGCAAAT 59.059 47.619 0.00 0.00 43.22 2.32
438 439 1.583054 ACGAATAGGCTCGGCAAATC 58.417 50.000 0.00 0.00 43.22 2.17
439 440 1.134521 ACGAATAGGCTCGGCAAATCA 60.135 47.619 0.00 0.00 43.22 2.57
440 441 1.939934 CGAATAGGCTCGGCAAATCAA 59.060 47.619 0.00 0.00 35.14 2.57
441 442 2.354510 CGAATAGGCTCGGCAAATCAAA 59.645 45.455 0.00 0.00 35.14 2.69
442 443 3.546815 CGAATAGGCTCGGCAAATCAAAG 60.547 47.826 0.00 0.00 35.14 2.77
443 444 2.489938 TAGGCTCGGCAAATCAAAGT 57.510 45.000 0.00 0.00 0.00 2.66
444 445 1.168714 AGGCTCGGCAAATCAAAGTC 58.831 50.000 0.00 0.00 0.00 3.01
445 446 0.179189 GGCTCGGCAAATCAAAGTCG 60.179 55.000 0.00 0.00 0.00 4.18
446 447 0.517316 GCTCGGCAAATCAAAGTCGT 59.483 50.000 0.00 0.00 33.97 4.34
447 448 1.464189 GCTCGGCAAATCAAAGTCGTC 60.464 52.381 0.00 0.00 33.97 4.20
448 449 1.798223 CTCGGCAAATCAAAGTCGTCA 59.202 47.619 0.00 0.00 33.97 4.35
449 450 1.798223 TCGGCAAATCAAAGTCGTCAG 59.202 47.619 0.00 0.00 33.97 3.51
450 451 1.531149 CGGCAAATCAAAGTCGTCAGT 59.469 47.619 0.00 0.00 0.00 3.41
451 452 2.032030 CGGCAAATCAAAGTCGTCAGTT 60.032 45.455 0.00 0.00 0.00 3.16
452 453 3.555518 GGCAAATCAAAGTCGTCAGTTC 58.444 45.455 0.00 0.00 0.00 3.01
453 454 3.003275 GGCAAATCAAAGTCGTCAGTTCA 59.997 43.478 0.00 0.00 0.00 3.18
454 455 4.320494 GGCAAATCAAAGTCGTCAGTTCAT 60.320 41.667 0.00 0.00 0.00 2.57
455 456 5.106712 GGCAAATCAAAGTCGTCAGTTCATA 60.107 40.000 0.00 0.00 0.00 2.15
456 457 6.403636 GGCAAATCAAAGTCGTCAGTTCATAT 60.404 38.462 0.00 0.00 0.00 1.78
457 458 7.023575 GCAAATCAAAGTCGTCAGTTCATATT 58.976 34.615 0.00 0.00 0.00 1.28
458 459 7.007725 GCAAATCAAAGTCGTCAGTTCATATTG 59.992 37.037 0.00 0.00 0.00 1.90
459 460 6.668541 ATCAAAGTCGTCAGTTCATATTGG 57.331 37.500 0.00 0.00 0.00 3.16
460 461 5.547465 TCAAAGTCGTCAGTTCATATTGGT 58.453 37.500 0.00 0.00 0.00 3.67
461 462 6.693466 TCAAAGTCGTCAGTTCATATTGGTA 58.307 36.000 0.00 0.00 0.00 3.25
462 463 6.811665 TCAAAGTCGTCAGTTCATATTGGTAG 59.188 38.462 0.00 0.00 0.00 3.18
463 464 5.916661 AGTCGTCAGTTCATATTGGTAGT 57.083 39.130 0.00 0.00 0.00 2.73
464 465 6.282199 AGTCGTCAGTTCATATTGGTAGTT 57.718 37.500 0.00 0.00 0.00 2.24
465 466 6.698380 AGTCGTCAGTTCATATTGGTAGTTT 58.302 36.000 0.00 0.00 0.00 2.66
466 467 7.833786 AGTCGTCAGTTCATATTGGTAGTTTA 58.166 34.615 0.00 0.00 0.00 2.01
467 468 7.974501 AGTCGTCAGTTCATATTGGTAGTTTAG 59.025 37.037 0.00 0.00 0.00 1.85
468 469 7.758528 GTCGTCAGTTCATATTGGTAGTTTAGT 59.241 37.037 0.00 0.00 0.00 2.24
469 470 7.758076 TCGTCAGTTCATATTGGTAGTTTAGTG 59.242 37.037 0.00 0.00 0.00 2.74
470 471 7.464178 CGTCAGTTCATATTGGTAGTTTAGTGC 60.464 40.741 0.00 0.00 0.00 4.40
471 472 7.333423 GTCAGTTCATATTGGTAGTTTAGTGCA 59.667 37.037 0.00 0.00 0.00 4.57
472 473 7.880713 TCAGTTCATATTGGTAGTTTAGTGCAA 59.119 33.333 0.00 0.00 0.00 4.08
473 474 8.511321 CAGTTCATATTGGTAGTTTAGTGCAAA 58.489 33.333 0.00 0.00 0.00 3.68
474 475 8.512138 AGTTCATATTGGTAGTTTAGTGCAAAC 58.488 33.333 0.00 0.00 45.85 2.93
490 491 9.764363 TTAGTGCAAACAGTAAGATATATCAGG 57.236 33.333 15.08 2.28 36.89 3.86
491 492 8.023021 AGTGCAAACAGTAAGATATATCAGGA 57.977 34.615 15.08 0.00 0.00 3.86
492 493 8.654997 AGTGCAAACAGTAAGATATATCAGGAT 58.345 33.333 15.08 1.29 0.00 3.24
493 494 8.715998 GTGCAAACAGTAAGATATATCAGGATG 58.284 37.037 15.08 10.12 37.54 3.51
494 495 8.432013 TGCAAACAGTAAGATATATCAGGATGT 58.568 33.333 15.08 10.68 37.40 3.06
495 496 9.929180 GCAAACAGTAAGATATATCAGGATGTA 57.071 33.333 15.08 0.00 37.40 2.29
519 520 9.283420 GTAAGTTAGTTTTACTTAGTAGGCTCG 57.717 37.037 0.00 0.00 38.41 5.03
520 521 7.693969 AGTTAGTTTTACTTAGTAGGCTCGA 57.306 36.000 0.00 0.00 0.00 4.04
521 522 8.291191 AGTTAGTTTTACTTAGTAGGCTCGAT 57.709 34.615 0.00 0.00 0.00 3.59
522 523 8.404765 AGTTAGTTTTACTTAGTAGGCTCGATC 58.595 37.037 0.00 0.00 0.00 3.69
523 524 5.819059 AGTTTTACTTAGTAGGCTCGATCG 58.181 41.667 9.36 9.36 0.00 3.69
524 525 4.825546 TTTACTTAGTAGGCTCGATCGG 57.174 45.455 16.41 7.26 0.00 4.18
525 526 0.953003 ACTTAGTAGGCTCGATCGGC 59.047 55.000 16.41 16.79 0.00 5.54
526 527 0.952280 CTTAGTAGGCTCGATCGGCA 59.048 55.000 23.67 3.89 0.00 5.69
527 528 1.337071 CTTAGTAGGCTCGATCGGCAA 59.663 52.381 23.67 12.50 0.00 4.52
528 529 1.395635 TAGTAGGCTCGATCGGCAAA 58.604 50.000 23.67 12.22 0.00 3.68
529 530 0.179108 AGTAGGCTCGATCGGCAAAC 60.179 55.000 23.67 20.04 0.00 2.93
530 531 0.459585 GTAGGCTCGATCGGCAAACA 60.460 55.000 23.67 1.85 0.00 2.83
531 532 0.248012 TAGGCTCGATCGGCAAACAA 59.752 50.000 23.67 1.18 0.00 2.83
532 533 0.605319 AGGCTCGATCGGCAAACAAA 60.605 50.000 23.67 0.50 0.00 2.83
533 534 0.179189 GGCTCGATCGGCAAACAAAG 60.179 55.000 23.67 10.45 0.00 2.77
534 535 0.517316 GCTCGATCGGCAAACAAAGT 59.483 50.000 16.41 0.00 0.00 2.66
535 536 1.464189 GCTCGATCGGCAAACAAAGTC 60.464 52.381 16.41 0.00 0.00 3.01
536 537 2.069273 CTCGATCGGCAAACAAAGTCT 58.931 47.619 16.41 0.00 0.00 3.24
537 538 2.480419 CTCGATCGGCAAACAAAGTCTT 59.520 45.455 16.41 0.00 0.00 3.01
538 539 2.875933 TCGATCGGCAAACAAAGTCTTT 59.124 40.909 16.41 0.00 0.00 2.52
539 540 4.059511 TCGATCGGCAAACAAAGTCTTTA 58.940 39.130 16.41 0.00 0.00 1.85
540 541 4.693566 TCGATCGGCAAACAAAGTCTTTAT 59.306 37.500 16.41 0.00 0.00 1.40
541 542 5.180492 TCGATCGGCAAACAAAGTCTTTATT 59.820 36.000 16.41 0.00 0.00 1.40
542 543 5.856455 CGATCGGCAAACAAAGTCTTTATTT 59.144 36.000 7.38 0.00 0.00 1.40
543 544 6.032460 CGATCGGCAAACAAAGTCTTTATTTC 59.968 38.462 7.38 0.00 0.00 2.17
544 545 6.137794 TCGGCAAACAAAGTCTTTATTTCA 57.862 33.333 0.00 0.00 0.00 2.69
545 546 6.744112 TCGGCAAACAAAGTCTTTATTTCAT 58.256 32.000 0.00 0.00 0.00 2.57
546 547 7.877003 TCGGCAAACAAAGTCTTTATTTCATA 58.123 30.769 0.00 0.00 0.00 2.15
547 548 8.519526 TCGGCAAACAAAGTCTTTATTTCATAT 58.480 29.630 0.00 0.00 0.00 1.78
548 549 9.139174 CGGCAAACAAAGTCTTTATTTCATATT 57.861 29.630 0.00 0.00 0.00 1.28
572 573 8.439993 TTGGTAATTTAGTCGCATAAATAGCA 57.560 30.769 5.47 7.02 34.93 3.49
573 574 8.439993 TGGTAATTTAGTCGCATAAATAGCAA 57.560 30.769 5.47 0.00 34.93 3.91
574 575 8.339714 TGGTAATTTAGTCGCATAAATAGCAAC 58.660 33.333 5.47 0.00 34.93 4.17
575 576 8.557029 GGTAATTTAGTCGCATAAATAGCAACT 58.443 33.333 5.47 0.00 34.93 3.16
576 577 9.931210 GTAATTTAGTCGCATAAATAGCAACTT 57.069 29.630 5.47 0.00 34.93 2.66
577 578 8.841444 AATTTAGTCGCATAAATAGCAACTTG 57.159 30.769 5.47 0.00 34.93 3.16
578 579 7.603963 TTTAGTCGCATAAATAGCAACTTGA 57.396 32.000 0.00 0.00 0.00 3.02
579 580 7.786178 TTAGTCGCATAAATAGCAACTTGAT 57.214 32.000 0.00 0.00 0.00 2.57
580 581 8.880878 TTAGTCGCATAAATAGCAACTTGATA 57.119 30.769 0.00 0.00 0.00 2.15
581 582 7.969536 AGTCGCATAAATAGCAACTTGATAT 57.030 32.000 0.00 0.00 28.96 1.63
583 584 9.144747 AGTCGCATAAATAGCAACTTGATATAG 57.855 33.333 0.00 0.00 27.62 1.31
584 585 8.926710 GTCGCATAAATAGCAACTTGATATAGT 58.073 33.333 0.00 0.00 27.62 2.12
595 596 9.635404 AGCAACTTGATATAGTAGTACTTCTCT 57.365 33.333 8.40 0.00 0.00 3.10
605 606 6.966435 AGTAGTACTTCTCTAACGAGTGTC 57.034 41.667 0.00 0.00 38.45 3.67
606 607 6.700352 AGTAGTACTTCTCTAACGAGTGTCT 58.300 40.000 0.00 0.00 38.45 3.41
607 608 7.160726 AGTAGTACTTCTCTAACGAGTGTCTT 58.839 38.462 0.00 0.00 38.45 3.01
608 609 6.243811 AGTACTTCTCTAACGAGTGTCTTG 57.756 41.667 0.00 0.00 38.45 3.02
609 610 5.996513 AGTACTTCTCTAACGAGTGTCTTGA 59.003 40.000 0.00 0.00 38.45 3.02
610 611 5.968528 ACTTCTCTAACGAGTGTCTTGAT 57.031 39.130 0.00 0.00 38.45 2.57
611 612 6.334102 ACTTCTCTAACGAGTGTCTTGATT 57.666 37.500 0.00 0.00 38.45 2.57
612 613 6.153067 ACTTCTCTAACGAGTGTCTTGATTG 58.847 40.000 0.00 0.00 38.45 2.67
613 614 5.060662 TCTCTAACGAGTGTCTTGATTGG 57.939 43.478 0.00 0.00 38.45 3.16
614 615 4.765339 TCTCTAACGAGTGTCTTGATTGGA 59.235 41.667 0.00 0.00 38.45 3.53
615 616 5.243060 TCTCTAACGAGTGTCTTGATTGGAA 59.757 40.000 0.00 0.00 38.45 3.53
616 617 5.849510 TCTAACGAGTGTCTTGATTGGAAA 58.150 37.500 0.00 0.00 0.00 3.13
617 618 6.285224 TCTAACGAGTGTCTTGATTGGAAAA 58.715 36.000 0.00 0.00 0.00 2.29
618 619 5.828299 AACGAGTGTCTTGATTGGAAAAA 57.172 34.783 0.00 0.00 0.00 1.94
638 639 6.418057 AAAAATATGTTTGGTGCTTCAGGA 57.582 33.333 0.00 0.00 0.00 3.86
639 640 6.418057 AAAATATGTTTGGTGCTTCAGGAA 57.582 33.333 0.00 0.00 0.00 3.36
640 641 5.649782 AATATGTTTGGTGCTTCAGGAAG 57.350 39.130 4.67 4.67 41.24 3.46
641 642 2.727123 TGTTTGGTGCTTCAGGAAGA 57.273 45.000 13.01 0.00 40.79 2.87
642 643 2.575532 TGTTTGGTGCTTCAGGAAGAG 58.424 47.619 13.01 0.00 40.79 2.85
643 644 2.172505 TGTTTGGTGCTTCAGGAAGAGA 59.827 45.455 13.01 0.00 40.79 3.10
644 645 3.214328 GTTTGGTGCTTCAGGAAGAGAA 58.786 45.455 13.01 0.00 40.79 2.87
645 646 2.847327 TGGTGCTTCAGGAAGAGAAG 57.153 50.000 13.01 0.00 44.08 2.85
646 647 2.050144 TGGTGCTTCAGGAAGAGAAGT 58.950 47.619 13.01 0.00 43.36 3.01
647 648 3.239449 TGGTGCTTCAGGAAGAGAAGTA 58.761 45.455 13.01 0.00 43.36 2.24
648 649 3.259374 TGGTGCTTCAGGAAGAGAAGTAG 59.741 47.826 13.01 0.00 43.36 2.57
649 650 3.259625 GGTGCTTCAGGAAGAGAAGTAGT 59.740 47.826 13.01 0.00 43.36 2.73
650 651 4.262678 GGTGCTTCAGGAAGAGAAGTAGTT 60.263 45.833 13.01 0.00 43.36 2.24
651 652 5.301555 GTGCTTCAGGAAGAGAAGTAGTTT 58.698 41.667 13.01 0.00 43.36 2.66
652 653 5.760743 GTGCTTCAGGAAGAGAAGTAGTTTT 59.239 40.000 13.01 0.00 43.36 2.43
653 654 5.760253 TGCTTCAGGAAGAGAAGTAGTTTTG 59.240 40.000 13.01 0.00 43.36 2.44
654 655 5.760743 GCTTCAGGAAGAGAAGTAGTTTTGT 59.239 40.000 13.01 0.00 43.36 2.83
655 656 6.261158 GCTTCAGGAAGAGAAGTAGTTTTGTT 59.739 38.462 13.01 0.00 43.36 2.83
656 657 7.201741 GCTTCAGGAAGAGAAGTAGTTTTGTTT 60.202 37.037 13.01 0.00 43.36 2.83
657 658 8.575649 TTCAGGAAGAGAAGTAGTTTTGTTTT 57.424 30.769 0.00 0.00 0.00 2.43
658 659 7.985476 TCAGGAAGAGAAGTAGTTTTGTTTTG 58.015 34.615 0.00 0.00 0.00 2.44
659 660 6.693113 CAGGAAGAGAAGTAGTTTTGTTTTGC 59.307 38.462 0.00 0.00 0.00 3.68
660 661 5.977725 GGAAGAGAAGTAGTTTTGTTTTGCC 59.022 40.000 0.00 0.00 0.00 4.52
661 662 6.405397 GGAAGAGAAGTAGTTTTGTTTTGCCA 60.405 38.462 0.00 0.00 0.00 4.92
662 663 6.524101 AGAGAAGTAGTTTTGTTTTGCCAA 57.476 33.333 0.00 0.00 0.00 4.52
663 664 6.330278 AGAGAAGTAGTTTTGTTTTGCCAAC 58.670 36.000 0.00 0.00 0.00 3.77
664 665 6.152831 AGAGAAGTAGTTTTGTTTTGCCAACT 59.847 34.615 0.00 0.00 33.95 3.16
665 666 7.338449 AGAGAAGTAGTTTTGTTTTGCCAACTA 59.662 33.333 0.00 0.00 31.83 2.24
666 667 8.007405 AGAAGTAGTTTTGTTTTGCCAACTAT 57.993 30.769 0.00 0.00 34.92 2.12
667 668 8.474831 AGAAGTAGTTTTGTTTTGCCAACTATT 58.525 29.630 0.00 0.00 34.92 1.73
668 669 9.093970 GAAGTAGTTTTGTTTTGCCAACTATTT 57.906 29.630 0.00 0.00 35.52 1.40
669 670 9.443323 AAGTAGTTTTGTTTTGCCAACTATTTT 57.557 25.926 0.00 0.00 34.92 1.82
744 745 2.202932 GAGCGCGTGTGGATCCAT 60.203 61.111 19.62 0.00 0.00 3.41
745 746 2.512286 AGCGCGTGTGGATCCATG 60.512 61.111 19.62 12.25 0.00 3.66
747 748 2.512286 CGCGTGTGGATCCATGCT 60.512 61.111 19.62 0.00 43.62 3.79
748 749 2.108514 CGCGTGTGGATCCATGCTT 61.109 57.895 19.62 0.00 43.62 3.91
750 751 1.308069 GCGTGTGGATCCATGCTTGT 61.308 55.000 19.62 0.00 42.73 3.16
751 752 0.448990 CGTGTGGATCCATGCTTGTG 59.551 55.000 19.62 0.25 0.00 3.33
752 753 1.538047 GTGTGGATCCATGCTTGTGT 58.462 50.000 19.62 0.00 0.00 3.72
794 795 2.037367 CTCTCCGACCCCACCTCA 59.963 66.667 0.00 0.00 0.00 3.86
810 811 5.070001 CCACCTCACATCTTTTCCTAAACA 58.930 41.667 0.00 0.00 0.00 2.83
847 848 4.620723 ACAGAGACCATTCCTACCATACA 58.379 43.478 0.00 0.00 0.00 2.29
1080 2368 3.456380 AGGTATGCTCAAACCCATTGT 57.544 42.857 0.00 0.00 40.11 2.71
1119 2407 3.511699 TGTTCCTCAACGATTCATCTCG 58.488 45.455 0.00 0.00 44.14 4.04
1354 2642 0.032815 TGTGAGAACGACGATGCCAA 59.967 50.000 0.00 0.00 0.00 4.52
1355 2643 0.716108 GTGAGAACGACGATGCCAAG 59.284 55.000 0.00 0.00 0.00 3.61
1356 2644 1.014044 TGAGAACGACGATGCCAAGC 61.014 55.000 0.00 0.00 0.00 4.01
1357 2645 0.737715 GAGAACGACGATGCCAAGCT 60.738 55.000 0.00 0.00 0.00 3.74
1358 2646 0.737715 AGAACGACGATGCCAAGCTC 60.738 55.000 0.00 0.00 0.00 4.09
1359 2647 1.696832 GAACGACGATGCCAAGCTCC 61.697 60.000 0.00 0.00 0.00 4.70
1360 2648 3.257561 CGACGATGCCAAGCTCCG 61.258 66.667 0.00 0.00 0.00 4.63
1361 2649 3.567797 GACGATGCCAAGCTCCGC 61.568 66.667 0.00 0.00 0.00 5.54
1362 2650 4.087892 ACGATGCCAAGCTCCGCT 62.088 61.111 6.54 0.00 42.56 5.52
1363 2651 3.267860 CGATGCCAAGCTCCGCTC 61.268 66.667 6.54 1.88 38.25 5.03
1364 2652 3.267860 GATGCCAAGCTCCGCTCG 61.268 66.667 6.54 0.00 38.25 5.03
1369 2657 3.793144 CAAGCTCCGCTCGCCAAC 61.793 66.667 0.00 0.00 38.25 3.77
1378 2666 4.749310 CTCGCCAACGCCAGAGCT 62.749 66.667 0.00 0.00 39.84 4.09
1379 2667 4.742201 TCGCCAACGCCAGAGCTC 62.742 66.667 5.27 5.27 39.84 4.09
1383 2671 4.749310 CAACGCCAGAGCTCCGCT 62.749 66.667 18.35 1.91 43.88 5.52
1464 2752 1.741770 GAATGCTTGGAGTCGCCGT 60.742 57.895 0.00 0.00 40.66 5.68
1473 2761 1.579932 GAGTCGCCGTTGTCAGAGA 59.420 57.895 0.00 0.00 0.00 3.10
1518 2807 3.017442 CAGTCAGACCAATCTCGTCCTA 58.983 50.000 0.00 0.00 30.42 2.94
2032 3401 4.639755 TGAAAATGCAGATAAGATTCGCCA 59.360 37.500 0.00 0.00 0.00 5.69
2033 3402 4.558538 AAATGCAGATAAGATTCGCCAC 57.441 40.909 0.00 0.00 0.00 5.01
2034 3403 2.689553 TGCAGATAAGATTCGCCACA 57.310 45.000 0.00 0.00 0.00 4.17
2035 3404 3.198409 TGCAGATAAGATTCGCCACAT 57.802 42.857 0.00 0.00 0.00 3.21
2036 3405 4.335400 TGCAGATAAGATTCGCCACATA 57.665 40.909 0.00 0.00 0.00 2.29
2037 3406 4.702831 TGCAGATAAGATTCGCCACATAA 58.297 39.130 0.00 0.00 0.00 1.90
2038 3407 4.511454 TGCAGATAAGATTCGCCACATAAC 59.489 41.667 0.00 0.00 0.00 1.89
2044 3413 3.786635 AGATTCGCCACATAACTCAGTC 58.213 45.455 0.00 0.00 0.00 3.51
2227 3597 2.546494 GCTTCACAACCACTGCGCT 61.546 57.895 9.73 0.00 0.00 5.92
2351 3723 2.413142 GGTACCCGACGAGGTGAGG 61.413 68.421 15.62 1.67 41.42 3.86
2665 4037 2.732016 CCGACCGGACACACAAGA 59.268 61.111 9.46 0.00 37.50 3.02
2851 4224 1.075525 CCCGGTAGGACCCAGATGA 60.076 63.158 0.00 0.00 41.02 2.92
3832 5207 4.798682 GAGGGAGGAAGGGGGCGA 62.799 72.222 0.00 0.00 0.00 5.54
3924 5299 2.042800 CTAGTCGCCTAGGCCTTCC 58.957 63.158 28.09 12.78 37.59 3.46
3925 5300 0.755698 CTAGTCGCCTAGGCCTTCCA 60.756 60.000 28.09 8.72 37.59 3.53
3926 5301 1.041447 TAGTCGCCTAGGCCTTCCAC 61.041 60.000 28.09 15.72 37.98 4.02
3927 5302 3.081409 TCGCCTAGGCCTTCCACC 61.081 66.667 28.09 0.00 37.98 4.61
3928 5303 4.176752 CGCCTAGGCCTTCCACCC 62.177 72.222 28.09 0.00 37.98 4.61
3929 5304 4.176752 GCCTAGGCCTTCCACCCG 62.177 72.222 24.19 0.00 34.56 5.28
3930 5305 4.176752 CCTAGGCCTTCCACCCGC 62.177 72.222 12.58 0.00 33.74 6.13
3931 5306 3.083997 CTAGGCCTTCCACCCGCT 61.084 66.667 12.58 0.00 33.74 5.52
3932 5307 1.760875 CTAGGCCTTCCACCCGCTA 60.761 63.158 12.58 0.00 33.74 4.26
3933 5308 1.749334 CTAGGCCTTCCACCCGCTAG 61.749 65.000 12.58 0.00 33.74 3.42
3934 5309 4.858680 GGCCTTCCACCCGCTAGC 62.859 72.222 4.06 4.06 0.00 3.42
3935 5310 3.787001 GCCTTCCACCCGCTAGCT 61.787 66.667 13.93 0.00 0.00 3.32
3936 5311 2.432300 GCCTTCCACCCGCTAGCTA 61.432 63.158 13.93 0.00 0.00 3.32
3937 5312 1.742768 CCTTCCACCCGCTAGCTAG 59.257 63.158 16.84 16.84 0.00 3.42
3938 5313 1.043673 CCTTCCACCCGCTAGCTAGT 61.044 60.000 21.62 6.93 0.00 2.57
3939 5314 0.386113 CTTCCACCCGCTAGCTAGTC 59.614 60.000 21.62 12.85 0.00 2.59
3940 5315 1.041447 TTCCACCCGCTAGCTAGTCC 61.041 60.000 21.62 5.51 0.00 3.85
3941 5316 2.499827 CCACCCGCTAGCTAGTCCC 61.500 68.421 21.62 4.79 0.00 4.46
3942 5317 2.123382 ACCCGCTAGCTAGTCCCC 60.123 66.667 21.62 4.43 0.00 4.81
3943 5318 2.918276 CCCGCTAGCTAGTCCCCC 60.918 72.222 21.62 4.06 0.00 5.40
3944 5319 3.296054 CCGCTAGCTAGTCCCCCG 61.296 72.222 21.62 15.21 0.00 5.73
3945 5320 3.979739 CGCTAGCTAGTCCCCCGC 61.980 72.222 21.62 5.75 0.00 6.13
3946 5321 2.522193 GCTAGCTAGTCCCCCGCT 60.522 66.667 21.62 0.00 37.77 5.52
3947 5322 1.228490 GCTAGCTAGTCCCCCGCTA 60.228 63.158 21.62 0.00 35.33 4.26
3948 5323 2.949826 CTAGCTAGTCCCCCGCTAG 58.050 63.158 12.92 0.00 44.80 3.42
3949 5324 2.548375 TAGCTAGTCCCCCGCTAGA 58.452 57.895 0.00 0.00 38.47 2.43
3950 5325 1.073931 TAGCTAGTCCCCCGCTAGAT 58.926 55.000 0.00 0.04 38.47 1.98
3951 5326 0.188834 AGCTAGTCCCCCGCTAGATT 59.811 55.000 0.00 0.00 38.47 2.40
3952 5327 1.049402 GCTAGTCCCCCGCTAGATTT 58.951 55.000 0.00 0.00 38.47 2.17
3953 5328 1.416772 GCTAGTCCCCCGCTAGATTTT 59.583 52.381 0.00 0.00 38.47 1.82
3954 5329 2.548280 GCTAGTCCCCCGCTAGATTTTC 60.548 54.545 0.00 0.00 38.47 2.29
3955 5330 1.880941 AGTCCCCCGCTAGATTTTCT 58.119 50.000 0.00 0.00 0.00 2.52
3956 5331 1.763545 AGTCCCCCGCTAGATTTTCTC 59.236 52.381 0.00 0.00 0.00 2.87
3957 5332 1.763545 GTCCCCCGCTAGATTTTCTCT 59.236 52.381 0.00 0.00 38.06 3.10
3958 5333 2.170817 GTCCCCCGCTAGATTTTCTCTT 59.829 50.000 0.00 0.00 35.28 2.85
3959 5334 2.844348 TCCCCCGCTAGATTTTCTCTTT 59.156 45.455 0.00 0.00 35.28 2.52
3960 5335 3.265995 TCCCCCGCTAGATTTTCTCTTTT 59.734 43.478 0.00 0.00 35.28 2.27
3961 5336 4.017126 CCCCCGCTAGATTTTCTCTTTTT 58.983 43.478 0.00 0.00 35.28 1.94
3962 5337 4.096532 CCCCCGCTAGATTTTCTCTTTTTC 59.903 45.833 0.00 0.00 35.28 2.29
4276 5654 3.350612 GTTTGCGGCTGTGCGGTA 61.351 61.111 0.00 0.00 37.81 4.02
4394 5772 7.383843 GTCCAAAGAAAGAAAACACAAAGTCAA 59.616 33.333 0.00 0.00 0.00 3.18
4889 6452 5.463286 TCGACACAACATATCGTACAAACT 58.537 37.500 0.00 0.00 37.16 2.66
5144 6730 8.061304 ACCATAAAATTCCTATCAGACCAATGT 58.939 33.333 0.00 0.00 0.00 2.71
5393 6979 5.324784 TGTTGACACAGATATACGAGCTT 57.675 39.130 0.00 0.00 0.00 3.74
5452 7038 2.176273 GCGCGAGGATGACAAGCAT 61.176 57.895 12.10 0.00 40.77 3.79
5835 7442 2.600731 GTCGAGAACACTCTGGTCATG 58.399 52.381 0.00 0.00 36.30 3.07
5885 7492 0.817634 GCAGAGCGGAGAGAGAGCTA 60.818 60.000 0.00 0.00 41.84 3.32
5888 7495 0.944386 GAGCGGAGAGAGAGCTAGTG 59.056 60.000 0.00 0.00 41.84 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.280457 GGCGCCATACAGCTCTCC 60.280 66.667 24.80 0.00 0.00 3.71
53 54 2.001357 CTGCATGTCGATGACGGTG 58.999 57.895 0.00 0.00 40.21 4.94
236 237 4.759693 ACGGTCTTTGCATGAATGTTCTTA 59.240 37.500 0.00 0.00 0.00 2.10
246 247 1.131126 GGTCATCACGGTCTTTGCATG 59.869 52.381 0.00 0.00 0.00 4.06
261 262 1.826024 CCAAGGCTAGCGAGGTCAT 59.174 57.895 9.00 0.00 0.00 3.06
292 293 2.602878 CATCATTCAACCTGTTGCAGC 58.397 47.619 5.14 0.00 40.24 5.25
297 298 2.629137 TGCAAGCATCATTCAACCTGTT 59.371 40.909 0.00 0.00 0.00 3.16
311 312 2.610976 GGCAATGAACTGAATGCAAGCA 60.611 45.455 0.00 0.00 40.51 3.91
318 319 3.094572 CCAAGGAGGCAATGAACTGAAT 58.905 45.455 0.00 0.00 0.00 2.57
331 332 0.322456 TTCCGTTGCATCCAAGGAGG 60.322 55.000 0.00 0.00 38.72 4.30
335 336 0.523072 CCAGTTCCGTTGCATCCAAG 59.477 55.000 0.00 0.00 0.00 3.61
348 349 3.982475 TCGCTATCACATCATCCAGTTC 58.018 45.455 0.00 0.00 0.00 3.01
349 350 3.801638 GCTCGCTATCACATCATCCAGTT 60.802 47.826 0.00 0.00 0.00 3.16
361 362 2.288457 GCATACTCTTGGCTCGCTATCA 60.288 50.000 0.00 0.00 0.00 2.15
368 369 1.138661 AGCTCAGCATACTCTTGGCTC 59.861 52.381 0.00 0.00 35.27 4.70
371 372 2.975732 TGAGCTCAGCATACTCTTGG 57.024 50.000 13.74 0.00 0.00 3.61
408 409 5.445540 CCGAGCCTATTCGTTCAACTAAAAC 60.446 44.000 0.00 0.00 38.88 2.43
421 422 3.378427 ACTTTGATTTGCCGAGCCTATTC 59.622 43.478 0.00 0.00 0.00 1.75
422 423 3.356290 ACTTTGATTTGCCGAGCCTATT 58.644 40.909 0.00 0.00 0.00 1.73
423 424 2.945668 GACTTTGATTTGCCGAGCCTAT 59.054 45.455 0.00 0.00 0.00 2.57
424 425 2.356135 GACTTTGATTTGCCGAGCCTA 58.644 47.619 0.00 0.00 0.00 3.93
425 426 1.168714 GACTTTGATTTGCCGAGCCT 58.831 50.000 0.00 0.00 0.00 4.58
426 427 0.179189 CGACTTTGATTTGCCGAGCC 60.179 55.000 0.00 0.00 0.00 4.70
427 428 0.517316 ACGACTTTGATTTGCCGAGC 59.483 50.000 0.00 0.00 0.00 5.03
428 429 1.798223 TGACGACTTTGATTTGCCGAG 59.202 47.619 0.00 0.00 0.00 4.63
429 430 1.798223 CTGACGACTTTGATTTGCCGA 59.202 47.619 0.00 0.00 0.00 5.54
430 431 1.531149 ACTGACGACTTTGATTTGCCG 59.469 47.619 0.00 0.00 0.00 5.69
431 432 3.003275 TGAACTGACGACTTTGATTTGCC 59.997 43.478 0.00 0.00 0.00 4.52
432 433 4.209452 TGAACTGACGACTTTGATTTGC 57.791 40.909 0.00 0.00 0.00 3.68
433 434 7.482743 CCAATATGAACTGACGACTTTGATTTG 59.517 37.037 0.00 0.00 0.00 2.32
434 435 7.174946 ACCAATATGAACTGACGACTTTGATTT 59.825 33.333 0.00 0.00 0.00 2.17
435 436 6.655003 ACCAATATGAACTGACGACTTTGATT 59.345 34.615 0.00 0.00 0.00 2.57
436 437 6.173339 ACCAATATGAACTGACGACTTTGAT 58.827 36.000 0.00 0.00 0.00 2.57
437 438 5.547465 ACCAATATGAACTGACGACTTTGA 58.453 37.500 0.00 0.00 0.00 2.69
438 439 5.862924 ACCAATATGAACTGACGACTTTG 57.137 39.130 0.00 0.00 0.00 2.77
439 440 6.698380 ACTACCAATATGAACTGACGACTTT 58.302 36.000 0.00 0.00 0.00 2.66
440 441 6.282199 ACTACCAATATGAACTGACGACTT 57.718 37.500 0.00 0.00 0.00 3.01
441 442 5.916661 ACTACCAATATGAACTGACGACT 57.083 39.130 0.00 0.00 0.00 4.18
442 443 6.963049 AAACTACCAATATGAACTGACGAC 57.037 37.500 0.00 0.00 0.00 4.34
443 444 7.758076 CACTAAACTACCAATATGAACTGACGA 59.242 37.037 0.00 0.00 0.00 4.20
444 445 7.464178 GCACTAAACTACCAATATGAACTGACG 60.464 40.741 0.00 0.00 0.00 4.35
445 446 7.333423 TGCACTAAACTACCAATATGAACTGAC 59.667 37.037 0.00 0.00 0.00 3.51
446 447 7.390823 TGCACTAAACTACCAATATGAACTGA 58.609 34.615 0.00 0.00 0.00 3.41
447 448 7.609760 TGCACTAAACTACCAATATGAACTG 57.390 36.000 0.00 0.00 0.00 3.16
448 449 8.512138 GTTTGCACTAAACTACCAATATGAACT 58.488 33.333 0.00 0.00 44.18 3.01
449 450 8.293867 TGTTTGCACTAAACTACCAATATGAAC 58.706 33.333 1.74 0.00 46.96 3.18
450 451 8.397575 TGTTTGCACTAAACTACCAATATGAA 57.602 30.769 1.74 0.00 46.96 2.57
451 452 7.663905 ACTGTTTGCACTAAACTACCAATATGA 59.336 33.333 1.74 0.00 46.96 2.15
452 453 7.816640 ACTGTTTGCACTAAACTACCAATATG 58.183 34.615 1.74 0.00 46.96 1.78
453 454 7.996098 ACTGTTTGCACTAAACTACCAATAT 57.004 32.000 1.74 0.00 46.96 1.28
454 455 8.905660 TTACTGTTTGCACTAAACTACCAATA 57.094 30.769 1.74 0.00 46.96 1.90
455 456 7.717875 TCTTACTGTTTGCACTAAACTACCAAT 59.282 33.333 1.74 0.00 46.96 3.16
456 457 7.049133 TCTTACTGTTTGCACTAAACTACCAA 58.951 34.615 1.74 0.00 46.96 3.67
457 458 6.584488 TCTTACTGTTTGCACTAAACTACCA 58.416 36.000 1.74 0.00 46.96 3.25
458 459 7.668525 ATCTTACTGTTTGCACTAAACTACC 57.331 36.000 1.74 0.00 46.96 3.18
464 465 9.764363 CCTGATATATCTTACTGTTTGCACTAA 57.236 33.333 13.79 0.00 0.00 2.24
465 466 9.143155 TCCTGATATATCTTACTGTTTGCACTA 57.857 33.333 13.79 0.00 0.00 2.74
466 467 8.023021 TCCTGATATATCTTACTGTTTGCACT 57.977 34.615 13.79 0.00 0.00 4.40
467 468 8.715998 CATCCTGATATATCTTACTGTTTGCAC 58.284 37.037 13.79 0.00 0.00 4.57
468 469 8.432013 ACATCCTGATATATCTTACTGTTTGCA 58.568 33.333 13.79 0.00 0.00 4.08
469 470 8.839310 ACATCCTGATATATCTTACTGTTTGC 57.161 34.615 13.79 0.00 0.00 3.68
493 494 9.283420 CGAGCCTACTAAGTAAAACTAACTTAC 57.717 37.037 0.00 0.00 38.18 2.34
494 495 9.231297 TCGAGCCTACTAAGTAAAACTAACTTA 57.769 33.333 0.00 0.00 38.18 2.24
495 496 8.115490 TCGAGCCTACTAAGTAAAACTAACTT 57.885 34.615 0.00 0.00 40.25 2.66
496 497 7.693969 TCGAGCCTACTAAGTAAAACTAACT 57.306 36.000 0.00 0.00 0.00 2.24
497 498 7.375544 CGATCGAGCCTACTAAGTAAAACTAAC 59.624 40.741 10.26 0.00 0.00 2.34
498 499 7.412853 CGATCGAGCCTACTAAGTAAAACTAA 58.587 38.462 10.26 0.00 0.00 2.24
499 500 6.017605 CCGATCGAGCCTACTAAGTAAAACTA 60.018 42.308 18.66 0.00 0.00 2.24
500 501 5.221009 CCGATCGAGCCTACTAAGTAAAACT 60.221 44.000 18.66 0.00 0.00 2.66
501 502 4.974888 CCGATCGAGCCTACTAAGTAAAAC 59.025 45.833 18.66 0.00 0.00 2.43
502 503 4.498682 GCCGATCGAGCCTACTAAGTAAAA 60.499 45.833 18.66 0.00 0.00 1.52
503 504 3.004106 GCCGATCGAGCCTACTAAGTAAA 59.996 47.826 18.66 0.00 0.00 2.01
504 505 2.551459 GCCGATCGAGCCTACTAAGTAA 59.449 50.000 18.66 0.00 0.00 2.24
505 506 2.149578 GCCGATCGAGCCTACTAAGTA 58.850 52.381 18.66 0.00 0.00 2.24
506 507 0.953003 GCCGATCGAGCCTACTAAGT 59.047 55.000 18.66 0.00 0.00 2.24
507 508 0.952280 TGCCGATCGAGCCTACTAAG 59.048 55.000 18.66 0.00 0.00 2.18
508 509 1.395635 TTGCCGATCGAGCCTACTAA 58.604 50.000 18.66 5.54 0.00 2.24
509 510 1.066605 GTTTGCCGATCGAGCCTACTA 59.933 52.381 18.66 0.00 0.00 1.82
510 511 0.179108 GTTTGCCGATCGAGCCTACT 60.179 55.000 18.66 0.00 0.00 2.57
511 512 0.459585 TGTTTGCCGATCGAGCCTAC 60.460 55.000 18.66 16.92 0.00 3.18
512 513 0.248012 TTGTTTGCCGATCGAGCCTA 59.752 50.000 18.66 6.55 0.00 3.93
513 514 0.605319 TTTGTTTGCCGATCGAGCCT 60.605 50.000 18.66 0.00 0.00 4.58
514 515 0.179189 CTTTGTTTGCCGATCGAGCC 60.179 55.000 18.66 5.04 0.00 4.70
515 516 0.517316 ACTTTGTTTGCCGATCGAGC 59.483 50.000 18.66 18.31 0.00 5.03
516 517 2.069273 AGACTTTGTTTGCCGATCGAG 58.931 47.619 18.66 8.00 0.00 4.04
517 518 2.163818 AGACTTTGTTTGCCGATCGA 57.836 45.000 18.66 0.00 0.00 3.59
518 519 2.969443 AAGACTTTGTTTGCCGATCG 57.031 45.000 8.51 8.51 0.00 3.69
519 520 6.861055 TGAAATAAAGACTTTGTTTGCCGATC 59.139 34.615 22.62 10.95 34.69 3.69
520 521 6.744112 TGAAATAAAGACTTTGTTTGCCGAT 58.256 32.000 22.62 2.75 34.69 4.18
521 522 6.137794 TGAAATAAAGACTTTGTTTGCCGA 57.862 33.333 22.62 5.82 34.69 5.54
522 523 8.687824 ATATGAAATAAAGACTTTGTTTGCCG 57.312 30.769 22.62 0.00 34.69 5.69
546 547 9.062524 TGCTATTTATGCGACTAAATTACCAAT 57.937 29.630 7.63 0.00 34.15 3.16
547 548 8.439993 TGCTATTTATGCGACTAAATTACCAA 57.560 30.769 7.63 0.00 34.15 3.67
548 549 8.339714 GTTGCTATTTATGCGACTAAATTACCA 58.660 33.333 7.63 2.58 40.59 3.25
549 550 8.709496 GTTGCTATTTATGCGACTAAATTACC 57.291 34.615 7.63 0.72 40.59 2.85
558 559 8.926710 ACTATATCAAGTTGCTATTTATGCGAC 58.073 33.333 4.65 0.00 43.22 5.19
569 570 9.635404 AGAGAAGTACTACTATATCAAGTTGCT 57.365 33.333 0.00 0.00 0.00 3.91
593 594 5.462530 TTCCAATCAAGACACTCGTTAGA 57.537 39.130 0.00 0.00 0.00 2.10
594 595 6.539649 TTTTCCAATCAAGACACTCGTTAG 57.460 37.500 0.00 0.00 0.00 2.34
595 596 6.928979 TTTTTCCAATCAAGACACTCGTTA 57.071 33.333 0.00 0.00 0.00 3.18
596 597 5.828299 TTTTTCCAATCAAGACACTCGTT 57.172 34.783 0.00 0.00 0.00 3.85
615 616 6.418057 TCCTGAAGCACCAAACATATTTTT 57.582 33.333 0.00 0.00 0.00 1.94
616 617 6.267471 TCTTCCTGAAGCACCAAACATATTTT 59.733 34.615 1.94 0.00 38.28 1.82
617 618 5.774690 TCTTCCTGAAGCACCAAACATATTT 59.225 36.000 1.94 0.00 38.28 1.40
618 619 5.324409 TCTTCCTGAAGCACCAAACATATT 58.676 37.500 1.94 0.00 38.28 1.28
619 620 4.922206 TCTTCCTGAAGCACCAAACATAT 58.078 39.130 1.94 0.00 38.28 1.78
620 621 4.041567 TCTCTTCCTGAAGCACCAAACATA 59.958 41.667 1.94 0.00 38.28 2.29
621 622 3.152341 CTCTTCCTGAAGCACCAAACAT 58.848 45.455 1.94 0.00 38.28 2.71
622 623 2.172505 TCTCTTCCTGAAGCACCAAACA 59.827 45.455 1.94 0.00 38.28 2.83
623 624 2.851195 TCTCTTCCTGAAGCACCAAAC 58.149 47.619 1.94 0.00 38.28 2.93
624 625 3.117888 ACTTCTCTTCCTGAAGCACCAAA 60.118 43.478 1.94 0.00 43.23 3.28
625 626 2.439507 ACTTCTCTTCCTGAAGCACCAA 59.560 45.455 1.94 0.00 43.23 3.67
626 627 2.050144 ACTTCTCTTCCTGAAGCACCA 58.950 47.619 1.94 0.00 43.23 4.17
627 628 2.849294 ACTTCTCTTCCTGAAGCACC 57.151 50.000 1.94 0.00 43.23 5.01
628 629 4.529109 ACTACTTCTCTTCCTGAAGCAC 57.471 45.455 1.94 0.00 43.23 4.40
629 630 5.552870 AAACTACTTCTCTTCCTGAAGCA 57.447 39.130 1.94 0.00 43.23 3.91
630 631 5.760743 ACAAAACTACTTCTCTTCCTGAAGC 59.239 40.000 1.94 0.00 43.23 3.86
631 632 7.793927 AACAAAACTACTTCTCTTCCTGAAG 57.206 36.000 0.31 0.31 44.52 3.02
632 633 8.458843 CAAAACAAAACTACTTCTCTTCCTGAA 58.541 33.333 0.00 0.00 0.00 3.02
633 634 7.415206 GCAAAACAAAACTACTTCTCTTCCTGA 60.415 37.037 0.00 0.00 0.00 3.86
634 635 6.693113 GCAAAACAAAACTACTTCTCTTCCTG 59.307 38.462 0.00 0.00 0.00 3.86
635 636 6.183360 GGCAAAACAAAACTACTTCTCTTCCT 60.183 38.462 0.00 0.00 0.00 3.36
636 637 5.977725 GGCAAAACAAAACTACTTCTCTTCC 59.022 40.000 0.00 0.00 0.00 3.46
637 638 6.560711 TGGCAAAACAAAACTACTTCTCTTC 58.439 36.000 0.00 0.00 0.00 2.87
638 639 6.524101 TGGCAAAACAAAACTACTTCTCTT 57.476 33.333 0.00 0.00 0.00 2.85
639 640 6.152831 AGTTGGCAAAACAAAACTACTTCTCT 59.847 34.615 0.00 0.00 31.26 3.10
640 641 6.330278 AGTTGGCAAAACAAAACTACTTCTC 58.670 36.000 0.00 0.00 31.26 2.87
641 642 6.280855 AGTTGGCAAAACAAAACTACTTCT 57.719 33.333 0.00 0.00 31.26 2.85
642 643 8.642908 AATAGTTGGCAAAACAAAACTACTTC 57.357 30.769 0.00 0.00 37.80 3.01
643 644 9.443323 AAAATAGTTGGCAAAACAAAACTACTT 57.557 25.926 0.00 0.00 37.80 2.24
647 648 8.760569 CGATAAAATAGTTGGCAAAACAAAACT 58.239 29.630 0.00 0.00 36.80 2.66
648 649 8.756864 TCGATAAAATAGTTGGCAAAACAAAAC 58.243 29.630 0.00 0.00 31.17 2.43
649 650 8.873215 TCGATAAAATAGTTGGCAAAACAAAA 57.127 26.923 0.00 0.00 31.17 2.44
654 655 9.296400 GCTTTATCGATAAAATAGTTGGCAAAA 57.704 29.630 26.15 6.15 32.39 2.44
655 656 7.918562 GGCTTTATCGATAAAATAGTTGGCAAA 59.081 33.333 26.15 6.53 32.39 3.68
656 657 7.284489 AGGCTTTATCGATAAAATAGTTGGCAA 59.716 33.333 26.15 0.00 32.39 4.52
657 658 6.770785 AGGCTTTATCGATAAAATAGTTGGCA 59.229 34.615 26.15 5.58 32.39 4.92
658 659 7.203255 AGGCTTTATCGATAAAATAGTTGGC 57.797 36.000 26.15 23.54 32.39 4.52
666 667 8.392612 CGGAAGTAAAAGGCTTTATCGATAAAA 58.607 33.333 26.15 11.03 32.39 1.52
667 668 7.466320 GCGGAAGTAAAAGGCTTTATCGATAAA 60.466 37.037 25.03 25.03 29.86 1.40
668 669 6.018507 GCGGAAGTAAAAGGCTTTATCGATAA 60.019 38.462 13.77 13.85 29.86 1.75
669 670 5.464389 GCGGAAGTAAAAGGCTTTATCGATA 59.536 40.000 13.77 0.00 29.86 2.92
670 671 4.272748 GCGGAAGTAAAAGGCTTTATCGAT 59.727 41.667 13.77 2.16 29.86 3.59
744 745 4.182433 TGCGGGTCCACACAAGCA 62.182 61.111 0.00 0.00 35.08 3.91
745 746 3.357079 CTGCGGGTCCACACAAGC 61.357 66.667 0.00 0.00 0.00 4.01
747 748 4.947147 GGCTGCGGGTCCACACAA 62.947 66.667 0.00 0.00 0.00 3.33
794 795 6.207810 TGGCGTATTTGTTTAGGAAAAGATGT 59.792 34.615 0.00 0.00 0.00 3.06
810 811 4.443034 GGTCTCTGTATTCCTGGCGTATTT 60.443 45.833 0.00 0.00 0.00 1.40
847 848 1.135373 CCGCCGCTCGTATCTGAATAT 60.135 52.381 0.00 0.00 36.19 1.28
1080 2368 7.233144 TGAGGAACAAAGATTTGAATGGATTGA 59.767 33.333 12.07 0.00 40.55 2.57
1361 2649 4.749310 AGCTCTGGCGTTGGCGAG 62.749 66.667 0.00 7.48 45.34 5.03
1362 2650 4.742201 GAGCTCTGGCGTTGGCGA 62.742 66.667 6.43 0.00 44.37 5.54
1382 2670 4.749310 AGCTCTGGCGTTGGCGAG 62.749 66.667 0.00 7.48 45.34 5.03
1383 2671 4.742201 GAGCTCTGGCGTTGGCGA 62.742 66.667 6.43 0.00 44.37 5.54
1464 2752 3.130340 GGCTTGTTGGTTTTCTCTGACAA 59.870 43.478 0.00 0.00 0.00 3.18
1473 2761 2.355615 CCAGGTTTGGCTTGTTGGTTTT 60.356 45.455 0.00 0.00 37.73 2.43
1518 2807 4.338879 CTTCTCTTCCATGGACATTGGTT 58.661 43.478 15.91 0.00 0.00 3.67
2032 3401 6.202954 CCTTTTTCGTCAAGACTGAGTTATGT 59.797 38.462 0.00 0.00 30.14 2.29
2033 3402 6.347725 CCCTTTTTCGTCAAGACTGAGTTATG 60.348 42.308 0.00 0.00 30.14 1.90
2034 3403 5.701290 CCCTTTTTCGTCAAGACTGAGTTAT 59.299 40.000 0.00 0.00 30.14 1.89
2035 3404 5.054477 CCCTTTTTCGTCAAGACTGAGTTA 58.946 41.667 0.00 0.00 30.14 2.24
2036 3405 3.877508 CCCTTTTTCGTCAAGACTGAGTT 59.122 43.478 0.00 0.00 30.14 3.01
2037 3406 3.118371 ACCCTTTTTCGTCAAGACTGAGT 60.118 43.478 0.00 0.00 30.14 3.41
2038 3407 3.467803 ACCCTTTTTCGTCAAGACTGAG 58.532 45.455 0.00 0.00 30.14 3.35
2443 3815 0.902531 GAGGTGAAGGTTGGGATCGA 59.097 55.000 0.00 0.00 0.00 3.59
2665 4037 2.670148 CGGGCCTGGTAAGCTCCTT 61.670 63.158 2.57 0.00 0.00 3.36
2711 4083 2.131709 CGGGAGCTGTCCGGGAATA 61.132 63.158 15.21 0.00 45.05 1.75
2782 4155 0.543174 GTGTGGTGAGGAGGAGGAGT 60.543 60.000 0.00 0.00 0.00 3.85
2837 4210 1.411651 GGGCCTCATCTGGGTCCTAC 61.412 65.000 0.84 0.00 44.65 3.18
3793 5168 4.715130 CTCCCCCGTCCAGACCCA 62.715 72.222 0.00 0.00 0.00 4.51
3916 5291 3.083997 CTAGCGGGTGGAAGGCCT 61.084 66.667 0.00 0.00 34.31 5.19
3917 5292 4.858680 GCTAGCGGGTGGAAGGCC 62.859 72.222 0.00 0.00 0.00 5.19
3918 5293 2.370647 CTAGCTAGCGGGTGGAAGGC 62.371 65.000 8.05 0.00 0.00 4.35
3919 5294 1.043673 ACTAGCTAGCGGGTGGAAGG 61.044 60.000 20.91 0.00 0.00 3.46
3920 5295 0.386113 GACTAGCTAGCGGGTGGAAG 59.614 60.000 20.91 7.38 0.00 3.46
3921 5296 1.041447 GGACTAGCTAGCGGGTGGAA 61.041 60.000 20.91 0.00 0.00 3.53
3922 5297 1.455217 GGACTAGCTAGCGGGTGGA 60.455 63.158 20.91 0.00 0.00 4.02
3923 5298 2.499827 GGGACTAGCTAGCGGGTGG 61.500 68.421 20.91 2.65 0.00 4.61
3924 5299 2.499827 GGGGACTAGCTAGCGGGTG 61.500 68.421 20.91 8.59 0.00 4.61
3925 5300 2.123382 GGGGACTAGCTAGCGGGT 60.123 66.667 20.91 12.07 0.00 5.28
3926 5301 2.918276 GGGGGACTAGCTAGCGGG 60.918 72.222 20.91 8.71 0.00 6.13
3927 5302 3.296054 CGGGGGACTAGCTAGCGG 61.296 72.222 20.91 9.09 0.00 5.52
3928 5303 3.979739 GCGGGGGACTAGCTAGCG 61.980 72.222 20.91 15.77 0.00 4.26
3929 5304 1.228490 TAGCGGGGGACTAGCTAGC 60.228 63.158 20.91 6.62 42.42 3.42
3931 5306 1.073931 ATCTAGCGGGGGACTAGCTA 58.926 55.000 0.00 0.00 42.42 3.32
3932 5307 0.188834 AATCTAGCGGGGGACTAGCT 59.811 55.000 0.00 0.00 44.07 3.32
3933 5308 1.049402 AAATCTAGCGGGGGACTAGC 58.951 55.000 0.00 0.00 37.60 3.42
3934 5309 2.966516 AGAAAATCTAGCGGGGGACTAG 59.033 50.000 0.00 0.00 38.79 2.57
3935 5310 2.963782 GAGAAAATCTAGCGGGGGACTA 59.036 50.000 0.00 0.00 0.00 2.59
3936 5311 1.763545 GAGAAAATCTAGCGGGGGACT 59.236 52.381 0.00 0.00 0.00 3.85
3937 5312 1.763545 AGAGAAAATCTAGCGGGGGAC 59.236 52.381 0.00 0.00 36.10 4.46
3938 5313 2.176247 AGAGAAAATCTAGCGGGGGA 57.824 50.000 0.00 0.00 36.10 4.81
3939 5314 3.283259 AAAGAGAAAATCTAGCGGGGG 57.717 47.619 0.00 0.00 37.23 5.40
3940 5315 4.700213 TGAAAAAGAGAAAATCTAGCGGGG 59.300 41.667 0.00 0.00 37.23 5.73
3941 5316 5.181245 TGTGAAAAAGAGAAAATCTAGCGGG 59.819 40.000 0.00 0.00 37.23 6.13
3942 5317 6.241207 TGTGAAAAAGAGAAAATCTAGCGG 57.759 37.500 0.00 0.00 37.23 5.52
3943 5318 9.267096 GTTATGTGAAAAAGAGAAAATCTAGCG 57.733 33.333 0.00 0.00 37.23 4.26
3950 5325 9.396022 AGACTGAGTTATGTGAAAAAGAGAAAA 57.604 29.630 0.00 0.00 0.00 2.29
3951 5326 8.964476 AGACTGAGTTATGTGAAAAAGAGAAA 57.036 30.769 0.00 0.00 0.00 2.52
3952 5327 8.964476 AAGACTGAGTTATGTGAAAAAGAGAA 57.036 30.769 0.00 0.00 0.00 2.87
3953 5328 8.964476 AAAGACTGAGTTATGTGAAAAAGAGA 57.036 30.769 0.00 0.00 0.00 3.10
3954 5329 8.286097 GGAAAGACTGAGTTATGTGAAAAAGAG 58.714 37.037 0.00 0.00 0.00 2.85
3955 5330 7.228706 GGGAAAGACTGAGTTATGTGAAAAAGA 59.771 37.037 0.00 0.00 0.00 2.52
3956 5331 7.229506 AGGGAAAGACTGAGTTATGTGAAAAAG 59.770 37.037 0.00 0.00 0.00 2.27
3957 5332 7.013274 CAGGGAAAGACTGAGTTATGTGAAAAA 59.987 37.037 0.00 0.00 38.20 1.94
3958 5333 6.486657 CAGGGAAAGACTGAGTTATGTGAAAA 59.513 38.462 0.00 0.00 38.20 2.29
3959 5334 5.997746 CAGGGAAAGACTGAGTTATGTGAAA 59.002 40.000 0.00 0.00 38.20 2.69
3960 5335 5.306937 TCAGGGAAAGACTGAGTTATGTGAA 59.693 40.000 0.00 0.00 39.87 3.18
3961 5336 4.838423 TCAGGGAAAGACTGAGTTATGTGA 59.162 41.667 0.00 0.00 39.87 3.58
3962 5337 5.152623 TCAGGGAAAGACTGAGTTATGTG 57.847 43.478 0.00 0.00 39.87 3.21
3996 5371 3.116300 CGACGTATCCTGACAGAAATGG 58.884 50.000 3.32 0.00 0.00 3.16
4276 5654 7.790027 AGAATCACTTGATGCTGTCTATACTT 58.210 34.615 0.00 0.00 38.97 2.24
4394 5772 1.318158 GCTTGGCAGTTGCAGGCTAT 61.318 55.000 6.43 0.00 44.36 2.97
4648 6191 6.209589 ACATGTACTTGAGAGCTCTCTTGTTA 59.790 38.462 36.78 25.76 43.25 2.41
4889 6452 4.077108 AGTCCGAATGGCATATCGTACTA 58.923 43.478 19.99 8.09 36.63 1.82
5393 6979 0.881118 GCTTTGCCCATTTCTGTCGA 59.119 50.000 0.00 0.00 0.00 4.20
5452 7038 2.962569 CGCTCTCTGACCGTTGGA 59.037 61.111 0.00 0.00 0.00 3.53
5641 7248 6.434652 TGTTTGTCCCAACAGTTAGAAAAAGA 59.565 34.615 2.40 0.00 36.57 2.52
5685 7292 8.267894 ACTGTGCTCACCTATATTAAGAACAAT 58.732 33.333 0.00 0.00 0.00 2.71
5835 7442 6.641176 TGTGTGACACAATATGTATCGTTC 57.359 37.500 17.13 0.00 43.56 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.