Multiple sequence alignment - TraesCS2A01G458200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G458200 chr2A 100.000 1952 0 0 979 2930 705945433 705947384 0.000000e+00 3605
1 TraesCS2A01G458200 chr2A 96.669 1681 46 3 1253 2930 36893474 36895147 0.000000e+00 2785
2 TraesCS2A01G458200 chr2A 100.000 649 0 0 1 649 705944455 705945103 0.000000e+00 1199
3 TraesCS2A01G458200 chr2A 95.745 282 9 1 979 1257 36884047 36884328 4.450000e-123 451
4 TraesCS2A01G458200 chr6A 96.476 1958 54 5 979 2930 60395974 60397922 0.000000e+00 3219
5 TraesCS2A01G458200 chr7A 96.170 1958 62 4 979 2930 419044433 419042483 0.000000e+00 3188
6 TraesCS2A01G458200 chr6B 85.357 840 110 11 1001 1831 664394216 664393381 0.000000e+00 857
7 TraesCS2A01G458200 chr6B 79.837 491 85 10 2085 2572 664393140 664392661 2.160000e-91 346
8 TraesCS2A01G458200 chr3A 86.647 689 86 4 1151 1835 99582175 99582861 0.000000e+00 758
9 TraesCS2A01G458200 chr2B 88.983 472 47 4 3 471 677966557 677966088 1.960000e-161 579
10 TraesCS2A01G458200 chr2B 84.000 475 48 10 1 471 678078439 678078889 5.800000e-117 431
11 TraesCS2A01G458200 chr2B 92.593 81 3 3 570 649 678078877 678078955 2.390000e-21 113
12 TraesCS2A01G458200 chr5A 79.248 824 155 14 982 1795 557068446 557067629 7.090000e-156 560
13 TraesCS2A01G458200 chr2D 90.828 338 29 2 1 338 565738825 565739160 4.450000e-123 451
14 TraesCS2A01G458200 chr2D 88.811 143 15 1 1 143 565600113 565600254 1.080000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G458200 chr2A 705944455 705947384 2929 False 2402.0 3605 100.0000 1 2930 2 chr2A.!!$F3 2929
1 TraesCS2A01G458200 chr2A 36893474 36895147 1673 False 2785.0 2785 96.6690 1253 2930 1 chr2A.!!$F2 1677
2 TraesCS2A01G458200 chr6A 60395974 60397922 1948 False 3219.0 3219 96.4760 979 2930 1 chr6A.!!$F1 1951
3 TraesCS2A01G458200 chr7A 419042483 419044433 1950 True 3188.0 3188 96.1700 979 2930 1 chr7A.!!$R1 1951
4 TraesCS2A01G458200 chr6B 664392661 664394216 1555 True 601.5 857 82.5970 1001 2572 2 chr6B.!!$R1 1571
5 TraesCS2A01G458200 chr3A 99582175 99582861 686 False 758.0 758 86.6470 1151 1835 1 chr3A.!!$F1 684
6 TraesCS2A01G458200 chr2B 678078439 678078955 516 False 272.0 431 88.2965 1 649 2 chr2B.!!$F1 648
7 TraesCS2A01G458200 chr5A 557067629 557068446 817 True 560.0 560 79.2480 982 1795 1 chr5A.!!$R1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.609131 CCTGGTGTAGGTGCTTTGGG 60.609 60.0 0.0 0.0 42.0 4.12 F
143 144 0.609131 CTGGTGTAGGTGCTTTGGGG 60.609 60.0 0.0 0.0 0.0 4.96 F
1214 1223 0.822532 CCTACGGCCGATGTACCTCT 60.823 60.0 35.9 8.5 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1053 1058 0.250209 CGCTGCCATGGCTTAGATCT 60.250 55.000 35.53 0.0 42.51 2.75 R
1901 1917 1.996191 GGCTCTGCAAACTAGAACTCG 59.004 52.381 0.00 0.0 0.00 4.18 R
2272 2365 2.807967 TGCGACTTCAGAAAACATCCTG 59.192 45.455 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.838244 TCATCGGTAATTTGGAGGAGG 57.162 47.619 0.00 0.00 0.00 4.30
57 58 2.438021 TCATCGGTAATTTGGAGGAGGG 59.562 50.000 0.00 0.00 0.00 4.30
72 73 5.734140 TGGAGGAGGGTTTTGGAGAAATATA 59.266 40.000 0.00 0.00 0.00 0.86
73 74 6.218730 TGGAGGAGGGTTTTGGAGAAATATAA 59.781 38.462 0.00 0.00 0.00 0.98
74 75 7.123383 GGAGGAGGGTTTTGGAGAAATATAAA 58.877 38.462 0.00 0.00 0.00 1.40
75 76 7.285629 GGAGGAGGGTTTTGGAGAAATATAAAG 59.714 40.741 0.00 0.00 0.00 1.85
76 77 6.607600 AGGAGGGTTTTGGAGAAATATAAAGC 59.392 38.462 0.00 0.00 0.00 3.51
77 78 6.607600 GGAGGGTTTTGGAGAAATATAAAGCT 59.392 38.462 0.00 0.00 0.00 3.74
78 79 7.778382 GGAGGGTTTTGGAGAAATATAAAGCTA 59.222 37.037 0.00 0.00 0.00 3.32
79 80 8.753497 AGGGTTTTGGAGAAATATAAAGCTAG 57.247 34.615 0.00 0.00 0.00 3.42
80 81 7.780271 AGGGTTTTGGAGAAATATAAAGCTAGG 59.220 37.037 0.00 0.00 0.00 3.02
81 82 7.014326 GGGTTTTGGAGAAATATAAAGCTAGGG 59.986 40.741 0.00 0.00 0.00 3.53
122 123 4.473520 CCCCACAGGCTGTAGGCG 62.474 72.222 24.51 14.74 46.23 5.52
130 131 4.394712 GCTGTAGGCGCCTGGTGT 62.395 66.667 38.98 15.51 0.00 4.16
131 132 3.014085 GCTGTAGGCGCCTGGTGTA 62.014 63.158 38.98 16.51 0.00 2.90
132 133 1.141881 CTGTAGGCGCCTGGTGTAG 59.858 63.158 38.98 22.86 0.00 2.74
141 142 2.946947 CCTGGTGTAGGTGCTTTGG 58.053 57.895 0.00 0.00 42.00 3.28
142 143 0.609131 CCTGGTGTAGGTGCTTTGGG 60.609 60.000 0.00 0.00 42.00 4.12
143 144 0.609131 CTGGTGTAGGTGCTTTGGGG 60.609 60.000 0.00 0.00 0.00 4.96
149 150 4.299796 GGTGCTTTGGGGCCCTGA 62.300 66.667 25.93 9.89 0.00 3.86
150 151 2.037847 GTGCTTTGGGGCCCTGAT 59.962 61.111 25.93 0.00 0.00 2.90
177 178 2.555547 GGGGCGCCTATGCAATGTC 61.556 63.158 28.56 4.74 37.32 3.06
190 191 1.471676 GCAATGTCGGTCACCCTCTAG 60.472 57.143 0.00 0.00 0.00 2.43
198 199 1.477295 GGTCACCCTCTAGTTCTTCCG 59.523 57.143 0.00 0.00 0.00 4.30
208 209 6.166982 CCTCTAGTTCTTCCGATTGTTCTTT 58.833 40.000 0.00 0.00 0.00 2.52
212 213 4.881850 AGTTCTTCCGATTGTTCTTTGTGT 59.118 37.500 0.00 0.00 0.00 3.72
222 223 3.659786 TGTTCTTTGTGTAGATCCACGG 58.340 45.455 0.00 0.00 38.20 4.94
241 242 1.407258 GGAGTGCTGCAGTACCTCTAG 59.593 57.143 28.44 0.00 0.00 2.43
281 283 3.489398 CCTCGGAGGTGTATTCTTCTTCG 60.489 52.174 16.15 0.00 0.00 3.79
282 284 3.349927 TCGGAGGTGTATTCTTCTTCGA 58.650 45.455 0.00 0.00 0.00 3.71
293 295 6.537660 TGTATTCTTCTTCGACACTAGATCGA 59.462 38.462 16.40 16.40 46.39 3.59
342 344 4.857509 CTGGGAGATACAACCTAGCTAC 57.142 50.000 0.00 0.00 0.00 3.58
353 355 1.461091 CCTAGCTACGGGAATCGGCA 61.461 60.000 0.00 0.00 44.45 5.69
357 359 1.021968 GCTACGGGAATCGGCAAAAT 58.978 50.000 0.00 0.00 44.45 1.82
379 384 3.544698 TCACCAACTCCTCCTCTACTT 57.455 47.619 0.00 0.00 0.00 2.24
381 386 3.076182 TCACCAACTCCTCCTCTACTTCT 59.924 47.826 0.00 0.00 0.00 2.85
383 388 3.181416 ACCAACTCCTCCTCTACTTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
391 396 4.323028 CCTCCTCTACTTCTGTTGCATGAA 60.323 45.833 0.00 0.00 0.00 2.57
401 406 5.565592 TCTGTTGCATGAATCATTGGTAC 57.434 39.130 0.00 0.00 0.00 3.34
424 429 5.337554 CGATAATCGTCACTTGTACCTTCA 58.662 41.667 0.00 0.00 34.72 3.02
444 449 5.940192 TCATAGTGTTTGTTGGTGTGATC 57.060 39.130 0.00 0.00 0.00 2.92
445 450 4.450757 TCATAGTGTTTGTTGGTGTGATCG 59.549 41.667 0.00 0.00 0.00 3.69
451 456 3.047280 TTGGTGTGATCGTGCGCC 61.047 61.111 4.18 7.21 35.93 6.53
471 476 5.503194 GCGCCAATATTTTGTTGTTGTTGTT 60.503 36.000 0.00 0.00 0.00 2.83
472 477 5.900789 CGCCAATATTTTGTTGTTGTTGTTG 59.099 36.000 0.00 0.00 0.00 3.33
473 478 6.456181 CGCCAATATTTTGTTGTTGTTGTTGT 60.456 34.615 0.00 0.00 0.00 3.32
474 479 7.247019 GCCAATATTTTGTTGTTGTTGTTGTT 58.753 30.769 0.00 0.00 0.00 2.83
475 480 7.217825 GCCAATATTTTGTTGTTGTTGTTGTTG 59.782 33.333 0.00 0.00 0.00 3.33
476 481 8.233190 CCAATATTTTGTTGTTGTTGTTGTTGT 58.767 29.630 0.00 0.00 0.00 3.32
477 482 9.604626 CAATATTTTGTTGTTGTTGTTGTTGTT 57.395 25.926 0.00 0.00 0.00 2.83
478 483 9.604626 AATATTTTGTTGTTGTTGTTGTTGTTG 57.395 25.926 0.00 0.00 0.00 3.33
479 484 6.422776 TTTTGTTGTTGTTGTTGTTGTTGT 57.577 29.167 0.00 0.00 0.00 3.32
480 485 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
481 486 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
482 487 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
483 488 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
484 489 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
485 490 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
486 491 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
487 492 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
488 493 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
489 494 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
490 495 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
491 496 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
492 497 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
493 498 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
494 499 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
495 500 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
496 501 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
497 502 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
498 503 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
499 504 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
500 505 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
501 506 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
502 507 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
503 508 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
504 509 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
505 510 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
506 511 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
507 512 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
508 513 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
509 514 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
510 515 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
511 516 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
512 517 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
513 518 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
514 519 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
515 520 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
516 521 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
517 522 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
518 523 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
519 524 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
520 525 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
521 526 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
522 527 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
523 528 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
524 529 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
525 530 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
526 531 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
527 532 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
528 533 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
529 534 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
530 535 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
531 536 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
532 537 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
533 538 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
534 539 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
535 540 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
536 541 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
537 542 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
538 543 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
539 544 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
540 545 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
541 546 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
542 547 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
543 548 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
544 549 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
545 550 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
546 551 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
547 552 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
548 553 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
549 554 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
550 555 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
551 556 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
552 557 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
553 558 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
554 559 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
555 560 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
556 561 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
557 562 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
558 563 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
559 564 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
560 565 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
561 566 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
562 567 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
563 568 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
564 569 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
565 570 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
566 571 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
567 572 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
568 573 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
569 574 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
570 575 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
571 576 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
572 577 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
573 578 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
574 579 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
575 580 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
576 581 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
577 582 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
578 583 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
579 584 5.193936 GTTGTTGTTGTTGTTGTTGTTGTG 58.806 37.500 0.00 0.00 0.00 3.33
580 585 4.433615 TGTTGTTGTTGTTGTTGTTGTGT 58.566 34.783 0.00 0.00 0.00 3.72
581 586 5.588240 TGTTGTTGTTGTTGTTGTTGTGTA 58.412 33.333 0.00 0.00 0.00 2.90
582 587 5.687730 TGTTGTTGTTGTTGTTGTTGTGTAG 59.312 36.000 0.00 0.00 0.00 2.74
583 588 5.440234 TGTTGTTGTTGTTGTTGTGTAGT 57.560 34.783 0.00 0.00 0.00 2.73
584 589 6.555812 TGTTGTTGTTGTTGTTGTGTAGTA 57.444 33.333 0.00 0.00 0.00 1.82
595 600 6.932400 TGTTGTTGTGTAGTACATTCCCTTAG 59.068 38.462 6.21 0.00 39.48 2.18
600 605 8.665685 GTTGTGTAGTACATTCCCTTAGAATTG 58.334 37.037 6.21 0.00 42.86 2.32
612 617 4.949856 CCCTTAGAATTGGTACTTGCATGT 59.050 41.667 10.40 10.40 0.00 3.21
1053 1058 4.348486 GAGGGAGCTCAGTCATATCCATA 58.652 47.826 17.19 0.00 0.00 2.74
1071 1076 2.847327 TAGATCTAAGCCATGGCAGC 57.153 50.000 37.18 20.17 44.88 5.25
1194 1203 2.202987 GATCTGCAGCCCGTCCAG 60.203 66.667 9.47 0.00 0.00 3.86
1214 1223 0.822532 CCTACGGCCGATGTACCTCT 60.823 60.000 35.90 8.50 0.00 3.69
1688 1704 4.801330 TGAAGACCACAATACTCGACAT 57.199 40.909 0.00 0.00 0.00 3.06
1822 1838 4.083110 AGTGTAGTTTGTTGCTGATCATGC 60.083 41.667 0.00 2.91 0.00 4.06
1853 1869 5.883115 TGAATTAGGATGTTTCGCCACATTA 59.117 36.000 1.38 0.00 37.52 1.90
1922 1938 2.353208 CGAGTTCTAGTTTGCAGAGCCT 60.353 50.000 0.00 0.00 0.00 4.58
2010 2026 3.671971 CGATTTTGTTTCTATTGGCCGCA 60.672 43.478 0.00 0.00 0.00 5.69
2191 2283 6.381498 TTCCTGTCATCAGTACCCATTTTA 57.619 37.500 0.00 0.00 39.82 1.52
2272 2365 8.881743 TGCAATGCATATTTTTCTGTTTAATCC 58.118 29.630 2.72 0.00 31.71 3.01
2284 2377 8.477419 TTTCTGTTTAATCCAGGATGTTTTCT 57.523 30.769 1.44 0.00 0.00 2.52
2313 2406 3.118038 GCATATGTACTGAGGGGGAAACA 60.118 47.826 4.29 0.00 0.00 2.83
2371 2464 5.659525 ACCACTGCCAACATATAGTGTACTA 59.340 40.000 0.00 0.00 41.14 1.82
2501 2594 5.069251 ACCTCATGATTAAGAAGGTACTCCG 59.931 44.000 0.00 0.00 38.49 4.63
2502 2595 5.069251 CCTCATGATTAAGAAGGTACTCCGT 59.931 44.000 0.00 0.00 38.49 4.69
2503 2596 6.264744 CCTCATGATTAAGAAGGTACTCCGTA 59.735 42.308 0.00 0.00 38.49 4.02
2504 2597 7.035840 TCATGATTAAGAAGGTACTCCGTAC 57.964 40.000 0.00 0.00 38.49 3.67
2505 2598 6.832384 TCATGATTAAGAAGGTACTCCGTACT 59.168 38.462 0.00 0.00 38.49 2.73
2506 2599 6.690194 TGATTAAGAAGGTACTCCGTACTC 57.310 41.667 4.40 0.00 38.49 2.59
2507 2600 5.591877 TGATTAAGAAGGTACTCCGTACTCC 59.408 44.000 4.40 0.00 38.49 3.85
2508 2601 2.433662 AGAAGGTACTCCGTACTCCC 57.566 55.000 4.40 0.00 38.49 4.30
2604 2697 6.434340 AGTTAGTTGCCTATTTCCCAGAAAAG 59.566 38.462 0.00 0.00 0.00 2.27
2609 2702 3.444034 GCCTATTTCCCAGAAAAGGTGAC 59.556 47.826 14.30 0.00 0.00 3.67
2771 2867 4.714632 CTTAGGTTCAGTTCCTGTTTGGA 58.285 43.478 0.00 0.00 44.51 3.53
2828 2924 4.642437 GTCAGTGATCTCATGACTGTAGGA 59.358 45.833 14.43 0.00 40.14 2.94
2845 2941 3.717452 AGGACTCTACACCGACTAGTT 57.283 47.619 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.889722 TCCTCCAAATTACCGATGATCTTTTT 59.110 34.615 0.00 0.00 0.00 1.94
34 35 4.319177 CCTCCTCCAAATTACCGATGATC 58.681 47.826 0.00 0.00 0.00 2.92
42 43 4.412843 TCCAAAACCCTCCTCCAAATTAC 58.587 43.478 0.00 0.00 0.00 1.89
50 51 7.201830 GCTTTATATTTCTCCAAAACCCTCCTC 60.202 40.741 0.00 0.00 0.00 3.71
56 57 7.014326 CCCCTAGCTTTATATTTCTCCAAAACC 59.986 40.741 0.00 0.00 0.00 3.27
57 58 7.470147 GCCCCTAGCTTTATATTTCTCCAAAAC 60.470 40.741 0.00 0.00 38.99 2.43
72 73 1.566298 CCTCTGGTGCCCCTAGCTTT 61.566 60.000 0.00 0.00 44.23 3.51
73 74 1.997874 CCTCTGGTGCCCCTAGCTT 60.998 63.158 0.00 0.00 44.23 3.74
74 75 2.366167 CCTCTGGTGCCCCTAGCT 60.366 66.667 0.00 0.00 44.23 3.32
75 76 4.182433 GCCTCTGGTGCCCCTAGC 62.182 72.222 0.00 0.00 44.14 3.42
76 77 2.366167 AGCCTCTGGTGCCCCTAG 60.366 66.667 0.00 0.00 0.00 3.02
77 78 2.688666 CAGCCTCTGGTGCCCCTA 60.689 66.667 0.00 0.00 32.48 3.53
114 115 1.141881 CTACACCAGGCGCCTACAG 59.858 63.158 32.30 22.97 0.00 2.74
124 125 0.609131 CCCCAAAGCACCTACACCAG 60.609 60.000 0.00 0.00 0.00 4.00
125 126 1.458486 CCCCAAAGCACCTACACCA 59.542 57.895 0.00 0.00 0.00 4.17
126 127 1.977009 GCCCCAAAGCACCTACACC 60.977 63.158 0.00 0.00 0.00 4.16
127 128 1.977009 GGCCCCAAAGCACCTACAC 60.977 63.158 0.00 0.00 0.00 2.90
128 129 2.438795 GGCCCCAAAGCACCTACA 59.561 61.111 0.00 0.00 0.00 2.74
129 130 2.362503 GGGCCCCAAAGCACCTAC 60.363 66.667 12.23 0.00 0.00 3.18
130 131 2.534272 AGGGCCCCAAAGCACCTA 60.534 61.111 21.43 0.00 36.58 3.08
131 132 4.305956 CAGGGCCCCAAAGCACCT 62.306 66.667 21.43 0.00 36.58 4.00
132 133 3.607084 ATCAGGGCCCCAAAGCACC 62.607 63.158 21.43 0.00 36.58 5.01
133 134 1.610379 AATCAGGGCCCCAAAGCAC 60.610 57.895 21.43 0.00 35.96 4.40
134 135 1.610086 CAATCAGGGCCCCAAAGCA 60.610 57.895 21.43 0.00 0.00 3.91
143 144 2.761213 CCCCTTGGCAATCAGGGC 60.761 66.667 16.05 0.00 40.91 5.19
198 199 5.163854 CCGTGGATCTACACAAAGAACAATC 60.164 44.000 10.08 0.00 41.38 2.67
208 209 0.530744 GCACTCCGTGGATCTACACA 59.469 55.000 10.08 0.00 41.38 3.72
212 213 0.970427 TGCAGCACTCCGTGGATCTA 60.970 55.000 0.00 0.00 33.64 1.98
222 223 2.370349 TCTAGAGGTACTGCAGCACTC 58.630 52.381 15.27 17.97 41.55 3.51
230 231 4.340666 ACACATGCTGATCTAGAGGTACTG 59.659 45.833 0.00 0.00 41.55 2.74
241 242 3.397482 GAGGTATCCACACATGCTGATC 58.603 50.000 0.00 0.00 0.00 2.92
281 283 2.873472 AGTGATCCGTCGATCTAGTGTC 59.127 50.000 0.00 0.00 44.61 3.67
282 284 2.873472 GAGTGATCCGTCGATCTAGTGT 59.127 50.000 0.00 0.00 44.61 3.55
293 295 4.911390 AGAATTTCTTTGGAGTGATCCGT 58.089 39.130 0.00 0.00 0.00 4.69
300 302 2.814336 GCCGTGAGAATTTCTTTGGAGT 59.186 45.455 13.57 0.00 0.00 3.85
301 303 3.077359 AGCCGTGAGAATTTCTTTGGAG 58.923 45.455 13.57 0.49 0.00 3.86
341 343 1.889829 TGAAATTTTGCCGATTCCCGT 59.110 42.857 0.00 0.00 36.31 5.28
342 344 2.258755 GTGAAATTTTGCCGATTCCCG 58.741 47.619 0.00 0.00 38.18 5.14
353 355 5.066913 AGAGGAGGAGTTGGTGAAATTTT 57.933 39.130 0.00 0.00 0.00 1.82
357 359 3.858135 AGTAGAGGAGGAGTTGGTGAAA 58.142 45.455 0.00 0.00 0.00 2.69
379 384 4.094739 CGTACCAATGATTCATGCAACAGA 59.905 41.667 0.00 0.00 0.00 3.41
381 386 4.006319 TCGTACCAATGATTCATGCAACA 58.994 39.130 0.00 0.00 0.00 3.33
383 388 6.934048 TTATCGTACCAATGATTCATGCAA 57.066 33.333 0.00 0.00 33.32 4.08
401 406 5.337554 TGAAGGTACAAGTGACGATTATCG 58.662 41.667 13.43 13.43 46.93 2.92
424 429 4.213270 CACGATCACACCAACAAACACTAT 59.787 41.667 0.00 0.00 0.00 2.12
444 449 2.323959 ACAACAAAATATTGGCGCACG 58.676 42.857 10.83 0.00 41.01 5.34
445 450 3.492756 ACAACAACAAAATATTGGCGCAC 59.507 39.130 10.83 0.00 41.01 5.34
451 456 9.604626 AACAACAACAACAACAACAAAATATTG 57.395 25.926 0.00 0.00 42.46 1.90
471 476 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
472 477 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
473 478 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
474 479 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
475 480 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
476 481 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
477 482 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
478 483 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
479 484 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
480 485 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
481 486 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
482 487 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
483 488 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
484 489 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
485 490 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
486 491 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
487 492 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
488 493 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
489 494 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
490 495 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
491 496 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
492 497 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
493 498 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
494 499 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
495 500 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
496 501 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
497 502 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
498 503 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
499 504 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
500 505 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
501 506 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
502 507 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
503 508 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
504 509 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
505 510 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
506 511 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
507 512 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
508 513 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
509 514 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
510 515 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
511 516 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
512 517 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
513 518 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
514 519 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
515 520 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
516 521 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
517 522 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
518 523 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
519 524 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
520 525 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
521 526 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
522 527 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
523 528 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
524 529 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
525 530 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
526 531 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
527 532 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
528 533 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
529 534 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
530 535 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
531 536 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
532 537 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
533 538 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
534 539 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
535 540 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
536 541 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
537 542 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
538 543 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
539 544 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
540 545 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
541 546 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
542 547 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
543 548 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
544 549 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
545 550 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
546 551 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
547 552 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
548 553 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
549 554 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
550 555 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
551 556 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
552 557 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
553 558 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
554 559 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
555 560 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
556 561 5.193936 CACAACAACAACAACAACAACAAC 58.806 37.500 0.00 0.00 0.00 3.32
557 562 4.870426 ACACAACAACAACAACAACAACAA 59.130 33.333 0.00 0.00 0.00 2.83
558 563 4.433615 ACACAACAACAACAACAACAACA 58.566 34.783 0.00 0.00 0.00 3.33
559 564 5.688176 ACTACACAACAACAACAACAACAAC 59.312 36.000 0.00 0.00 0.00 3.32
560 565 5.833082 ACTACACAACAACAACAACAACAA 58.167 33.333 0.00 0.00 0.00 2.83
561 566 5.440234 ACTACACAACAACAACAACAACA 57.560 34.783 0.00 0.00 0.00 3.33
562 567 6.372185 TGTACTACACAACAACAACAACAAC 58.628 36.000 0.00 0.00 32.95 3.32
563 568 6.555812 TGTACTACACAACAACAACAACAA 57.444 33.333 0.00 0.00 32.95 2.83
564 569 6.745159 ATGTACTACACAACAACAACAACA 57.255 33.333 0.00 0.00 41.55 3.33
565 570 6.689669 GGAATGTACTACACAACAACAACAAC 59.310 38.462 0.00 0.00 41.55 3.32
566 571 6.183360 GGGAATGTACTACACAACAACAACAA 60.183 38.462 0.00 0.00 41.55 2.83
567 572 5.297278 GGGAATGTACTACACAACAACAACA 59.703 40.000 0.00 0.00 41.55 3.33
568 573 5.529800 AGGGAATGTACTACACAACAACAAC 59.470 40.000 0.00 0.00 41.55 3.32
569 574 5.686753 AGGGAATGTACTACACAACAACAA 58.313 37.500 0.00 0.00 41.55 2.83
570 575 5.298989 AGGGAATGTACTACACAACAACA 57.701 39.130 0.00 0.00 41.55 3.33
571 576 7.156673 TCTAAGGGAATGTACTACACAACAAC 58.843 38.462 0.00 0.00 41.55 3.32
572 577 7.305813 TCTAAGGGAATGTACTACACAACAA 57.694 36.000 0.00 0.00 41.55 2.83
573 578 6.921486 TCTAAGGGAATGTACTACACAACA 57.079 37.500 0.00 0.00 41.55 3.33
574 579 8.665685 CAATTCTAAGGGAATGTACTACACAAC 58.334 37.037 0.00 0.00 43.17 3.32
575 580 7.827236 CCAATTCTAAGGGAATGTACTACACAA 59.173 37.037 0.00 0.00 43.17 3.33
576 581 7.037873 ACCAATTCTAAGGGAATGTACTACACA 60.038 37.037 0.00 0.00 43.17 3.72
577 582 7.336396 ACCAATTCTAAGGGAATGTACTACAC 58.664 38.462 0.00 0.00 43.17 2.90
578 583 7.504926 ACCAATTCTAAGGGAATGTACTACA 57.495 36.000 0.00 0.00 43.17 2.74
579 584 8.702819 AGTACCAATTCTAAGGGAATGTACTAC 58.297 37.037 14.29 4.85 43.94 2.73
580 585 8.849543 AGTACCAATTCTAAGGGAATGTACTA 57.150 34.615 14.29 0.00 43.94 1.82
581 586 7.750947 AGTACCAATTCTAAGGGAATGTACT 57.249 36.000 11.95 11.95 42.64 2.73
582 587 7.201705 GCAAGTACCAATTCTAAGGGAATGTAC 60.202 40.741 0.00 0.00 43.17 2.90
583 588 6.826741 GCAAGTACCAATTCTAAGGGAATGTA 59.173 38.462 0.00 0.00 43.17 2.29
584 589 5.652452 GCAAGTACCAATTCTAAGGGAATGT 59.348 40.000 0.00 0.00 43.17 2.71
595 600 7.437862 TCAAAAGAAACATGCAAGTACCAATTC 59.562 33.333 0.00 0.00 0.00 2.17
600 605 5.634859 CCATCAAAAGAAACATGCAAGTACC 59.365 40.000 0.00 0.00 0.00 3.34
612 617 3.243359 AGAGGTGGCCATCAAAAGAAA 57.757 42.857 20.62 0.00 0.00 2.52
1053 1058 0.250209 CGCTGCCATGGCTTAGATCT 60.250 55.000 35.53 0.00 42.51 2.75
1071 1076 2.544685 AGAGATTCGCCTGATTCAACG 58.455 47.619 3.07 3.07 0.00 4.10
1214 1223 4.141135 ACTCTGGATCCGGAATCTCTTCTA 60.141 45.833 23.67 0.00 34.56 2.10
1291 1300 3.279434 AGACGAAAGCCACTTTTCTTGT 58.721 40.909 0.00 0.00 33.49 3.16
1399 1412 7.267128 AGAAGAAATTTGAATGTCTGCAAACA 58.733 30.769 0.00 0.00 36.89 2.83
1688 1704 6.627087 ACCTCCTTGACATCTTAATCTCAA 57.373 37.500 0.00 0.00 0.00 3.02
1813 1829 3.990318 ATTCAGCACATGCATGATCAG 57.010 42.857 32.75 18.54 45.16 2.90
1822 1838 5.268544 CGAAACATCCTAATTCAGCACATG 58.731 41.667 0.00 0.00 0.00 3.21
1889 1905 3.451178 ACTAGAACTCGGTTGGCACATAT 59.549 43.478 0.00 0.00 39.30 1.78
1901 1917 1.996191 GGCTCTGCAAACTAGAACTCG 59.004 52.381 0.00 0.00 0.00 4.18
2010 2026 7.499895 ACTTTCAATGGAAAACAATTCTTGCAT 59.500 29.630 0.00 0.00 42.18 3.96
2100 2116 9.672673 ATGCCTATGGAACTTTATATGTATCAC 57.327 33.333 0.00 0.00 0.00 3.06
2272 2365 2.807967 TGCGACTTCAGAAAACATCCTG 59.192 45.455 0.00 0.00 0.00 3.86
2284 2377 3.068165 CCCTCAGTACATATGCGACTTCA 59.932 47.826 1.58 0.00 0.00 3.02
2313 2406 4.401925 CTGGTTGGGAAAGAGAATGAACT 58.598 43.478 0.00 0.00 0.00 3.01
2371 2464 6.099341 GCGACCAAACTTCATAATTGGAAAT 58.901 36.000 10.50 0.00 45.14 2.17
2457 2550 4.083565 GGTTTACAGTGAAAATGGCCCTA 58.916 43.478 0.00 0.00 35.33 3.53
2501 2594 6.819947 TTTATAAAGGGAAGAGGGGAGTAC 57.180 41.667 0.00 0.00 0.00 2.73
2502 2595 6.159222 GGTTTTATAAAGGGAAGAGGGGAGTA 59.841 42.308 0.00 0.00 0.00 2.59
2503 2596 5.044328 GGTTTTATAAAGGGAAGAGGGGAGT 60.044 44.000 0.00 0.00 0.00 3.85
2504 2597 5.044402 TGGTTTTATAAAGGGAAGAGGGGAG 60.044 44.000 0.00 0.00 0.00 4.30
2505 2598 4.859104 TGGTTTTATAAAGGGAAGAGGGGA 59.141 41.667 0.00 0.00 0.00 4.81
2506 2599 5.201363 TGGTTTTATAAAGGGAAGAGGGG 57.799 43.478 0.00 0.00 0.00 4.79
2507 2600 6.431722 TGATGGTTTTATAAAGGGAAGAGGG 58.568 40.000 0.00 0.00 0.00 4.30
2508 2601 7.954666 TTGATGGTTTTATAAAGGGAAGAGG 57.045 36.000 0.00 0.00 0.00 3.69
2604 2697 5.000012 AGTTCACGATCTGATTAGTCACC 58.000 43.478 0.00 0.00 0.00 4.02
2609 2702 8.824159 ATGGAATAAGTTCACGATCTGATTAG 57.176 34.615 0.00 0.00 36.01 1.73
2771 2867 8.694581 AAAATTCATCAAATCCACCAACAAAT 57.305 26.923 0.00 0.00 0.00 2.32
2828 2924 4.219264 AGCTAACTAGTCGGTGTAGAGT 57.781 45.455 0.00 0.00 0.00 3.24
2845 2941 4.021229 TCTCCGACCAGTTTATCAAGCTA 58.979 43.478 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.