Multiple sequence alignment - TraesCS2A01G457300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G457300 chr2A 100.000 2441 0 0 1 2441 705785310 705782870 0.000000e+00 4508
1 TraesCS2A01G457300 chr2D 91.872 2067 90 26 4 2016 565184140 565182098 0.000000e+00 2815
2 TraesCS2A01G457300 chr2B 90.333 2069 103 39 4 2018 677220051 677218026 0.000000e+00 2623
3 TraesCS2A01G457300 chr2B 91.919 99 6 1 2013 2111 677211415 677211319 1.180000e-28 137
4 TraesCS2A01G457300 chr4A 79.310 1392 190 54 421 1764 712966641 712965300 0.000000e+00 885
5 TraesCS2A01G457300 chr7A 82.039 863 107 27 918 1764 20402174 20401344 0.000000e+00 691
6 TraesCS2A01G457300 chr7A 85.459 447 53 7 924 1362 20226163 20225721 2.860000e-124 455
7 TraesCS2A01G457300 chr7D 87.523 545 58 3 918 1462 20516220 20515686 2.670000e-174 621
8 TraesCS2A01G457300 chr7D 86.652 442 53 4 925 1362 20117610 20117171 3.650000e-133 484
9 TraesCS2A01G457300 chr3B 89.030 237 25 1 2206 2441 607222456 607222220 2.370000e-75 292
10 TraesCS2A01G457300 chr4B 88.608 237 26 1 2206 2441 396519603 396519839 1.100000e-73 287
11 TraesCS2A01G457300 chr6B 88.559 236 25 2 2207 2441 377824947 377824713 3.970000e-73 285
12 TraesCS2A01G457300 chr6B 88.235 238 23 4 2206 2440 126922853 126923088 1.850000e-71 279
13 TraesCS2A01G457300 chrUn 88.462 234 26 1 2209 2441 147247691 147247924 5.140000e-72 281
14 TraesCS2A01G457300 chrUn 88.462 234 26 1 2209 2441 279384344 279384577 5.140000e-72 281
15 TraesCS2A01G457300 chr7B 88.462 234 26 1 2209 2441 474288764 474288531 5.140000e-72 281
16 TraesCS2A01G457300 chr7B 88.362 232 26 1 2211 2441 670902602 670902833 6.650000e-71 278
17 TraesCS2A01G457300 chr5A 87.347 245 28 3 2199 2441 40613921 40613678 6.650000e-71 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G457300 chr2A 705782870 705785310 2440 True 4508 4508 100.000 1 2441 1 chr2A.!!$R1 2440
1 TraesCS2A01G457300 chr2D 565182098 565184140 2042 True 2815 2815 91.872 4 2016 1 chr2D.!!$R1 2012
2 TraesCS2A01G457300 chr2B 677218026 677220051 2025 True 2623 2623 90.333 4 2018 1 chr2B.!!$R2 2014
3 TraesCS2A01G457300 chr4A 712965300 712966641 1341 True 885 885 79.310 421 1764 1 chr4A.!!$R1 1343
4 TraesCS2A01G457300 chr7A 20401344 20402174 830 True 691 691 82.039 918 1764 1 chr7A.!!$R2 846
5 TraesCS2A01G457300 chr7D 20515686 20516220 534 True 621 621 87.523 918 1462 1 chr7D.!!$R2 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 978 0.040157 TGACGCTGCAATGCACTTTC 60.04 50.0 2.72 0.88 33.79 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2383 2473 0.106918 TCTTGCCCGGTGTCAAAAGT 60.107 50.0 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 4.144703 GCTCGGTTCCGGGGAGAC 62.145 72.222 13.13 0.00 0.00 3.36
177 178 2.575455 ATCGGCGTCTCCCCTCTCTT 62.575 60.000 6.85 0.00 0.00 2.85
188 189 1.480498 CCCCTCTCTTAGGCCTCTCTC 60.480 61.905 9.68 0.00 45.03 3.20
189 190 1.480498 CCCTCTCTTAGGCCTCTCTCC 60.480 61.905 9.68 0.00 45.03 3.71
276 277 2.798364 GGCCGCTAGGTCTTCTCCC 61.798 68.421 0.00 0.00 39.58 4.30
333 334 2.629051 AGGATTTCGTTCCGATGTTCC 58.371 47.619 0.00 0.00 40.94 3.62
334 335 1.669265 GGATTTCGTTCCGATGTTCCC 59.331 52.381 0.00 0.00 35.23 3.97
371 396 1.094785 CGCAAATCTGGATCGGGTTT 58.905 50.000 0.00 0.00 0.00 3.27
419 444 0.911769 AGGGTTGCTATGCTGCAGTA 59.088 50.000 16.64 12.13 44.27 2.74
449 474 9.213799 GGTTTTCTCATAATTTATTGTGCCAAA 57.786 29.630 0.00 0.00 0.00 3.28
456 481 7.816995 TCATAATTTATTGTGCCAAACAGAACC 59.183 33.333 0.00 0.00 40.74 3.62
487 512 9.686683 AACAGCAGAAGTAATTATAGTTCCAAT 57.313 29.630 0.00 0.00 40.79 3.16
488 513 9.113838 ACAGCAGAAGTAATTATAGTTCCAATG 57.886 33.333 0.00 1.08 40.79 2.82
536 563 6.512297 GGTTTTGCCTTTTAGTTGAATCAGA 58.488 36.000 0.00 0.00 0.00 3.27
544 571 7.859875 GCCTTTTAGTTGAATCAGATTGATAGC 59.140 37.037 0.00 0.00 35.76 2.97
545 572 8.896744 CCTTTTAGTTGAATCAGATTGATAGCA 58.103 33.333 0.00 0.00 35.76 3.49
549 576 7.934855 AGTTGAATCAGATTGATAGCAAACT 57.065 32.000 0.00 0.00 35.76 2.66
612 651 8.328758 TGTAGAAAGTTTATGACTGGATGGATT 58.671 33.333 0.00 0.00 39.00 3.01
670 717 4.062293 TCGTGGTATTTCTGGAAACACTG 58.938 43.478 4.80 3.98 35.60 3.66
711 761 3.904136 ACACTTTTCAAGATTGCTCGG 57.096 42.857 0.00 0.00 0.00 4.63
712 762 3.476552 ACACTTTTCAAGATTGCTCGGA 58.523 40.909 0.00 0.00 0.00 4.55
742 792 3.184541 GCTTCAGCAATATGTTTGCCTG 58.815 45.455 10.54 8.86 45.98 4.85
829 881 5.182950 TGATTATTGCCAACTGTGTGTTAGG 59.817 40.000 0.00 0.00 37.07 2.69
830 882 2.719531 TTGCCAACTGTGTGTTAGGA 57.280 45.000 0.00 0.00 37.07 2.94
831 883 1.961793 TGCCAACTGTGTGTTAGGAC 58.038 50.000 0.00 0.00 37.07 3.85
832 884 1.488812 TGCCAACTGTGTGTTAGGACT 59.511 47.619 0.00 0.00 37.07 3.85
833 885 2.092646 TGCCAACTGTGTGTTAGGACTT 60.093 45.455 0.00 0.00 37.07 3.01
834 886 2.290641 GCCAACTGTGTGTTAGGACTTG 59.709 50.000 0.00 0.00 37.07 3.16
835 887 2.878406 CCAACTGTGTGTTAGGACTTGG 59.122 50.000 0.00 0.00 37.07 3.61
881 938 6.039159 GGCTCCTGAAAAATTATCTCTTGAGG 59.961 42.308 0.00 0.00 0.00 3.86
920 978 0.040157 TGACGCTGCAATGCACTTTC 60.040 50.000 2.72 0.88 33.79 2.62
1092 1151 1.028130 TGCGCACTGAAATGAACCAA 58.972 45.000 5.66 0.00 0.00 3.67
1281 1340 1.446272 CCTTGAAGAGGTCGTCGCC 60.446 63.158 0.00 0.00 40.95 5.54
1476 1544 3.965888 AGGAGACTTGCATGGTTCC 57.034 52.632 13.50 13.50 37.44 3.62
1484 1552 3.270877 ACTTGCATGGTTCCTTATCGAC 58.729 45.455 4.44 0.00 0.00 4.20
1510 1578 0.963355 TTGCTTGTTACCGGATGCCC 60.963 55.000 9.46 0.00 0.00 5.36
1597 1680 9.448294 CGTGTAAAACTAGAGATTATGGTAGAC 57.552 37.037 0.00 0.00 0.00 2.59
1599 1682 8.627403 TGTAAAACTAGAGATTATGGTAGACCG 58.373 37.037 0.00 0.00 39.43 4.79
1668 1751 0.875059 CGTGCCTTTTGTCTCCCTTC 59.125 55.000 0.00 0.00 0.00 3.46
1669 1752 1.543429 CGTGCCTTTTGTCTCCCTTCT 60.543 52.381 0.00 0.00 0.00 2.85
1688 1771 2.618241 TCTTGTTGTTGCGCTTCAGAAT 59.382 40.909 9.73 0.00 0.00 2.40
1689 1772 3.812609 TCTTGTTGTTGCGCTTCAGAATA 59.187 39.130 9.73 0.00 0.00 1.75
1749 1833 7.206687 TGAGTTTCAAAGAAATTTTACCGCAT 58.793 30.769 0.00 0.00 0.00 4.73
1808 1892 7.009179 TGGATACATGTTTCTTCTTGACTCT 57.991 36.000 14.76 0.00 46.17 3.24
1910 1998 4.328983 CCTTGTTGTACTAGGTTATGTGCG 59.671 45.833 0.00 0.00 36.55 5.34
1988 2078 3.243704 GCAATGTGGCTTTCCTTTGTGTA 60.244 43.478 0.00 0.00 0.00 2.90
1990 2080 4.853924 ATGTGGCTTTCCTTTGTGTAAG 57.146 40.909 0.00 0.00 0.00 2.34
2018 2108 1.810755 GGTTGTACCTTGCTAGTTGCC 59.189 52.381 0.00 0.00 36.63 4.52
2019 2109 2.500229 GTTGTACCTTGCTAGTTGCCA 58.500 47.619 0.00 0.00 42.00 4.92
2020 2110 2.882137 GTTGTACCTTGCTAGTTGCCAA 59.118 45.455 0.00 0.00 42.00 4.52
2021 2111 3.433306 TGTACCTTGCTAGTTGCCAAT 57.567 42.857 0.00 0.00 42.00 3.16
2022 2112 4.561500 TGTACCTTGCTAGTTGCCAATA 57.438 40.909 0.00 0.00 42.00 1.90
2023 2113 5.110814 TGTACCTTGCTAGTTGCCAATAT 57.889 39.130 0.00 0.00 42.00 1.28
2024 2114 4.881273 TGTACCTTGCTAGTTGCCAATATG 59.119 41.667 0.00 0.00 42.00 1.78
2025 2115 2.689983 ACCTTGCTAGTTGCCAATATGC 59.310 45.455 0.00 0.00 42.00 3.14
2026 2116 2.954318 CCTTGCTAGTTGCCAATATGCT 59.046 45.455 0.00 0.00 42.00 3.79
2027 2117 3.382546 CCTTGCTAGTTGCCAATATGCTT 59.617 43.478 0.00 0.00 42.00 3.91
2028 2118 4.142093 CCTTGCTAGTTGCCAATATGCTTT 60.142 41.667 0.00 0.00 42.00 3.51
2029 2119 5.404466 TTGCTAGTTGCCAATATGCTTTT 57.596 34.783 0.00 0.00 42.00 2.27
2030 2120 4.746729 TGCTAGTTGCCAATATGCTTTTG 58.253 39.130 0.00 0.00 42.00 2.44
2031 2121 4.114794 GCTAGTTGCCAATATGCTTTTGG 58.885 43.478 8.09 8.09 45.30 3.28
2039 2129 5.796424 CCAATATGCTTTTGGCTAGGAAT 57.204 39.130 0.00 0.00 42.39 3.01
2040 2130 6.899393 CCAATATGCTTTTGGCTAGGAATA 57.101 37.500 0.00 0.00 42.39 1.75
2041 2131 6.917533 CCAATATGCTTTTGGCTAGGAATAG 58.082 40.000 0.00 0.00 42.39 1.73
2042 2132 6.491403 CCAATATGCTTTTGGCTAGGAATAGT 59.509 38.462 0.00 0.00 42.39 2.12
2043 2133 7.014615 CCAATATGCTTTTGGCTAGGAATAGTT 59.985 37.037 0.00 0.00 42.39 2.24
2044 2134 8.416329 CAATATGCTTTTGGCTAGGAATAGTTT 58.584 33.333 0.00 0.00 42.39 2.66
2045 2135 5.643379 TGCTTTTGGCTAGGAATAGTTTG 57.357 39.130 0.00 0.00 42.39 2.93
2046 2136 4.082245 TGCTTTTGGCTAGGAATAGTTTGC 60.082 41.667 0.00 0.00 42.39 3.68
2047 2137 4.158579 GCTTTTGGCTAGGAATAGTTTGCT 59.841 41.667 0.00 0.00 37.31 3.91
2048 2138 5.357032 GCTTTTGGCTAGGAATAGTTTGCTA 59.643 40.000 0.00 0.00 34.97 3.49
2049 2139 6.039829 GCTTTTGGCTAGGAATAGTTTGCTAT 59.960 38.462 0.00 0.00 35.52 2.97
2050 2140 7.416777 GCTTTTGGCTAGGAATAGTTTGCTATT 60.417 37.037 0.09 0.09 42.41 1.73
2051 2141 9.120538 CTTTTGGCTAGGAATAGTTTGCTATTA 57.879 33.333 0.00 0.00 45.16 0.98
2052 2142 9.640952 TTTTGGCTAGGAATAGTTTGCTATTAT 57.359 29.630 0.00 0.00 45.16 1.28
2053 2143 8.621532 TTGGCTAGGAATAGTTTGCTATTATG 57.378 34.615 0.00 0.00 45.16 1.90
2054 2144 6.655003 TGGCTAGGAATAGTTTGCTATTATGC 59.345 38.462 0.00 3.62 45.16 3.14
2055 2145 6.655003 GGCTAGGAATAGTTTGCTATTATGCA 59.345 38.462 0.00 0.00 45.16 3.96
2069 2159 7.312154 TGCTATTATGCAAAACTACTTTGTGG 58.688 34.615 0.00 0.00 45.37 4.17
2070 2160 6.751888 GCTATTATGCAAAACTACTTTGTGGG 59.248 38.462 0.00 0.00 45.37 4.61
2071 2161 6.909550 ATTATGCAAAACTACTTTGTGGGA 57.090 33.333 0.00 0.00 45.37 4.37
2072 2162 6.909550 TTATGCAAAACTACTTTGTGGGAT 57.090 33.333 0.00 0.00 45.37 3.85
2073 2163 4.846779 TGCAAAACTACTTTGTGGGATC 57.153 40.909 0.00 0.00 45.37 3.36
2074 2164 4.469657 TGCAAAACTACTTTGTGGGATCT 58.530 39.130 0.00 0.00 45.37 2.75
2075 2165 4.278170 TGCAAAACTACTTTGTGGGATCTG 59.722 41.667 0.00 0.00 45.37 2.90
2076 2166 4.798574 CAAAACTACTTTGTGGGATCTGC 58.201 43.478 0.00 0.00 39.75 4.26
2077 2167 3.788227 AACTACTTTGTGGGATCTGCA 57.212 42.857 0.00 0.00 0.00 4.41
2078 2168 3.340814 ACTACTTTGTGGGATCTGCAG 57.659 47.619 7.63 7.63 0.00 4.41
2079 2169 2.639839 ACTACTTTGTGGGATCTGCAGT 59.360 45.455 14.67 0.42 0.00 4.40
2080 2170 2.664402 ACTTTGTGGGATCTGCAGTT 57.336 45.000 14.67 5.03 0.00 3.16
2081 2171 2.508526 ACTTTGTGGGATCTGCAGTTC 58.491 47.619 14.67 14.97 0.00 3.01
2082 2172 2.107204 ACTTTGTGGGATCTGCAGTTCT 59.893 45.455 21.15 5.45 0.00 3.01
2083 2173 3.327757 ACTTTGTGGGATCTGCAGTTCTA 59.672 43.478 21.15 10.40 0.00 2.10
2084 2174 3.334583 TTGTGGGATCTGCAGTTCTAC 57.665 47.619 21.15 19.32 0.00 2.59
2085 2175 1.204704 TGTGGGATCTGCAGTTCTACG 59.795 52.381 21.15 0.00 0.00 3.51
2086 2176 1.476891 GTGGGATCTGCAGTTCTACGA 59.523 52.381 21.15 3.77 0.00 3.43
2087 2177 1.476891 TGGGATCTGCAGTTCTACGAC 59.523 52.381 21.15 7.00 0.00 4.34
2088 2178 1.534175 GGGATCTGCAGTTCTACGACG 60.534 57.143 21.15 0.00 0.00 5.12
2089 2179 1.534175 GGATCTGCAGTTCTACGACGG 60.534 57.143 21.15 0.00 0.00 4.79
2090 2180 0.456221 ATCTGCAGTTCTACGACGGG 59.544 55.000 14.67 0.00 0.00 5.28
2091 2181 0.607217 TCTGCAGTTCTACGACGGGA 60.607 55.000 14.67 0.00 0.00 5.14
2092 2182 0.242825 CTGCAGTTCTACGACGGGAA 59.757 55.000 5.25 0.38 0.00 3.97
2093 2183 0.675083 TGCAGTTCTACGACGGGAAA 59.325 50.000 0.00 0.00 0.00 3.13
2094 2184 1.336517 TGCAGTTCTACGACGGGAAAG 60.337 52.381 0.00 1.78 0.00 2.62
2095 2185 1.992170 CAGTTCTACGACGGGAAAGG 58.008 55.000 0.00 0.00 0.00 3.11
2096 2186 0.893447 AGTTCTACGACGGGAAAGGG 59.107 55.000 0.00 0.00 0.00 3.95
2097 2187 0.605083 GTTCTACGACGGGAAAGGGT 59.395 55.000 0.00 0.00 0.00 4.34
2098 2188 1.001293 GTTCTACGACGGGAAAGGGTT 59.999 52.381 0.00 0.00 0.00 4.11
2099 2189 1.341080 TCTACGACGGGAAAGGGTTT 58.659 50.000 0.00 0.00 0.00 3.27
2100 2190 1.001181 TCTACGACGGGAAAGGGTTTG 59.999 52.381 0.00 0.00 0.00 2.93
2101 2191 1.001181 CTACGACGGGAAAGGGTTTGA 59.999 52.381 0.00 0.00 0.00 2.69
2102 2192 0.399075 ACGACGGGAAAGGGTTTGAT 59.601 50.000 0.00 0.00 0.00 2.57
2103 2193 0.802494 CGACGGGAAAGGGTTTGATG 59.198 55.000 0.00 0.00 0.00 3.07
2104 2194 1.609580 CGACGGGAAAGGGTTTGATGA 60.610 52.381 0.00 0.00 0.00 2.92
2105 2195 1.810755 GACGGGAAAGGGTTTGATGAC 59.189 52.381 0.00 0.00 0.00 3.06
2106 2196 1.144093 ACGGGAAAGGGTTTGATGACA 59.856 47.619 0.00 0.00 0.00 3.58
2107 2197 2.225017 ACGGGAAAGGGTTTGATGACAT 60.225 45.455 0.00 0.00 0.00 3.06
2108 2198 2.164219 CGGGAAAGGGTTTGATGACATG 59.836 50.000 0.00 0.00 0.00 3.21
2109 2199 3.165071 GGGAAAGGGTTTGATGACATGT 58.835 45.455 0.00 0.00 0.00 3.21
2110 2200 3.193479 GGGAAAGGGTTTGATGACATGTC 59.807 47.826 19.27 19.27 0.00 3.06
2111 2201 3.193479 GGAAAGGGTTTGATGACATGTCC 59.807 47.826 22.85 9.16 0.00 4.02
2112 2202 3.524095 AAGGGTTTGATGACATGTCCA 57.476 42.857 22.85 11.76 0.00 4.02
2113 2203 3.524095 AGGGTTTGATGACATGTCCAA 57.476 42.857 22.85 16.85 0.00 3.53
2114 2204 3.424703 AGGGTTTGATGACATGTCCAAG 58.575 45.455 22.85 0.00 0.00 3.61
2115 2205 3.074390 AGGGTTTGATGACATGTCCAAGA 59.926 43.478 22.85 4.66 0.00 3.02
2116 2206 3.826157 GGGTTTGATGACATGTCCAAGAA 59.174 43.478 22.85 10.02 0.00 2.52
2117 2207 4.280677 GGGTTTGATGACATGTCCAAGAAA 59.719 41.667 22.85 12.94 0.00 2.52
2118 2208 5.221422 GGGTTTGATGACATGTCCAAGAAAA 60.221 40.000 22.85 12.79 0.00 2.29
2119 2209 6.458210 GGTTTGATGACATGTCCAAGAAAAT 58.542 36.000 22.85 7.80 0.00 1.82
2120 2210 6.587608 GGTTTGATGACATGTCCAAGAAAATC 59.412 38.462 22.85 16.22 0.00 2.17
2121 2211 5.902613 TGATGACATGTCCAAGAAAATCC 57.097 39.130 22.85 3.75 0.00 3.01
2122 2212 5.573219 TGATGACATGTCCAAGAAAATCCT 58.427 37.500 22.85 0.00 0.00 3.24
2123 2213 6.012113 TGATGACATGTCCAAGAAAATCCTT 58.988 36.000 22.85 0.00 0.00 3.36
2124 2214 5.710513 TGACATGTCCAAGAAAATCCTTG 57.289 39.130 22.85 0.00 42.28 3.61
2125 2215 5.384336 TGACATGTCCAAGAAAATCCTTGA 58.616 37.500 22.85 0.00 44.66 3.02
2126 2216 5.241506 TGACATGTCCAAGAAAATCCTTGAC 59.758 40.000 22.85 3.31 44.66 3.18
2127 2217 5.139727 ACATGTCCAAGAAAATCCTTGACA 58.860 37.500 0.00 7.85 44.66 3.58
2128 2218 5.598005 ACATGTCCAAGAAAATCCTTGACAA 59.402 36.000 0.00 0.00 44.66 3.18
2129 2219 6.098124 ACATGTCCAAGAAAATCCTTGACAAA 59.902 34.615 0.00 0.00 44.66 2.83
2130 2220 6.729690 TGTCCAAGAAAATCCTTGACAAAT 57.270 33.333 5.32 0.00 44.66 2.32
2131 2221 6.748132 TGTCCAAGAAAATCCTTGACAAATC 58.252 36.000 5.32 0.00 44.66 2.17
2132 2222 5.858581 GTCCAAGAAAATCCTTGACAAATCG 59.141 40.000 5.32 0.00 44.66 3.34
2133 2223 5.534654 TCCAAGAAAATCCTTGACAAATCGT 59.465 36.000 5.32 0.00 44.66 3.73
2134 2224 6.040391 TCCAAGAAAATCCTTGACAAATCGTT 59.960 34.615 5.32 0.00 44.66 3.85
2135 2225 6.144402 CCAAGAAAATCCTTGACAAATCGTTG 59.856 38.462 5.32 0.00 44.66 4.10
2136 2226 6.633500 AGAAAATCCTTGACAAATCGTTGA 57.367 33.333 0.00 0.00 38.20 3.18
2137 2227 7.038154 AGAAAATCCTTGACAAATCGTTGAA 57.962 32.000 0.00 0.00 38.20 2.69
2138 2228 6.918022 AGAAAATCCTTGACAAATCGTTGAAC 59.082 34.615 0.00 0.00 38.20 3.18
2139 2229 5.766150 AATCCTTGACAAATCGTTGAACA 57.234 34.783 0.00 0.00 38.20 3.18
2140 2230 5.766150 ATCCTTGACAAATCGTTGAACAA 57.234 34.783 0.00 0.00 38.20 2.83
2141 2231 5.568685 TCCTTGACAAATCGTTGAACAAA 57.431 34.783 0.00 0.00 38.20 2.83
2142 2232 5.955488 TCCTTGACAAATCGTTGAACAAAA 58.045 33.333 0.00 0.00 38.20 2.44
2143 2233 5.802956 TCCTTGACAAATCGTTGAACAAAAC 59.197 36.000 0.00 0.00 38.20 2.43
2144 2234 5.574830 CCTTGACAAATCGTTGAACAAAACA 59.425 36.000 0.00 0.00 38.20 2.83
2145 2235 6.382821 TTGACAAATCGTTGAACAAAACAC 57.617 33.333 0.00 0.00 38.20 3.32
2146 2236 5.461526 TGACAAATCGTTGAACAAAACACA 58.538 33.333 0.00 0.00 38.20 3.72
2147 2237 5.920840 TGACAAATCGTTGAACAAAACACAA 59.079 32.000 0.00 0.00 38.20 3.33
2148 2238 6.088749 TGACAAATCGTTGAACAAAACACAAG 59.911 34.615 0.00 0.00 38.20 3.16
2149 2239 6.153067 ACAAATCGTTGAACAAAACACAAGA 58.847 32.000 0.00 0.00 38.20 3.02
2150 2240 6.642950 ACAAATCGTTGAACAAAACACAAGAA 59.357 30.769 0.00 0.00 38.20 2.52
2151 2241 6.869421 AATCGTTGAACAAAACACAAGAAG 57.131 33.333 0.00 0.00 0.00 2.85
2152 2242 5.365403 TCGTTGAACAAAACACAAGAAGT 57.635 34.783 0.00 0.00 0.00 3.01
2153 2243 5.764131 TCGTTGAACAAAACACAAGAAGTT 58.236 33.333 0.00 0.00 0.00 2.66
2154 2244 6.210078 TCGTTGAACAAAACACAAGAAGTTT 58.790 32.000 0.00 0.00 40.66 2.66
2155 2245 6.143118 TCGTTGAACAAAACACAAGAAGTTTG 59.857 34.615 0.00 0.00 39.02 2.93
2156 2246 6.143118 CGTTGAACAAAACACAAGAAGTTTGA 59.857 34.615 0.00 0.00 39.02 2.69
2157 2247 7.280769 GTTGAACAAAACACAAGAAGTTTGAC 58.719 34.615 2.25 0.00 39.02 3.18
2158 2248 6.744112 TGAACAAAACACAAGAAGTTTGACT 58.256 32.000 2.25 0.00 39.02 3.41
2159 2249 6.640499 TGAACAAAACACAAGAAGTTTGACTG 59.360 34.615 2.25 0.00 39.02 3.51
2160 2250 6.325919 ACAAAACACAAGAAGTTTGACTGA 57.674 33.333 2.25 0.00 39.02 3.41
2161 2251 6.149633 ACAAAACACAAGAAGTTTGACTGAC 58.850 36.000 2.25 0.00 39.02 3.51
2162 2252 6.016276 ACAAAACACAAGAAGTTTGACTGACT 60.016 34.615 2.25 0.00 39.02 3.41
2163 2253 5.803020 AACACAAGAAGTTTGACTGACTC 57.197 39.130 0.00 0.00 0.00 3.36
2164 2254 5.091261 ACACAAGAAGTTTGACTGACTCT 57.909 39.130 0.00 0.00 0.00 3.24
2165 2255 4.872691 ACACAAGAAGTTTGACTGACTCTG 59.127 41.667 0.00 0.00 0.00 3.35
2166 2256 5.111989 CACAAGAAGTTTGACTGACTCTGA 58.888 41.667 0.00 0.00 0.00 3.27
2167 2257 5.757320 CACAAGAAGTTTGACTGACTCTGAT 59.243 40.000 0.00 0.00 0.00 2.90
2168 2258 6.259608 CACAAGAAGTTTGACTGACTCTGATT 59.740 38.462 0.00 0.00 0.00 2.57
2169 2259 6.481644 ACAAGAAGTTTGACTGACTCTGATTC 59.518 38.462 0.00 0.00 0.00 2.52
2170 2260 5.546526 AGAAGTTTGACTGACTCTGATTCC 58.453 41.667 0.00 0.00 0.00 3.01
2171 2261 5.306678 AGAAGTTTGACTGACTCTGATTCCT 59.693 40.000 0.00 0.00 0.00 3.36
2172 2262 5.146010 AGTTTGACTGACTCTGATTCCTC 57.854 43.478 0.00 0.00 0.00 3.71
2173 2263 4.837860 AGTTTGACTGACTCTGATTCCTCT 59.162 41.667 0.00 0.00 0.00 3.69
2174 2264 5.047377 AGTTTGACTGACTCTGATTCCTCTC 60.047 44.000 0.00 0.00 0.00 3.20
2175 2265 4.039603 TGACTGACTCTGATTCCTCTCA 57.960 45.455 0.00 0.00 0.00 3.27
2176 2266 4.608269 TGACTGACTCTGATTCCTCTCAT 58.392 43.478 0.00 0.00 0.00 2.90
2177 2267 4.401837 TGACTGACTCTGATTCCTCTCATG 59.598 45.833 0.00 0.00 0.00 3.07
2178 2268 3.705579 ACTGACTCTGATTCCTCTCATGG 59.294 47.826 0.00 0.00 0.00 3.66
2179 2269 3.705579 CTGACTCTGATTCCTCTCATGGT 59.294 47.826 0.00 0.00 0.00 3.55
2180 2270 3.450096 TGACTCTGATTCCTCTCATGGTG 59.550 47.826 0.00 0.00 0.00 4.17
2181 2271 3.703556 GACTCTGATTCCTCTCATGGTGA 59.296 47.826 0.00 0.00 0.00 4.02
2182 2272 3.705579 ACTCTGATTCCTCTCATGGTGAG 59.294 47.826 8.91 8.91 45.59 3.51
2190 2280 3.300852 CTCTCATGGTGAGGATGATCG 57.699 52.381 7.08 0.00 44.39 3.69
2191 2281 2.889678 CTCTCATGGTGAGGATGATCGA 59.110 50.000 7.08 0.00 44.39 3.59
2192 2282 3.504375 TCTCATGGTGAGGATGATCGAT 58.496 45.455 0.00 0.00 44.39 3.59
2193 2283 3.509184 TCTCATGGTGAGGATGATCGATC 59.491 47.826 18.72 18.72 44.39 3.69
2194 2284 3.233507 TCATGGTGAGGATGATCGATCA 58.766 45.455 29.09 29.09 41.70 2.92
2195 2285 3.257624 TCATGGTGAGGATGATCGATCAG 59.742 47.826 30.11 14.41 40.64 2.90
2196 2286 2.670939 TGGTGAGGATGATCGATCAGT 58.329 47.619 30.11 18.57 40.64 3.41
2197 2287 2.363359 TGGTGAGGATGATCGATCAGTG 59.637 50.000 30.11 0.00 40.64 3.66
2198 2288 2.288702 GGTGAGGATGATCGATCAGTGG 60.289 54.545 30.11 0.00 40.64 4.00
2199 2289 2.625314 GTGAGGATGATCGATCAGTGGA 59.375 50.000 30.11 12.39 40.64 4.02
2200 2290 2.889678 TGAGGATGATCGATCAGTGGAG 59.110 50.000 30.11 0.00 40.64 3.86
2201 2291 2.230992 GAGGATGATCGATCAGTGGAGG 59.769 54.545 30.11 0.00 40.64 4.30
2202 2292 1.274728 GGATGATCGATCAGTGGAGGG 59.725 57.143 30.11 0.00 40.64 4.30
2203 2293 1.274728 GATGATCGATCAGTGGAGGGG 59.725 57.143 30.11 0.00 40.64 4.79
2204 2294 0.760567 TGATCGATCAGTGGAGGGGG 60.761 60.000 23.99 0.00 32.11 5.40
2205 2295 2.105806 GATCGATCAGTGGAGGGGGC 62.106 65.000 20.52 0.00 0.00 5.80
2206 2296 2.611964 ATCGATCAGTGGAGGGGGCT 62.612 60.000 0.00 0.00 0.00 5.19
2207 2297 1.457643 CGATCAGTGGAGGGGGCTA 60.458 63.158 0.00 0.00 0.00 3.93
2208 2298 1.048724 CGATCAGTGGAGGGGGCTAA 61.049 60.000 0.00 0.00 0.00 3.09
2209 2299 0.761802 GATCAGTGGAGGGGGCTAAG 59.238 60.000 0.00 0.00 0.00 2.18
2210 2300 0.695803 ATCAGTGGAGGGGGCTAAGG 60.696 60.000 0.00 0.00 0.00 2.69
2211 2301 2.042930 AGTGGAGGGGGCTAAGGG 59.957 66.667 0.00 0.00 0.00 3.95
2212 2302 3.810188 GTGGAGGGGGCTAAGGGC 61.810 72.222 0.00 0.00 40.90 5.19
2213 2303 4.363056 TGGAGGGGGCTAAGGGCA 62.363 66.667 0.00 0.00 44.01 5.36
2214 2304 2.778717 GGAGGGGGCTAAGGGCAT 60.779 66.667 0.00 0.00 44.01 4.40
2215 2305 2.517919 GAGGGGGCTAAGGGCATG 59.482 66.667 0.00 0.00 44.01 4.06
2216 2306 2.287194 AGGGGGCTAAGGGCATGT 60.287 61.111 0.00 0.00 44.01 3.21
2217 2307 1.005556 AGGGGGCTAAGGGCATGTA 59.994 57.895 0.00 0.00 44.01 2.29
2218 2308 1.150764 GGGGGCTAAGGGCATGTAC 59.849 63.158 0.00 0.00 44.01 2.90
2219 2309 1.641552 GGGGGCTAAGGGCATGTACA 61.642 60.000 0.00 0.00 44.01 2.90
2220 2310 0.257616 GGGGCTAAGGGCATGTACAA 59.742 55.000 0.00 0.00 44.01 2.41
2221 2311 1.133482 GGGGCTAAGGGCATGTACAAT 60.133 52.381 0.00 0.00 44.01 2.71
2222 2312 1.956477 GGGCTAAGGGCATGTACAATG 59.044 52.381 0.00 0.12 44.01 2.82
2223 2313 1.956477 GGCTAAGGGCATGTACAATGG 59.044 52.381 0.00 0.00 44.01 3.16
2224 2314 2.654863 GCTAAGGGCATGTACAATGGT 58.345 47.619 0.00 0.00 41.35 3.55
2225 2315 2.358898 GCTAAGGGCATGTACAATGGTG 59.641 50.000 0.00 0.00 41.35 4.17
2226 2316 1.851304 AAGGGCATGTACAATGGTGG 58.149 50.000 0.00 0.00 0.00 4.61
2227 2317 0.684153 AGGGCATGTACAATGGTGGC 60.684 55.000 11.25 11.25 36.52 5.01
2228 2318 0.969917 GGGCATGTACAATGGTGGCA 60.970 55.000 18.87 0.00 38.72 4.92
2229 2319 1.113788 GGCATGTACAATGGTGGCAT 58.886 50.000 14.01 0.00 37.14 4.40
2230 2320 2.305928 GGCATGTACAATGGTGGCATA 58.694 47.619 14.01 0.00 37.14 3.14
2231 2321 2.892852 GGCATGTACAATGGTGGCATAT 59.107 45.455 14.01 0.00 37.14 1.78
2232 2322 3.305539 GGCATGTACAATGGTGGCATATG 60.306 47.826 14.01 0.00 37.14 1.78
2233 2323 3.305539 GCATGTACAATGGTGGCATATGG 60.306 47.826 0.00 0.00 0.00 2.74
2234 2324 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
2235 2325 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
2236 2326 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
2237 2327 5.312895 TGTACAATGGTGGCATATGGATAC 58.687 41.667 4.56 0.00 0.00 2.24
2268 2358 9.569167 GTTCCATAATAAAAAGTAGTTTGAGGC 57.431 33.333 0.00 0.00 0.00 4.70
2269 2359 8.871629 TCCATAATAAAAAGTAGTTTGAGGCA 57.128 30.769 0.00 0.00 0.00 4.75
2270 2360 9.474313 TCCATAATAAAAAGTAGTTTGAGGCAT 57.526 29.630 0.00 0.00 0.00 4.40
2271 2361 9.520204 CCATAATAAAAAGTAGTTTGAGGCATG 57.480 33.333 0.00 0.00 0.00 4.06
2306 2396 8.732746 TTTTTCTCCCTAATGTAAGCTATCAC 57.267 34.615 0.00 0.00 0.00 3.06
2307 2397 7.676683 TTTCTCCCTAATGTAAGCTATCACT 57.323 36.000 0.00 0.00 0.00 3.41
2308 2398 8.777578 TTTCTCCCTAATGTAAGCTATCACTA 57.222 34.615 0.00 0.00 0.00 2.74
2309 2399 8.410673 TTCTCCCTAATGTAAGCTATCACTAG 57.589 38.462 0.00 0.00 0.00 2.57
2310 2400 7.527796 TCTCCCTAATGTAAGCTATCACTAGT 58.472 38.462 0.00 0.00 0.00 2.57
2311 2401 7.448777 TCTCCCTAATGTAAGCTATCACTAGTG 59.551 40.741 17.17 17.17 0.00 2.74
2312 2402 6.493802 TCCCTAATGTAAGCTATCACTAGTGG 59.506 42.308 22.48 8.08 0.00 4.00
2313 2403 6.493802 CCCTAATGTAAGCTATCACTAGTGGA 59.506 42.308 22.48 10.25 0.00 4.02
2314 2404 7.371936 CCTAATGTAAGCTATCACTAGTGGAC 58.628 42.308 22.48 9.67 0.00 4.02
2315 2405 5.793030 ATGTAAGCTATCACTAGTGGACC 57.207 43.478 22.48 8.94 0.00 4.46
2316 2406 4.868268 TGTAAGCTATCACTAGTGGACCT 58.132 43.478 22.48 10.93 0.00 3.85
2317 2407 5.269991 TGTAAGCTATCACTAGTGGACCTT 58.730 41.667 22.48 19.06 0.00 3.50
2318 2408 4.744795 AAGCTATCACTAGTGGACCTTG 57.255 45.455 22.48 8.52 0.00 3.61
2319 2409 3.714144 AGCTATCACTAGTGGACCTTGT 58.286 45.455 22.48 3.70 0.00 3.16
2320 2410 4.097418 AGCTATCACTAGTGGACCTTGTT 58.903 43.478 22.48 3.47 0.00 2.83
2321 2411 5.269991 AGCTATCACTAGTGGACCTTGTTA 58.730 41.667 22.48 0.13 0.00 2.41
2322 2412 5.720041 AGCTATCACTAGTGGACCTTGTTAA 59.280 40.000 22.48 0.00 0.00 2.01
2323 2413 6.043411 GCTATCACTAGTGGACCTTGTTAAG 58.957 44.000 22.48 6.71 0.00 1.85
2324 2414 6.127423 GCTATCACTAGTGGACCTTGTTAAGA 60.127 42.308 22.48 0.00 0.00 2.10
2325 2415 6.681729 ATCACTAGTGGACCTTGTTAAGAA 57.318 37.500 22.48 0.00 0.00 2.52
2326 2416 6.488769 TCACTAGTGGACCTTGTTAAGAAA 57.511 37.500 22.48 0.00 0.00 2.52
2327 2417 7.074653 TCACTAGTGGACCTTGTTAAGAAAT 57.925 36.000 22.48 0.00 0.00 2.17
2328 2418 8.197592 TCACTAGTGGACCTTGTTAAGAAATA 57.802 34.615 22.48 0.00 0.00 1.40
2329 2419 8.311836 TCACTAGTGGACCTTGTTAAGAAATAG 58.688 37.037 22.48 0.00 0.00 1.73
2330 2420 8.311836 CACTAGTGGACCTTGTTAAGAAATAGA 58.688 37.037 15.49 0.00 0.00 1.98
2331 2421 8.877195 ACTAGTGGACCTTGTTAAGAAATAGAA 58.123 33.333 0.00 0.00 0.00 2.10
2332 2422 9.720769 CTAGTGGACCTTGTTAAGAAATAGAAA 57.279 33.333 0.00 0.00 0.00 2.52
2333 2423 8.990163 AGTGGACCTTGTTAAGAAATAGAAAA 57.010 30.769 0.00 0.00 0.00 2.29
2334 2424 9.588096 AGTGGACCTTGTTAAGAAATAGAAAAT 57.412 29.630 0.00 0.00 0.00 1.82
2375 2465 9.950496 ACATGTATCTCTACTTTTCACTTCAAT 57.050 29.630 0.00 0.00 0.00 2.57
2382 2472 9.613428 TCTCTACTTTTCACTTCAATCTTTTCA 57.387 29.630 0.00 0.00 0.00 2.69
2387 2477 9.710900 ACTTTTCACTTCAATCTTTTCAACTTT 57.289 25.926 0.00 0.00 0.00 2.66
2390 2480 9.703892 TTTCACTTCAATCTTTTCAACTTTTGA 57.296 25.926 0.00 0.00 38.04 2.69
2391 2481 8.687824 TCACTTCAATCTTTTCAACTTTTGAC 57.312 30.769 0.00 0.00 39.87 3.18
2392 2482 8.303156 TCACTTCAATCTTTTCAACTTTTGACA 58.697 29.630 0.00 0.00 39.87 3.58
2393 2483 8.375465 CACTTCAATCTTTTCAACTTTTGACAC 58.625 33.333 0.00 0.00 39.87 3.67
2394 2484 7.545615 ACTTCAATCTTTTCAACTTTTGACACC 59.454 33.333 0.00 0.00 39.87 4.16
2395 2485 6.033341 TCAATCTTTTCAACTTTTGACACCG 58.967 36.000 0.00 0.00 39.87 4.94
2396 2486 4.364415 TCTTTTCAACTTTTGACACCGG 57.636 40.909 0.00 0.00 39.87 5.28
2397 2487 3.129638 TCTTTTCAACTTTTGACACCGGG 59.870 43.478 6.32 0.00 39.87 5.73
2398 2488 0.741915 TTCAACTTTTGACACCGGGC 59.258 50.000 6.32 0.00 39.87 6.13
2399 2489 0.394488 TCAACTTTTGACACCGGGCA 60.394 50.000 6.32 0.00 34.08 5.36
2400 2490 0.457851 CAACTTTTGACACCGGGCAA 59.542 50.000 6.32 4.28 0.00 4.52
2401 2491 0.744281 AACTTTTGACACCGGGCAAG 59.256 50.000 6.32 0.63 0.00 4.01
2402 2492 0.106918 ACTTTTGACACCGGGCAAGA 60.107 50.000 6.32 1.66 0.00 3.02
2403 2493 0.310854 CTTTTGACACCGGGCAAGAC 59.689 55.000 6.32 0.00 0.00 3.01
2404 2494 0.106918 TTTTGACACCGGGCAAGACT 60.107 50.000 6.32 0.00 0.00 3.24
2405 2495 0.106918 TTTGACACCGGGCAAGACTT 60.107 50.000 6.32 0.00 0.00 3.01
2406 2496 0.106918 TTGACACCGGGCAAGACTTT 60.107 50.000 6.32 0.00 0.00 2.66
2407 2497 0.106918 TGACACCGGGCAAGACTTTT 60.107 50.000 6.32 0.00 0.00 2.27
2408 2498 0.591659 GACACCGGGCAAGACTTTTC 59.408 55.000 6.32 0.00 0.00 2.29
2409 2499 0.182775 ACACCGGGCAAGACTTTTCT 59.817 50.000 6.32 0.00 0.00 2.52
2410 2500 0.875059 CACCGGGCAAGACTTTTCTC 59.125 55.000 6.32 0.00 0.00 2.87
2411 2501 0.765510 ACCGGGCAAGACTTTTCTCT 59.234 50.000 6.32 0.00 0.00 3.10
2412 2502 1.270893 ACCGGGCAAGACTTTTCTCTC 60.271 52.381 6.32 0.00 0.00 3.20
2413 2503 1.443802 CGGGCAAGACTTTTCTCTCC 58.556 55.000 0.00 0.00 0.00 3.71
2414 2504 1.270839 CGGGCAAGACTTTTCTCTCCA 60.271 52.381 0.00 0.00 0.00 3.86
2415 2505 2.810400 CGGGCAAGACTTTTCTCTCCAA 60.810 50.000 0.00 0.00 0.00 3.53
2416 2506 2.816672 GGGCAAGACTTTTCTCTCCAAG 59.183 50.000 0.00 0.00 0.00 3.61
2417 2507 2.227626 GGCAAGACTTTTCTCTCCAAGC 59.772 50.000 0.00 0.00 0.00 4.01
2418 2508 2.880890 GCAAGACTTTTCTCTCCAAGCA 59.119 45.455 0.00 0.00 0.00 3.91
2419 2509 3.304324 GCAAGACTTTTCTCTCCAAGCAC 60.304 47.826 0.00 0.00 0.00 4.40
2420 2510 3.133141 AGACTTTTCTCTCCAAGCACC 57.867 47.619 0.00 0.00 0.00 5.01
2421 2511 2.155279 GACTTTTCTCTCCAAGCACCC 58.845 52.381 0.00 0.00 0.00 4.61
2422 2512 1.160137 CTTTTCTCTCCAAGCACCCG 58.840 55.000 0.00 0.00 0.00 5.28
2423 2513 0.889186 TTTTCTCTCCAAGCACCCGC 60.889 55.000 0.00 0.00 38.99 6.13
2424 2514 2.748058 TTTCTCTCCAAGCACCCGCC 62.748 60.000 0.00 0.00 39.83 6.13
2425 2515 3.710722 CTCTCCAAGCACCCGCCT 61.711 66.667 0.00 0.00 39.83 5.52
2426 2516 3.672295 CTCTCCAAGCACCCGCCTC 62.672 68.421 0.00 0.00 39.83 4.70
2427 2517 4.785453 CTCCAAGCACCCGCCTCC 62.785 72.222 0.00 0.00 39.83 4.30
2434 2524 3.058160 CACCCGCCTCCTGCAAAG 61.058 66.667 0.00 0.00 41.33 2.77
2435 2525 4.351054 ACCCGCCTCCTGCAAAGG 62.351 66.667 9.93 9.93 41.33 3.11
2436 2526 4.033776 CCCGCCTCCTGCAAAGGA 62.034 66.667 17.05 6.74 41.33 3.36
2437 2527 2.273449 CCGCCTCCTGCAAAGGAT 59.727 61.111 17.05 0.00 41.33 3.24
2438 2528 1.821332 CCGCCTCCTGCAAAGGATC 60.821 63.158 17.05 2.53 41.33 3.36
2439 2529 1.821332 CGCCTCCTGCAAAGGATCC 60.821 63.158 17.05 2.48 41.33 3.36
2440 2530 1.454663 GCCTCCTGCAAAGGATCCC 60.455 63.158 17.05 0.00 40.77 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.083293 GGGGATATGGACGAGAGAGTAC 58.917 54.545 0.00 0.00 0.00 2.73
1 2 2.041350 GGGGGATATGGACGAGAGAGTA 59.959 54.545 0.00 0.00 0.00 2.59
2 3 1.203075 GGGGGATATGGACGAGAGAGT 60.203 57.143 0.00 0.00 0.00 3.24
20 21 3.522731 CGCGGTCAGAGAGAGGGG 61.523 72.222 0.00 0.00 0.00 4.79
55 56 3.689002 GAGGGGAAGGAAGCAGCGG 62.689 68.421 0.00 0.00 0.00 5.52
177 178 1.499870 GACTAAGGGGAGAGAGGCCTA 59.500 57.143 4.42 0.00 0.00 3.93
188 189 1.691434 GCATCTGAGAGGACTAAGGGG 59.309 57.143 0.00 0.00 0.00 4.79
189 190 1.339610 CGCATCTGAGAGGACTAAGGG 59.660 57.143 0.00 0.00 0.00 3.95
290 291 0.976641 CCCCAAGCGCTAGGATCATA 59.023 55.000 24.25 0.00 0.00 2.15
333 334 1.333619 CGCCCCAATTCGTCTATTTGG 59.666 52.381 0.00 0.00 38.03 3.28
334 335 1.268539 GCGCCCCAATTCGTCTATTTG 60.269 52.381 0.00 0.00 0.00 2.32
371 396 0.318441 CCAGACACCTTGAGCTTCGA 59.682 55.000 0.00 0.00 0.00 3.71
419 444 9.423061 GCACAATAAATTATGAGAAAACCTGTT 57.577 29.630 0.00 0.00 0.00 3.16
449 474 0.882042 CTGCTGTTCTGCGGTTCTGT 60.882 55.000 0.00 0.00 34.82 3.41
456 481 5.725110 ATAATTACTTCTGCTGTTCTGCG 57.275 39.130 0.00 0.00 35.36 5.18
487 512 5.457686 AGCTATTTTGGGCTATTTCATCCA 58.542 37.500 0.00 0.00 37.00 3.41
488 513 6.151817 CCTAGCTATTTTGGGCTATTTCATCC 59.848 42.308 0.00 0.00 39.79 3.51
523 550 9.453572 AGTTTGCTATCAATCTGATTCAACTAA 57.546 29.630 0.00 0.00 38.26 2.24
544 571 7.156876 TGCCCTGAATAAGTTTGATAGTTTG 57.843 36.000 0.00 0.00 0.00 2.93
545 572 6.127619 GCTGCCCTGAATAAGTTTGATAGTTT 60.128 38.462 0.00 0.00 0.00 2.66
546 573 5.358160 GCTGCCCTGAATAAGTTTGATAGTT 59.642 40.000 0.00 0.00 0.00 2.24
547 574 4.884164 GCTGCCCTGAATAAGTTTGATAGT 59.116 41.667 0.00 0.00 0.00 2.12
548 575 4.883585 TGCTGCCCTGAATAAGTTTGATAG 59.116 41.667 0.00 0.00 0.00 2.08
549 576 4.854173 TGCTGCCCTGAATAAGTTTGATA 58.146 39.130 0.00 0.00 0.00 2.15
550 577 3.700538 TGCTGCCCTGAATAAGTTTGAT 58.299 40.909 0.00 0.00 0.00 2.57
560 599 2.093890 CATACACAATGCTGCCCTGAA 58.906 47.619 0.00 0.00 0.00 3.02
670 717 2.825205 ACTGAAGCAAACAACCAATGC 58.175 42.857 0.00 0.00 40.34 3.56
742 792 5.405935 AAGAAAATTACCAAGGGCATCAC 57.594 39.130 0.00 0.00 0.00 3.06
787 837 8.393366 CAATAATCACCATGACTTAACACTCAG 58.607 37.037 0.00 0.00 0.00 3.35
833 885 9.487442 AGCCAAAGAAAATAAATAATAGTCCCA 57.513 29.630 0.00 0.00 0.00 4.37
834 886 9.967346 GAGCCAAAGAAAATAAATAATAGTCCC 57.033 33.333 0.00 0.00 0.00 4.46
835 887 9.967346 GGAGCCAAAGAAAATAAATAATAGTCC 57.033 33.333 0.00 0.00 0.00 3.85
857 914 6.459435 GCCTCAAGAGATAATTTTTCAGGAGC 60.459 42.308 0.00 0.00 0.00 4.70
858 915 6.600822 TGCCTCAAGAGATAATTTTTCAGGAG 59.399 38.462 0.00 0.00 0.00 3.69
881 938 2.726832 AACTAACCGAGTGAGAGTGC 57.273 50.000 0.00 0.00 38.87 4.40
886 943 1.719780 GCGTCAAACTAACCGAGTGAG 59.280 52.381 0.00 0.00 38.87 3.51
1028 1086 6.116126 ACTACTTGCTCATTTATGGGTTCTC 58.884 40.000 0.00 0.00 0.00 2.87
1092 1151 2.755655 CTCCGTGATCTTGGTGTAGAGT 59.244 50.000 0.00 0.00 0.00 3.24
1281 1340 1.523258 CAGAGCCTCCTTCATGCGG 60.523 63.158 0.00 0.00 0.00 5.69
1471 1539 0.458669 TCTGGCGTCGATAAGGAACC 59.541 55.000 0.00 0.00 0.00 3.62
1476 1544 1.858091 AGCAATCTGGCGTCGATAAG 58.142 50.000 0.00 0.00 39.27 1.73
1484 1552 0.096976 CGGTAACAAGCAATCTGGCG 59.903 55.000 0.00 0.00 39.27 5.69
1510 1578 0.514255 CACACAATCACTGTCAGGCG 59.486 55.000 4.53 0.00 35.47 5.52
1511 1579 1.597742 ACACACAATCACTGTCAGGC 58.402 50.000 4.53 0.00 35.47 4.85
1597 1680 1.271656 AGTTTACGAACAGAGTCCCGG 59.728 52.381 0.00 0.00 38.26 5.73
1599 1682 2.067013 GCAGTTTACGAACAGAGTCCC 58.933 52.381 0.00 0.00 38.26 4.46
1668 1751 2.473530 TTCTGAAGCGCAACAACAAG 57.526 45.000 11.47 0.00 0.00 3.16
1669 1752 4.764679 ATATTCTGAAGCGCAACAACAA 57.235 36.364 11.47 5.37 0.00 2.83
1749 1833 3.797184 GCCAACACGCCTTAACATTTCAA 60.797 43.478 0.00 0.00 0.00 2.69
1805 1889 2.166829 CTGATCGGGTCCTATCCAGAG 58.833 57.143 0.00 0.00 35.42 3.35
1806 1890 1.203063 CCTGATCGGGTCCTATCCAGA 60.203 57.143 12.93 0.00 36.28 3.86
1807 1891 1.261480 CCTGATCGGGTCCTATCCAG 58.739 60.000 12.93 0.00 0.00 3.86
1808 1892 0.832135 GCCTGATCGGGTCCTATCCA 60.832 60.000 21.88 0.00 0.00 3.41
1910 1998 9.722184 AGATAAAGAAAAAGTACACTAGGAACC 57.278 33.333 0.00 0.00 0.00 3.62
1988 2078 4.653801 AGCAAGGTACAACCATTTTTCCTT 59.346 37.500 0.00 0.00 41.95 3.36
1990 2080 4.600692 AGCAAGGTACAACCATTTTTCC 57.399 40.909 0.00 0.00 41.95 3.13
1992 2082 6.512297 CAACTAGCAAGGTACAACCATTTTT 58.488 36.000 0.00 0.00 41.95 1.94
2023 2113 8.288022 ATAGCAAACTATTCCTAGCCAAAAGCA 61.288 37.037 0.00 0.00 39.01 3.91
2024 2114 4.158579 AGCAAACTATTCCTAGCCAAAAGC 59.841 41.667 0.00 0.00 44.25 3.51
2025 2115 5.904362 AGCAAACTATTCCTAGCCAAAAG 57.096 39.130 0.00 0.00 0.00 2.27
2026 2116 7.954666 AATAGCAAACTATTCCTAGCCAAAA 57.045 32.000 0.00 0.00 44.17 2.44
2027 2117 9.066892 CATAATAGCAAACTATTCCTAGCCAAA 57.933 33.333 1.75 0.00 44.17 3.28
2028 2118 7.174946 GCATAATAGCAAACTATTCCTAGCCAA 59.825 37.037 1.75 0.00 44.17 4.52
2029 2119 6.655003 GCATAATAGCAAACTATTCCTAGCCA 59.345 38.462 1.75 0.00 44.17 4.75
2030 2120 6.655003 TGCATAATAGCAAACTATTCCTAGCC 59.345 38.462 1.75 0.00 44.17 3.93
2031 2121 7.672983 TGCATAATAGCAAACTATTCCTAGC 57.327 36.000 1.75 4.06 44.17 3.42
2055 2145 4.469657 TGCAGATCCCACAAAGTAGTTTT 58.530 39.130 0.00 0.00 0.00 2.43
2056 2146 4.074970 CTGCAGATCCCACAAAGTAGTTT 58.925 43.478 8.42 0.00 0.00 2.66
2057 2147 3.073062 ACTGCAGATCCCACAAAGTAGTT 59.927 43.478 23.35 0.00 0.00 2.24
2058 2148 2.639839 ACTGCAGATCCCACAAAGTAGT 59.360 45.455 23.35 0.00 0.00 2.73
2059 2149 3.340814 ACTGCAGATCCCACAAAGTAG 57.659 47.619 23.35 0.00 0.00 2.57
2060 2150 3.327757 AGAACTGCAGATCCCACAAAGTA 59.672 43.478 23.35 0.00 0.00 2.24
2061 2151 2.107204 AGAACTGCAGATCCCACAAAGT 59.893 45.455 23.35 0.00 0.00 2.66
2062 2152 2.787994 AGAACTGCAGATCCCACAAAG 58.212 47.619 23.35 0.00 0.00 2.77
2063 2153 2.957402 AGAACTGCAGATCCCACAAA 57.043 45.000 23.35 0.00 0.00 2.83
2064 2154 2.353704 CGTAGAACTGCAGATCCCACAA 60.354 50.000 23.35 0.00 0.00 3.33
2065 2155 1.204704 CGTAGAACTGCAGATCCCACA 59.795 52.381 23.35 0.78 0.00 4.17
2066 2156 1.476891 TCGTAGAACTGCAGATCCCAC 59.523 52.381 23.35 17.06 0.00 4.61
2067 2157 1.476891 GTCGTAGAACTGCAGATCCCA 59.523 52.381 23.35 6.24 39.69 4.37
2068 2158 1.534175 CGTCGTAGAACTGCAGATCCC 60.534 57.143 23.35 10.76 39.69 3.85
2069 2159 1.534175 CCGTCGTAGAACTGCAGATCC 60.534 57.143 23.35 8.66 39.69 3.36
2070 2160 1.534175 CCCGTCGTAGAACTGCAGATC 60.534 57.143 23.35 19.17 39.69 2.75
2071 2161 0.456221 CCCGTCGTAGAACTGCAGAT 59.544 55.000 23.35 9.01 39.69 2.90
2072 2162 0.607217 TCCCGTCGTAGAACTGCAGA 60.607 55.000 23.35 0.00 39.69 4.26
2073 2163 0.242825 TTCCCGTCGTAGAACTGCAG 59.757 55.000 13.48 13.48 39.69 4.41
2074 2164 0.675083 TTTCCCGTCGTAGAACTGCA 59.325 50.000 0.00 0.00 39.69 4.41
2075 2165 1.347320 CTTTCCCGTCGTAGAACTGC 58.653 55.000 0.00 0.00 39.69 4.40
2076 2166 1.403780 CCCTTTCCCGTCGTAGAACTG 60.404 57.143 0.00 0.00 39.69 3.16
2077 2167 0.893447 CCCTTTCCCGTCGTAGAACT 59.107 55.000 0.00 0.00 39.69 3.01
2078 2168 0.605083 ACCCTTTCCCGTCGTAGAAC 59.395 55.000 0.00 0.00 39.69 3.01
2079 2169 1.341080 AACCCTTTCCCGTCGTAGAA 58.659 50.000 0.00 0.00 39.69 2.10
2080 2170 1.001181 CAAACCCTTTCCCGTCGTAGA 59.999 52.381 0.00 0.00 0.00 2.59
2081 2171 1.001181 TCAAACCCTTTCCCGTCGTAG 59.999 52.381 0.00 0.00 0.00 3.51
2082 2172 1.047002 TCAAACCCTTTCCCGTCGTA 58.953 50.000 0.00 0.00 0.00 3.43
2083 2173 0.399075 ATCAAACCCTTTCCCGTCGT 59.601 50.000 0.00 0.00 0.00 4.34
2084 2174 0.802494 CATCAAACCCTTTCCCGTCG 59.198 55.000 0.00 0.00 0.00 5.12
2085 2175 1.810755 GTCATCAAACCCTTTCCCGTC 59.189 52.381 0.00 0.00 0.00 4.79
2086 2176 1.144093 TGTCATCAAACCCTTTCCCGT 59.856 47.619 0.00 0.00 0.00 5.28
2087 2177 1.904287 TGTCATCAAACCCTTTCCCG 58.096 50.000 0.00 0.00 0.00 5.14
2088 2178 3.165071 ACATGTCATCAAACCCTTTCCC 58.835 45.455 0.00 0.00 0.00 3.97
2089 2179 3.193479 GGACATGTCATCAAACCCTTTCC 59.807 47.826 26.47 1.42 0.00 3.13
2090 2180 3.826157 TGGACATGTCATCAAACCCTTTC 59.174 43.478 26.47 5.65 0.00 2.62
2091 2181 3.843422 TGGACATGTCATCAAACCCTTT 58.157 40.909 26.47 0.00 0.00 3.11
2092 2182 3.524095 TGGACATGTCATCAAACCCTT 57.476 42.857 26.47 0.00 0.00 3.95
2093 2183 3.074390 TCTTGGACATGTCATCAAACCCT 59.926 43.478 26.47 0.00 0.00 4.34
2094 2184 3.420893 TCTTGGACATGTCATCAAACCC 58.579 45.455 26.47 8.50 0.00 4.11
2095 2185 5.452078 TTTCTTGGACATGTCATCAAACC 57.548 39.130 26.47 9.25 0.00 3.27
2096 2186 6.587608 GGATTTTCTTGGACATGTCATCAAAC 59.412 38.462 26.47 9.18 0.00 2.93
2097 2187 6.494491 AGGATTTTCTTGGACATGTCATCAAA 59.506 34.615 26.47 16.44 0.00 2.69
2098 2188 6.012113 AGGATTTTCTTGGACATGTCATCAA 58.988 36.000 26.47 19.71 0.00 2.57
2099 2189 5.573219 AGGATTTTCTTGGACATGTCATCA 58.427 37.500 26.47 13.85 0.00 3.07
2100 2190 6.151648 TCAAGGATTTTCTTGGACATGTCATC 59.848 38.462 26.47 17.41 43.05 2.92
2101 2191 6.012113 TCAAGGATTTTCTTGGACATGTCAT 58.988 36.000 26.47 10.03 43.05 3.06
2102 2192 5.241506 GTCAAGGATTTTCTTGGACATGTCA 59.758 40.000 26.47 10.65 43.05 3.58
2103 2193 5.241506 TGTCAAGGATTTTCTTGGACATGTC 59.758 40.000 17.91 17.91 43.05 3.06
2104 2194 5.139727 TGTCAAGGATTTTCTTGGACATGT 58.860 37.500 0.00 0.00 43.05 3.21
2105 2195 5.710513 TGTCAAGGATTTTCTTGGACATG 57.289 39.130 4.99 0.00 43.05 3.21
2106 2196 6.729690 TTTGTCAAGGATTTTCTTGGACAT 57.270 33.333 4.99 0.00 43.05 3.06
2107 2197 6.514870 CGATTTGTCAAGGATTTTCTTGGACA 60.515 38.462 4.99 0.00 43.05 4.02
2108 2198 5.858581 CGATTTGTCAAGGATTTTCTTGGAC 59.141 40.000 4.99 0.00 43.05 4.02
2109 2199 5.534654 ACGATTTGTCAAGGATTTTCTTGGA 59.465 36.000 4.99 0.00 43.05 3.53
2110 2200 5.772521 ACGATTTGTCAAGGATTTTCTTGG 58.227 37.500 4.99 0.00 43.05 3.61
2111 2201 6.917477 TCAACGATTTGTCAAGGATTTTCTTG 59.083 34.615 0.00 0.00 43.91 3.02
2112 2202 7.038154 TCAACGATTTGTCAAGGATTTTCTT 57.962 32.000 0.00 0.00 34.02 2.52
2113 2203 6.633500 TCAACGATTTGTCAAGGATTTTCT 57.367 33.333 0.00 0.00 34.02 2.52
2114 2204 6.695278 TGTTCAACGATTTGTCAAGGATTTTC 59.305 34.615 0.00 0.00 34.02 2.29
2115 2205 6.568869 TGTTCAACGATTTGTCAAGGATTTT 58.431 32.000 0.00 0.00 34.02 1.82
2116 2206 6.142818 TGTTCAACGATTTGTCAAGGATTT 57.857 33.333 0.00 0.00 34.02 2.17
2117 2207 5.766150 TGTTCAACGATTTGTCAAGGATT 57.234 34.783 0.00 0.00 34.02 3.01
2118 2208 5.766150 TTGTTCAACGATTTGTCAAGGAT 57.234 34.783 0.00 0.00 34.02 3.24
2119 2209 5.568685 TTTGTTCAACGATTTGTCAAGGA 57.431 34.783 0.00 0.00 33.19 3.36
2120 2210 5.574830 TGTTTTGTTCAACGATTTGTCAAGG 59.425 36.000 0.00 0.00 33.19 3.61
2121 2211 6.088749 TGTGTTTTGTTCAACGATTTGTCAAG 59.911 34.615 0.00 0.00 33.19 3.02
2122 2212 5.920840 TGTGTTTTGTTCAACGATTTGTCAA 59.079 32.000 0.00 0.00 34.02 3.18
2123 2213 5.461526 TGTGTTTTGTTCAACGATTTGTCA 58.538 33.333 0.00 0.00 34.02 3.58
2124 2214 6.306837 TCTTGTGTTTTGTTCAACGATTTGTC 59.693 34.615 0.00 0.00 34.02 3.18
2125 2215 6.153067 TCTTGTGTTTTGTTCAACGATTTGT 58.847 32.000 0.00 0.00 34.02 2.83
2126 2216 6.624710 TCTTGTGTTTTGTTCAACGATTTG 57.375 33.333 0.00 0.00 0.00 2.32
2127 2217 6.866248 ACTTCTTGTGTTTTGTTCAACGATTT 59.134 30.769 0.00 0.00 0.00 2.17
2128 2218 6.386654 ACTTCTTGTGTTTTGTTCAACGATT 58.613 32.000 0.00 0.00 0.00 3.34
2129 2219 5.949735 ACTTCTTGTGTTTTGTTCAACGAT 58.050 33.333 0.00 0.00 0.00 3.73
2130 2220 5.365403 ACTTCTTGTGTTTTGTTCAACGA 57.635 34.783 0.00 0.00 0.00 3.85
2131 2221 6.143118 TCAAACTTCTTGTGTTTTGTTCAACG 59.857 34.615 0.00 0.00 35.71 4.10
2132 2222 7.169140 AGTCAAACTTCTTGTGTTTTGTTCAAC 59.831 33.333 0.00 0.00 35.71 3.18
2133 2223 7.168972 CAGTCAAACTTCTTGTGTTTTGTTCAA 59.831 33.333 0.00 0.00 35.71 2.69
2134 2224 6.640499 CAGTCAAACTTCTTGTGTTTTGTTCA 59.360 34.615 0.00 0.00 35.71 3.18
2135 2225 6.861055 TCAGTCAAACTTCTTGTGTTTTGTTC 59.139 34.615 0.00 0.00 35.71 3.18
2136 2226 6.640907 GTCAGTCAAACTTCTTGTGTTTTGTT 59.359 34.615 0.00 0.00 35.71 2.83
2137 2227 6.016276 AGTCAGTCAAACTTCTTGTGTTTTGT 60.016 34.615 0.00 0.00 35.71 2.83
2138 2228 6.381801 AGTCAGTCAAACTTCTTGTGTTTTG 58.618 36.000 0.00 0.00 35.71 2.44
2139 2229 6.431234 AGAGTCAGTCAAACTTCTTGTGTTTT 59.569 34.615 0.00 0.00 35.71 2.43
2140 2230 5.940470 AGAGTCAGTCAAACTTCTTGTGTTT 59.060 36.000 0.00 0.00 38.04 2.83
2141 2231 5.352569 CAGAGTCAGTCAAACTTCTTGTGTT 59.647 40.000 0.00 0.00 0.00 3.32
2142 2232 4.872691 CAGAGTCAGTCAAACTTCTTGTGT 59.127 41.667 0.00 0.00 0.00 3.72
2143 2233 5.111989 TCAGAGTCAGTCAAACTTCTTGTG 58.888 41.667 0.00 0.00 0.00 3.33
2144 2234 5.344743 TCAGAGTCAGTCAAACTTCTTGT 57.655 39.130 0.00 0.00 0.00 3.16
2145 2235 6.073331 GGAATCAGAGTCAGTCAAACTTCTTG 60.073 42.308 0.00 0.00 0.00 3.02
2146 2236 5.994668 GGAATCAGAGTCAGTCAAACTTCTT 59.005 40.000 0.00 0.00 0.00 2.52
2147 2237 5.306678 AGGAATCAGAGTCAGTCAAACTTCT 59.693 40.000 0.00 0.00 0.00 2.85
2148 2238 5.546526 AGGAATCAGAGTCAGTCAAACTTC 58.453 41.667 0.00 0.00 0.00 3.01
2149 2239 5.306678 AGAGGAATCAGAGTCAGTCAAACTT 59.693 40.000 0.00 0.00 0.00 2.66
2150 2240 4.837860 AGAGGAATCAGAGTCAGTCAAACT 59.162 41.667 0.00 0.00 0.00 2.66
2151 2241 5.146010 AGAGGAATCAGAGTCAGTCAAAC 57.854 43.478 0.00 0.00 0.00 2.93
2152 2242 4.835056 TGAGAGGAATCAGAGTCAGTCAAA 59.165 41.667 0.00 0.00 0.00 2.69
2153 2243 4.411013 TGAGAGGAATCAGAGTCAGTCAA 58.589 43.478 0.00 0.00 0.00 3.18
2154 2244 4.039603 TGAGAGGAATCAGAGTCAGTCA 57.960 45.455 0.00 0.00 0.00 3.41
2155 2245 4.202141 CCATGAGAGGAATCAGAGTCAGTC 60.202 50.000 0.00 0.00 31.44 3.51
2156 2246 3.705579 CCATGAGAGGAATCAGAGTCAGT 59.294 47.826 0.00 0.00 31.44 3.41
2157 2247 3.705579 ACCATGAGAGGAATCAGAGTCAG 59.294 47.826 0.00 0.00 31.44 3.51
2158 2248 3.450096 CACCATGAGAGGAATCAGAGTCA 59.550 47.826 0.00 0.00 31.44 3.41
2159 2249 3.703556 TCACCATGAGAGGAATCAGAGTC 59.296 47.826 0.00 0.00 31.44 3.36
2160 2250 3.717576 TCACCATGAGAGGAATCAGAGT 58.282 45.455 0.00 0.00 31.44 3.24
2170 2260 8.499324 CTGATCGATCATCCTCACCATGAGAG 62.499 50.000 27.43 7.11 40.38 3.20
2171 2261 6.784040 CTGATCGATCATCCTCACCATGAGA 61.784 48.000 27.43 0.00 40.38 3.27
2172 2262 3.257624 TGATCGATCATCCTCACCATGAG 59.742 47.826 23.99 0.00 43.91 2.90
2173 2263 3.233507 TGATCGATCATCCTCACCATGA 58.766 45.455 23.99 0.00 34.74 3.07
2174 2264 3.006644 ACTGATCGATCATCCTCACCATG 59.993 47.826 27.43 14.25 36.02 3.66
2175 2265 3.006644 CACTGATCGATCATCCTCACCAT 59.993 47.826 27.43 3.54 36.02 3.55
2176 2266 2.363359 CACTGATCGATCATCCTCACCA 59.637 50.000 27.43 3.07 36.02 4.17
2177 2267 2.288702 CCACTGATCGATCATCCTCACC 60.289 54.545 27.43 0.00 36.02 4.02
2178 2268 2.625314 TCCACTGATCGATCATCCTCAC 59.375 50.000 27.43 0.00 36.02 3.51
2179 2269 2.889678 CTCCACTGATCGATCATCCTCA 59.110 50.000 27.43 6.26 36.02 3.86
2180 2270 2.230992 CCTCCACTGATCGATCATCCTC 59.769 54.545 27.43 1.08 36.02 3.71
2181 2271 2.246469 CCTCCACTGATCGATCATCCT 58.754 52.381 27.43 11.04 36.02 3.24
2182 2272 1.274728 CCCTCCACTGATCGATCATCC 59.725 57.143 27.43 1.39 36.02 3.51
2183 2273 1.274728 CCCCTCCACTGATCGATCATC 59.725 57.143 27.43 2.72 36.02 2.92
2184 2274 1.346062 CCCCTCCACTGATCGATCAT 58.654 55.000 27.43 15.09 36.02 2.45
2185 2275 0.760567 CCCCCTCCACTGATCGATCA 60.761 60.000 25.80 25.80 35.16 2.92
2186 2276 2.053618 CCCCCTCCACTGATCGATC 58.946 63.158 18.72 18.72 0.00 3.69
2187 2277 2.143419 GCCCCCTCCACTGATCGAT 61.143 63.158 0.00 0.00 0.00 3.59
2188 2278 1.944896 TAGCCCCCTCCACTGATCGA 61.945 60.000 0.00 0.00 0.00 3.59
2189 2279 1.048724 TTAGCCCCCTCCACTGATCG 61.049 60.000 0.00 0.00 0.00 3.69
2190 2280 0.761802 CTTAGCCCCCTCCACTGATC 59.238 60.000 0.00 0.00 0.00 2.92
2191 2281 0.695803 CCTTAGCCCCCTCCACTGAT 60.696 60.000 0.00 0.00 0.00 2.90
2192 2282 1.306997 CCTTAGCCCCCTCCACTGA 60.307 63.158 0.00 0.00 0.00 3.41
2193 2283 2.378634 CCCTTAGCCCCCTCCACTG 61.379 68.421 0.00 0.00 0.00 3.66
2194 2284 2.042930 CCCTTAGCCCCCTCCACT 59.957 66.667 0.00 0.00 0.00 4.00
2195 2285 3.810188 GCCCTTAGCCCCCTCCAC 61.810 72.222 0.00 0.00 34.35 4.02
2196 2286 3.675918 ATGCCCTTAGCCCCCTCCA 62.676 63.158 0.00 0.00 42.71 3.86
2197 2287 2.778717 ATGCCCTTAGCCCCCTCC 60.779 66.667 0.00 0.00 42.71 4.30
2198 2288 1.060163 TACATGCCCTTAGCCCCCTC 61.060 60.000 0.00 0.00 42.71 4.30
2199 2289 1.005556 TACATGCCCTTAGCCCCCT 59.994 57.895 0.00 0.00 42.71 4.79
2200 2290 1.150764 GTACATGCCCTTAGCCCCC 59.849 63.158 0.00 0.00 42.71 5.40
2201 2291 0.257616 TTGTACATGCCCTTAGCCCC 59.742 55.000 0.00 0.00 42.71 5.80
2202 2292 1.956477 CATTGTACATGCCCTTAGCCC 59.044 52.381 0.00 0.00 42.71 5.19
2203 2293 1.956477 CCATTGTACATGCCCTTAGCC 59.044 52.381 0.00 0.00 42.71 3.93
2204 2294 2.358898 CACCATTGTACATGCCCTTAGC 59.641 50.000 0.00 0.00 44.14 3.09
2205 2295 2.951642 CCACCATTGTACATGCCCTTAG 59.048 50.000 0.00 0.00 0.00 2.18
2206 2296 2.948147 GCCACCATTGTACATGCCCTTA 60.948 50.000 0.00 0.00 0.00 2.69
2207 2297 1.851304 CCACCATTGTACATGCCCTT 58.149 50.000 0.00 0.00 0.00 3.95
2208 2298 0.684153 GCCACCATTGTACATGCCCT 60.684 55.000 0.00 0.00 0.00 5.19
2209 2299 0.969917 TGCCACCATTGTACATGCCC 60.970 55.000 0.00 0.00 0.00 5.36
2210 2300 1.113788 ATGCCACCATTGTACATGCC 58.886 50.000 0.00 0.00 0.00 4.40
2211 2301 3.305539 CCATATGCCACCATTGTACATGC 60.306 47.826 0.00 0.00 32.85 4.06
2212 2302 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
2213 2303 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
2214 2304 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
2215 2305 5.312895 TGTATCCATATGCCACCATTGTAC 58.687 41.667 0.00 0.00 32.85 2.90
2216 2306 5.309282 TCTGTATCCATATGCCACCATTGTA 59.691 40.000 0.00 0.00 32.85 2.41
2217 2307 4.104579 TCTGTATCCATATGCCACCATTGT 59.895 41.667 0.00 0.00 32.85 2.71
2218 2308 4.654915 TCTGTATCCATATGCCACCATTG 58.345 43.478 0.00 0.00 32.85 2.82
2219 2309 4.999469 TCTGTATCCATATGCCACCATT 57.001 40.909 0.00 0.00 32.85 3.16
2220 2310 4.290459 ACATCTGTATCCATATGCCACCAT 59.710 41.667 0.00 0.00 30.42 3.55
2221 2311 3.652387 ACATCTGTATCCATATGCCACCA 59.348 43.478 0.00 0.00 30.42 4.17
2222 2312 4.292186 ACATCTGTATCCATATGCCACC 57.708 45.455 0.00 0.00 30.42 4.61
2223 2313 4.697352 GGAACATCTGTATCCATATGCCAC 59.303 45.833 0.00 0.00 30.42 5.01
2224 2314 4.350520 TGGAACATCTGTATCCATATGCCA 59.649 41.667 0.00 0.00 38.30 4.92
2225 2315 4.910195 TGGAACATCTGTATCCATATGCC 58.090 43.478 0.00 0.00 38.30 4.40
2242 2332 9.569167 GCCTCAAACTACTTTTTATTATGGAAC 57.431 33.333 0.00 0.00 0.00 3.62
2243 2333 9.303116 TGCCTCAAACTACTTTTTATTATGGAA 57.697 29.630 0.00 0.00 0.00 3.53
2244 2334 8.871629 TGCCTCAAACTACTTTTTATTATGGA 57.128 30.769 0.00 0.00 0.00 3.41
2245 2335 9.520204 CATGCCTCAAACTACTTTTTATTATGG 57.480 33.333 0.00 0.00 0.00 2.74
2281 2371 8.548877 AGTGATAGCTTACATTAGGGAGAAAAA 58.451 33.333 0.00 0.00 0.00 1.94
2282 2372 8.090788 AGTGATAGCTTACATTAGGGAGAAAA 57.909 34.615 0.00 0.00 0.00 2.29
2283 2373 7.676683 AGTGATAGCTTACATTAGGGAGAAA 57.323 36.000 0.00 0.00 0.00 2.52
2284 2374 8.005388 ACTAGTGATAGCTTACATTAGGGAGAA 58.995 37.037 18.70 0.00 32.98 2.87
2285 2375 7.448777 CACTAGTGATAGCTTACATTAGGGAGA 59.551 40.741 18.45 0.00 33.57 3.71
2286 2376 7.309499 CCACTAGTGATAGCTTACATTAGGGAG 60.309 44.444 24.68 11.68 33.57 4.30
2287 2377 6.493802 CCACTAGTGATAGCTTACATTAGGGA 59.506 42.308 24.68 0.00 33.57 4.20
2288 2378 6.493802 TCCACTAGTGATAGCTTACATTAGGG 59.506 42.308 24.68 16.26 32.98 3.53
2289 2379 7.371936 GTCCACTAGTGATAGCTTACATTAGG 58.628 42.308 24.68 1.38 32.98 2.69
2290 2380 7.231722 AGGTCCACTAGTGATAGCTTACATTAG 59.768 40.741 24.68 15.40 34.22 1.73
2291 2381 7.067421 AGGTCCACTAGTGATAGCTTACATTA 58.933 38.462 24.68 0.00 0.00 1.90
2292 2382 5.900123 AGGTCCACTAGTGATAGCTTACATT 59.100 40.000 24.68 2.27 0.00 2.71
2293 2383 5.459505 AGGTCCACTAGTGATAGCTTACAT 58.540 41.667 24.68 5.43 0.00 2.29
2294 2384 4.868268 AGGTCCACTAGTGATAGCTTACA 58.132 43.478 24.68 0.00 0.00 2.41
2295 2385 5.127356 ACAAGGTCCACTAGTGATAGCTTAC 59.873 44.000 27.52 14.48 34.62 2.34
2296 2386 5.269991 ACAAGGTCCACTAGTGATAGCTTA 58.730 41.667 27.52 6.33 34.62 3.09
2297 2387 4.097418 ACAAGGTCCACTAGTGATAGCTT 58.903 43.478 24.68 24.77 35.80 3.74
2298 2388 3.714144 ACAAGGTCCACTAGTGATAGCT 58.286 45.455 24.68 21.01 0.00 3.32
2299 2389 4.473477 AACAAGGTCCACTAGTGATAGC 57.527 45.455 24.68 19.26 0.00 2.97
2300 2390 7.406031 TCTTAACAAGGTCCACTAGTGATAG 57.594 40.000 24.68 7.85 0.00 2.08
2301 2391 7.786046 TTCTTAACAAGGTCCACTAGTGATA 57.214 36.000 24.68 9.06 0.00 2.15
2302 2392 6.681729 TTCTTAACAAGGTCCACTAGTGAT 57.318 37.500 24.68 4.33 0.00 3.06
2303 2393 6.488769 TTTCTTAACAAGGTCCACTAGTGA 57.511 37.500 24.68 7.64 0.00 3.41
2304 2394 8.311836 TCTATTTCTTAACAAGGTCCACTAGTG 58.688 37.037 16.34 16.34 0.00 2.74
2305 2395 8.431910 TCTATTTCTTAACAAGGTCCACTAGT 57.568 34.615 0.00 0.00 0.00 2.57
2306 2396 9.720769 TTTCTATTTCTTAACAAGGTCCACTAG 57.279 33.333 0.00 0.00 0.00 2.57
2308 2398 8.990163 TTTTCTATTTCTTAACAAGGTCCACT 57.010 30.769 0.00 0.00 0.00 4.00
2349 2439 9.950496 ATTGAAGTGAAAAGTAGAGATACATGT 57.050 29.630 2.69 2.69 0.00 3.21
2356 2446 9.613428 TGAAAAGATTGAAGTGAAAAGTAGAGA 57.387 29.630 0.00 0.00 0.00 3.10
2361 2451 9.710900 AAAGTTGAAAAGATTGAAGTGAAAAGT 57.289 25.926 0.00 0.00 0.00 2.66
2364 2454 9.703892 TCAAAAGTTGAAAAGATTGAAGTGAAA 57.296 25.926 0.00 0.00 36.59 2.69
2365 2455 9.139174 GTCAAAAGTTGAAAAGATTGAAGTGAA 57.861 29.630 0.00 0.00 42.15 3.18
2366 2456 8.303156 TGTCAAAAGTTGAAAAGATTGAAGTGA 58.697 29.630 0.00 0.00 42.15 3.41
2367 2457 8.375465 GTGTCAAAAGTTGAAAAGATTGAAGTG 58.625 33.333 0.00 0.00 42.15 3.16
2368 2458 7.545615 GGTGTCAAAAGTTGAAAAGATTGAAGT 59.454 33.333 0.00 0.00 42.15 3.01
2369 2459 7.253750 CGGTGTCAAAAGTTGAAAAGATTGAAG 60.254 37.037 0.00 0.00 42.15 3.02
2370 2460 6.529829 CGGTGTCAAAAGTTGAAAAGATTGAA 59.470 34.615 0.00 0.00 42.15 2.69
2371 2461 6.033341 CGGTGTCAAAAGTTGAAAAGATTGA 58.967 36.000 0.00 0.00 42.15 2.57
2372 2462 5.231991 CCGGTGTCAAAAGTTGAAAAGATTG 59.768 40.000 0.00 0.00 42.15 2.67
2373 2463 5.348164 CCGGTGTCAAAAGTTGAAAAGATT 58.652 37.500 0.00 0.00 42.15 2.40
2374 2464 4.202111 CCCGGTGTCAAAAGTTGAAAAGAT 60.202 41.667 0.00 0.00 42.15 2.40
2375 2465 3.129638 CCCGGTGTCAAAAGTTGAAAAGA 59.870 43.478 0.00 0.00 42.15 2.52
2376 2466 3.443976 CCCGGTGTCAAAAGTTGAAAAG 58.556 45.455 0.00 0.00 42.15 2.27
2377 2467 2.417515 GCCCGGTGTCAAAAGTTGAAAA 60.418 45.455 0.00 0.00 42.15 2.29
2378 2468 1.135333 GCCCGGTGTCAAAAGTTGAAA 59.865 47.619 0.00 0.00 42.15 2.69
2379 2469 0.741915 GCCCGGTGTCAAAAGTTGAA 59.258 50.000 0.00 0.00 42.15 2.69
2380 2470 0.394488 TGCCCGGTGTCAAAAGTTGA 60.394 50.000 0.00 0.00 37.33 3.18
2381 2471 0.457851 TTGCCCGGTGTCAAAAGTTG 59.542 50.000 0.00 0.00 0.00 3.16
2382 2472 0.744281 CTTGCCCGGTGTCAAAAGTT 59.256 50.000 0.00 0.00 0.00 2.66
2383 2473 0.106918 TCTTGCCCGGTGTCAAAAGT 60.107 50.000 0.00 0.00 0.00 2.66
2384 2474 0.310854 GTCTTGCCCGGTGTCAAAAG 59.689 55.000 0.00 0.00 0.00 2.27
2385 2475 0.106918 AGTCTTGCCCGGTGTCAAAA 60.107 50.000 0.00 0.00 0.00 2.44
2386 2476 0.106918 AAGTCTTGCCCGGTGTCAAA 60.107 50.000 0.00 0.00 0.00 2.69
2387 2477 0.106918 AAAGTCTTGCCCGGTGTCAA 60.107 50.000 0.00 0.48 0.00 3.18
2388 2478 0.106918 AAAAGTCTTGCCCGGTGTCA 60.107 50.000 0.00 0.00 0.00 3.58
2389 2479 0.591659 GAAAAGTCTTGCCCGGTGTC 59.408 55.000 0.00 0.00 0.00 3.67
2390 2480 0.182775 AGAAAAGTCTTGCCCGGTGT 59.817 50.000 0.00 0.00 0.00 4.16
2391 2481 0.875059 GAGAAAAGTCTTGCCCGGTG 59.125 55.000 0.00 0.00 32.80 4.94
2392 2482 0.765510 AGAGAAAAGTCTTGCCCGGT 59.234 50.000 0.00 0.00 32.80 5.28
2393 2483 1.443802 GAGAGAAAAGTCTTGCCCGG 58.556 55.000 0.00 0.00 32.80 5.73
2394 2484 1.270839 TGGAGAGAAAAGTCTTGCCCG 60.271 52.381 0.00 0.00 32.80 6.13
2395 2485 2.568623 TGGAGAGAAAAGTCTTGCCC 57.431 50.000 0.00 0.00 32.80 5.36
2396 2486 2.227626 GCTTGGAGAGAAAAGTCTTGCC 59.772 50.000 0.00 0.00 32.80 4.52
2397 2487 2.880890 TGCTTGGAGAGAAAAGTCTTGC 59.119 45.455 0.00 0.00 32.80 4.01
2398 2488 3.251972 GGTGCTTGGAGAGAAAAGTCTTG 59.748 47.826 0.00 0.00 32.80 3.02
2399 2489 3.481453 GGTGCTTGGAGAGAAAAGTCTT 58.519 45.455 0.00 0.00 32.80 3.01
2400 2490 2.224646 GGGTGCTTGGAGAGAAAAGTCT 60.225 50.000 0.00 0.00 36.55 3.24
2401 2491 2.155279 GGGTGCTTGGAGAGAAAAGTC 58.845 52.381 0.00 0.00 0.00 3.01
2402 2492 1.543429 CGGGTGCTTGGAGAGAAAAGT 60.543 52.381 0.00 0.00 0.00 2.66
2403 2493 1.160137 CGGGTGCTTGGAGAGAAAAG 58.840 55.000 0.00 0.00 0.00 2.27
2404 2494 0.889186 GCGGGTGCTTGGAGAGAAAA 60.889 55.000 0.00 0.00 38.39 2.29
2405 2495 1.302511 GCGGGTGCTTGGAGAGAAA 60.303 57.895 0.00 0.00 38.39 2.52
2406 2496 2.347490 GCGGGTGCTTGGAGAGAA 59.653 61.111 0.00 0.00 38.39 2.87
2407 2497 3.706373 GGCGGGTGCTTGGAGAGA 61.706 66.667 0.00 0.00 42.25 3.10
2408 2498 3.672295 GAGGCGGGTGCTTGGAGAG 62.672 68.421 0.00 0.00 42.25 3.20
2409 2499 3.706373 GAGGCGGGTGCTTGGAGA 61.706 66.667 0.00 0.00 42.25 3.71
2410 2500 4.785453 GGAGGCGGGTGCTTGGAG 62.785 72.222 0.00 0.00 42.25 3.86
2419 2509 4.033776 TCCTTTGCAGGAGGCGGG 62.034 66.667 12.16 0.00 45.20 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.