Multiple sequence alignment - TraesCS2A01G456800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G456800 chr2A 100.000 4417 0 0 1 4417 705528817 705524401 0.000000e+00 8157
1 TraesCS2A01G456800 chr2B 92.551 2054 121 13 924 2975 676194668 676192645 0.000000e+00 2916
2 TraesCS2A01G456800 chr2B 90.014 2203 157 26 861 3021 676680406 676678225 0.000000e+00 2791
3 TraesCS2A01G456800 chr2B 85.831 2209 225 40 871 3021 676477895 676475717 0.000000e+00 2265
4 TraesCS2A01G456800 chr2B 93.593 1436 48 18 2987 4417 676192551 676191155 0.000000e+00 2102
5 TraesCS2A01G456800 chr2B 84.965 1297 146 29 1500 2769 676485413 676484139 0.000000e+00 1269
6 TraesCS2A01G456800 chr2B 88.142 1012 91 15 1701 2694 676590169 676589169 0.000000e+00 1177
7 TraesCS2A01G456800 chr2B 89.765 850 75 9 3574 4417 676481461 676480618 0.000000e+00 1077
8 TraesCS2A01G456800 chr2B 89.660 764 70 6 856 1616 676590932 676590175 0.000000e+00 965
9 TraesCS2A01G456800 chr2B 89.266 736 63 9 3611 4340 676475224 676474499 0.000000e+00 907
10 TraesCS2A01G456800 chr2B 85.463 853 109 8 3574 4417 676587988 676587142 0.000000e+00 874
11 TraesCS2A01G456800 chr2B 83.780 783 88 20 2754 3514 676588893 676588128 0.000000e+00 706
12 TraesCS2A01G456800 chr2B 87.809 607 55 10 856 1456 676486010 676485417 0.000000e+00 693
13 TraesCS2A01G456800 chr2B 87.017 362 41 5 432 790 98393778 98394136 1.910000e-108 403
14 TraesCS2A01G456800 chr2B 84.677 248 27 8 3297 3539 676678027 676677786 2.050000e-58 237
15 TraesCS2A01G456800 chr2B 88.202 178 16 3 3054 3226 676678221 676678044 1.610000e-49 207
16 TraesCS2A01G456800 chr2B 83.333 228 30 6 4 226 494401774 494401998 2.080000e-48 204
17 TraesCS2A01G456800 chr2B 87.500 176 15 5 3054 3223 676482038 676481864 3.490000e-46 196
18 TraesCS2A01G456800 chr2B 86.628 172 17 4 3057 3223 676475710 676475540 7.540000e-43 185
19 TraesCS2A01G456800 chr2B 86.875 160 16 5 3289 3446 676475536 676475380 1.630000e-39 174
20 TraesCS2A01G456800 chr2B 87.023 131 14 2 3318 3446 676481716 676481587 1.280000e-30 145
21 TraesCS2A01G456800 chr2B 88.506 87 10 0 4331 4417 676676627 676676541 6.040000e-19 106
22 TraesCS2A01G456800 chr2D 88.804 2224 167 36 831 3001 564703556 564701362 0.000000e+00 2652
23 TraesCS2A01G456800 chr2D 89.939 1809 157 15 901 2694 564923621 564921823 0.000000e+00 2309
24 TraesCS2A01G456800 chr2D 86.584 1446 135 35 2997 4417 564686887 564685476 0.000000e+00 1541
25 TraesCS2A01G456800 chr2D 85.932 853 106 9 3574 4417 564920658 564919811 0.000000e+00 898
26 TraesCS2A01G456800 chr2D 83.546 784 92 20 2754 3514 564921567 564920798 0.000000e+00 699
27 TraesCS2A01G456800 chr2D 87.332 371 37 9 431 795 632465498 632465864 2.460000e-112 416
28 TraesCS2A01G456800 chr2D 86.610 351 38 8 1 345 565049622 565049275 3.220000e-101 379
29 TraesCS2A01G456800 chr1A 84.544 1611 154 39 1465 3016 27296163 27297737 0.000000e+00 1507
30 TraesCS2A01G456800 chr1A 90.814 381 31 4 3959 4337 27307229 27307607 1.420000e-139 507
31 TraesCS2A01G456800 chr4A 81.690 1775 262 46 929 2670 26012551 26014295 0.000000e+00 1419
32 TraesCS2A01G456800 chr4A 80.377 265 33 12 3257 3510 25807099 25807355 2.710000e-42 183
33 TraesCS2A01G456800 chr4D 81.153 1682 261 41 902 2552 441494749 441493093 0.000000e+00 1299
34 TraesCS2A01G456800 chr4D 82.161 1194 173 31 1494 2670 441514127 441512957 0.000000e+00 989
35 TraesCS2A01G456800 chr4D 81.038 1002 157 23 929 1915 441639308 441638325 0.000000e+00 767
36 TraesCS2A01G456800 chr4D 79.223 515 72 26 2970 3475 441492640 441492152 4.260000e-85 326
37 TraesCS2A01G456800 chr4D 75.132 378 45 22 2679 3018 441512910 441512544 9.970000e-27 132
38 TraesCS2A01G456800 chr4B 79.406 1112 194 24 929 2024 548105738 548104646 0.000000e+00 752
39 TraesCS2A01G456800 chr4B 86.450 369 46 4 430 795 529837130 529837497 6.880000e-108 401
40 TraesCS2A01G456800 chr4B 77.757 535 77 29 2970 3491 547567865 547567360 1.550000e-74 291
41 TraesCS2A01G456800 chr7A 89.311 421 44 1 3921 4340 701431286 701430866 1.090000e-145 527
42 TraesCS2A01G456800 chr7A 83.381 349 45 10 3574 3918 701436170 701435831 1.190000e-80 311
43 TraesCS2A01G456800 chr7A 93.846 195 12 0 1232 1426 701438454 701438260 1.200000e-75 294
44 TraesCS2A01G456800 chr7A 81.513 238 38 4 1 234 91540747 91540982 1.620000e-44 191
45 TraesCS2A01G456800 chr7A 86.301 146 17 3 3289 3433 701436447 701436304 5.920000e-34 156
46 TraesCS2A01G456800 chr5B 87.466 367 39 6 431 795 604227882 604227521 2.460000e-112 416
47 TraesCS2A01G456800 chr6B 87.097 372 38 8 431 795 560702988 560702620 3.180000e-111 412
48 TraesCS2A01G456800 chr3D 86.253 371 44 6 430 795 420484419 420484051 3.200000e-106 396
49 TraesCS2A01G456800 chr3D 85.577 104 11 1 115 218 566688272 566688371 6.040000e-19 106
50 TraesCS2A01G456800 chr1B 86.179 369 46 5 431 795 108867560 108867193 1.150000e-105 394
51 TraesCS2A01G456800 chr1B 86.141 368 48 3 430 795 316237702 316238068 1.150000e-105 394
52 TraesCS2A01G456800 chr5D 86.022 372 44 5 430 795 545258646 545259015 4.140000e-105 392
53 TraesCS2A01G456800 chr3A 81.614 223 32 8 17 234 65178714 65178932 4.540000e-40 176
54 TraesCS2A01G456800 chr5A 81.061 132 17 7 30 156 68625107 68624979 1.010000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G456800 chr2A 705524401 705528817 4416 True 8157.000000 8157 100.000000 1 4417 1 chr2A.!!$R1 4416
1 TraesCS2A01G456800 chr2B 676191155 676194668 3513 True 2509.000000 2916 93.072000 924 4417 2 chr2B.!!$R1 3493
2 TraesCS2A01G456800 chr2B 676587142 676590932 3790 True 930.500000 1177 86.761250 856 4417 4 chr2B.!!$R3 3561
3 TraesCS2A01G456800 chr2B 676676541 676680406 3865 True 835.250000 2791 87.849750 861 4417 4 chr2B.!!$R4 3556
4 TraesCS2A01G456800 chr2B 676474499 676486010 11511 True 767.888889 2265 87.295778 856 4417 9 chr2B.!!$R2 3561
5 TraesCS2A01G456800 chr2D 564701362 564703556 2194 True 2652.000000 2652 88.804000 831 3001 1 chr2D.!!$R2 2170
6 TraesCS2A01G456800 chr2D 564685476 564686887 1411 True 1541.000000 1541 86.584000 2997 4417 1 chr2D.!!$R1 1420
7 TraesCS2A01G456800 chr2D 564919811 564923621 3810 True 1302.000000 2309 86.472333 901 4417 3 chr2D.!!$R4 3516
8 TraesCS2A01G456800 chr1A 27296163 27297737 1574 False 1507.000000 1507 84.544000 1465 3016 1 chr1A.!!$F1 1551
9 TraesCS2A01G456800 chr4A 26012551 26014295 1744 False 1419.000000 1419 81.690000 929 2670 1 chr4A.!!$F2 1741
10 TraesCS2A01G456800 chr4D 441492152 441494749 2597 True 812.500000 1299 80.188000 902 3475 2 chr4D.!!$R2 2573
11 TraesCS2A01G456800 chr4D 441638325 441639308 983 True 767.000000 767 81.038000 929 1915 1 chr4D.!!$R1 986
12 TraesCS2A01G456800 chr4D 441512544 441514127 1583 True 560.500000 989 78.646500 1494 3018 2 chr4D.!!$R3 1524
13 TraesCS2A01G456800 chr4B 548104646 548105738 1092 True 752.000000 752 79.406000 929 2024 1 chr4B.!!$R2 1095
14 TraesCS2A01G456800 chr4B 547567360 547567865 505 True 291.000000 291 77.757000 2970 3491 1 chr4B.!!$R1 521
15 TraesCS2A01G456800 chr7A 701435831 701438454 2623 True 253.666667 311 87.842667 1232 3918 3 chr7A.!!$R2 2686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 705 0.031857 TGAAAATGTGCAGCCCAACG 59.968 50.0 0.00 0.00 0.00 4.10 F
705 706 0.031994 GAAAATGTGCAGCCCAACGT 59.968 50.0 0.00 0.00 0.00 3.99 F
1533 9664 0.111704 CTTGCGACGTCGTTGTCAAG 60.112 55.0 35.48 31.53 42.22 3.02 F
2396 10670 1.604604 ACAAACCATTGGGACAGTCG 58.395 50.0 7.78 0.00 42.39 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2582 10856 1.202855 AGCATGAAGAGTGCCAACAGT 60.203 47.619 0.00 0.0 43.50 3.55 R
2589 10863 1.939255 GCCTAGAAGCATGAAGAGTGC 59.061 52.381 0.00 0.0 42.81 4.40 R
2590 10864 3.257469 TGCCTAGAAGCATGAAGAGTG 57.743 47.619 0.00 0.0 38.00 3.51 R
3953 13378 1.470996 GGTTGGCCACAGGAATGCAA 61.471 55.000 3.88 0.0 34.09 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.994421 AATATTTCTTTGGTGTCCTTTGGT 57.006 33.333 0.00 0.00 0.00 3.67
24 25 6.994421 ATATTTCTTTGGTGTCCTTTGGTT 57.006 33.333 0.00 0.00 0.00 3.67
25 26 5.692115 ATTTCTTTGGTGTCCTTTGGTTT 57.308 34.783 0.00 0.00 0.00 3.27
26 27 5.491323 TTTCTTTGGTGTCCTTTGGTTTT 57.509 34.783 0.00 0.00 0.00 2.43
27 28 4.464069 TCTTTGGTGTCCTTTGGTTTTG 57.536 40.909 0.00 0.00 0.00 2.44
28 29 3.835395 TCTTTGGTGTCCTTTGGTTTTGT 59.165 39.130 0.00 0.00 0.00 2.83
29 30 5.017490 TCTTTGGTGTCCTTTGGTTTTGTA 58.983 37.500 0.00 0.00 0.00 2.41
30 31 4.993029 TTGGTGTCCTTTGGTTTTGTAG 57.007 40.909 0.00 0.00 0.00 2.74
31 32 3.292460 TGGTGTCCTTTGGTTTTGTAGG 58.708 45.455 0.00 0.00 0.00 3.18
32 33 3.053544 TGGTGTCCTTTGGTTTTGTAGGA 60.054 43.478 0.00 0.00 34.50 2.94
33 34 3.955551 GGTGTCCTTTGGTTTTGTAGGAA 59.044 43.478 0.00 0.00 38.46 3.36
34 35 4.587262 GGTGTCCTTTGGTTTTGTAGGAAT 59.413 41.667 0.00 0.00 38.46 3.01
35 36 5.508994 GGTGTCCTTTGGTTTTGTAGGAATG 60.509 44.000 0.00 0.00 38.46 2.67
36 37 5.300792 GTGTCCTTTGGTTTTGTAGGAATGA 59.699 40.000 0.00 0.00 38.46 2.57
37 38 5.534654 TGTCCTTTGGTTTTGTAGGAATGAG 59.465 40.000 0.00 0.00 38.46 2.90
38 39 5.535030 GTCCTTTGGTTTTGTAGGAATGAGT 59.465 40.000 0.00 0.00 38.46 3.41
39 40 6.040504 GTCCTTTGGTTTTGTAGGAATGAGTT 59.959 38.462 0.00 0.00 38.46 3.01
40 41 6.264518 TCCTTTGGTTTTGTAGGAATGAGTTC 59.735 38.462 0.00 0.00 33.98 3.01
65 66 9.892444 TCCTATTCCTAAGTATGATAGAAACCA 57.108 33.333 0.00 0.00 0.00 3.67
70 71 8.798975 TCCTAAGTATGATAGAAACCAATCCT 57.201 34.615 0.00 0.00 0.00 3.24
71 72 9.892444 TCCTAAGTATGATAGAAACCAATCCTA 57.108 33.333 0.00 0.00 0.00 2.94
80 81 9.973661 TGATAGAAACCAATCCTAATTCAAAGA 57.026 29.630 0.00 0.00 0.00 2.52
103 104 8.649973 AGAAAAATAACATTAGGCTAGACTCG 57.350 34.615 0.00 0.00 0.00 4.18
104 105 7.711339 AGAAAAATAACATTAGGCTAGACTCGG 59.289 37.037 0.00 0.00 0.00 4.63
105 106 6.481434 AAATAACATTAGGCTAGACTCGGT 57.519 37.500 0.00 0.00 0.00 4.69
106 107 6.481434 AATAACATTAGGCTAGACTCGGTT 57.519 37.500 0.00 8.04 0.00 4.44
107 108 3.802948 ACATTAGGCTAGACTCGGTTG 57.197 47.619 0.00 0.00 0.00 3.77
108 109 3.362706 ACATTAGGCTAGACTCGGTTGA 58.637 45.455 0.00 0.00 0.00 3.18
109 110 3.767673 ACATTAGGCTAGACTCGGTTGAA 59.232 43.478 0.00 0.00 0.00 2.69
110 111 4.222145 ACATTAGGCTAGACTCGGTTGAAA 59.778 41.667 0.00 0.00 0.00 2.69
111 112 4.877378 TTAGGCTAGACTCGGTTGAAAA 57.123 40.909 0.00 0.00 0.00 2.29
112 113 3.764237 AGGCTAGACTCGGTTGAAAAA 57.236 42.857 0.00 0.00 0.00 1.94
113 114 4.287766 AGGCTAGACTCGGTTGAAAAAT 57.712 40.909 0.00 0.00 0.00 1.82
114 115 4.652822 AGGCTAGACTCGGTTGAAAAATT 58.347 39.130 0.00 0.00 0.00 1.82
115 116 4.695928 AGGCTAGACTCGGTTGAAAAATTC 59.304 41.667 0.00 0.00 0.00 2.17
116 117 4.454504 GGCTAGACTCGGTTGAAAAATTCA 59.545 41.667 0.00 0.00 38.04 2.57
117 118 5.123979 GGCTAGACTCGGTTGAAAAATTCAT 59.876 40.000 0.00 0.00 39.84 2.57
118 119 6.315393 GGCTAGACTCGGTTGAAAAATTCATA 59.685 38.462 0.00 0.00 39.84 2.15
119 120 7.012421 GGCTAGACTCGGTTGAAAAATTCATAT 59.988 37.037 0.00 0.00 39.84 1.78
120 121 8.064814 GCTAGACTCGGTTGAAAAATTCATATC 58.935 37.037 0.00 0.00 39.84 1.63
121 122 7.921786 AGACTCGGTTGAAAAATTCATATCA 57.078 32.000 0.00 0.00 39.84 2.15
122 123 8.511604 AGACTCGGTTGAAAAATTCATATCAT 57.488 30.769 0.00 0.00 39.84 2.45
123 124 8.400947 AGACTCGGTTGAAAAATTCATATCATG 58.599 33.333 0.00 0.00 39.84 3.07
124 125 8.055279 ACTCGGTTGAAAAATTCATATCATGT 57.945 30.769 0.00 0.00 39.84 3.21
125 126 7.970061 ACTCGGTTGAAAAATTCATATCATGTG 59.030 33.333 0.00 0.00 39.84 3.21
126 127 6.751425 TCGGTTGAAAAATTCATATCATGTGC 59.249 34.615 0.00 0.00 39.84 4.57
127 128 6.530887 CGGTTGAAAAATTCATATCATGTGCA 59.469 34.615 0.00 0.00 39.84 4.57
128 129 7.223193 CGGTTGAAAAATTCATATCATGTGCAT 59.777 33.333 0.00 0.00 39.84 3.96
129 130 8.545420 GGTTGAAAAATTCATATCATGTGCATC 58.455 33.333 0.00 0.00 39.84 3.91
130 131 9.089601 GTTGAAAAATTCATATCATGTGCATCA 57.910 29.630 0.00 0.00 39.84 3.07
131 132 9.654663 TTGAAAAATTCATATCATGTGCATCAA 57.345 25.926 0.00 0.00 39.84 2.57
132 133 9.654663 TGAAAAATTCATATCATGTGCATCAAA 57.345 25.926 0.00 0.00 34.08 2.69
135 136 9.825109 AAAATTCATATCATGTGCATCAAATGA 57.175 25.926 2.51 2.51 41.58 2.57
136 137 8.812147 AATTCATATCATGTGCATCAAATGAC 57.188 30.769 2.09 0.00 40.38 3.06
137 138 6.945938 TCATATCATGTGCATCAAATGACA 57.054 33.333 2.09 0.00 40.38 3.58
138 139 7.519032 TCATATCATGTGCATCAAATGACAT 57.481 32.000 2.09 0.00 40.38 3.06
139 140 7.590279 TCATATCATGTGCATCAAATGACATC 58.410 34.615 2.09 0.00 40.38 3.06
140 141 7.447238 TCATATCATGTGCATCAAATGACATCT 59.553 33.333 2.09 0.00 40.38 2.90
141 142 5.494632 TCATGTGCATCAAATGACATCTC 57.505 39.130 0.00 0.00 33.67 2.75
142 143 5.190677 TCATGTGCATCAAATGACATCTCT 58.809 37.500 0.00 0.00 33.67 3.10
143 144 5.650703 TCATGTGCATCAAATGACATCTCTT 59.349 36.000 0.00 0.00 33.67 2.85
144 145 5.970317 TGTGCATCAAATGACATCTCTTT 57.030 34.783 0.00 0.00 0.00 2.52
145 146 5.946298 TGTGCATCAAATGACATCTCTTTC 58.054 37.500 0.00 0.00 0.00 2.62
146 147 5.106038 TGTGCATCAAATGACATCTCTTTCC 60.106 40.000 0.00 0.00 0.00 3.13
147 148 4.400251 TGCATCAAATGACATCTCTTTCCC 59.600 41.667 0.00 0.00 0.00 3.97
148 149 4.643784 GCATCAAATGACATCTCTTTCCCT 59.356 41.667 0.00 0.00 0.00 4.20
149 150 5.450137 GCATCAAATGACATCTCTTTCCCTG 60.450 44.000 0.00 0.00 0.00 4.45
150 151 5.246981 TCAAATGACATCTCTTTCCCTGT 57.753 39.130 0.00 0.00 0.00 4.00
151 152 6.373005 TCAAATGACATCTCTTTCCCTGTA 57.627 37.500 0.00 0.00 0.00 2.74
152 153 6.409704 TCAAATGACATCTCTTTCCCTGTAG 58.590 40.000 0.00 0.00 0.00 2.74
153 154 3.895232 TGACATCTCTTTCCCTGTAGC 57.105 47.619 0.00 0.00 0.00 3.58
154 155 3.173151 TGACATCTCTTTCCCTGTAGCA 58.827 45.455 0.00 0.00 0.00 3.49
155 156 3.582647 TGACATCTCTTTCCCTGTAGCAA 59.417 43.478 0.00 0.00 0.00 3.91
156 157 4.225942 TGACATCTCTTTCCCTGTAGCAAT 59.774 41.667 0.00 0.00 0.00 3.56
157 158 5.184892 ACATCTCTTTCCCTGTAGCAATT 57.815 39.130 0.00 0.00 0.00 2.32
158 159 4.946157 ACATCTCTTTCCCTGTAGCAATTG 59.054 41.667 0.00 0.00 0.00 2.32
159 160 4.908601 TCTCTTTCCCTGTAGCAATTGA 57.091 40.909 10.34 0.00 0.00 2.57
160 161 4.836825 TCTCTTTCCCTGTAGCAATTGAG 58.163 43.478 10.34 0.00 0.00 3.02
161 162 4.532126 TCTCTTTCCCTGTAGCAATTGAGA 59.468 41.667 10.34 0.00 0.00 3.27
162 163 5.190528 TCTCTTTCCCTGTAGCAATTGAGAT 59.809 40.000 10.34 0.00 0.00 2.75
163 164 6.384015 TCTCTTTCCCTGTAGCAATTGAGATA 59.616 38.462 10.34 0.00 0.00 1.98
164 165 6.349300 TCTTTCCCTGTAGCAATTGAGATAC 58.651 40.000 10.34 9.01 0.00 2.24
165 166 5.692115 TTCCCTGTAGCAATTGAGATACA 57.308 39.130 10.34 12.88 0.00 2.29
166 167 5.894298 TCCCTGTAGCAATTGAGATACAT 57.106 39.130 10.34 0.00 0.00 2.29
167 168 5.614308 TCCCTGTAGCAATTGAGATACATG 58.386 41.667 10.34 10.83 0.00 3.21
168 169 5.130975 TCCCTGTAGCAATTGAGATACATGT 59.869 40.000 10.34 2.69 0.00 3.21
169 170 5.468072 CCCTGTAGCAATTGAGATACATGTC 59.532 44.000 10.34 0.00 0.00 3.06
170 171 6.051074 CCTGTAGCAATTGAGATACATGTCA 58.949 40.000 10.34 0.00 0.00 3.58
171 172 6.709397 CCTGTAGCAATTGAGATACATGTCAT 59.291 38.462 10.34 0.00 29.66 3.06
172 173 7.095313 CCTGTAGCAATTGAGATACATGTCATC 60.095 40.741 10.34 4.47 29.66 2.92
173 174 7.503549 TGTAGCAATTGAGATACATGTCATCT 58.496 34.615 10.34 9.42 35.43 2.90
174 175 7.654923 TGTAGCAATTGAGATACATGTCATCTC 59.345 37.037 24.04 24.04 45.76 2.75
184 185 8.923609 AGATACATGTCATCTCGCTTATTATG 57.076 34.615 0.00 0.00 0.00 1.90
185 186 8.743714 AGATACATGTCATCTCGCTTATTATGA 58.256 33.333 0.00 0.00 0.00 2.15
186 187 9.526713 GATACATGTCATCTCGCTTATTATGAT 57.473 33.333 0.00 0.00 31.49 2.45
187 188 9.881649 ATACATGTCATCTCGCTTATTATGATT 57.118 29.630 0.00 0.00 31.49 2.57
188 189 8.613060 ACATGTCATCTCGCTTATTATGATTT 57.387 30.769 0.00 0.00 31.49 2.17
189 190 9.060347 ACATGTCATCTCGCTTATTATGATTTT 57.940 29.630 0.00 0.00 31.49 1.82
190 191 9.539139 CATGTCATCTCGCTTATTATGATTTTC 57.461 33.333 0.00 0.00 31.49 2.29
191 192 8.087982 TGTCATCTCGCTTATTATGATTTTCC 57.912 34.615 0.00 0.00 31.49 3.13
192 193 7.933577 TGTCATCTCGCTTATTATGATTTTCCT 59.066 33.333 0.00 0.00 31.49 3.36
193 194 9.424319 GTCATCTCGCTTATTATGATTTTCCTA 57.576 33.333 0.00 0.00 31.49 2.94
197 198 9.436957 TCTCGCTTATTATGATTTTCCTATTCC 57.563 33.333 0.00 0.00 0.00 3.01
198 199 9.442047 CTCGCTTATTATGATTTTCCTATTCCT 57.558 33.333 0.00 0.00 0.00 3.36
232 233 9.857656 TCATATCTTATGAATCAAAGAAAGCCT 57.142 29.630 10.31 0.61 35.47 4.58
235 236 7.076842 TCTTATGAATCAAAGAAAGCCTTCG 57.923 36.000 5.74 0.00 36.61 3.79
236 237 6.655003 TCTTATGAATCAAAGAAAGCCTTCGT 59.345 34.615 5.74 0.00 36.61 3.85
237 238 7.822334 TCTTATGAATCAAAGAAAGCCTTCGTA 59.178 33.333 5.74 0.00 36.61 3.43
238 239 5.862924 TGAATCAAAGAAAGCCTTCGTAG 57.137 39.130 0.00 0.00 36.61 3.51
239 240 5.305585 TGAATCAAAGAAAGCCTTCGTAGT 58.694 37.500 0.00 0.00 36.61 2.73
240 241 6.460781 TGAATCAAAGAAAGCCTTCGTAGTA 58.539 36.000 0.00 0.00 36.61 1.82
241 242 6.932400 TGAATCAAAGAAAGCCTTCGTAGTAA 59.068 34.615 0.00 0.00 36.61 2.24
242 243 7.606456 TGAATCAAAGAAAGCCTTCGTAGTAAT 59.394 33.333 0.00 0.00 36.61 1.89
243 244 9.095065 GAATCAAAGAAAGCCTTCGTAGTAATA 57.905 33.333 0.00 0.00 36.61 0.98
244 245 9.444600 AATCAAAGAAAGCCTTCGTAGTAATAA 57.555 29.630 0.00 0.00 36.61 1.40
245 246 9.614792 ATCAAAGAAAGCCTTCGTAGTAATAAT 57.385 29.630 0.00 0.00 36.61 1.28
252 253 8.983307 AAGCCTTCGTAGTAATAATACTATGC 57.017 34.615 11.05 5.71 45.37 3.14
253 254 8.118976 AGCCTTCGTAGTAATAATACTATGCA 57.881 34.615 11.05 0.00 45.37 3.96
254 255 8.582437 AGCCTTCGTAGTAATAATACTATGCAA 58.418 33.333 11.05 6.94 45.37 4.08
255 256 8.645487 GCCTTCGTAGTAATAATACTATGCAAC 58.355 37.037 11.05 0.00 45.37 4.17
256 257 9.687210 CCTTCGTAGTAATAATACTATGCAACA 57.313 33.333 11.05 0.00 45.37 3.33
276 277 9.410556 TGCAACAAAATAAATTAGAGAGAAAGC 57.589 29.630 0.00 0.00 0.00 3.51
277 278 9.631452 GCAACAAAATAAATTAGAGAGAAAGCT 57.369 29.630 0.00 0.00 0.00 3.74
280 281 9.436957 ACAAAATAAATTAGAGAGAAAGCTCGA 57.563 29.630 0.00 0.00 45.98 4.04
281 282 9.913451 CAAAATAAATTAGAGAGAAAGCTCGAG 57.087 33.333 8.45 8.45 45.98 4.04
282 283 9.877178 AAAATAAATTAGAGAGAAAGCTCGAGA 57.123 29.630 18.75 0.00 45.98 4.04
284 285 9.474920 AATAAATTAGAGAGAAAGCTCGAGATG 57.525 33.333 18.75 0.00 45.98 2.90
285 286 6.707440 AATTAGAGAGAAAGCTCGAGATGA 57.293 37.500 18.75 0.00 45.98 2.92
286 287 5.749596 TTAGAGAGAAAGCTCGAGATGAG 57.250 43.478 18.75 0.00 45.98 2.90
296 297 2.791567 CTCGAGATGAGTCCGACTTTG 58.208 52.381 6.58 0.00 40.03 2.77
297 298 2.420372 CTCGAGATGAGTCCGACTTTGA 59.580 50.000 6.58 0.00 40.03 2.69
298 299 2.817844 TCGAGATGAGTCCGACTTTGAA 59.182 45.455 1.71 0.00 0.00 2.69
299 300 3.444034 TCGAGATGAGTCCGACTTTGAAT 59.556 43.478 1.71 0.00 0.00 2.57
300 301 4.082190 TCGAGATGAGTCCGACTTTGAATT 60.082 41.667 1.71 0.00 0.00 2.17
301 302 5.124936 TCGAGATGAGTCCGACTTTGAATTA 59.875 40.000 1.71 0.00 0.00 1.40
302 303 5.805486 CGAGATGAGTCCGACTTTGAATTAA 59.195 40.000 1.71 0.00 0.00 1.40
303 304 6.477033 CGAGATGAGTCCGACTTTGAATTAAT 59.523 38.462 1.71 0.00 0.00 1.40
304 305 7.648112 CGAGATGAGTCCGACTTTGAATTAATA 59.352 37.037 1.71 0.00 0.00 0.98
305 306 9.314321 GAGATGAGTCCGACTTTGAATTAATAA 57.686 33.333 1.71 0.00 0.00 1.40
306 307 9.667107 AGATGAGTCCGACTTTGAATTAATAAA 57.333 29.630 1.71 0.00 0.00 1.40
307 308 9.922305 GATGAGTCCGACTTTGAATTAATAAAG 57.078 33.333 1.71 8.54 39.26 1.85
308 309 7.748847 TGAGTCCGACTTTGAATTAATAAAGC 58.251 34.615 1.71 4.04 37.40 3.51
309 310 7.085052 AGTCCGACTTTGAATTAATAAAGCC 57.915 36.000 9.63 0.42 37.40 4.35
310 311 6.657541 AGTCCGACTTTGAATTAATAAAGCCA 59.342 34.615 9.63 0.00 37.40 4.75
311 312 7.339466 AGTCCGACTTTGAATTAATAAAGCCAT 59.661 33.333 9.63 0.00 37.40 4.40
312 313 7.973944 GTCCGACTTTGAATTAATAAAGCCATT 59.026 33.333 9.63 0.00 37.40 3.16
313 314 7.973388 TCCGACTTTGAATTAATAAAGCCATTG 59.027 33.333 9.63 0.00 37.40 2.82
314 315 7.973388 CCGACTTTGAATTAATAAAGCCATTGA 59.027 33.333 9.63 0.00 37.40 2.57
315 316 8.798153 CGACTTTGAATTAATAAAGCCATTGAC 58.202 33.333 9.63 0.00 37.40 3.18
316 317 9.860898 GACTTTGAATTAATAAAGCCATTGACT 57.139 29.630 9.63 0.00 37.40 3.41
329 330 6.903883 AGCCATTGACTATAACTTACAACG 57.096 37.500 0.00 0.00 0.00 4.10
330 331 6.636705 AGCCATTGACTATAACTTACAACGA 58.363 36.000 0.00 0.00 0.00 3.85
331 332 6.757010 AGCCATTGACTATAACTTACAACGAG 59.243 38.462 0.00 0.00 0.00 4.18
332 333 6.509677 GCCATTGACTATAACTTACAACGAGC 60.510 42.308 0.00 0.00 0.00 5.03
333 334 6.533723 CCATTGACTATAACTTACAACGAGCA 59.466 38.462 0.00 0.00 0.00 4.26
334 335 7.064134 CCATTGACTATAACTTACAACGAGCAA 59.936 37.037 0.00 0.00 0.00 3.91
335 336 8.604035 CATTGACTATAACTTACAACGAGCAAT 58.396 33.333 0.00 0.00 0.00 3.56
336 337 9.811995 ATTGACTATAACTTACAACGAGCAATA 57.188 29.630 0.00 0.00 0.00 1.90
337 338 9.811995 TTGACTATAACTTACAACGAGCAATAT 57.188 29.630 0.00 0.00 0.00 1.28
338 339 9.459640 TGACTATAACTTACAACGAGCAATATC 57.540 33.333 0.00 0.00 0.00 1.63
339 340 8.813643 ACTATAACTTACAACGAGCAATATCC 57.186 34.615 0.00 0.00 0.00 2.59
340 341 8.418662 ACTATAACTTACAACGAGCAATATCCA 58.581 33.333 0.00 0.00 0.00 3.41
341 342 9.256477 CTATAACTTACAACGAGCAATATCCAA 57.744 33.333 0.00 0.00 0.00 3.53
342 343 6.811253 AACTTACAACGAGCAATATCCAAA 57.189 33.333 0.00 0.00 0.00 3.28
343 344 6.811253 ACTTACAACGAGCAATATCCAAAA 57.189 33.333 0.00 0.00 0.00 2.44
344 345 7.209471 ACTTACAACGAGCAATATCCAAAAA 57.791 32.000 0.00 0.00 0.00 1.94
345 346 7.305474 ACTTACAACGAGCAATATCCAAAAAG 58.695 34.615 0.00 0.00 0.00 2.27
346 347 5.957842 ACAACGAGCAATATCCAAAAAGA 57.042 34.783 0.00 0.00 0.00 2.52
347 348 6.325919 ACAACGAGCAATATCCAAAAAGAA 57.674 33.333 0.00 0.00 0.00 2.52
348 349 6.744112 ACAACGAGCAATATCCAAAAAGAAA 58.256 32.000 0.00 0.00 0.00 2.52
349 350 7.206687 ACAACGAGCAATATCCAAAAAGAAAA 58.793 30.769 0.00 0.00 0.00 2.29
350 351 7.708752 ACAACGAGCAATATCCAAAAAGAAAAA 59.291 29.630 0.00 0.00 0.00 1.94
372 373 7.637709 AAAAGAAAATGAAAGCGGTTGATAC 57.362 32.000 0.00 0.00 0.00 2.24
373 374 5.310720 AGAAAATGAAAGCGGTTGATACC 57.689 39.130 0.00 0.00 41.33 2.73
382 383 3.065575 GGTTGATACCGAGTGCTGG 57.934 57.895 0.00 0.00 34.01 4.85
383 384 1.090052 GGTTGATACCGAGTGCTGGC 61.090 60.000 0.00 0.00 34.01 4.85
384 385 1.153647 TTGATACCGAGTGCTGGCG 60.154 57.895 0.00 0.00 0.00 5.69
385 386 2.962253 GATACCGAGTGCTGGCGC 60.962 66.667 0.00 0.00 0.00 6.53
386 387 3.716539 GATACCGAGTGCTGGCGCA 62.717 63.158 10.83 0.00 45.60 6.09
402 403 2.957657 CGCAAATCGCAATAGCAAAC 57.042 45.000 0.00 0.00 42.60 2.93
403 404 2.249337 CGCAAATCGCAATAGCAAACA 58.751 42.857 0.00 0.00 42.60 2.83
404 405 2.660715 CGCAAATCGCAATAGCAAACAA 59.339 40.909 0.00 0.00 42.60 2.83
405 406 3.241426 CGCAAATCGCAATAGCAAACAAG 60.241 43.478 0.00 0.00 42.60 3.16
406 407 3.482436 GCAAATCGCAATAGCAAACAAGC 60.482 43.478 0.00 0.00 42.27 4.01
407 408 3.574284 AATCGCAATAGCAAACAAGCA 57.426 38.095 0.00 0.00 42.27 3.91
408 409 3.788333 ATCGCAATAGCAAACAAGCAT 57.212 38.095 0.00 0.00 42.27 3.79
409 410 3.135414 TCGCAATAGCAAACAAGCATC 57.865 42.857 0.00 0.00 42.27 3.91
410 411 2.487372 TCGCAATAGCAAACAAGCATCA 59.513 40.909 0.00 0.00 42.27 3.07
411 412 3.057666 TCGCAATAGCAAACAAGCATCAA 60.058 39.130 0.00 0.00 42.27 2.57
412 413 3.674281 CGCAATAGCAAACAAGCATCAAA 59.326 39.130 0.00 0.00 42.27 2.69
413 414 4.201551 CGCAATAGCAAACAAGCATCAAAG 60.202 41.667 0.00 0.00 42.27 2.77
414 415 4.925054 GCAATAGCAAACAAGCATCAAAGA 59.075 37.500 0.00 0.00 41.58 2.52
415 416 5.164022 GCAATAGCAAACAAGCATCAAAGAC 60.164 40.000 0.00 0.00 41.58 3.01
416 417 5.710513 ATAGCAAACAAGCATCAAAGACA 57.289 34.783 0.00 0.00 36.85 3.41
417 418 4.389890 AGCAAACAAGCATCAAAGACAA 57.610 36.364 0.00 0.00 36.85 3.18
418 419 4.114794 AGCAAACAAGCATCAAAGACAAC 58.885 39.130 0.00 0.00 36.85 3.32
419 420 3.864583 GCAAACAAGCATCAAAGACAACA 59.135 39.130 0.00 0.00 0.00 3.33
420 421 4.329528 GCAAACAAGCATCAAAGACAACAA 59.670 37.500 0.00 0.00 0.00 2.83
421 422 5.501252 GCAAACAAGCATCAAAGACAACAAG 60.501 40.000 0.00 0.00 0.00 3.16
422 423 3.709987 ACAAGCATCAAAGACAACAAGC 58.290 40.909 0.00 0.00 0.00 4.01
423 424 3.054878 CAAGCATCAAAGACAACAAGCC 58.945 45.455 0.00 0.00 0.00 4.35
424 425 2.590821 AGCATCAAAGACAACAAGCCT 58.409 42.857 0.00 0.00 0.00 4.58
425 426 3.754965 AGCATCAAAGACAACAAGCCTA 58.245 40.909 0.00 0.00 0.00 3.93
426 427 3.503748 AGCATCAAAGACAACAAGCCTAC 59.496 43.478 0.00 0.00 0.00 3.18
427 428 3.503748 GCATCAAAGACAACAAGCCTACT 59.496 43.478 0.00 0.00 0.00 2.57
428 429 4.695455 GCATCAAAGACAACAAGCCTACTA 59.305 41.667 0.00 0.00 0.00 1.82
429 430 5.163814 GCATCAAAGACAACAAGCCTACTAG 60.164 44.000 0.00 0.00 0.00 2.57
430 431 5.546621 TCAAAGACAACAAGCCTACTAGT 57.453 39.130 0.00 0.00 0.00 2.57
431 432 6.659745 TCAAAGACAACAAGCCTACTAGTA 57.340 37.500 1.89 1.89 0.00 1.82
432 433 7.241042 TCAAAGACAACAAGCCTACTAGTAT 57.759 36.000 2.33 0.00 0.00 2.12
433 434 8.357290 TCAAAGACAACAAGCCTACTAGTATA 57.643 34.615 2.33 0.00 0.00 1.47
434 435 8.467598 TCAAAGACAACAAGCCTACTAGTATAG 58.532 37.037 2.33 0.00 46.50 1.31
435 436 6.394025 AGACAACAAGCCTACTAGTATAGC 57.606 41.667 14.34 14.34 44.39 2.97
436 437 6.130569 AGACAACAAGCCTACTAGTATAGCT 58.869 40.000 17.60 17.60 44.39 3.32
437 438 6.039941 AGACAACAAGCCTACTAGTATAGCTG 59.960 42.308 21.83 18.09 44.39 4.24
438 439 5.069251 ACAACAAGCCTACTAGTATAGCTGG 59.931 44.000 21.83 21.09 44.39 4.85
444 445 4.884247 CCTACTAGTATAGCTGGCCAAAC 58.116 47.826 7.01 1.16 44.39 2.93
445 446 3.454371 ACTAGTATAGCTGGCCAAACG 57.546 47.619 7.01 0.00 44.39 3.60
446 447 2.102588 ACTAGTATAGCTGGCCAAACGG 59.897 50.000 7.01 0.00 44.39 4.44
447 448 0.180406 AGTATAGCTGGCCAAACGGG 59.820 55.000 7.01 0.00 40.85 5.28
509 510 4.720902 CATGGGCCAGGCACGTCA 62.721 66.667 15.19 6.12 32.76 4.35
510 511 4.722700 ATGGGCCAGGCACGTCAC 62.723 66.667 15.19 0.00 32.76 3.67
520 521 3.152703 CACGTCACGGGCTAAACG 58.847 61.111 0.35 0.00 40.77 3.60
521 522 2.048877 ACGTCACGGGCTAAACGG 60.049 61.111 0.35 0.00 39.35 4.44
522 523 2.812178 CGTCACGGGCTAAACGGG 60.812 66.667 0.00 0.00 35.74 5.28
523 524 3.122971 GTCACGGGCTAAACGGGC 61.123 66.667 0.00 0.00 34.09 6.13
549 550 3.818787 GCATGCGGCACTCCTTGG 61.819 66.667 4.03 0.00 43.97 3.61
550 551 2.360350 CATGCGGCACTCCTTGGT 60.360 61.111 4.03 0.00 0.00 3.67
551 552 2.045926 ATGCGGCACTCCTTGGTC 60.046 61.111 4.03 0.00 0.00 4.02
552 553 3.628646 ATGCGGCACTCCTTGGTCC 62.629 63.158 4.03 0.00 0.00 4.46
554 555 4.003788 CGGCACTCCTTGGTCCGT 62.004 66.667 0.00 0.00 35.75 4.69
555 556 2.358737 GGCACTCCTTGGTCCGTG 60.359 66.667 0.00 0.00 0.00 4.94
556 557 3.050275 GCACTCCTTGGTCCGTGC 61.050 66.667 12.52 12.52 44.73 5.34
557 558 2.358737 CACTCCTTGGTCCGTGCC 60.359 66.667 0.00 0.00 0.00 5.01
558 559 2.526873 ACTCCTTGGTCCGTGCCT 60.527 61.111 0.00 0.00 0.00 4.75
559 560 1.229082 ACTCCTTGGTCCGTGCCTA 60.229 57.895 0.00 0.00 0.00 3.93
560 561 1.258445 ACTCCTTGGTCCGTGCCTAG 61.258 60.000 0.00 0.00 0.00 3.02
561 562 2.584608 CCTTGGTCCGTGCCTAGG 59.415 66.667 3.67 3.67 43.11 3.02
562 563 2.125106 CTTGGTCCGTGCCTAGGC 60.125 66.667 27.71 27.71 42.35 3.93
563 564 2.606519 TTGGTCCGTGCCTAGGCT 60.607 61.111 33.07 0.00 42.51 4.58
564 565 2.185310 CTTGGTCCGTGCCTAGGCTT 62.185 60.000 33.07 0.00 42.51 4.35
565 566 2.125106 GGTCCGTGCCTAGGCTTG 60.125 66.667 33.07 23.99 42.51 4.01
566 567 2.125106 GTCCGTGCCTAGGCTTGG 60.125 66.667 33.07 30.70 42.51 3.61
567 568 2.284331 TCCGTGCCTAGGCTTGGA 60.284 61.111 31.61 31.61 40.71 3.53
568 569 2.187946 CCGTGCCTAGGCTTGGAG 59.812 66.667 33.07 18.64 42.51 3.86
569 570 2.512515 CGTGCCTAGGCTTGGAGC 60.513 66.667 33.07 15.10 42.51 4.70
578 579 3.930504 GCTTGGAGCCTGGGAATG 58.069 61.111 0.00 0.00 34.48 2.67
579 580 2.421399 GCTTGGAGCCTGGGAATGC 61.421 63.158 0.00 0.00 34.48 3.56
580 581 1.000521 CTTGGAGCCTGGGAATGCA 60.001 57.895 0.00 0.00 0.00 3.96
581 582 1.000521 TTGGAGCCTGGGAATGCAG 60.001 57.895 0.00 0.00 0.00 4.41
582 583 2.123982 GGAGCCTGGGAATGCAGG 60.124 66.667 0.00 0.00 41.38 4.85
606 607 2.125024 CGGCCCGTCCCGTTTATT 60.125 61.111 0.00 0.00 43.24 1.40
607 608 1.746239 CGGCCCGTCCCGTTTATTT 60.746 57.895 0.00 0.00 43.24 1.40
608 609 1.307355 CGGCCCGTCCCGTTTATTTT 61.307 55.000 0.00 0.00 43.24 1.82
609 610 0.889994 GGCCCGTCCCGTTTATTTTT 59.110 50.000 0.00 0.00 0.00 1.94
678 679 6.601332 CCTAATAGGTCTAAAAATCAGCCCA 58.399 40.000 0.00 0.00 0.00 5.36
679 680 7.060421 CCTAATAGGTCTAAAAATCAGCCCAA 58.940 38.462 0.00 0.00 0.00 4.12
680 681 6.775594 AATAGGTCTAAAAATCAGCCCAAC 57.224 37.500 0.00 0.00 0.00 3.77
681 682 4.112634 AGGTCTAAAAATCAGCCCAACA 57.887 40.909 0.00 0.00 0.00 3.33
682 683 4.677182 AGGTCTAAAAATCAGCCCAACAT 58.323 39.130 0.00 0.00 0.00 2.71
683 684 4.463891 AGGTCTAAAAATCAGCCCAACATG 59.536 41.667 0.00 0.00 0.00 3.21
684 685 4.176271 GTCTAAAAATCAGCCCAACATGC 58.824 43.478 0.00 0.00 0.00 4.06
685 686 4.082026 GTCTAAAAATCAGCCCAACATGCT 60.082 41.667 0.00 0.00 40.41 3.79
692 693 2.754946 AGCCCAACATGCTGAAAATG 57.245 45.000 0.00 0.00 37.76 2.32
693 694 1.972795 AGCCCAACATGCTGAAAATGT 59.027 42.857 0.00 0.00 39.95 2.71
694 695 2.070783 GCCCAACATGCTGAAAATGTG 58.929 47.619 0.00 0.00 38.27 3.21
695 696 2.070783 CCCAACATGCTGAAAATGTGC 58.929 47.619 0.00 0.00 38.27 4.57
696 697 2.548280 CCCAACATGCTGAAAATGTGCA 60.548 45.455 0.00 0.00 38.27 4.57
697 698 2.734606 CCAACATGCTGAAAATGTGCAG 59.265 45.455 0.00 0.00 38.27 4.41
703 704 1.787012 CTGAAAATGTGCAGCCCAAC 58.213 50.000 0.00 0.00 0.00 3.77
704 705 0.031857 TGAAAATGTGCAGCCCAACG 59.968 50.000 0.00 0.00 0.00 4.10
705 706 0.031994 GAAAATGTGCAGCCCAACGT 59.968 50.000 0.00 0.00 0.00 3.99
706 707 0.249405 AAAATGTGCAGCCCAACGTG 60.249 50.000 0.00 0.00 0.00 4.49
707 708 2.697992 AAATGTGCAGCCCAACGTGC 62.698 55.000 0.00 0.00 40.29 5.34
708 709 4.873810 TGTGCAGCCCAACGTGCT 62.874 61.111 0.00 0.00 40.54 4.40
709 710 2.668212 GTGCAGCCCAACGTGCTA 60.668 61.111 0.00 0.00 40.54 3.49
710 711 2.112087 TGCAGCCCAACGTGCTAA 59.888 55.556 0.00 0.00 40.54 3.09
711 712 2.258013 TGCAGCCCAACGTGCTAAC 61.258 57.895 0.00 0.00 40.54 2.34
712 713 2.978018 GCAGCCCAACGTGCTAACC 61.978 63.158 0.00 0.00 36.81 2.85
713 714 2.358247 AGCCCAACGTGCTAACCG 60.358 61.111 0.00 0.00 37.28 4.44
714 715 3.428282 GCCCAACGTGCTAACCGG 61.428 66.667 0.00 0.00 0.00 5.28
715 716 2.744709 CCCAACGTGCTAACCGGG 60.745 66.667 6.32 0.00 0.00 5.73
716 717 3.428282 CCAACGTGCTAACCGGGC 61.428 66.667 6.32 0.00 0.00 6.13
717 718 3.428282 CAACGTGCTAACCGGGCC 61.428 66.667 6.32 0.00 0.00 5.80
718 719 3.943691 AACGTGCTAACCGGGCCA 61.944 61.111 6.32 0.00 0.00 5.36
719 720 3.479127 AACGTGCTAACCGGGCCAA 62.479 57.895 6.32 0.00 0.00 4.52
720 721 3.428282 CGTGCTAACCGGGCCAAC 61.428 66.667 6.32 0.00 0.00 3.77
721 722 2.281900 GTGCTAACCGGGCCAACA 60.282 61.111 6.32 0.00 0.00 3.33
722 723 1.677633 GTGCTAACCGGGCCAACAT 60.678 57.895 6.32 0.00 0.00 2.71
723 724 1.677300 TGCTAACCGGGCCAACATG 60.677 57.895 6.32 0.00 0.00 3.21
724 725 3.063743 GCTAACCGGGCCAACATGC 62.064 63.158 6.32 0.00 0.00 4.06
734 735 3.679738 CAACATGCCGGCCCGTTT 61.680 61.111 26.77 9.04 0.00 3.60
735 736 2.034376 AACATGCCGGCCCGTTTA 59.966 55.556 26.77 3.54 0.00 2.01
736 737 2.337246 AACATGCCGGCCCGTTTAC 61.337 57.895 26.77 0.00 0.00 2.01
737 738 2.437716 CATGCCGGCCCGTTTACT 60.438 61.111 26.77 0.00 0.00 2.24
738 739 1.153329 CATGCCGGCCCGTTTACTA 60.153 57.895 26.77 0.73 0.00 1.82
739 740 0.745128 CATGCCGGCCCGTTTACTAA 60.745 55.000 26.77 0.00 0.00 2.24
740 741 0.745486 ATGCCGGCCCGTTTACTAAC 60.745 55.000 26.77 0.00 0.00 2.34
741 742 1.078918 GCCGGCCCGTTTACTAACT 60.079 57.895 18.11 0.00 31.89 2.24
742 743 0.175531 GCCGGCCCGTTTACTAACTA 59.824 55.000 18.11 0.00 31.89 2.24
743 744 1.803998 GCCGGCCCGTTTACTAACTAG 60.804 57.143 18.11 0.00 31.89 2.57
744 745 1.202452 CCGGCCCGTTTACTAACTAGG 60.202 57.143 0.85 0.00 31.89 3.02
745 746 1.803998 CGGCCCGTTTACTAACTAGGC 60.804 57.143 0.00 9.26 44.42 3.93
746 747 1.945387 GCCCGTTTACTAACTAGGCC 58.055 55.000 0.00 0.00 41.71 5.19
747 748 1.803998 GCCCGTTTACTAACTAGGCCG 60.804 57.143 0.00 0.00 41.71 6.13
748 749 1.478105 CCCGTTTACTAACTAGGCCGT 59.522 52.381 0.00 0.00 31.89 5.68
749 750 2.533266 CCGTTTACTAACTAGGCCGTG 58.467 52.381 0.00 0.00 31.89 4.94
750 751 1.922545 CGTTTACTAACTAGGCCGTGC 59.077 52.381 0.00 0.00 31.89 5.34
751 752 3.303696 CGTTTACTAACTAGGCCGTGCC 61.304 54.545 6.80 6.80 39.47 5.01
761 762 4.733542 GCCGTGCCTGGGCCTAAA 62.734 66.667 4.53 0.00 44.97 1.85
762 763 2.438434 CCGTGCCTGGGCCTAAAG 60.438 66.667 4.53 0.00 41.09 1.85
763 764 2.438434 CGTGCCTGGGCCTAAAGG 60.438 66.667 4.53 13.50 41.09 3.11
783 784 3.434319 CAGCATGTGGGCCGACAC 61.434 66.667 23.95 14.03 41.68 3.67
818 819 3.136123 CCGTGCCAGGCCAGAATG 61.136 66.667 9.64 0.00 0.00 2.67
829 830 4.096003 CAGAATGGGCCGGGTCGT 62.096 66.667 2.18 0.00 0.00 4.34
843 844 4.323477 TCGTCCCGTTTGGCCAGG 62.323 66.667 5.11 3.46 0.00 4.45
845 846 2.671963 GTCCCGTTTGGCCAGGTC 60.672 66.667 5.11 0.00 0.00 3.85
848 849 3.365265 CCGTTTGGCCAGGTCTGC 61.365 66.667 5.11 0.00 0.00 4.26
850 851 2.328099 CGTTTGGCCAGGTCTGCTC 61.328 63.158 5.11 0.00 0.00 4.26
851 852 1.973812 GTTTGGCCAGGTCTGCTCC 60.974 63.158 5.11 0.00 0.00 4.70
852 853 2.459969 TTTGGCCAGGTCTGCTCCA 61.460 57.895 5.11 6.23 32.54 3.86
853 854 2.005606 TTTGGCCAGGTCTGCTCCAA 62.006 55.000 5.11 14.45 38.75 3.53
854 855 1.792757 TTGGCCAGGTCTGCTCCAAT 61.793 55.000 5.11 0.00 37.04 3.16
855 856 1.751927 GGCCAGGTCTGCTCCAATG 60.752 63.158 0.00 0.00 0.00 2.82
856 857 1.300963 GCCAGGTCTGCTCCAATGA 59.699 57.895 0.00 0.00 0.00 2.57
877 878 4.766891 TGAAGTTGCCCTAAGGAAATGAAG 59.233 41.667 0.00 0.00 31.32 3.02
896 900 1.489230 AGTGAACTGTTCTTTCCCCGT 59.511 47.619 20.18 0.00 0.00 5.28
907 911 1.710996 TTTCCCCGTTTGGCCTCTCA 61.711 55.000 3.32 0.00 0.00 3.27
910 914 1.376037 CCCGTTTGGCCTCTCACTC 60.376 63.158 3.32 0.00 0.00 3.51
1263 9388 3.118920 TGGATTCCTGCGATTTCGACTTA 60.119 43.478 3.77 0.00 43.02 2.24
1533 9664 0.111704 CTTGCGACGTCGTTGTCAAG 60.112 55.000 35.48 31.53 42.22 3.02
1828 10034 2.091665 CCTGAACATGGGCCTCCTTATT 60.092 50.000 4.53 0.00 0.00 1.40
1869 10075 2.872245 TCTCAAAGGTTTGTCAGAAGCG 59.128 45.455 2.49 0.00 39.18 4.68
1916 10127 5.781210 TCTGATGTGGTATGTTTGCAAAA 57.219 34.783 14.67 5.00 0.00 2.44
1917 10128 6.343716 TCTGATGTGGTATGTTTGCAAAAT 57.656 33.333 14.67 11.94 0.00 1.82
2067 10306 6.184789 TGTACTTCAAAGGTCAAAAGGTTCT 58.815 36.000 0.00 0.00 0.00 3.01
2084 10323 5.196695 AGGTTCTTAATTTGATCCAGCTCC 58.803 41.667 9.47 0.00 0.00 4.70
2306 10554 7.148323 TGTGTATCATTTAAAATGACCGTCCAG 60.148 37.037 0.00 0.00 0.00 3.86
2396 10670 1.604604 ACAAACCATTGGGACAGTCG 58.395 50.000 7.78 0.00 42.39 4.18
2582 10856 6.233905 TGGCACTCTTCATGCTACTTATTA 57.766 37.500 0.00 0.00 42.93 0.98
2585 10859 6.201806 GGCACTCTTCATGCTACTTATTACTG 59.798 42.308 0.00 0.00 42.93 2.74
2588 10862 8.598924 CACTCTTCATGCTACTTATTACTGTTG 58.401 37.037 0.00 0.00 0.00 3.33
2589 10863 7.766278 ACTCTTCATGCTACTTATTACTGTTGG 59.234 37.037 0.00 0.00 0.00 3.77
2590 10864 6.538742 TCTTCATGCTACTTATTACTGTTGGC 59.461 38.462 0.00 0.00 0.00 4.52
2591 10865 5.739959 TCATGCTACTTATTACTGTTGGCA 58.260 37.500 0.00 0.00 0.00 4.92
2592 10866 5.584649 TCATGCTACTTATTACTGTTGGCAC 59.415 40.000 0.00 0.00 31.10 5.01
2594 10868 5.175859 TGCTACTTATTACTGTTGGCACTC 58.824 41.667 0.00 0.00 0.00 3.51
2597 10871 6.036191 GCTACTTATTACTGTTGGCACTCTTC 59.964 42.308 0.00 0.00 0.00 2.87
2601 10875 1.242076 ACTGTTGGCACTCTTCATGC 58.758 50.000 0.00 0.00 42.62 4.06
2731 11181 4.408921 TGAAGAGAAAGTGAAAGACAGGGA 59.591 41.667 0.00 0.00 0.00 4.20
2732 11182 5.072329 TGAAGAGAAAGTGAAAGACAGGGAT 59.928 40.000 0.00 0.00 0.00 3.85
2733 11183 4.904241 AGAGAAAGTGAAAGACAGGGATG 58.096 43.478 0.00 0.00 0.00 3.51
2734 11184 4.349342 AGAGAAAGTGAAAGACAGGGATGT 59.651 41.667 0.00 0.00 0.00 3.06
2735 11185 5.544176 AGAGAAAGTGAAAGACAGGGATGTA 59.456 40.000 0.00 0.00 0.00 2.29
2736 11186 5.552178 AGAAAGTGAAAGACAGGGATGTAC 58.448 41.667 0.00 0.00 0.00 2.90
2748 11198 4.653801 ACAGGGATGTACATGTACTGCATA 59.346 41.667 30.69 14.96 35.74 3.14
2993 11804 7.380065 GTCATCTAGATCCTTTACAAACTAGCG 59.620 40.741 1.03 0.00 0.00 4.26
3088 11900 3.070018 GCTGACAGCTCACAACAACTAT 58.930 45.455 20.41 0.00 38.45 2.12
3117 11929 8.348507 TGTCAATGATTTTGGCAAATTTTAACC 58.651 29.630 14.29 0.00 32.35 2.85
3168 11988 6.202762 TGAATCCTGTTATGTGCGATTACATC 59.797 38.462 4.06 0.00 41.31 3.06
3448 12279 9.303116 GAGGTATGAAGATCTGGACTATTCTTA 57.697 37.037 0.00 0.00 0.00 2.10
3449 12280 9.308000 AGGTATGAAGATCTGGACTATTCTTAG 57.692 37.037 0.00 0.00 0.00 2.18
3450 12281 9.303116 GGTATGAAGATCTGGACTATTCTTAGA 57.697 37.037 0.00 0.00 0.00 2.10
3511 12344 4.797471 CACATTTTGGGTAGTGATGTGTG 58.203 43.478 6.61 0.00 41.45 3.82
3590 12541 5.296780 TCTTCTTCAATGCAACTCTTTTCGT 59.703 36.000 0.00 0.00 0.00 3.85
3792 12750 7.928307 AATAATTGAAGCACATCACTACAGT 57.072 32.000 0.00 0.00 0.00 3.55
3953 13378 4.881273 TGGTCTTATGCGCTGAAAATATGT 59.119 37.500 9.73 0.00 0.00 2.29
4010 13435 4.513692 TGGAATGAACTCAACAAACTACCG 59.486 41.667 0.00 0.00 0.00 4.02
4027 13452 0.803768 CCGAACAGCTGATCGACAGG 60.804 60.000 38.19 22.44 45.82 4.00
4111 13539 2.161012 TGTAGCTAGGAAAGTCGACACG 59.839 50.000 19.50 0.00 0.00 4.49
4116 13544 2.589798 AGGAAAGTCGACACGTCAAA 57.410 45.000 19.50 0.00 0.00 2.69
4117 13545 2.470821 AGGAAAGTCGACACGTCAAAG 58.529 47.619 19.50 0.00 0.00 2.77
4185 13614 3.005155 GCATTGCTACCTTTCCATCCATC 59.995 47.826 0.16 0.00 0.00 3.51
4228 13658 7.060421 AGTTAACTCTCCAATCCTCAAAACAA 58.940 34.615 1.12 0.00 0.00 2.83
4265 13695 2.202295 TTTTCAGCGGCAGTCAAAAC 57.798 45.000 1.45 0.00 0.00 2.43
4270 13700 1.267806 CAGCGGCAGTCAAAACTCATT 59.732 47.619 1.45 0.00 31.71 2.57
4283 13713 6.219302 CAAAACTCATTCATGGTTTTGAGC 57.781 37.500 24.52 0.00 46.84 4.26
4293 13723 2.031120 TGGTTTTGAGCAGGTGAAAGG 58.969 47.619 0.00 0.00 0.00 3.11
4395 13825 8.730680 ACTCTCGTGTTTCTTATTTAAATGCAT 58.269 29.630 11.05 0.00 0.00 3.96
4396 13826 8.894409 TCTCGTGTTTCTTATTTAAATGCATG 57.106 30.769 11.05 5.98 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.994421 ACCAAAGGACACCAAAGAAATATT 57.006 33.333 0.00 0.00 0.00 1.28
3 4 5.692115 AAACCAAAGGACACCAAAGAAAT 57.308 34.783 0.00 0.00 0.00 2.17
6 7 3.835395 ACAAAACCAAAGGACACCAAAGA 59.165 39.130 0.00 0.00 0.00 2.52
7 8 4.200838 ACAAAACCAAAGGACACCAAAG 57.799 40.909 0.00 0.00 0.00 2.77
8 9 4.160626 CCTACAAAACCAAAGGACACCAAA 59.839 41.667 0.00 0.00 0.00 3.28
9 10 3.702045 CCTACAAAACCAAAGGACACCAA 59.298 43.478 0.00 0.00 0.00 3.67
10 11 3.053544 TCCTACAAAACCAAAGGACACCA 60.054 43.478 0.00 0.00 33.18 4.17
11 12 3.558033 TCCTACAAAACCAAAGGACACC 58.442 45.455 0.00 0.00 33.18 4.16
12 13 5.300792 TCATTCCTACAAAACCAAAGGACAC 59.699 40.000 0.00 0.00 37.86 3.67
13 14 5.450453 TCATTCCTACAAAACCAAAGGACA 58.550 37.500 0.00 0.00 37.86 4.02
14 15 5.535030 ACTCATTCCTACAAAACCAAAGGAC 59.465 40.000 0.00 0.00 37.86 3.85
15 16 5.701224 ACTCATTCCTACAAAACCAAAGGA 58.299 37.500 0.00 0.00 36.34 3.36
16 17 6.405278 AACTCATTCCTACAAAACCAAAGG 57.595 37.500 0.00 0.00 0.00 3.11
39 40 9.892444 TGGTTTCTATCATACTTAGGAATAGGA 57.108 33.333 0.00 0.00 0.00 2.94
44 45 9.225682 AGGATTGGTTTCTATCATACTTAGGAA 57.774 33.333 0.00 0.00 0.00 3.36
45 46 8.798975 AGGATTGGTTTCTATCATACTTAGGA 57.201 34.615 0.00 0.00 0.00 2.94
54 55 9.973661 TCTTTGAATTAGGATTGGTTTCTATCA 57.026 29.630 0.00 0.00 0.00 2.15
77 78 9.099454 CGAGTCTAGCCTAATGTTATTTTTCTT 57.901 33.333 0.00 0.00 0.00 2.52
78 79 7.711339 CCGAGTCTAGCCTAATGTTATTTTTCT 59.289 37.037 0.00 0.00 0.00 2.52
79 80 7.494952 ACCGAGTCTAGCCTAATGTTATTTTTC 59.505 37.037 0.00 0.00 0.00 2.29
80 81 7.336396 ACCGAGTCTAGCCTAATGTTATTTTT 58.664 34.615 0.00 0.00 0.00 1.94
81 82 6.885922 ACCGAGTCTAGCCTAATGTTATTTT 58.114 36.000 0.00 0.00 0.00 1.82
82 83 6.481434 ACCGAGTCTAGCCTAATGTTATTT 57.519 37.500 0.00 0.00 0.00 1.40
83 84 6.097839 TCAACCGAGTCTAGCCTAATGTTATT 59.902 38.462 0.00 0.00 0.00 1.40
84 85 5.597182 TCAACCGAGTCTAGCCTAATGTTAT 59.403 40.000 0.00 0.00 0.00 1.89
85 86 4.951715 TCAACCGAGTCTAGCCTAATGTTA 59.048 41.667 0.00 0.00 0.00 2.41
86 87 3.767673 TCAACCGAGTCTAGCCTAATGTT 59.232 43.478 0.00 0.00 0.00 2.71
87 88 3.362706 TCAACCGAGTCTAGCCTAATGT 58.637 45.455 0.00 0.00 0.00 2.71
88 89 4.386867 TTCAACCGAGTCTAGCCTAATG 57.613 45.455 0.00 0.00 0.00 1.90
89 90 5.416271 TTTTCAACCGAGTCTAGCCTAAT 57.584 39.130 0.00 0.00 0.00 1.73
90 91 4.877378 TTTTCAACCGAGTCTAGCCTAA 57.123 40.909 0.00 0.00 0.00 2.69
91 92 4.877378 TTTTTCAACCGAGTCTAGCCTA 57.123 40.909 0.00 0.00 0.00 3.93
92 93 3.764237 TTTTTCAACCGAGTCTAGCCT 57.236 42.857 0.00 0.00 0.00 4.58
93 94 4.454504 TGAATTTTTCAACCGAGTCTAGCC 59.545 41.667 0.00 0.00 36.59 3.93
94 95 5.607119 TGAATTTTTCAACCGAGTCTAGC 57.393 39.130 0.00 0.00 36.59 3.42
95 96 9.098355 TGATATGAATTTTTCAACCGAGTCTAG 57.902 33.333 0.00 0.00 43.95 2.43
96 97 9.613428 ATGATATGAATTTTTCAACCGAGTCTA 57.387 29.630 0.00 0.00 43.95 2.59
97 98 7.921786 TGATATGAATTTTTCAACCGAGTCT 57.078 32.000 0.00 0.00 43.95 3.24
98 99 8.184192 ACATGATATGAATTTTTCAACCGAGTC 58.816 33.333 0.00 0.00 43.95 3.36
99 100 7.970061 CACATGATATGAATTTTTCAACCGAGT 59.030 33.333 0.00 0.00 43.95 4.18
100 101 7.043854 GCACATGATATGAATTTTTCAACCGAG 60.044 37.037 0.00 0.00 43.95 4.63
101 102 6.751425 GCACATGATATGAATTTTTCAACCGA 59.249 34.615 0.00 0.00 43.95 4.69
102 103 6.530887 TGCACATGATATGAATTTTTCAACCG 59.469 34.615 0.00 0.00 43.95 4.44
103 104 7.830940 TGCACATGATATGAATTTTTCAACC 57.169 32.000 0.00 0.00 43.95 3.77
104 105 9.089601 TGATGCACATGATATGAATTTTTCAAC 57.910 29.630 0.00 0.00 43.95 3.18
105 106 9.654663 TTGATGCACATGATATGAATTTTTCAA 57.345 25.926 0.00 0.00 43.95 2.69
106 107 9.654663 TTTGATGCACATGATATGAATTTTTCA 57.345 25.926 0.00 0.00 45.01 2.69
109 110 9.825109 TCATTTGATGCACATGATATGAATTTT 57.175 25.926 0.00 0.00 27.46 1.82
110 111 9.256477 GTCATTTGATGCACATGATATGAATTT 57.744 29.630 0.00 0.00 33.93 1.82
111 112 8.417884 TGTCATTTGATGCACATGATATGAATT 58.582 29.630 0.00 0.00 33.93 2.17
112 113 7.947282 TGTCATTTGATGCACATGATATGAAT 58.053 30.769 0.00 0.00 33.93 2.57
113 114 7.336161 TGTCATTTGATGCACATGATATGAA 57.664 32.000 0.00 0.00 33.93 2.57
114 115 6.945938 TGTCATTTGATGCACATGATATGA 57.054 33.333 0.00 0.53 33.93 2.15
115 116 7.593825 AGATGTCATTTGATGCACATGATATG 58.406 34.615 0.00 0.00 34.33 1.78
116 117 7.665974 AGAGATGTCATTTGATGCACATGATAT 59.334 33.333 0.00 5.78 35.93 1.63
117 118 6.996282 AGAGATGTCATTTGATGCACATGATA 59.004 34.615 0.00 0.00 33.93 2.15
118 119 5.828328 AGAGATGTCATTTGATGCACATGAT 59.172 36.000 0.00 0.00 33.93 2.45
119 120 5.190677 AGAGATGTCATTTGATGCACATGA 58.809 37.500 0.00 0.00 33.94 3.07
120 121 5.500645 AGAGATGTCATTTGATGCACATG 57.499 39.130 0.00 0.00 33.94 3.21
121 122 6.405508 GGAAAGAGATGTCATTTGATGCACAT 60.406 38.462 0.00 6.02 35.35 3.21
122 123 5.106038 GGAAAGAGATGTCATTTGATGCACA 60.106 40.000 0.00 0.00 0.00 4.57
123 124 5.338365 GGAAAGAGATGTCATTTGATGCAC 58.662 41.667 0.00 0.00 0.00 4.57
124 125 4.400251 GGGAAAGAGATGTCATTTGATGCA 59.600 41.667 0.00 0.00 0.00 3.96
125 126 4.643784 AGGGAAAGAGATGTCATTTGATGC 59.356 41.667 0.00 0.00 0.00 3.91
126 127 5.651139 ACAGGGAAAGAGATGTCATTTGATG 59.349 40.000 0.00 0.00 0.00 3.07
127 128 5.824421 ACAGGGAAAGAGATGTCATTTGAT 58.176 37.500 0.00 0.00 0.00 2.57
128 129 5.246981 ACAGGGAAAGAGATGTCATTTGA 57.753 39.130 0.00 0.00 0.00 2.69
129 130 5.065731 GCTACAGGGAAAGAGATGTCATTTG 59.934 44.000 0.00 0.00 0.00 2.32
130 131 5.189180 GCTACAGGGAAAGAGATGTCATTT 58.811 41.667 0.00 0.00 0.00 2.32
131 132 4.225942 TGCTACAGGGAAAGAGATGTCATT 59.774 41.667 0.00 0.00 0.00 2.57
132 133 3.776969 TGCTACAGGGAAAGAGATGTCAT 59.223 43.478 0.00 0.00 0.00 3.06
133 134 3.173151 TGCTACAGGGAAAGAGATGTCA 58.827 45.455 0.00 0.00 0.00 3.58
134 135 3.895232 TGCTACAGGGAAAGAGATGTC 57.105 47.619 0.00 0.00 0.00 3.06
135 136 4.851639 ATTGCTACAGGGAAAGAGATGT 57.148 40.909 0.00 0.00 0.00 3.06
136 137 5.188434 TCAATTGCTACAGGGAAAGAGATG 58.812 41.667 0.00 0.00 0.00 2.90
137 138 5.190528 TCTCAATTGCTACAGGGAAAGAGAT 59.809 40.000 0.00 0.00 36.44 2.75
138 139 4.532126 TCTCAATTGCTACAGGGAAAGAGA 59.468 41.667 0.00 0.00 37.77 3.10
139 140 4.836825 TCTCAATTGCTACAGGGAAAGAG 58.163 43.478 0.00 0.00 34.94 2.85
140 141 4.908601 TCTCAATTGCTACAGGGAAAGA 57.091 40.909 0.00 0.00 0.00 2.52
141 142 6.115446 TGTATCTCAATTGCTACAGGGAAAG 58.885 40.000 0.00 0.00 0.00 2.62
142 143 6.061022 TGTATCTCAATTGCTACAGGGAAA 57.939 37.500 0.00 0.00 0.00 3.13
143 144 5.692115 TGTATCTCAATTGCTACAGGGAA 57.308 39.130 0.00 0.00 0.00 3.97
144 145 5.130975 ACATGTATCTCAATTGCTACAGGGA 59.869 40.000 20.78 0.00 31.96 4.20
145 146 5.371526 ACATGTATCTCAATTGCTACAGGG 58.628 41.667 20.78 15.93 31.96 4.45
146 147 6.051074 TGACATGTATCTCAATTGCTACAGG 58.949 40.000 17.77 17.77 33.43 4.00
147 148 7.656542 AGATGACATGTATCTCAATTGCTACAG 59.343 37.037 0.00 11.83 29.05 2.74
148 149 7.503549 AGATGACATGTATCTCAATTGCTACA 58.496 34.615 0.00 13.92 29.05 2.74
149 150 7.148836 CGAGATGACATGTATCTCAATTGCTAC 60.149 40.741 26.92 3.48 46.94 3.58
150 151 6.865205 CGAGATGACATGTATCTCAATTGCTA 59.135 38.462 26.92 0.00 46.94 3.49
151 152 5.695363 CGAGATGACATGTATCTCAATTGCT 59.305 40.000 26.92 10.55 46.94 3.91
152 153 5.614231 GCGAGATGACATGTATCTCAATTGC 60.614 44.000 26.92 21.79 46.94 3.56
153 154 5.695363 AGCGAGATGACATGTATCTCAATTG 59.305 40.000 26.92 18.64 46.94 2.32
154 155 5.851720 AGCGAGATGACATGTATCTCAATT 58.148 37.500 26.92 17.10 46.94 2.32
155 156 5.465532 AGCGAGATGACATGTATCTCAAT 57.534 39.130 26.92 18.82 46.94 2.57
156 157 4.926140 AGCGAGATGACATGTATCTCAA 57.074 40.909 26.92 5.28 46.94 3.02
157 158 4.926140 AAGCGAGATGACATGTATCTCA 57.074 40.909 26.92 13.76 46.94 3.27
158 159 9.018716 CATAATAAGCGAGATGACATGTATCTC 57.981 37.037 22.47 22.47 44.46 2.75
159 160 8.743714 TCATAATAAGCGAGATGACATGTATCT 58.256 33.333 14.05 14.05 37.59 1.98
160 161 8.917415 TCATAATAAGCGAGATGACATGTATC 57.083 34.615 0.00 2.87 0.00 2.24
161 162 9.881649 AATCATAATAAGCGAGATGACATGTAT 57.118 29.630 0.00 0.00 31.41 2.29
162 163 9.710900 AAATCATAATAAGCGAGATGACATGTA 57.289 29.630 0.00 0.00 31.41 2.29
163 164 8.613060 AAATCATAATAAGCGAGATGACATGT 57.387 30.769 0.00 0.00 31.41 3.21
164 165 9.539139 GAAAATCATAATAAGCGAGATGACATG 57.461 33.333 0.00 0.00 31.41 3.21
165 166 8.725148 GGAAAATCATAATAAGCGAGATGACAT 58.275 33.333 0.00 0.00 31.41 3.06
166 167 7.933577 AGGAAAATCATAATAAGCGAGATGACA 59.066 33.333 0.00 0.00 31.41 3.58
167 168 8.316640 AGGAAAATCATAATAAGCGAGATGAC 57.683 34.615 0.00 0.00 31.41 3.06
171 172 9.436957 GGAATAGGAAAATCATAATAAGCGAGA 57.563 33.333 0.00 0.00 0.00 4.04
172 173 9.442047 AGGAATAGGAAAATCATAATAAGCGAG 57.558 33.333 0.00 0.00 0.00 5.03
206 207 9.857656 AGGCTTTCTTTGATTCATAAGATATGA 57.142 29.630 10.20 0.00 31.00 2.15
209 210 8.830580 CGAAGGCTTTCTTTGATTCATAAGATA 58.169 33.333 0.00 6.75 38.82 1.98
210 211 7.337942 ACGAAGGCTTTCTTTGATTCATAAGAT 59.662 33.333 0.00 0.00 38.82 2.40
211 212 6.655003 ACGAAGGCTTTCTTTGATTCATAAGA 59.345 34.615 0.00 7.00 38.82 2.10
212 213 6.846350 ACGAAGGCTTTCTTTGATTCATAAG 58.154 36.000 0.00 0.00 38.82 1.73
213 214 6.817765 ACGAAGGCTTTCTTTGATTCATAA 57.182 33.333 0.00 0.00 38.82 1.90
214 215 7.103641 ACTACGAAGGCTTTCTTTGATTCATA 58.896 34.615 0.00 0.00 38.82 2.15
215 216 5.940470 ACTACGAAGGCTTTCTTTGATTCAT 59.060 36.000 0.00 0.00 38.82 2.57
216 217 5.305585 ACTACGAAGGCTTTCTTTGATTCA 58.694 37.500 0.00 0.00 38.82 2.57
217 218 5.864628 ACTACGAAGGCTTTCTTTGATTC 57.135 39.130 0.00 0.00 38.82 2.52
218 219 7.923414 ATTACTACGAAGGCTTTCTTTGATT 57.077 32.000 0.00 0.00 38.82 2.57
219 220 9.614792 ATTATTACTACGAAGGCTTTCTTTGAT 57.385 29.630 0.00 0.00 38.82 2.57
226 227 9.420551 GCATAGTATTATTACTACGAAGGCTTT 57.579 33.333 0.00 0.00 42.31 3.51
227 228 8.582437 TGCATAGTATTATTACTACGAAGGCTT 58.418 33.333 0.00 0.00 42.31 4.35
228 229 8.118976 TGCATAGTATTATTACTACGAAGGCT 57.881 34.615 6.65 0.00 42.31 4.58
229 230 8.645487 GTTGCATAGTATTATTACTACGAAGGC 58.355 37.037 6.65 2.08 42.31 4.35
230 231 9.687210 TGTTGCATAGTATTATTACTACGAAGG 57.313 33.333 6.65 0.00 42.31 3.46
250 251 9.410556 GCTTTCTCTCTAATTTATTTTGTTGCA 57.589 29.630 0.00 0.00 0.00 4.08
251 252 9.631452 AGCTTTCTCTCTAATTTATTTTGTTGC 57.369 29.630 0.00 0.00 0.00 4.17
254 255 9.436957 TCGAGCTTTCTCTCTAATTTATTTTGT 57.563 29.630 0.00 0.00 37.19 2.83
255 256 9.913451 CTCGAGCTTTCTCTCTAATTTATTTTG 57.087 33.333 0.00 0.00 37.19 2.44
256 257 9.877178 TCTCGAGCTTTCTCTCTAATTTATTTT 57.123 29.630 7.81 0.00 37.19 1.82
258 259 9.474920 CATCTCGAGCTTTCTCTCTAATTTATT 57.525 33.333 7.81 0.00 37.19 1.40
259 260 8.855110 TCATCTCGAGCTTTCTCTCTAATTTAT 58.145 33.333 7.81 0.00 37.19 1.40
260 261 8.226819 TCATCTCGAGCTTTCTCTCTAATTTA 57.773 34.615 7.81 0.00 37.19 1.40
261 262 7.106439 TCATCTCGAGCTTTCTCTCTAATTT 57.894 36.000 7.81 0.00 37.19 1.82
262 263 6.321181 ACTCATCTCGAGCTTTCTCTCTAATT 59.679 38.462 7.81 0.00 46.63 1.40
263 264 5.827797 ACTCATCTCGAGCTTTCTCTCTAAT 59.172 40.000 7.81 0.00 46.63 1.73
264 265 5.189928 ACTCATCTCGAGCTTTCTCTCTAA 58.810 41.667 7.81 0.00 46.63 2.10
265 266 4.776349 ACTCATCTCGAGCTTTCTCTCTA 58.224 43.478 7.81 0.00 46.63 2.43
266 267 3.620488 ACTCATCTCGAGCTTTCTCTCT 58.380 45.455 7.81 0.00 46.63 3.10
267 268 3.243068 GGACTCATCTCGAGCTTTCTCTC 60.243 52.174 7.81 0.00 46.63 3.20
268 269 2.687935 GGACTCATCTCGAGCTTTCTCT 59.312 50.000 7.81 0.00 46.63 3.10
269 270 2.540769 CGGACTCATCTCGAGCTTTCTC 60.541 54.545 7.81 0.00 46.63 2.87
270 271 1.403679 CGGACTCATCTCGAGCTTTCT 59.596 52.381 7.81 0.00 46.63 2.52
271 272 1.402259 TCGGACTCATCTCGAGCTTTC 59.598 52.381 7.81 0.00 46.63 2.62
272 273 1.133407 GTCGGACTCATCTCGAGCTTT 59.867 52.381 7.81 0.00 46.63 3.51
273 274 0.736053 GTCGGACTCATCTCGAGCTT 59.264 55.000 7.81 0.00 46.63 3.74
274 275 0.107410 AGTCGGACTCATCTCGAGCT 60.107 55.000 7.81 0.00 46.63 4.09
275 276 0.736053 AAGTCGGACTCATCTCGAGC 59.264 55.000 11.71 0.00 46.63 5.03
277 278 2.433436 TCAAAGTCGGACTCATCTCGA 58.567 47.619 11.71 0.00 0.00 4.04
278 279 2.921634 TCAAAGTCGGACTCATCTCG 57.078 50.000 11.71 0.00 0.00 4.04
279 280 7.778470 ATTAATTCAAAGTCGGACTCATCTC 57.222 36.000 11.71 0.00 0.00 2.75
280 281 9.667107 TTTATTAATTCAAAGTCGGACTCATCT 57.333 29.630 11.71 0.00 0.00 2.90
281 282 9.922305 CTTTATTAATTCAAAGTCGGACTCATC 57.078 33.333 11.71 0.00 0.00 2.92
282 283 8.398665 GCTTTATTAATTCAAAGTCGGACTCAT 58.601 33.333 11.71 0.65 34.82 2.90
283 284 7.148306 GGCTTTATTAATTCAAAGTCGGACTCA 60.148 37.037 11.71 0.00 34.82 3.41
284 285 7.148306 TGGCTTTATTAATTCAAAGTCGGACTC 60.148 37.037 11.71 0.00 38.84 3.36
285 286 6.657541 TGGCTTTATTAATTCAAAGTCGGACT 59.342 34.615 4.45 4.45 38.84 3.85
286 287 6.848451 TGGCTTTATTAATTCAAAGTCGGAC 58.152 36.000 9.60 0.00 38.84 4.79
287 288 7.639113 ATGGCTTTATTAATTCAAAGTCGGA 57.361 32.000 9.60 0.00 38.84 4.55
288 289 7.973388 TCAATGGCTTTATTAATTCAAAGTCGG 59.027 33.333 9.60 4.16 38.84 4.79
289 290 8.798153 GTCAATGGCTTTATTAATTCAAAGTCG 58.202 33.333 9.60 0.00 38.84 4.18
290 291 9.860898 AGTCAATGGCTTTATTAATTCAAAGTC 57.139 29.630 7.94 7.94 36.99 3.01
303 304 8.875803 CGTTGTAAGTTATAGTCAATGGCTTTA 58.124 33.333 0.00 0.00 0.00 1.85
304 305 7.604927 TCGTTGTAAGTTATAGTCAATGGCTTT 59.395 33.333 0.00 0.00 0.00 3.51
305 306 7.101054 TCGTTGTAAGTTATAGTCAATGGCTT 58.899 34.615 0.00 0.00 0.00 4.35
306 307 6.636705 TCGTTGTAAGTTATAGTCAATGGCT 58.363 36.000 0.00 0.00 0.00 4.75
307 308 6.509677 GCTCGTTGTAAGTTATAGTCAATGGC 60.510 42.308 0.00 0.00 0.00 4.40
308 309 6.533723 TGCTCGTTGTAAGTTATAGTCAATGG 59.466 38.462 0.00 0.00 0.00 3.16
309 310 7.520119 TGCTCGTTGTAAGTTATAGTCAATG 57.480 36.000 0.00 0.00 0.00 2.82
310 311 8.718102 ATTGCTCGTTGTAAGTTATAGTCAAT 57.282 30.769 0.00 0.00 0.00 2.57
311 312 9.811995 ATATTGCTCGTTGTAAGTTATAGTCAA 57.188 29.630 0.00 0.00 0.00 3.18
312 313 9.459640 GATATTGCTCGTTGTAAGTTATAGTCA 57.540 33.333 0.00 0.00 0.00 3.41
313 314 8.913656 GGATATTGCTCGTTGTAAGTTATAGTC 58.086 37.037 0.00 0.00 0.00 2.59
314 315 8.418662 TGGATATTGCTCGTTGTAAGTTATAGT 58.581 33.333 0.00 0.00 0.00 2.12
315 316 8.812147 TGGATATTGCTCGTTGTAAGTTATAG 57.188 34.615 0.00 0.00 0.00 1.31
316 317 9.602568 TTTGGATATTGCTCGTTGTAAGTTATA 57.397 29.630 0.00 0.00 0.00 0.98
317 318 8.500753 TTTGGATATTGCTCGTTGTAAGTTAT 57.499 30.769 0.00 0.00 0.00 1.89
318 319 7.908827 TTTGGATATTGCTCGTTGTAAGTTA 57.091 32.000 0.00 0.00 0.00 2.24
319 320 6.811253 TTTGGATATTGCTCGTTGTAAGTT 57.189 33.333 0.00 0.00 0.00 2.66
320 321 6.811253 TTTTGGATATTGCTCGTTGTAAGT 57.189 33.333 0.00 0.00 0.00 2.24
321 322 7.526608 TCTTTTTGGATATTGCTCGTTGTAAG 58.473 34.615 0.00 0.00 0.00 2.34
322 323 7.441890 TCTTTTTGGATATTGCTCGTTGTAA 57.558 32.000 0.00 0.00 0.00 2.41
323 324 7.441890 TTCTTTTTGGATATTGCTCGTTGTA 57.558 32.000 0.00 0.00 0.00 2.41
324 325 5.957842 TCTTTTTGGATATTGCTCGTTGT 57.042 34.783 0.00 0.00 0.00 3.32
325 326 7.636259 TTTTCTTTTTGGATATTGCTCGTTG 57.364 32.000 0.00 0.00 0.00 4.10
347 348 7.170828 GGTATCAACCGCTTTCATTTTCTTTTT 59.829 33.333 0.00 0.00 35.62 1.94
348 349 6.645003 GGTATCAACCGCTTTCATTTTCTTTT 59.355 34.615 0.00 0.00 35.62 2.27
349 350 6.156519 GGTATCAACCGCTTTCATTTTCTTT 58.843 36.000 0.00 0.00 35.62 2.52
350 351 5.709966 GGTATCAACCGCTTTCATTTTCTT 58.290 37.500 0.00 0.00 35.62 2.52
351 352 5.310720 GGTATCAACCGCTTTCATTTTCT 57.689 39.130 0.00 0.00 35.62 2.52
364 365 1.090052 GCCAGCACTCGGTATCAACC 61.090 60.000 0.00 0.00 42.95 3.77
365 366 1.421410 CGCCAGCACTCGGTATCAAC 61.421 60.000 0.00 0.00 0.00 3.18
366 367 1.153647 CGCCAGCACTCGGTATCAA 60.154 57.895 0.00 0.00 0.00 2.57
367 368 2.494445 CGCCAGCACTCGGTATCA 59.506 61.111 0.00 0.00 0.00 2.15
368 369 2.962253 GCGCCAGCACTCGGTATC 60.962 66.667 0.00 0.00 44.35 2.24
384 385 3.482436 GCTTGTTTGCTATTGCGATTTGC 60.482 43.478 0.00 0.00 43.34 3.68
385 386 3.674281 TGCTTGTTTGCTATTGCGATTTG 59.326 39.130 0.00 0.00 43.34 2.32
386 387 3.911868 TGCTTGTTTGCTATTGCGATTT 58.088 36.364 0.00 0.00 43.34 2.17
387 388 3.574284 TGCTTGTTTGCTATTGCGATT 57.426 38.095 0.00 0.00 43.34 3.34
388 389 3.129113 TGATGCTTGTTTGCTATTGCGAT 59.871 39.130 0.00 0.00 43.34 4.58
389 390 2.487372 TGATGCTTGTTTGCTATTGCGA 59.513 40.909 0.00 0.00 43.34 5.10
390 391 2.866198 TGATGCTTGTTTGCTATTGCG 58.134 42.857 0.00 0.00 43.34 4.85
391 392 4.925054 TCTTTGATGCTTGTTTGCTATTGC 59.075 37.500 0.00 0.00 40.20 3.56
392 393 5.921976 TGTCTTTGATGCTTGTTTGCTATTG 59.078 36.000 0.00 0.00 0.00 1.90
393 394 6.088016 TGTCTTTGATGCTTGTTTGCTATT 57.912 33.333 0.00 0.00 0.00 1.73
394 395 5.710513 TGTCTTTGATGCTTGTTTGCTAT 57.289 34.783 0.00 0.00 0.00 2.97
395 396 5.163571 TGTTGTCTTTGATGCTTGTTTGCTA 60.164 36.000 0.00 0.00 0.00 3.49
396 397 4.114794 GTTGTCTTTGATGCTTGTTTGCT 58.885 39.130 0.00 0.00 0.00 3.91
397 398 3.864583 TGTTGTCTTTGATGCTTGTTTGC 59.135 39.130 0.00 0.00 0.00 3.68
398 399 5.501252 GCTTGTTGTCTTTGATGCTTGTTTG 60.501 40.000 0.00 0.00 0.00 2.93
399 400 4.567959 GCTTGTTGTCTTTGATGCTTGTTT 59.432 37.500 0.00 0.00 0.00 2.83
400 401 4.114794 GCTTGTTGTCTTTGATGCTTGTT 58.885 39.130 0.00 0.00 0.00 2.83
401 402 3.491447 GGCTTGTTGTCTTTGATGCTTGT 60.491 43.478 0.00 0.00 0.00 3.16
402 403 3.054878 GGCTTGTTGTCTTTGATGCTTG 58.945 45.455 0.00 0.00 0.00 4.01
403 404 2.961062 AGGCTTGTTGTCTTTGATGCTT 59.039 40.909 0.00 0.00 0.00 3.91
404 405 2.590821 AGGCTTGTTGTCTTTGATGCT 58.409 42.857 0.00 0.00 0.00 3.79
405 406 3.503748 AGTAGGCTTGTTGTCTTTGATGC 59.496 43.478 0.00 0.00 0.00 3.91
406 407 5.934625 ACTAGTAGGCTTGTTGTCTTTGATG 59.065 40.000 1.45 0.00 0.00 3.07
407 408 6.115448 ACTAGTAGGCTTGTTGTCTTTGAT 57.885 37.500 1.45 0.00 0.00 2.57
408 409 5.546621 ACTAGTAGGCTTGTTGTCTTTGA 57.453 39.130 1.45 0.00 0.00 2.69
409 410 7.222999 GCTATACTAGTAGGCTTGTTGTCTTTG 59.777 40.741 17.91 0.00 33.12 2.77
410 411 7.124448 AGCTATACTAGTAGGCTTGTTGTCTTT 59.876 37.037 20.59 0.00 33.12 2.52
411 412 6.608002 AGCTATACTAGTAGGCTTGTTGTCTT 59.392 38.462 20.59 0.00 33.12 3.01
412 413 6.039941 CAGCTATACTAGTAGGCTTGTTGTCT 59.960 42.308 22.56 5.26 33.12 3.41
413 414 6.210078 CAGCTATACTAGTAGGCTTGTTGTC 58.790 44.000 22.56 1.23 33.12 3.18
414 415 5.069251 CCAGCTATACTAGTAGGCTTGTTGT 59.931 44.000 22.56 6.33 33.12 3.32
415 416 5.533482 CCAGCTATACTAGTAGGCTTGTTG 58.467 45.833 22.56 15.34 33.12 3.33
416 417 4.039366 GCCAGCTATACTAGTAGGCTTGTT 59.961 45.833 22.56 7.14 41.48 2.83
417 418 3.574826 GCCAGCTATACTAGTAGGCTTGT 59.425 47.826 22.56 4.08 41.48 3.16
418 419 3.056465 GGCCAGCTATACTAGTAGGCTTG 60.056 52.174 22.47 20.53 43.06 4.01
419 420 3.166679 GGCCAGCTATACTAGTAGGCTT 58.833 50.000 22.47 11.05 43.06 4.35
420 421 2.110188 TGGCCAGCTATACTAGTAGGCT 59.890 50.000 22.47 21.53 43.06 4.58
421 422 2.526432 TGGCCAGCTATACTAGTAGGC 58.474 52.381 17.67 17.67 42.89 3.93
422 423 4.558898 CGTTTGGCCAGCTATACTAGTAGG 60.559 50.000 5.11 4.86 0.00 3.18
423 424 4.547532 CGTTTGGCCAGCTATACTAGTAG 58.452 47.826 5.11 0.00 0.00 2.57
424 425 3.319972 CCGTTTGGCCAGCTATACTAGTA 59.680 47.826 5.11 4.77 0.00 1.82
425 426 2.102588 CCGTTTGGCCAGCTATACTAGT 59.897 50.000 5.11 0.00 0.00 2.57
426 427 2.548067 CCCGTTTGGCCAGCTATACTAG 60.548 54.545 5.11 0.00 0.00 2.57
427 428 1.414919 CCCGTTTGGCCAGCTATACTA 59.585 52.381 5.11 0.00 0.00 1.82
428 429 0.180406 CCCGTTTGGCCAGCTATACT 59.820 55.000 5.11 0.00 0.00 2.12
429 430 2.702847 CCCGTTTGGCCAGCTATAC 58.297 57.895 5.11 0.00 0.00 1.47
492 493 4.720902 TGACGTGCCTGGCCCATG 62.721 66.667 17.53 6.45 0.00 3.66
493 494 4.722700 GTGACGTGCCTGGCCCAT 62.723 66.667 17.53 0.01 0.00 4.00
499 500 3.583276 TTAGCCCGTGACGTGCCTG 62.583 63.158 9.15 0.00 29.06 4.85
500 501 2.874664 TTTAGCCCGTGACGTGCCT 61.875 57.895 9.15 1.73 29.06 4.75
501 502 2.357760 TTTAGCCCGTGACGTGCC 60.358 61.111 9.15 0.00 29.06 5.01
502 503 2.858158 GTTTAGCCCGTGACGTGC 59.142 61.111 3.79 3.79 0.00 5.34
503 504 2.377310 CCGTTTAGCCCGTGACGTG 61.377 63.158 3.64 0.00 33.95 4.49
504 505 2.048877 CCGTTTAGCCCGTGACGT 60.049 61.111 3.64 0.00 33.95 4.34
505 506 2.812178 CCCGTTTAGCCCGTGACG 60.812 66.667 0.00 0.00 35.44 4.35
506 507 3.122971 GCCCGTTTAGCCCGTGAC 61.123 66.667 0.00 0.00 0.00 3.67
507 508 4.397832 GGCCCGTTTAGCCCGTGA 62.398 66.667 0.00 0.00 45.16 4.35
531 532 3.818787 CAAGGAGTGCCGCATGCC 61.819 66.667 13.15 0.96 40.16 4.40
532 533 3.818787 CCAAGGAGTGCCGCATGC 61.819 66.667 7.91 7.91 39.96 4.06
533 534 2.360350 ACCAAGGAGTGCCGCATG 60.360 61.111 0.00 0.00 39.96 4.06
534 535 2.045926 GACCAAGGAGTGCCGCAT 60.046 61.111 0.00 0.00 39.96 4.73
535 536 4.329545 GGACCAAGGAGTGCCGCA 62.330 66.667 0.00 0.00 39.96 5.69
537 538 4.003788 ACGGACCAAGGAGTGCCG 62.004 66.667 0.00 0.00 46.83 5.69
538 539 2.358737 CACGGACCAAGGAGTGCC 60.359 66.667 0.00 0.00 0.00 5.01
540 541 1.541310 TAGGCACGGACCAAGGAGTG 61.541 60.000 0.00 1.73 37.63 3.51
541 542 1.229082 TAGGCACGGACCAAGGAGT 60.229 57.895 0.00 0.00 0.00 3.85
542 543 1.517832 CTAGGCACGGACCAAGGAG 59.482 63.158 0.00 0.00 0.00 3.69
543 544 1.987855 CCTAGGCACGGACCAAGGA 60.988 63.158 0.00 0.00 0.00 3.36
544 545 2.584608 CCTAGGCACGGACCAAGG 59.415 66.667 0.00 0.00 0.00 3.61
545 546 2.125106 GCCTAGGCACGGACCAAG 60.125 66.667 29.33 0.00 41.49 3.61
546 547 2.221299 AAGCCTAGGCACGGACCAA 61.221 57.895 34.70 0.00 44.88 3.67
547 548 2.606519 AAGCCTAGGCACGGACCA 60.607 61.111 34.70 0.00 44.88 4.02
548 549 2.125106 CAAGCCTAGGCACGGACC 60.125 66.667 34.70 4.23 44.88 4.46
549 550 2.125106 CCAAGCCTAGGCACGGAC 60.125 66.667 34.70 5.03 44.88 4.79
550 551 2.284331 TCCAAGCCTAGGCACGGA 60.284 61.111 34.70 32.38 44.88 4.69
551 552 2.187946 CTCCAAGCCTAGGCACGG 59.812 66.667 34.70 30.79 44.88 4.94
552 553 2.512515 GCTCCAAGCCTAGGCACG 60.513 66.667 34.70 23.79 44.88 5.34
561 562 2.421399 GCATTCCCAGGCTCCAAGC 61.421 63.158 0.00 0.00 41.46 4.01
562 563 1.000521 TGCATTCCCAGGCTCCAAG 60.001 57.895 0.00 0.00 0.00 3.61
563 564 1.000521 CTGCATTCCCAGGCTCCAA 60.001 57.895 0.00 0.00 0.00 3.53
564 565 2.679092 CTGCATTCCCAGGCTCCA 59.321 61.111 0.00 0.00 0.00 3.86
565 566 2.123982 CCTGCATTCCCAGGCTCC 60.124 66.667 0.00 0.00 45.28 4.70
654 655 6.601332 TGGGCTGATTTTTAGACCTATTAGG 58.399 40.000 8.25 8.25 44.11 2.69
655 656 7.556275 TGTTGGGCTGATTTTTAGACCTATTAG 59.444 37.037 0.00 0.00 44.11 1.73
656 657 7.406916 TGTTGGGCTGATTTTTAGACCTATTA 58.593 34.615 0.00 0.00 44.11 0.98
657 658 6.252995 TGTTGGGCTGATTTTTAGACCTATT 58.747 36.000 0.00 0.00 44.11 1.73
658 659 5.826643 TGTTGGGCTGATTTTTAGACCTAT 58.173 37.500 0.00 0.00 44.11 2.57
659 660 5.249780 TGTTGGGCTGATTTTTAGACCTA 57.750 39.130 0.00 0.00 44.11 3.08
660 661 4.112634 TGTTGGGCTGATTTTTAGACCT 57.887 40.909 0.00 0.00 44.11 3.85
661 662 4.747810 CATGTTGGGCTGATTTTTAGACC 58.252 43.478 0.00 0.00 44.04 3.85
662 663 4.082026 AGCATGTTGGGCTGATTTTTAGAC 60.082 41.667 0.00 0.00 40.80 2.59
663 664 4.088634 AGCATGTTGGGCTGATTTTTAGA 58.911 39.130 0.00 0.00 40.80 2.10
664 665 4.460948 AGCATGTTGGGCTGATTTTTAG 57.539 40.909 0.00 0.00 40.80 1.85
673 674 1.972795 ACATTTTCAGCATGTTGGGCT 59.027 42.857 9.87 0.00 43.77 5.19
674 675 2.070783 CACATTTTCAGCATGTTGGGC 58.929 47.619 9.87 0.00 37.40 5.36
675 676 2.070783 GCACATTTTCAGCATGTTGGG 58.929 47.619 9.87 0.00 37.40 4.12
676 677 2.734606 CTGCACATTTTCAGCATGTTGG 59.265 45.455 9.87 0.00 37.68 3.77
684 685 1.787012 GTTGGGCTGCACATTTTCAG 58.213 50.000 4.95 0.00 0.00 3.02
685 686 0.031857 CGTTGGGCTGCACATTTTCA 59.968 50.000 4.95 0.00 0.00 2.69
686 687 0.031994 ACGTTGGGCTGCACATTTTC 59.968 50.000 4.95 0.00 0.00 2.29
687 688 0.249405 CACGTTGGGCTGCACATTTT 60.249 50.000 4.95 0.00 0.00 1.82
688 689 1.363443 CACGTTGGGCTGCACATTT 59.637 52.632 4.95 0.00 0.00 2.32
689 690 3.041701 CACGTTGGGCTGCACATT 58.958 55.556 4.95 0.00 0.00 2.71
690 691 2.746412 TAGCACGTTGGGCTGCACAT 62.746 55.000 4.95 0.00 42.62 3.21
691 692 2.949705 TTAGCACGTTGGGCTGCACA 62.950 55.000 0.00 0.00 42.62 4.57
692 693 2.258013 TTAGCACGTTGGGCTGCAC 61.258 57.895 8.99 0.00 42.62 4.57
693 694 2.112087 TTAGCACGTTGGGCTGCA 59.888 55.556 8.99 0.00 42.62 4.41
694 695 2.561373 GTTAGCACGTTGGGCTGC 59.439 61.111 8.99 0.00 42.62 5.25
695 696 2.677003 CGGTTAGCACGTTGGGCTG 61.677 63.158 8.99 0.00 42.62 4.85
696 697 2.358247 CGGTTAGCACGTTGGGCT 60.358 61.111 4.18 4.18 45.18 5.19
697 698 3.428282 CCGGTTAGCACGTTGGGC 61.428 66.667 0.00 0.00 0.00 5.36
698 699 2.744709 CCCGGTTAGCACGTTGGG 60.745 66.667 0.00 0.00 0.00 4.12
699 700 3.428282 GCCCGGTTAGCACGTTGG 61.428 66.667 0.00 0.00 0.00 3.77
700 701 3.428282 GGCCCGGTTAGCACGTTG 61.428 66.667 0.00 0.00 0.00 4.10
701 702 3.479127 TTGGCCCGGTTAGCACGTT 62.479 57.895 0.00 0.00 0.00 3.99
702 703 3.943691 TTGGCCCGGTTAGCACGT 61.944 61.111 0.00 0.00 0.00 4.49
703 704 3.428282 GTTGGCCCGGTTAGCACG 61.428 66.667 0.00 0.00 0.00 5.34
704 705 1.677633 ATGTTGGCCCGGTTAGCAC 60.678 57.895 0.00 0.00 0.00 4.40
705 706 1.677300 CATGTTGGCCCGGTTAGCA 60.677 57.895 0.00 0.00 0.00 3.49
706 707 3.063743 GCATGTTGGCCCGGTTAGC 62.064 63.158 0.00 0.00 0.00 3.09
707 708 3.196648 GCATGTTGGCCCGGTTAG 58.803 61.111 0.00 0.00 0.00 2.34
717 718 2.336478 TAAACGGGCCGGCATGTTG 61.336 57.895 31.78 16.41 0.00 3.33
718 719 2.034376 TAAACGGGCCGGCATGTT 59.966 55.556 31.78 27.29 0.00 2.71
719 720 1.901654 TAGTAAACGGGCCGGCATGT 61.902 55.000 31.78 22.91 0.00 3.21
720 721 0.745128 TTAGTAAACGGGCCGGCATG 60.745 55.000 31.78 22.17 0.00 4.06
721 722 0.745486 GTTAGTAAACGGGCCGGCAT 60.745 55.000 31.78 17.77 0.00 4.40
722 723 1.375780 GTTAGTAAACGGGCCGGCA 60.376 57.895 31.78 11.85 0.00 5.69
723 724 0.175531 TAGTTAGTAAACGGGCCGGC 59.824 55.000 31.78 21.18 40.73 6.13
724 725 1.202452 CCTAGTTAGTAAACGGGCCGG 60.202 57.143 31.78 12.53 40.73 6.13
725 726 1.803998 GCCTAGTTAGTAAACGGGCCG 60.804 57.143 27.06 27.06 45.26 6.13
726 727 1.945387 GCCTAGTTAGTAAACGGGCC 58.055 55.000 13.43 0.00 45.26 5.80
728 729 1.478105 ACGGCCTAGTTAGTAAACGGG 59.522 52.381 0.00 0.00 40.73 5.28
729 730 2.533266 CACGGCCTAGTTAGTAAACGG 58.467 52.381 0.00 0.00 40.73 4.44
730 731 1.922545 GCACGGCCTAGTTAGTAAACG 59.077 52.381 0.00 0.00 40.73 3.60
731 732 2.274437 GGCACGGCCTAGTTAGTAAAC 58.726 52.381 0.00 0.00 46.69 2.01
732 733 2.678471 GGCACGGCCTAGTTAGTAAA 57.322 50.000 0.00 0.00 46.69 2.01
744 745 4.733542 TTTAGGCCCAGGCACGGC 62.734 66.667 11.50 6.32 46.29 5.68
745 746 2.438434 CTTTAGGCCCAGGCACGG 60.438 66.667 11.50 0.00 44.11 4.94
746 747 2.438434 CCTTTAGGCCCAGGCACG 60.438 66.667 11.50 0.00 44.11 5.34
756 757 0.813184 CCACATGCTGTGCCTTTAGG 59.187 55.000 9.88 0.00 46.51 2.69
757 758 0.813184 CCCACATGCTGTGCCTTTAG 59.187 55.000 9.88 0.00 46.51 1.85
758 759 1.250154 GCCCACATGCTGTGCCTTTA 61.250 55.000 9.88 0.00 46.51 1.85
759 760 2.576832 GCCCACATGCTGTGCCTTT 61.577 57.895 9.88 0.00 46.51 3.11
760 761 2.993264 GCCCACATGCTGTGCCTT 60.993 61.111 9.88 0.00 46.51 4.35
765 766 3.952508 TGTCGGCCCACATGCTGT 61.953 61.111 0.00 0.00 38.77 4.40
766 767 3.434319 GTGTCGGCCCACATGCTG 61.434 66.667 6.43 0.00 39.04 4.41
801 802 3.136123 CATTCTGGCCTGGCACGG 61.136 66.667 22.05 14.60 0.00 4.94
802 803 3.136123 CCATTCTGGCCTGGCACG 61.136 66.667 22.05 10.56 0.00 5.34
803 804 2.757099 CCCATTCTGGCCTGGCAC 60.757 66.667 22.05 10.55 35.79 5.01
804 805 4.764771 GCCCATTCTGGCCTGGCA 62.765 66.667 22.05 3.71 46.11 4.92
811 812 4.856801 CGACCCGGCCCATTCTGG 62.857 72.222 0.00 0.00 37.25 3.86
812 813 4.096003 ACGACCCGGCCCATTCTG 62.096 66.667 0.00 0.00 0.00 3.02
813 814 3.782443 GACGACCCGGCCCATTCT 61.782 66.667 0.00 0.00 0.00 2.40
829 830 2.852075 AGACCTGGCCAAACGGGA 60.852 61.111 15.38 0.00 39.34 5.14
843 844 1.200948 GGCAACTTCATTGGAGCAGAC 59.799 52.381 0.00 0.00 38.88 3.51
845 846 0.529378 GGGCAACTTCATTGGAGCAG 59.471 55.000 0.00 0.00 38.88 4.24
848 849 3.019564 CCTTAGGGCAACTTCATTGGAG 58.980 50.000 0.00 0.00 38.88 3.86
850 851 3.085952 TCCTTAGGGCAACTTCATTGG 57.914 47.619 0.00 0.00 38.88 3.16
851 852 5.185635 TCATTTCCTTAGGGCAACTTCATTG 59.814 40.000 0.00 0.00 41.69 2.82
852 853 5.332743 TCATTTCCTTAGGGCAACTTCATT 58.667 37.500 0.00 0.00 0.00 2.57
853 854 4.934356 TCATTTCCTTAGGGCAACTTCAT 58.066 39.130 0.00 0.00 0.00 2.57
854 855 4.380843 TCATTTCCTTAGGGCAACTTCA 57.619 40.909 0.00 0.00 0.00 3.02
855 856 4.767409 ACTTCATTTCCTTAGGGCAACTTC 59.233 41.667 0.00 0.00 0.00 3.01
856 857 4.524328 CACTTCATTTCCTTAGGGCAACTT 59.476 41.667 0.00 0.00 0.00 2.66
877 878 1.963172 ACGGGGAAAGAACAGTTCAC 58.037 50.000 15.85 6.37 0.00 3.18
896 900 1.544825 CGAGGGAGTGAGAGGCCAAA 61.545 60.000 5.01 0.00 0.00 3.28
907 911 1.465794 GAAGACTGCTACGAGGGAGT 58.534 55.000 6.31 6.31 40.47 3.85
910 914 0.741915 GAGGAAGACTGCTACGAGGG 59.258 60.000 0.00 0.00 0.00 4.30
1201 9308 3.475932 ACCTGAGGTGGAGCAAGTA 57.524 52.632 1.77 0.00 32.98 2.24
1263 9388 1.414181 AGCATGAATCCGTCGGAATCT 59.586 47.619 25.73 11.51 33.14 2.40
1869 10075 2.139118 GCTGACAACTCCAAGTCTGTC 58.861 52.381 11.86 11.86 37.07 3.51
1943 10163 7.227156 ACAAGAGAAATGAGGAAACATACAGT 58.773 34.615 0.00 0.00 0.00 3.55
1944 10164 7.678947 ACAAGAGAAATGAGGAAACATACAG 57.321 36.000 0.00 0.00 0.00 2.74
1946 10166 9.436957 TTCTACAAGAGAAATGAGGAAACATAC 57.563 33.333 0.00 0.00 41.39 2.39
1965 10194 7.572814 TGTGATGATGGATATGGTTTCTACAA 58.427 34.615 0.00 0.00 0.00 2.41
2067 10306 4.771577 TGCAAAGGAGCTGGATCAAATTAA 59.228 37.500 0.00 0.00 34.99 1.40
2084 10323 3.744660 ACAGTCTAGGGAAAGTGCAAAG 58.255 45.455 0.00 0.00 0.00 2.77
2325 10584 3.634910 GGTCCCTAACACACACACAAAAT 59.365 43.478 0.00 0.00 0.00 1.82
2396 10670 4.072131 TCTTAAGACAGTTGGATGCAACC 58.928 43.478 24.50 5.96 35.79 3.77
2582 10856 1.202855 AGCATGAAGAGTGCCAACAGT 60.203 47.619 0.00 0.00 43.50 3.55
2585 10859 2.157738 AGAAGCATGAAGAGTGCCAAC 58.842 47.619 0.00 0.00 43.50 3.77
2588 10862 2.559440 CCTAGAAGCATGAAGAGTGCC 58.441 52.381 0.00 0.00 43.50 5.01
2589 10863 1.939255 GCCTAGAAGCATGAAGAGTGC 59.061 52.381 0.00 0.00 42.81 4.40
2590 10864 3.257469 TGCCTAGAAGCATGAAGAGTG 57.743 47.619 0.00 0.00 38.00 3.51
2601 10875 3.314635 GCCTGATGTTCAATGCCTAGAAG 59.685 47.826 0.00 0.00 0.00 2.85
2731 11181 9.613428 AGTTACAAATATGCAGTACATGTACAT 57.387 29.630 32.02 21.14 40.06 2.29
2732 11182 8.878769 CAGTTACAAATATGCAGTACATGTACA 58.121 33.333 32.02 16.27 40.06 2.90
2733 11183 8.335356 CCAGTTACAAATATGCAGTACATGTAC 58.665 37.037 25.51 25.51 40.06 2.90
2734 11184 7.011950 GCCAGTTACAAATATGCAGTACATGTA 59.988 37.037 0.08 0.08 40.06 2.29
2735 11185 6.183360 GCCAGTTACAAATATGCAGTACATGT 60.183 38.462 2.69 2.69 40.06 3.21
2736 11186 6.038603 AGCCAGTTACAAATATGCAGTACATG 59.961 38.462 0.00 0.00 40.06 3.21
2873 11587 6.375945 TGCAATATGTCGATAAACTGCAAT 57.624 33.333 11.26 0.00 35.75 3.56
2993 11804 6.019156 GCATAAGAAGAGCAAGATAGTCACAC 60.019 42.308 0.00 0.00 0.00 3.82
3088 11900 7.747155 AAATTTGCCAAAATCATTGACATGA 57.253 28.000 0.00 0.00 43.85 3.07
3117 11929 5.888982 ATTACAGAGGGTAACAGTATGGG 57.111 43.478 0.00 0.00 44.36 4.00
3168 11988 4.335416 TGGCTTCTTCCTGGTTATTTGAG 58.665 43.478 0.00 0.00 0.00 3.02
3556 12392 5.018149 TGCATTGAAGAAGATTGGAATGGA 58.982 37.500 0.00 0.00 0.00 3.41
3590 12541 1.977854 ACACCAGAGATTGCCAGTGTA 59.022 47.619 0.00 0.00 36.73 2.90
3779 12737 4.944317 TGAGGAGAGTACTGTAGTGATGTG 59.056 45.833 0.00 0.00 0.00 3.21
3792 12750 6.380274 CACTTAGGTTATGGTTGAGGAGAGTA 59.620 42.308 0.00 0.00 0.00 2.59
3881 13303 5.049680 CACAATGTGTAACTGGGTTGACTAC 60.050 44.000 5.00 0.00 38.04 2.73
3953 13378 1.470996 GGTTGGCCACAGGAATGCAA 61.471 55.000 3.88 0.00 34.09 4.08
4010 13435 2.086054 AACCTGTCGATCAGCTGTTC 57.914 50.000 14.67 14.17 42.38 3.18
4027 13452 7.498239 GGGAATTATACCTCTGGACAACTTAAC 59.502 40.741 0.00 0.00 0.00 2.01
4111 13539 2.989840 CTGTCGATCACCTGTCTTTGAC 59.010 50.000 0.00 0.00 0.00 3.18
4116 13544 3.130164 CAGAATCTGTCGATCACCTGTCT 59.870 47.826 1.31 0.00 0.00 3.41
4117 13545 3.443037 CAGAATCTGTCGATCACCTGTC 58.557 50.000 1.31 0.00 0.00 3.51
4150 13578 3.048337 AGCAATGCCTGTGAATTTTGG 57.952 42.857 0.00 0.00 0.00 3.28
4216 13646 6.729690 TGTTCTTTGGATTGTTTTGAGGAT 57.270 33.333 0.00 0.00 0.00 3.24
4228 13658 8.711457 CGCTGAAAATTAATTTGTTCTTTGGAT 58.289 29.630 14.04 0.00 0.00 3.41
4265 13695 3.508793 ACCTGCTCAAAACCATGAATGAG 59.491 43.478 0.00 3.59 41.69 2.90
4270 13700 2.655090 TCACCTGCTCAAAACCATGA 57.345 45.000 0.00 0.00 0.00 3.07
4282 13712 4.948847 ACTCAAATTTTCCTTTCACCTGC 58.051 39.130 0.00 0.00 0.00 4.85
4283 13713 6.340522 ACAACTCAAATTTTCCTTTCACCTG 58.659 36.000 0.00 0.00 0.00 4.00
4293 13723 5.009010 TCCAGCTCTGACAACTCAAATTTTC 59.991 40.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.