Multiple sequence alignment - TraesCS2A01G455900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G455900 chr2A 100.000 5510 0 0 1 5510 704770482 704764973 0 10176
1 TraesCS2A01G455900 chr2D 95.882 4031 132 17 1489 5508 564087643 564083636 0 6493
2 TraesCS2A01G455900 chr2D 93.645 1495 72 13 1 1488 564089160 564087682 0 2213
3 TraesCS2A01G455900 chr2B 95.489 4035 150 19 1489 5508 675348316 675344299 0 6414
4 TraesCS2A01G455900 chr2B 94.858 1478 69 6 1 1475 675349839 675348366 0 2302


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G455900 chr2A 704764973 704770482 5509 True 10176 10176 100.0000 1 5510 1 chr2A.!!$R1 5509
1 TraesCS2A01G455900 chr2D 564083636 564089160 5524 True 4353 6493 94.7635 1 5508 2 chr2D.!!$R1 5507
2 TraesCS2A01G455900 chr2B 675344299 675349839 5540 True 4358 6414 95.1735 1 5508 2 chr2B.!!$R1 5507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 957 0.032952 AGCGTAAAGTGTTCCTCGCA 59.967 50.000 9.76 0.00 44.83 5.10 F
1252 1259 0.104304 GTCCTGATTGGGATACGCGT 59.896 55.000 19.17 19.17 37.73 6.01 F
1810 1865 0.472471 AAGGGTTTTCTGTCGGCTCA 59.528 50.000 0.00 0.00 0.00 4.26 F
1813 1868 1.001633 GGGTTTTCTGTCGGCTCACTA 59.998 52.381 0.00 0.00 0.00 2.74 F
2161 2216 1.408683 GCATGTGGAATACAGGAGGCA 60.409 52.381 0.00 0.00 43.52 4.75 F
2170 2225 2.284754 TACAGGAGGCACATGCAAAA 57.715 45.000 6.15 0.00 44.36 2.44 F
2292 2347 3.195396 AGAGATCAGAGACTCCACTTTGC 59.805 47.826 0.00 0.00 34.13 3.68 F
2408 2463 3.242712 GCAATTGTTCGACAAAACCACAG 59.757 43.478 7.40 0.00 41.96 3.66 F
2743 2799 4.217550 GCCTAAGTTTTGTTAGTGGCATCA 59.782 41.667 0.00 0.00 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1857 1.066303 CAGATGAGGTAGTGAGCCGAC 59.934 57.143 0.0 0.0 0.00 4.79 R
2161 2216 1.888512 ACTCGCCAATCTTTTGCATGT 59.111 42.857 0.0 0.0 0.00 3.21 R
3563 3619 0.890542 TCGCTCCAGCTTTGCACATT 60.891 50.000 0.0 0.0 39.32 2.71 R
3752 3811 4.338400 TCTTGATGTACTCGATTCACCGAT 59.662 41.667 0.0 0.0 37.96 4.18 R
3923 3982 8.759641 CACATGATTACTACTATCTTCAGTTGC 58.240 37.037 0.0 0.0 0.00 4.17 R
4201 4263 6.440647 ACCTGTAATCCTGTGTGAAGATAAGA 59.559 38.462 0.0 0.0 0.00 2.10 R
4283 4345 5.666718 TGGGAAATGGCATCAGGATTTTATT 59.333 36.000 0.0 0.0 0.00 1.40 R
4385 4450 5.113383 TGATACAGCACAAACCCTATAACG 58.887 41.667 0.0 0.0 0.00 3.18 R
4565 4630 1.485397 CGAAGATCTCCAGATGCACG 58.515 55.000 0.0 0.0 34.37 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 3.620427 ACACCGTATGACTTGGCATAA 57.380 42.857 0.00 0.00 32.92 1.90
171 172 1.535204 AAGCAAAATCCACAGCCCCG 61.535 55.000 0.00 0.00 0.00 5.73
216 217 2.028484 GTCGCAACGTCAGGGTCA 59.972 61.111 0.00 0.00 0.00 4.02
303 304 1.878775 GCAGGACTTCATGGTGCAC 59.121 57.895 8.80 8.80 34.18 4.57
334 335 2.809601 CGTTCGGCAAGGAGTCCG 60.810 66.667 2.76 0.00 46.52 4.79
374 375 1.556911 GAAGGTCTCCAGAGCATCCAA 59.443 52.381 8.44 0.00 44.42 3.53
381 382 1.980765 TCCAGAGCATCCAAGAACTGT 59.019 47.619 0.00 0.00 33.66 3.55
384 385 2.027377 CAGAGCATCCAAGAACTGTCCT 60.027 50.000 0.00 0.00 33.66 3.85
386 387 1.280421 AGCATCCAAGAACTGTCCTCC 59.720 52.381 0.00 0.00 0.00 4.30
399 400 1.787796 TCCTCCCTGGAAGTAGCCA 59.212 57.895 0.00 0.00 42.94 4.75
417 418 1.611673 CCAGACATGAGGGTGTTCCAC 60.612 57.143 0.00 0.00 38.24 4.02
526 527 2.750237 GGGTGATGACGTTGGGCC 60.750 66.667 0.00 0.00 0.00 5.80
871 875 1.079127 GTGGGACCGAGATGTGTGG 60.079 63.158 0.00 0.00 0.00 4.17
877 881 1.002087 GACCGAGATGTGTGGACCTTT 59.998 52.381 0.00 0.00 0.00 3.11
882 886 2.303022 GAGATGTGTGGACCTTTCCTGA 59.697 50.000 0.00 0.00 43.31 3.86
896 900 3.374042 TTCCTGAGTGTGGACCAAAAA 57.626 42.857 0.00 0.00 32.65 1.94
950 957 0.032952 AGCGTAAAGTGTTCCTCGCA 59.967 50.000 9.76 0.00 44.83 5.10
1250 1257 2.146342 CATGTCCTGATTGGGATACGC 58.854 52.381 0.00 0.00 37.73 4.42
1252 1259 0.104304 GTCCTGATTGGGATACGCGT 59.896 55.000 19.17 19.17 37.73 6.01
1277 1284 1.017701 GTTCGAATCCGCCGTTTCCT 61.018 55.000 0.00 0.00 35.37 3.36
1287 1294 1.597663 CGCCGTTTCCTGATTACATCC 59.402 52.381 0.00 0.00 0.00 3.51
1339 1348 3.675467 GGTGATTACCGATTTCAGTGC 57.325 47.619 0.00 0.00 37.19 4.40
1354 1363 7.580523 CGATTTCAGTGCGAGAAATAGTTAATG 59.419 37.037 9.80 0.00 43.60 1.90
1492 1547 1.152589 TGCTTTGGCACATCCACCA 60.153 52.632 0.00 0.00 46.55 4.17
1499 1554 0.740737 GGCACATCCACCACTTATGC 59.259 55.000 0.00 0.00 34.01 3.14
1600 1655 0.905357 GCTCTGTCAGGGGTATGTGT 59.095 55.000 0.89 0.00 0.00 3.72
1606 1661 4.042809 TCTGTCAGGGGTATGTGTTTGAAT 59.957 41.667 0.00 0.00 0.00 2.57
1616 1671 2.566913 TGTGTTTGAATGCCTACACGT 58.433 42.857 0.00 0.00 42.81 4.49
1617 1672 2.946329 TGTGTTTGAATGCCTACACGTT 59.054 40.909 0.00 0.00 42.81 3.99
1626 1681 2.683968 TGCCTACACGTTGAATCACTC 58.316 47.619 0.00 0.00 0.00 3.51
1645 1700 4.825422 ACTCTGTTGTGTATGAGTGATGG 58.175 43.478 0.00 0.00 38.22 3.51
1646 1701 4.528206 ACTCTGTTGTGTATGAGTGATGGA 59.472 41.667 0.00 0.00 38.22 3.41
1689 1744 4.695928 GGACCTAGTTTTCAGTTAAGCTGG 59.304 45.833 0.00 0.00 45.08 4.85
1744 1799 2.226330 TCCAGGTGGAAAATTGACACG 58.774 47.619 0.00 0.00 42.18 4.49
1763 1818 4.095185 ACACGAAGTACTACTCTGCTGATC 59.905 45.833 0.00 0.00 41.61 2.92
1777 1832 4.015084 CTGCTGATCTTTCCATTTGGACT 58.985 43.478 0.00 0.00 45.39 3.85
1802 1857 4.217118 CACATCTTGAGGAAGGGTTTTCTG 59.783 45.833 0.00 0.00 0.00 3.02
1810 1865 0.472471 AAGGGTTTTCTGTCGGCTCA 59.528 50.000 0.00 0.00 0.00 4.26
1813 1868 1.001633 GGGTTTTCTGTCGGCTCACTA 59.998 52.381 0.00 0.00 0.00 2.74
1921 1976 4.755411 TCCTGCTGTTATTTCTAGTTCCG 58.245 43.478 0.00 0.00 0.00 4.30
1928 1983 6.183360 GCTGTTATTTCTAGTTCCGTTCTCAC 60.183 42.308 0.00 0.00 0.00 3.51
1931 1986 4.516365 TTTCTAGTTCCGTTCTCACTCC 57.484 45.455 0.00 0.00 0.00 3.85
1933 1988 3.493334 TCTAGTTCCGTTCTCACTCCAA 58.507 45.455 0.00 0.00 0.00 3.53
1935 1990 3.771577 AGTTCCGTTCTCACTCCAAAT 57.228 42.857 0.00 0.00 0.00 2.32
2066 2121 1.971695 CCTCCGAAACTGGGTTGGC 60.972 63.158 0.00 0.00 0.00 4.52
2105 2160 3.253188 GGTTTGAAGTTCTGCTGTGCATA 59.747 43.478 4.17 0.00 38.13 3.14
2161 2216 1.408683 GCATGTGGAATACAGGAGGCA 60.409 52.381 0.00 0.00 43.52 4.75
2170 2225 2.284754 TACAGGAGGCACATGCAAAA 57.715 45.000 6.15 0.00 44.36 2.44
2292 2347 3.195396 AGAGATCAGAGACTCCACTTTGC 59.805 47.826 0.00 0.00 34.13 3.68
2362 2417 5.860182 CCAATGCTGACTTTGACAAATGTAG 59.140 40.000 0.05 1.72 33.81 2.74
2408 2463 3.242712 GCAATTGTTCGACAAAACCACAG 59.757 43.478 7.40 0.00 41.96 3.66
2497 2552 8.191446 AGGTGCGCACTTAGTATATAATGATAG 58.809 37.037 36.84 0.00 0.00 2.08
2532 2587 4.775236 AGTCAATTGGCTCTCTTATGACC 58.225 43.478 6.77 0.00 37.10 4.02
2743 2799 4.217550 GCCTAAGTTTTGTTAGTGGCATCA 59.782 41.667 0.00 0.00 0.00 3.07
2776 2832 5.486526 CTTCTTAGTGAAGCTCTGGACATT 58.513 41.667 0.00 0.00 44.62 2.71
2858 2914 5.240844 AGAACCGTGTTTGGGAAGATTTAAG 59.759 40.000 0.00 0.00 0.00 1.85
3068 3124 7.281774 TGCAAAATTGAAAAGGCAATTCAAGTA 59.718 29.630 18.34 6.38 46.52 2.24
3229 3285 9.753674 ATTGTTTGATGGAGTCTAATAAAAGGA 57.246 29.630 0.00 0.00 29.81 3.36
3235 3291 9.053472 TGATGGAGTCTAATAAAAGGAACCTAA 57.947 33.333 0.00 0.00 0.00 2.69
3563 3619 6.657117 TGCTTGCTCTAACAAACAACCATATA 59.343 34.615 0.00 0.00 0.00 0.86
3653 3712 4.600062 AGAACCCTGTATTTGGCCTTAAG 58.400 43.478 3.32 0.00 0.00 1.85
3752 3811 4.239428 TCTGATGAGCAATGGGAATTCA 57.761 40.909 7.93 0.00 0.00 2.57
3923 3982 4.442375 AATCCTGTAACTCAGAGTCACG 57.558 45.455 2.72 0.00 46.27 4.35
4419 4484 9.423061 GGTTTGTGCTGTATCATTAAGAATTTT 57.577 29.630 0.00 0.00 0.00 1.82
4449 4514 7.548427 TCTCTTGATTCTTGAATCAACTAGCTG 59.452 37.037 25.77 18.10 42.39 4.24
4495 4560 1.600013 ACGTTACTGTTGAATTGCGCA 59.400 42.857 5.66 5.66 0.00 6.09
4536 4601 6.499106 TGAGAGCATCCTACCAAATTATCA 57.501 37.500 0.00 0.00 33.66 2.15
4537 4602 6.291377 TGAGAGCATCCTACCAAATTATCAC 58.709 40.000 0.00 0.00 33.66 3.06
4565 4630 6.259829 GGTTCTAAGAGGCTGAAAATGAGATC 59.740 42.308 0.00 0.00 0.00 2.75
4591 4656 1.628340 TCTGGAGATCTTCGGGCAAAA 59.372 47.619 10.12 0.00 0.00 2.44
4661 4727 6.944557 TCATGTGTTCAGTACGTAAATCTG 57.055 37.500 0.00 0.61 0.00 2.90
4718 4785 6.600032 ACCTGACAACACTACATAACAAAACA 59.400 34.615 0.00 0.00 0.00 2.83
4721 4788 8.903570 TGACAACACTACATAACAAAACAAAG 57.096 30.769 0.00 0.00 0.00 2.77
4726 4793 5.398122 CACTACATAACAAAACAAAGTGCCG 59.602 40.000 0.00 0.00 0.00 5.69
4728 4795 5.000012 ACATAACAAAACAAAGTGCCGAA 58.000 34.783 0.00 0.00 0.00 4.30
4748 4815 5.875930 CGAAGGGTTTATACAATTCACACC 58.124 41.667 0.00 0.00 0.00 4.16
4797 4864 1.412710 TGAACCGTTGTCAGAGCTCTT 59.587 47.619 15.27 0.00 0.00 2.85
4982 5055 4.338795 TGGTAGAGATCAGGGAGAGTTT 57.661 45.455 0.00 0.00 0.00 2.66
5157 5233 3.879932 GCATCGGGCAAGTTAAGATAC 57.120 47.619 0.00 0.00 43.97 2.24
5508 5585 6.344500 CCAAACATCTGAGCAGTAGAAGTAT 58.656 40.000 0.00 0.00 0.00 2.12
5509 5586 6.478344 CCAAACATCTGAGCAGTAGAAGTATC 59.522 42.308 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.370978 CCAAGTCATACGGTGTTGATCAC 59.629 47.826 0.00 0.00 45.47 3.06
90 91 0.464452 GGAACAGTATGCTAGCGGGT 59.536 55.000 10.77 1.07 42.53 5.28
131 132 3.320626 TCGAAGCAGTTCAGTCAGATTG 58.679 45.455 0.00 0.00 32.36 2.67
171 172 2.480037 TGTTGACATGTTCGTGAGATGC 59.520 45.455 0.00 0.00 41.60 3.91
303 304 1.866925 GAACGCCTTCACTTTCGGG 59.133 57.895 0.00 0.00 0.00 5.14
337 338 0.747644 TTCATGTCCATGCGCCGAAT 60.748 50.000 4.18 0.00 38.65 3.34
756 757 2.684104 CCGTCTCCTCCTCCTCCA 59.316 66.667 0.00 0.00 0.00 3.86
871 875 1.270893 GGTCCACACTCAGGAAAGGTC 60.271 57.143 0.00 0.00 36.80 3.85
877 881 2.422803 CCTTTTTGGTCCACACTCAGGA 60.423 50.000 0.00 0.00 0.00 3.86
896 900 1.735376 CGGTATCTGCGCCAGTACCT 61.735 60.000 21.97 5.51 36.71 3.08
959 966 1.889530 GAGCTACAGAAGGCGGGTGT 61.890 60.000 0.00 0.00 0.00 4.16
963 970 1.520342 GCAGAGCTACAGAAGGCGG 60.520 63.158 0.00 0.00 0.00 6.13
1057 1064 2.356818 CTGTACCCTAGCGCTGCTCC 62.357 65.000 22.90 3.35 40.44 4.70
1061 1068 1.614241 AACCCTGTACCCTAGCGCTG 61.614 60.000 22.90 10.13 0.00 5.18
1213 1220 4.375272 GACATGTACAGATGTGAGATGGG 58.625 47.826 6.83 0.00 36.67 4.00
1216 1223 4.958581 TCAGGACATGTACAGATGTGAGAT 59.041 41.667 11.55 0.00 36.67 2.75
1220 1227 4.573607 CCAATCAGGACATGTACAGATGTG 59.426 45.833 16.05 14.64 41.22 3.21
1250 1257 0.648958 GCGGATTCGAACCCTAAACG 59.351 55.000 7.06 2.65 39.00 3.60
1252 1259 0.460635 CGGCGGATTCGAACCCTAAA 60.461 55.000 7.06 0.00 39.00 1.85
1287 1294 3.551082 CGAAATCTTCTCACTAGCAGCAG 59.449 47.826 0.00 0.00 0.00 4.24
1328 1337 5.456192 AACTATTTCTCGCACTGAAATCG 57.544 39.130 10.49 8.21 41.49 3.34
1339 1348 7.462856 CGTCAACTCCACATTAACTATTTCTCG 60.463 40.741 0.00 0.00 0.00 4.04
1354 1363 1.003718 CCTTCCCCGTCAACTCCAC 60.004 63.158 0.00 0.00 0.00 4.02
1566 1621 0.464036 AGAGCACACCTGACGACAAA 59.536 50.000 0.00 0.00 0.00 2.83
1572 1627 0.320247 CCTGACAGAGCACACCTGAC 60.320 60.000 3.32 0.00 35.69 3.51
1600 1655 4.517075 TGATTCAACGTGTAGGCATTCAAA 59.483 37.500 0.00 0.00 0.00 2.69
1606 1661 2.299013 AGAGTGATTCAACGTGTAGGCA 59.701 45.455 0.00 0.00 0.00 4.75
1616 1671 6.524734 ACTCATACACAACAGAGTGATTCAA 58.475 36.000 0.57 0.00 42.05 2.69
1617 1672 6.101650 ACTCATACACAACAGAGTGATTCA 57.898 37.500 0.57 0.00 42.05 2.57
1626 1681 4.628766 CACTCCATCACTCATACACAACAG 59.371 45.833 0.00 0.00 0.00 3.16
1642 1697 5.877012 CACTAATTCTGCAAGTACACTCCAT 59.123 40.000 0.00 0.00 33.76 3.41
1645 1700 5.348997 GTCCACTAATTCTGCAAGTACACTC 59.651 44.000 0.00 0.00 33.76 3.51
1646 1701 5.238583 GTCCACTAATTCTGCAAGTACACT 58.761 41.667 0.00 0.00 33.76 3.55
1744 1799 6.127591 TGGAAAGATCAGCAGAGTAGTACTTC 60.128 42.308 0.00 0.00 0.00 3.01
1777 1832 1.067295 ACCCTTCCTCAAGATGTGCA 58.933 50.000 0.00 0.00 0.00 4.57
1802 1857 1.066303 CAGATGAGGTAGTGAGCCGAC 59.934 57.143 0.00 0.00 0.00 4.79
1810 1865 3.200825 CCAATTGGTCCAGATGAGGTAGT 59.799 47.826 16.90 0.00 0.00 2.73
1813 1868 1.341383 GCCAATTGGTCCAGATGAGGT 60.341 52.381 25.19 0.00 37.57 3.85
1892 1947 8.635765 ACTAGAAATAACAGCAGGAATCAAAA 57.364 30.769 0.00 0.00 0.00 2.44
1901 1956 5.869888 AGAACGGAACTAGAAATAACAGCAG 59.130 40.000 0.00 0.00 0.00 4.24
1903 1958 5.867716 TGAGAACGGAACTAGAAATAACAGC 59.132 40.000 0.00 0.00 0.00 4.40
1933 1988 9.929180 GGTTCAAAAGAGCTAAATAAAGGAATT 57.071 29.630 0.00 0.00 0.00 2.17
1935 1990 8.706322 AGGTTCAAAAGAGCTAAATAAAGGAA 57.294 30.769 0.00 0.00 0.00 3.36
1947 2002 6.293462 CCAGTAGTTACAAGGTTCAAAAGAGC 60.293 42.308 0.00 0.00 0.00 4.09
2066 2121 8.517878 ACTTCAAACCTCTGAACATCAATATTG 58.482 33.333 9.29 9.29 32.00 1.90
2105 2160 4.400567 GGCACAAGATCTGCTTTATTTCCT 59.599 41.667 0.00 0.00 33.60 3.36
2161 2216 1.888512 ACTCGCCAATCTTTTGCATGT 59.111 42.857 0.00 0.00 0.00 3.21
2170 2225 2.826128 TCACTACTTGACTCGCCAATCT 59.174 45.455 0.00 0.00 0.00 2.40
2198 2253 6.752285 ATCCCAAAATCCAAATATTCAGGG 57.248 37.500 6.96 0.00 35.60 4.45
2309 2364 9.604626 GCACAAGCTTCAATATACTCAATATTC 57.395 33.333 0.00 0.00 36.92 1.75
2362 2417 3.671716 CCCACAGGACAACTTAGTTACC 58.328 50.000 10.85 10.85 33.47 2.85
2497 2552 4.730657 CCAATTGACTTGAAGATGAGCAC 58.269 43.478 7.12 0.00 36.97 4.40
2574 2629 7.122650 CCCAAAGTGTGATCCAAAATAGTATGT 59.877 37.037 0.00 0.00 0.00 2.29
2678 2733 5.651387 TCACCACAGAAAATTGTCAACAA 57.349 34.783 0.00 0.00 40.51 2.83
2680 2735 8.081633 TCATAATCACCACAGAAAATTGTCAAC 58.918 33.333 0.00 0.00 0.00 3.18
2776 2832 6.665992 TGACCTTTTCTACTAAGAAGCTCA 57.334 37.500 0.00 0.00 42.60 4.26
2834 2890 2.951229 ATCTTCCCAAACACGGTTCT 57.049 45.000 0.00 0.00 0.00 3.01
2902 2958 5.232838 GCGCTGAAAAATAAATGGGAATCTG 59.767 40.000 0.00 0.00 0.00 2.90
3068 3124 8.711457 GCGGTAATACGGTATAAAACAATATGT 58.289 33.333 0.22 0.00 0.00 2.29
3505 3561 4.926832 ACAAAACCATGGCGCTAATTTAAC 59.073 37.500 13.04 0.00 0.00 2.01
3563 3619 0.890542 TCGCTCCAGCTTTGCACATT 60.891 50.000 0.00 0.00 39.32 2.71
3752 3811 4.338400 TCTTGATGTACTCGATTCACCGAT 59.662 41.667 0.00 0.00 37.96 4.18
3923 3982 8.759641 CACATGATTACTACTATCTTCAGTTGC 58.240 37.037 0.00 0.00 0.00 4.17
4201 4263 6.440647 ACCTGTAATCCTGTGTGAAGATAAGA 59.559 38.462 0.00 0.00 0.00 2.10
4282 4344 6.843333 TGGGAAATGGCATCAGGATTTTATTA 59.157 34.615 0.00 0.00 0.00 0.98
4283 4345 5.666718 TGGGAAATGGCATCAGGATTTTATT 59.333 36.000 0.00 0.00 0.00 1.40
4385 4450 5.113383 TGATACAGCACAAACCCTATAACG 58.887 41.667 0.00 0.00 0.00 3.18
4476 4541 2.308347 TGCGCAATTCAACAGTAACG 57.692 45.000 8.16 0.00 0.00 3.18
4536 4601 4.640771 TTTCAGCCTCTTAGAACCATGT 57.359 40.909 0.00 0.00 0.00 3.21
4537 4602 5.649395 TCATTTTCAGCCTCTTAGAACCATG 59.351 40.000 0.00 0.00 0.00 3.66
4565 4630 1.485397 CGAAGATCTCCAGATGCACG 58.515 55.000 0.00 0.00 34.37 5.34
4628 4693 4.449131 ACTGAACACATGATATGGAGCAG 58.551 43.478 0.00 0.00 33.60 4.24
4718 4785 4.023726 TGTATAAACCCTTCGGCACTTT 57.976 40.909 0.00 0.00 0.00 2.66
4721 4788 4.396790 TGAATTGTATAAACCCTTCGGCAC 59.603 41.667 0.00 0.00 0.00 5.01
4726 4793 5.413523 ACGGTGTGAATTGTATAAACCCTTC 59.586 40.000 0.00 0.00 0.00 3.46
4728 4795 4.913784 ACGGTGTGAATTGTATAAACCCT 58.086 39.130 0.00 0.00 0.00 4.34
4748 4815 2.457366 AGCTTGGAAGGACAGTAACG 57.543 50.000 0.00 0.00 0.00 3.18
4982 5055 4.211125 TGTTTTACCATGCTGTCTGGAAA 58.789 39.130 4.91 0.32 37.22 3.13
5148 5221 9.685828 TGTTTGCAATTAACTTGGTATCTTAAC 57.314 29.630 0.00 0.00 35.25 2.01
5157 5233 5.347342 TGTGAGTGTTTGCAATTAACTTGG 58.653 37.500 0.00 0.00 35.25 3.61
5255 5332 5.453567 AGACTGCCAAAAGGAATGTTTAC 57.546 39.130 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.