Multiple sequence alignment - TraesCS2A01G455500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G455500 chr2A 100.000 3398 0 0 1 3398 704020921 704017524 0.000000e+00 6276
1 TraesCS2A01G455500 chr2A 90.611 1374 67 20 1496 2837 38506379 38505036 0.000000e+00 1766
2 TraesCS2A01G455500 chr3B 98.833 2741 31 1 658 3398 521413620 521410881 0.000000e+00 4883
3 TraesCS2A01G455500 chr3B 94.702 1944 67 7 1490 3398 726425334 726427276 0.000000e+00 2987
4 TraesCS2A01G455500 chr3B 94.027 1172 43 5 2240 3398 13545487 13546644 0.000000e+00 1751
5 TraesCS2A01G455500 chr3B 92.990 1184 31 8 2240 3398 13517463 13518619 0.000000e+00 1679
6 TraesCS2A01G455500 chr3B 95.957 841 33 1 659 1499 13529176 13530015 0.000000e+00 1363
7 TraesCS2A01G455500 chr3B 95.363 841 39 0 659 1499 726424352 726425192 0.000000e+00 1338
8 TraesCS2A01G455500 chr3B 94.187 843 33 4 659 1499 13510173 13511001 0.000000e+00 1271
9 TraesCS2A01G455500 chr1B 96.110 1928 35 10 1496 3398 539848962 539847050 0.000000e+00 3109
10 TraesCS2A01G455500 chr1B 96.698 848 21 2 659 1505 539849942 539849101 0.000000e+00 1404
11 TraesCS2A01G455500 chr1B 89.469 1073 67 16 2095 3140 548829398 548828345 0.000000e+00 1314
12 TraesCS2A01G455500 chr7D 92.000 1950 92 22 1490 3398 525734703 525736629 0.000000e+00 2678
13 TraesCS2A01G455500 chr1D 91.354 1943 102 25 1496 3398 42896270 42894354 0.000000e+00 2597
14 TraesCS2A01G455500 chr1D 90.547 1883 96 28 1490 3327 7181446 7183291 0.000000e+00 2416
15 TraesCS2A01G455500 chr3D 90.960 1947 94 29 1496 3398 594953964 594952056 0.000000e+00 2545
16 TraesCS2A01G455500 chr3D 90.867 1949 98 36 1490 3398 590154271 590156179 0.000000e+00 2540
17 TraesCS2A01G455500 chr5A 90.611 1736 97 16 1490 3181 634625129 634626842 0.000000e+00 2242
18 TraesCS2A01G455500 chr4A 87.597 1935 147 29 1515 3398 85531161 85529269 0.000000e+00 2158
19 TraesCS2A01G455500 chr6B 85.985 1691 181 21 1490 3148 417302698 417304364 0.000000e+00 1759
20 TraesCS2A01G455500 chr2B 89.545 1100 62 14 2331 3396 80549093 80548013 0.000000e+00 1345
21 TraesCS2A01G455500 chr2B 90.974 842 62 5 659 1499 80552660 80551832 0.000000e+00 1122
22 TraesCS2A01G455500 chr2B 93.082 159 10 1 376 533 674741014 674740856 7.330000e-57 231
23 TraesCS2A01G455500 chr2B 90.449 178 9 2 190 360 674741176 674741000 9.490000e-56 228
24 TraesCS2A01G455500 chr2B 85.083 181 22 4 3 181 674741482 674741305 2.690000e-41 180
25 TraesCS2A01G455500 chr6A 90.339 1004 66 11 2406 3398 116691954 116692937 0.000000e+00 1288
26 TraesCS2A01G455500 chr5D 92.280 842 52 5 659 1499 388593173 388594002 0.000000e+00 1182
27 TraesCS2A01G455500 chr6D 91.636 825 54 7 659 1481 45675922 45676733 0.000000e+00 1127
28 TraesCS2A01G455500 chr5B 90.749 854 54 7 2413 3263 418360579 418359748 0.000000e+00 1116
29 TraesCS2A01G455500 chr4D 89.858 848 74 6 659 1499 108842224 108843066 0.000000e+00 1079
30 TraesCS2A01G455500 chr2D 90.000 270 10 7 374 626 563968665 563968396 1.950000e-87 333
31 TraesCS2A01G455500 chr2D 91.753 194 12 3 170 360 563968841 563968649 2.010000e-67 267
32 TraesCS2A01G455500 chr2D 95.455 66 3 0 108 173 563970459 563970394 4.640000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G455500 chr2A 704017524 704020921 3397 True 6276.000000 6276 100.000000 1 3398 1 chr2A.!!$R2 3397
1 TraesCS2A01G455500 chr2A 38505036 38506379 1343 True 1766.000000 1766 90.611000 1496 2837 1 chr2A.!!$R1 1341
2 TraesCS2A01G455500 chr3B 521410881 521413620 2739 True 4883.000000 4883 98.833000 658 3398 1 chr3B.!!$R1 2740
3 TraesCS2A01G455500 chr3B 726424352 726427276 2924 False 2162.500000 2987 95.032500 659 3398 2 chr3B.!!$F5 2739
4 TraesCS2A01G455500 chr3B 13545487 13546644 1157 False 1751.000000 1751 94.027000 2240 3398 1 chr3B.!!$F4 1158
5 TraesCS2A01G455500 chr3B 13517463 13518619 1156 False 1679.000000 1679 92.990000 2240 3398 1 chr3B.!!$F2 1158
6 TraesCS2A01G455500 chr3B 13529176 13530015 839 False 1363.000000 1363 95.957000 659 1499 1 chr3B.!!$F3 840
7 TraesCS2A01G455500 chr3B 13510173 13511001 828 False 1271.000000 1271 94.187000 659 1499 1 chr3B.!!$F1 840
8 TraesCS2A01G455500 chr1B 539847050 539849942 2892 True 2256.500000 3109 96.404000 659 3398 2 chr1B.!!$R2 2739
9 TraesCS2A01G455500 chr1B 548828345 548829398 1053 True 1314.000000 1314 89.469000 2095 3140 1 chr1B.!!$R1 1045
10 TraesCS2A01G455500 chr7D 525734703 525736629 1926 False 2678.000000 2678 92.000000 1490 3398 1 chr7D.!!$F1 1908
11 TraesCS2A01G455500 chr1D 42894354 42896270 1916 True 2597.000000 2597 91.354000 1496 3398 1 chr1D.!!$R1 1902
12 TraesCS2A01G455500 chr1D 7181446 7183291 1845 False 2416.000000 2416 90.547000 1490 3327 1 chr1D.!!$F1 1837
13 TraesCS2A01G455500 chr3D 594952056 594953964 1908 True 2545.000000 2545 90.960000 1496 3398 1 chr3D.!!$R1 1902
14 TraesCS2A01G455500 chr3D 590154271 590156179 1908 False 2540.000000 2540 90.867000 1490 3398 1 chr3D.!!$F1 1908
15 TraesCS2A01G455500 chr5A 634625129 634626842 1713 False 2242.000000 2242 90.611000 1490 3181 1 chr5A.!!$F1 1691
16 TraesCS2A01G455500 chr4A 85529269 85531161 1892 True 2158.000000 2158 87.597000 1515 3398 1 chr4A.!!$R1 1883
17 TraesCS2A01G455500 chr6B 417302698 417304364 1666 False 1759.000000 1759 85.985000 1490 3148 1 chr6B.!!$F1 1658
18 TraesCS2A01G455500 chr2B 80548013 80552660 4647 True 1233.500000 1345 90.259500 659 3396 2 chr2B.!!$R1 2737
19 TraesCS2A01G455500 chr2B 674740856 674741482 626 True 213.000000 231 89.538000 3 533 3 chr2B.!!$R2 530
20 TraesCS2A01G455500 chr6A 116691954 116692937 983 False 1288.000000 1288 90.339000 2406 3398 1 chr6A.!!$F1 992
21 TraesCS2A01G455500 chr5D 388593173 388594002 829 False 1182.000000 1182 92.280000 659 1499 1 chr5D.!!$F1 840
22 TraesCS2A01G455500 chr6D 45675922 45676733 811 False 1127.000000 1127 91.636000 659 1481 1 chr6D.!!$F1 822
23 TraesCS2A01G455500 chr5B 418359748 418360579 831 True 1116.000000 1116 90.749000 2413 3263 1 chr5B.!!$R1 850
24 TraesCS2A01G455500 chr4D 108842224 108843066 842 False 1079.000000 1079 89.858000 659 1499 1 chr4D.!!$F1 840
25 TraesCS2A01G455500 chr2D 563968396 563970459 2063 True 235.333333 333 92.402667 108 626 3 chr2D.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.032540 CTGTTTGTCTGGGCCAAAGC 59.967 55.0 8.04 1.55 32.79 3.51 F
439 2127 0.036952 AGGTTGCCATGACTCACGAG 60.037 55.0 0.00 0.00 0.00 4.18 F
484 2172 0.174162 GCATGCATCTTTCGCCCTTT 59.826 50.0 14.21 0.00 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 3789 0.252479 ATCAGCTTGACTCTGCAGGG 59.748 55.000 13.44 13.44 0.0 4.45 R
2260 4137 1.884579 CATTACAGATCAGGGGCATGC 59.115 52.381 9.90 9.90 0.0 4.06 R
2409 6072 8.081633 CCTATGTAATGCAAGTTTCAGTTTCAA 58.918 33.333 0.00 0.00 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 2.666862 CTGCACGTTGGGCCGTTA 60.667 61.111 0.00 0.00 39.45 3.18
55 56 2.961669 CTGCACGTTGGGCCGTTAC 61.962 63.158 0.00 0.00 39.45 2.50
56 57 2.973600 GCACGTTGGGCCGTTACA 60.974 61.111 0.00 0.00 39.45 2.41
57 58 2.329614 GCACGTTGGGCCGTTACAT 61.330 57.895 0.00 0.00 39.45 2.29
58 59 1.791662 CACGTTGGGCCGTTACATC 59.208 57.895 0.00 0.00 39.45 3.06
66 67 1.467342 GGGCCGTTACATCTGTTTGTC 59.533 52.381 0.00 0.00 0.00 3.18
68 69 2.159627 GGCCGTTACATCTGTTTGTCTG 59.840 50.000 0.00 0.00 0.00 3.51
72 73 2.488153 GTTACATCTGTTTGTCTGGGCC 59.512 50.000 0.00 0.00 0.00 5.80
76 77 1.691196 TCTGTTTGTCTGGGCCAAAG 58.309 50.000 8.04 0.69 32.79 2.77
77 78 0.032540 CTGTTTGTCTGGGCCAAAGC 59.967 55.000 8.04 1.55 32.79 3.51
140 141 3.623060 GCTAAGTCGATCCAATTGCTTGA 59.377 43.478 0.00 0.00 34.04 3.02
291 1979 3.599343 CAACTCACGATTCCAGATTCCA 58.401 45.455 0.00 0.00 0.00 3.53
317 2005 4.243270 GCTACCTGCGACTAAGAAAAGAA 58.757 43.478 0.00 0.00 0.00 2.52
322 2010 4.274950 CCTGCGACTAAGAAAAGAAACCAA 59.725 41.667 0.00 0.00 0.00 3.67
343 2031 6.380274 ACCAACTCTTATCTTATCTTGTCCGA 59.620 38.462 0.00 0.00 0.00 4.55
344 2032 7.070074 ACCAACTCTTATCTTATCTTGTCCGAT 59.930 37.037 0.00 0.00 0.00 4.18
345 2033 7.928706 CCAACTCTTATCTTATCTTGTCCGATT 59.071 37.037 0.00 0.00 0.00 3.34
346 2034 9.967346 CAACTCTTATCTTATCTTGTCCGATTA 57.033 33.333 0.00 0.00 0.00 1.75
410 2098 8.830201 TTGTTGATCAACTTTAATTTGGATGG 57.170 30.769 32.57 0.00 41.67 3.51
411 2099 8.187913 TGTTGATCAACTTTAATTTGGATGGA 57.812 30.769 32.57 9.55 41.67 3.41
412 2100 8.814931 TGTTGATCAACTTTAATTTGGATGGAT 58.185 29.630 32.57 0.00 41.67 3.41
413 2101 9.305925 GTTGATCAACTTTAATTTGGATGGATC 57.694 33.333 27.66 0.00 38.25 3.36
414 2102 8.592529 TGATCAACTTTAATTTGGATGGATCA 57.407 30.769 0.00 0.00 36.16 2.92
415 2103 8.689061 TGATCAACTTTAATTTGGATGGATCAG 58.311 33.333 0.00 0.00 34.28 2.90
416 2104 7.408756 TCAACTTTAATTTGGATGGATCAGG 57.591 36.000 0.00 0.00 0.00 3.86
417 2105 6.953520 TCAACTTTAATTTGGATGGATCAGGT 59.046 34.615 0.00 0.00 0.00 4.00
418 2106 7.454380 TCAACTTTAATTTGGATGGATCAGGTT 59.546 33.333 0.00 0.00 0.00 3.50
419 2107 7.410120 ACTTTAATTTGGATGGATCAGGTTC 57.590 36.000 0.00 0.00 0.00 3.62
420 2108 6.953520 ACTTTAATTTGGATGGATCAGGTTCA 59.046 34.615 0.00 0.00 0.00 3.18
421 2109 7.123247 ACTTTAATTTGGATGGATCAGGTTCAG 59.877 37.037 0.00 0.00 0.00 3.02
422 2110 3.370840 TTTGGATGGATCAGGTTCAGG 57.629 47.619 0.00 0.00 0.00 3.86
423 2111 1.971149 TGGATGGATCAGGTTCAGGT 58.029 50.000 0.00 0.00 0.00 4.00
424 2112 2.278245 TGGATGGATCAGGTTCAGGTT 58.722 47.619 0.00 0.00 0.00 3.50
425 2113 2.025981 TGGATGGATCAGGTTCAGGTTG 60.026 50.000 0.00 0.00 0.00 3.77
426 2114 2.019984 GATGGATCAGGTTCAGGTTGC 58.980 52.381 0.00 0.00 0.00 4.17
427 2115 0.038166 TGGATCAGGTTCAGGTTGCC 59.962 55.000 0.00 0.00 0.00 4.52
428 2116 0.038166 GGATCAGGTTCAGGTTGCCA 59.962 55.000 0.00 0.00 0.00 4.92
429 2117 1.341383 GGATCAGGTTCAGGTTGCCAT 60.341 52.381 0.00 0.00 0.00 4.40
430 2118 1.747355 GATCAGGTTCAGGTTGCCATG 59.253 52.381 0.00 0.00 0.00 3.66
431 2119 0.770499 TCAGGTTCAGGTTGCCATGA 59.230 50.000 0.00 0.00 0.00 3.07
432 2120 0.883833 CAGGTTCAGGTTGCCATGAC 59.116 55.000 0.00 0.00 0.00 3.06
433 2121 0.773644 AGGTTCAGGTTGCCATGACT 59.226 50.000 0.00 0.00 0.00 3.41
434 2122 1.168714 GGTTCAGGTTGCCATGACTC 58.831 55.000 0.00 0.00 0.00 3.36
435 2123 1.545428 GGTTCAGGTTGCCATGACTCA 60.545 52.381 0.00 0.00 0.00 3.41
436 2124 1.537202 GTTCAGGTTGCCATGACTCAC 59.463 52.381 0.00 0.00 0.00 3.51
437 2125 0.320683 TCAGGTTGCCATGACTCACG 60.321 55.000 0.00 0.00 0.00 4.35
438 2126 0.320683 CAGGTTGCCATGACTCACGA 60.321 55.000 0.00 0.00 0.00 4.35
439 2127 0.036952 AGGTTGCCATGACTCACGAG 60.037 55.000 0.00 0.00 0.00 4.18
440 2128 0.320771 GGTTGCCATGACTCACGAGT 60.321 55.000 0.00 0.00 45.84 4.18
441 2129 0.792640 GTTGCCATGACTCACGAGTG 59.207 55.000 4.01 0.00 42.66 3.51
442 2130 0.950555 TTGCCATGACTCACGAGTGC 60.951 55.000 4.01 2.47 42.66 4.40
443 2131 2.103042 GCCATGACTCACGAGTGCC 61.103 63.158 4.01 0.00 42.66 5.01
444 2132 1.448540 CCATGACTCACGAGTGCCC 60.449 63.158 4.01 0.00 42.66 5.36
445 2133 1.593787 CATGACTCACGAGTGCCCT 59.406 57.895 4.01 0.00 42.66 5.19
446 2134 0.459237 CATGACTCACGAGTGCCCTC 60.459 60.000 4.01 0.00 42.66 4.30
459 2147 1.975660 TGCCCTCGCAAAAGTTTACT 58.024 45.000 0.00 0.00 43.74 2.24
460 2148 2.303175 TGCCCTCGCAAAAGTTTACTT 58.697 42.857 0.00 0.00 43.74 2.24
462 2150 3.243267 TGCCCTCGCAAAAGTTTACTTTC 60.243 43.478 8.21 0.00 44.69 2.62
463 2151 3.004419 GCCCTCGCAAAAGTTTACTTTCT 59.996 43.478 8.21 0.00 44.69 2.52
464 2152 4.499188 GCCCTCGCAAAAGTTTACTTTCTT 60.499 41.667 8.21 0.00 44.69 2.52
465 2153 4.976116 CCCTCGCAAAAGTTTACTTTCTTG 59.024 41.667 8.21 5.70 44.69 3.02
466 2154 4.441087 CCTCGCAAAAGTTTACTTTCTTGC 59.559 41.667 16.51 16.51 44.69 4.01
467 2155 4.987832 TCGCAAAAGTTTACTTTCTTGCA 58.012 34.783 22.13 12.42 44.07 4.08
468 2156 5.587289 TCGCAAAAGTTTACTTTCTTGCAT 58.413 33.333 22.13 2.43 44.07 3.96
469 2157 5.458452 TCGCAAAAGTTTACTTTCTTGCATG 59.542 36.000 22.13 12.40 44.07 4.06
470 2158 5.434706 GCAAAAGTTTACTTTCTTGCATGC 58.565 37.500 19.54 11.82 44.69 4.06
471 2159 5.006552 GCAAAAGTTTACTTTCTTGCATGCA 59.993 36.000 18.46 18.46 44.69 3.96
472 2160 6.293027 GCAAAAGTTTACTTTCTTGCATGCAT 60.293 34.615 23.37 7.94 44.69 3.96
473 2161 7.285788 CAAAAGTTTACTTTCTTGCATGCATC 58.714 34.615 23.37 2.59 44.69 3.91
474 2162 5.972107 AGTTTACTTTCTTGCATGCATCT 57.028 34.783 23.37 3.02 0.00 2.90
475 2163 6.336842 AGTTTACTTTCTTGCATGCATCTT 57.663 33.333 23.37 5.64 0.00 2.40
476 2164 6.752168 AGTTTACTTTCTTGCATGCATCTTT 58.248 32.000 23.37 6.74 0.00 2.52
477 2165 6.865205 AGTTTACTTTCTTGCATGCATCTTTC 59.135 34.615 23.37 5.06 0.00 2.62
478 2166 3.829948 ACTTTCTTGCATGCATCTTTCG 58.170 40.909 23.37 11.11 0.00 3.46
479 2167 2.267188 TTCTTGCATGCATCTTTCGC 57.733 45.000 23.37 0.00 0.00 4.70
480 2168 0.452987 TCTTGCATGCATCTTTCGCC 59.547 50.000 23.37 0.00 0.00 5.54
481 2169 0.526954 CTTGCATGCATCTTTCGCCC 60.527 55.000 23.37 0.00 0.00 6.13
482 2170 0.966875 TTGCATGCATCTTTCGCCCT 60.967 50.000 23.37 0.00 0.00 5.19
483 2171 0.966875 TGCATGCATCTTTCGCCCTT 60.967 50.000 18.46 0.00 0.00 3.95
484 2172 0.174162 GCATGCATCTTTCGCCCTTT 59.826 50.000 14.21 0.00 0.00 3.11
485 2173 1.404583 GCATGCATCTTTCGCCCTTTT 60.405 47.619 14.21 0.00 0.00 2.27
486 2174 2.932187 GCATGCATCTTTCGCCCTTTTT 60.932 45.455 14.21 0.00 0.00 1.94
487 2175 2.437200 TGCATCTTTCGCCCTTTTTG 57.563 45.000 0.00 0.00 0.00 2.44
488 2176 1.959985 TGCATCTTTCGCCCTTTTTGA 59.040 42.857 0.00 0.00 0.00 2.69
489 2177 2.288152 TGCATCTTTCGCCCTTTTTGAC 60.288 45.455 0.00 0.00 0.00 3.18
490 2178 2.029918 GCATCTTTCGCCCTTTTTGACT 60.030 45.455 0.00 0.00 0.00 3.41
491 2179 3.190535 GCATCTTTCGCCCTTTTTGACTA 59.809 43.478 0.00 0.00 0.00 2.59
492 2180 4.723248 CATCTTTCGCCCTTTTTGACTAC 58.277 43.478 0.00 0.00 0.00 2.73
493 2181 3.143728 TCTTTCGCCCTTTTTGACTACC 58.856 45.455 0.00 0.00 0.00 3.18
494 2182 2.943036 TTCGCCCTTTTTGACTACCT 57.057 45.000 0.00 0.00 0.00 3.08
495 2183 2.178912 TCGCCCTTTTTGACTACCTG 57.821 50.000 0.00 0.00 0.00 4.00
496 2184 1.165270 CGCCCTTTTTGACTACCTGG 58.835 55.000 0.00 0.00 0.00 4.45
497 2185 0.888619 GCCCTTTTTGACTACCTGGC 59.111 55.000 0.00 0.00 0.00 4.85
498 2186 1.547901 GCCCTTTTTGACTACCTGGCT 60.548 52.381 0.00 0.00 34.83 4.75
499 2187 2.162681 CCCTTTTTGACTACCTGGCTG 58.837 52.381 0.00 0.00 0.00 4.85
500 2188 2.162681 CCTTTTTGACTACCTGGCTGG 58.837 52.381 9.11 9.11 42.93 4.85
501 2189 2.224769 CCTTTTTGACTACCTGGCTGGA 60.225 50.000 18.12 0.09 39.71 3.86
502 2190 3.562176 CCTTTTTGACTACCTGGCTGGAT 60.562 47.826 18.12 4.22 39.71 3.41
503 2191 2.787473 TTTGACTACCTGGCTGGATG 57.213 50.000 18.12 11.02 39.71 3.51
504 2192 0.253044 TTGACTACCTGGCTGGATGC 59.747 55.000 18.12 4.19 39.71 3.91
505 2193 1.227380 GACTACCTGGCTGGATGCG 60.227 63.158 18.12 4.70 44.05 4.73
506 2194 2.590007 CTACCTGGCTGGATGCGC 60.590 66.667 18.12 0.00 44.05 6.09
507 2195 3.083349 TACCTGGCTGGATGCGCT 61.083 61.111 18.12 0.00 44.05 5.92
508 2196 2.599645 CTACCTGGCTGGATGCGCTT 62.600 60.000 18.12 0.55 44.05 4.68
509 2197 2.196997 TACCTGGCTGGATGCGCTTT 62.197 55.000 18.12 0.00 44.05 3.51
510 2198 2.488355 CTGGCTGGATGCGCTTTG 59.512 61.111 9.73 0.00 44.05 2.77
511 2199 3.695022 CTGGCTGGATGCGCTTTGC 62.695 63.158 9.73 8.51 44.05 3.68
512 2200 3.446570 GGCTGGATGCGCTTTGCT 61.447 61.111 9.73 0.00 46.63 3.91
513 2201 2.101770 GCTGGATGCGCTTTGCTC 59.898 61.111 9.73 0.00 46.63 4.26
514 2202 2.404995 GCTGGATGCGCTTTGCTCT 61.405 57.895 9.73 0.00 46.63 4.09
515 2203 1.930908 GCTGGATGCGCTTTGCTCTT 61.931 55.000 9.73 0.00 46.63 2.85
516 2204 0.524862 CTGGATGCGCTTTGCTCTTT 59.475 50.000 9.73 0.00 46.63 2.52
517 2205 0.961019 TGGATGCGCTTTGCTCTTTT 59.039 45.000 9.73 0.00 46.63 2.27
518 2206 2.158559 TGGATGCGCTTTGCTCTTTTA 58.841 42.857 9.73 0.00 46.63 1.52
519 2207 2.556189 TGGATGCGCTTTGCTCTTTTAA 59.444 40.909 9.73 0.00 46.63 1.52
520 2208 3.005261 TGGATGCGCTTTGCTCTTTTAAA 59.995 39.130 9.73 0.00 46.63 1.52
521 2209 3.364920 GGATGCGCTTTGCTCTTTTAAAC 59.635 43.478 9.73 0.00 46.63 2.01
522 2210 3.708563 TGCGCTTTGCTCTTTTAAACT 57.291 38.095 9.73 0.00 46.63 2.66
523 2211 3.371168 TGCGCTTTGCTCTTTTAAACTG 58.629 40.909 9.73 0.00 46.63 3.16
524 2212 2.153817 GCGCTTTGCTCTTTTAAACTGC 59.846 45.455 0.00 0.00 41.73 4.40
525 2213 3.632189 CGCTTTGCTCTTTTAAACTGCT 58.368 40.909 7.47 0.00 0.00 4.24
526 2214 3.423206 CGCTTTGCTCTTTTAAACTGCTG 59.577 43.478 7.47 0.00 0.00 4.41
527 2215 3.183172 GCTTTGCTCTTTTAAACTGCTGC 59.817 43.478 0.00 0.00 0.00 5.25
528 2216 4.614946 CTTTGCTCTTTTAAACTGCTGCT 58.385 39.130 0.00 0.00 0.00 4.24
529 2217 5.762045 CTTTGCTCTTTTAAACTGCTGCTA 58.238 37.500 0.00 0.00 0.00 3.49
530 2218 4.749245 TGCTCTTTTAAACTGCTGCTAC 57.251 40.909 0.00 0.00 0.00 3.58
531 2219 4.389374 TGCTCTTTTAAACTGCTGCTACT 58.611 39.130 0.00 0.00 0.00 2.57
532 2220 5.547465 TGCTCTTTTAAACTGCTGCTACTA 58.453 37.500 0.00 0.00 0.00 1.82
533 2221 5.408604 TGCTCTTTTAAACTGCTGCTACTAC 59.591 40.000 0.00 0.00 0.00 2.73
534 2222 5.639931 GCTCTTTTAAACTGCTGCTACTACT 59.360 40.000 0.00 0.00 0.00 2.57
535 2223 6.183360 GCTCTTTTAAACTGCTGCTACTACTC 60.183 42.308 0.00 0.00 0.00 2.59
536 2224 6.164176 TCTTTTAAACTGCTGCTACTACTCC 58.836 40.000 0.00 0.00 0.00 3.85
537 2225 5.740290 TTTAAACTGCTGCTACTACTCCT 57.260 39.130 0.00 0.00 0.00 3.69
538 2226 6.845758 TTTAAACTGCTGCTACTACTCCTA 57.154 37.500 0.00 0.00 0.00 2.94
539 2227 7.419711 TTTAAACTGCTGCTACTACTCCTAT 57.580 36.000 0.00 0.00 0.00 2.57
540 2228 8.529424 TTTAAACTGCTGCTACTACTCCTATA 57.471 34.615 0.00 0.00 0.00 1.31
541 2229 8.707796 TTAAACTGCTGCTACTACTCCTATAT 57.292 34.615 0.00 0.00 0.00 0.86
542 2230 9.803507 TTAAACTGCTGCTACTACTCCTATATA 57.196 33.333 0.00 0.00 0.00 0.86
543 2231 8.707796 AAACTGCTGCTACTACTCCTATATAA 57.292 34.615 0.00 0.00 0.00 0.98
544 2232 8.707796 AACTGCTGCTACTACTCCTATATAAA 57.292 34.615 0.00 0.00 0.00 1.40
545 2233 8.113173 ACTGCTGCTACTACTCCTATATAAAC 57.887 38.462 0.00 0.00 0.00 2.01
546 2234 7.945664 ACTGCTGCTACTACTCCTATATAAACT 59.054 37.037 0.00 0.00 0.00 2.66
547 2235 8.707796 TGCTGCTACTACTCCTATATAAACTT 57.292 34.615 0.00 0.00 0.00 2.66
548 2236 8.577296 TGCTGCTACTACTCCTATATAAACTTG 58.423 37.037 0.00 0.00 0.00 3.16
549 2237 7.542824 GCTGCTACTACTCCTATATAAACTTGC 59.457 40.741 0.00 0.00 0.00 4.01
550 2238 8.473358 TGCTACTACTCCTATATAAACTTGCA 57.527 34.615 0.00 0.00 0.00 4.08
551 2239 8.920174 TGCTACTACTCCTATATAAACTTGCAA 58.080 33.333 0.00 0.00 0.00 4.08
552 2240 9.930693 GCTACTACTCCTATATAAACTTGCAAT 57.069 33.333 0.00 0.00 0.00 3.56
563 2251 4.970472 AAACTTGCAATTTACATGTGCG 57.030 36.364 9.11 0.00 41.27 5.34
564 2252 2.327568 ACTTGCAATTTACATGTGCGC 58.672 42.857 9.11 0.00 41.27 6.09
565 2253 2.288091 ACTTGCAATTTACATGTGCGCA 60.288 40.909 5.66 5.66 41.27 6.09
566 2254 2.651135 TGCAATTTACATGTGCGCAT 57.349 40.000 15.91 7.01 41.27 4.73
567 2255 2.528125 TGCAATTTACATGTGCGCATC 58.472 42.857 15.91 8.33 41.27 3.91
568 2256 2.164017 TGCAATTTACATGTGCGCATCT 59.836 40.909 15.91 0.64 41.27 2.90
569 2257 3.376546 TGCAATTTACATGTGCGCATCTA 59.623 39.130 15.91 3.47 41.27 1.98
570 2258 4.142513 TGCAATTTACATGTGCGCATCTAA 60.143 37.500 15.91 6.84 41.27 2.10
571 2259 4.438797 GCAATTTACATGTGCGCATCTAAG 59.561 41.667 15.91 4.97 31.99 2.18
572 2260 5.572211 CAATTTACATGTGCGCATCTAAGT 58.428 37.500 15.91 11.12 31.99 2.24
573 2261 5.818136 ATTTACATGTGCGCATCTAAGTT 57.182 34.783 15.91 0.00 31.99 2.66
574 2262 6.918892 ATTTACATGTGCGCATCTAAGTTA 57.081 33.333 15.91 0.00 31.99 2.24
575 2263 6.729391 TTTACATGTGCGCATCTAAGTTAA 57.271 33.333 15.91 6.10 31.99 2.01
576 2264 4.864916 ACATGTGCGCATCTAAGTTAAG 57.135 40.909 15.91 0.00 31.99 1.85
577 2265 3.063997 ACATGTGCGCATCTAAGTTAAGC 59.936 43.478 15.91 0.00 31.99 3.09
578 2266 2.006888 TGTGCGCATCTAAGTTAAGCC 58.993 47.619 15.91 0.00 0.00 4.35
579 2267 2.006888 GTGCGCATCTAAGTTAAGCCA 58.993 47.619 15.91 0.00 0.00 4.75
580 2268 2.614057 GTGCGCATCTAAGTTAAGCCAT 59.386 45.455 15.91 0.00 0.00 4.40
581 2269 2.872245 TGCGCATCTAAGTTAAGCCATC 59.128 45.455 5.66 0.00 0.00 3.51
582 2270 2.224314 GCGCATCTAAGTTAAGCCATCC 59.776 50.000 0.30 0.00 0.00 3.51
583 2271 3.466836 CGCATCTAAGTTAAGCCATCCA 58.533 45.455 0.00 0.00 0.00 3.41
584 2272 3.248602 CGCATCTAAGTTAAGCCATCCAC 59.751 47.826 0.00 0.00 0.00 4.02
585 2273 4.455606 GCATCTAAGTTAAGCCATCCACT 58.544 43.478 0.00 0.00 0.00 4.00
586 2274 4.513318 GCATCTAAGTTAAGCCATCCACTC 59.487 45.833 0.00 0.00 0.00 3.51
587 2275 5.674525 CATCTAAGTTAAGCCATCCACTCA 58.325 41.667 0.00 0.00 0.00 3.41
588 2276 5.755409 TCTAAGTTAAGCCATCCACTCAA 57.245 39.130 0.00 0.00 0.00 3.02
589 2277 5.734720 TCTAAGTTAAGCCATCCACTCAAG 58.265 41.667 0.00 0.00 0.00 3.02
590 2278 3.356529 AGTTAAGCCATCCACTCAAGG 57.643 47.619 0.00 0.00 0.00 3.61
591 2279 2.025887 AGTTAAGCCATCCACTCAAGGG 60.026 50.000 0.00 0.00 0.00 3.95
592 2280 0.255890 TAAGCCATCCACTCAAGGGC 59.744 55.000 0.00 0.00 44.92 5.19
593 2281 2.679716 GCCATCCACTCAAGGGCT 59.320 61.111 0.00 0.00 41.39 5.19
594 2282 1.751927 GCCATCCACTCAAGGGCTG 60.752 63.158 0.00 0.00 41.39 4.85
595 2283 1.993653 CCATCCACTCAAGGGCTGA 59.006 57.895 0.00 0.00 0.00 4.26
596 2284 0.549950 CCATCCACTCAAGGGCTGAT 59.450 55.000 0.00 0.00 32.14 2.90
597 2285 1.476471 CCATCCACTCAAGGGCTGATC 60.476 57.143 0.00 0.00 32.14 2.92
598 2286 1.211212 CATCCACTCAAGGGCTGATCA 59.789 52.381 0.00 0.00 32.14 2.92
599 2287 0.907486 TCCACTCAAGGGCTGATCAG 59.093 55.000 18.84 18.84 32.14 2.90
600 2288 0.617413 CCACTCAAGGGCTGATCAGT 59.383 55.000 23.38 1.24 32.14 3.41
601 2289 1.678123 CCACTCAAGGGCTGATCAGTG 60.678 57.143 23.38 13.79 32.14 3.66
602 2290 1.002888 CACTCAAGGGCTGATCAGTGT 59.997 52.381 23.38 6.21 32.14 3.55
603 2291 1.002888 ACTCAAGGGCTGATCAGTGTG 59.997 52.381 23.38 15.78 32.14 3.82
604 2292 0.321919 TCAAGGGCTGATCAGTGTGC 60.322 55.000 23.38 10.23 0.00 4.57
605 2293 1.376424 AAGGGCTGATCAGTGTGCG 60.376 57.895 23.38 0.00 0.00 5.34
606 2294 3.503363 GGGCTGATCAGTGTGCGC 61.503 66.667 23.38 14.33 0.00 6.09
607 2295 2.743538 GGCTGATCAGTGTGCGCA 60.744 61.111 23.38 5.66 0.00 6.09
608 2296 2.110967 GGCTGATCAGTGTGCGCAT 61.111 57.895 23.38 0.00 0.00 4.73
609 2297 1.062047 GCTGATCAGTGTGCGCATG 59.938 57.895 23.38 8.55 0.00 4.06
610 2298 1.062047 CTGATCAGTGTGCGCATGC 59.938 57.895 15.91 7.91 43.20 4.06
622 2310 1.917273 GCGCATGCATTGATTCTTGT 58.083 45.000 19.57 0.00 42.15 3.16
623 2311 1.586578 GCGCATGCATTGATTCTTGTG 59.413 47.619 19.57 0.00 42.15 3.33
624 2312 1.586578 CGCATGCATTGATTCTTGTGC 59.413 47.619 19.57 0.00 38.05 4.57
628 2316 2.612604 TGCATTGATTCTTGTGCATGC 58.387 42.857 11.82 11.82 42.13 4.06
629 2317 2.232696 TGCATTGATTCTTGTGCATGCT 59.767 40.909 20.33 0.00 42.13 3.79
630 2318 2.603110 GCATTGATTCTTGTGCATGCTG 59.397 45.455 20.33 5.01 37.52 4.41
631 2319 2.357327 TTGATTCTTGTGCATGCTGC 57.643 45.000 20.33 12.29 45.29 5.25
632 2320 1.541379 TGATTCTTGTGCATGCTGCT 58.459 45.000 20.33 0.00 45.31 4.24
633 2321 2.713877 TGATTCTTGTGCATGCTGCTA 58.286 42.857 20.33 7.91 45.31 3.49
634 2322 3.083293 TGATTCTTGTGCATGCTGCTAA 58.917 40.909 20.33 7.33 45.31 3.09
635 2323 3.697542 TGATTCTTGTGCATGCTGCTAAT 59.302 39.130 20.33 11.72 45.31 1.73
636 2324 4.883006 TGATTCTTGTGCATGCTGCTAATA 59.117 37.500 20.33 0.00 45.31 0.98
637 2325 5.533528 TGATTCTTGTGCATGCTGCTAATAT 59.466 36.000 20.33 4.43 45.31 1.28
638 2326 4.823790 TCTTGTGCATGCTGCTAATATG 57.176 40.909 20.33 0.00 45.31 1.78
639 2327 4.201657 TCTTGTGCATGCTGCTAATATGT 58.798 39.130 20.33 0.00 45.31 2.29
640 2328 4.641541 TCTTGTGCATGCTGCTAATATGTT 59.358 37.500 20.33 0.00 45.31 2.71
641 2329 4.556942 TGTGCATGCTGCTAATATGTTC 57.443 40.909 20.33 0.00 45.31 3.18
642 2330 3.316029 TGTGCATGCTGCTAATATGTTCC 59.684 43.478 20.33 0.00 45.31 3.62
643 2331 3.567164 GTGCATGCTGCTAATATGTTCCT 59.433 43.478 20.33 0.00 45.31 3.36
644 2332 4.037208 GTGCATGCTGCTAATATGTTCCTT 59.963 41.667 20.33 0.00 45.31 3.36
645 2333 5.239306 GTGCATGCTGCTAATATGTTCCTTA 59.761 40.000 20.33 0.00 45.31 2.69
646 2334 5.239306 TGCATGCTGCTAATATGTTCCTTAC 59.761 40.000 20.33 0.00 45.31 2.34
647 2335 5.335191 GCATGCTGCTAATATGTTCCTTACC 60.335 44.000 11.37 0.00 40.96 2.85
648 2336 5.630415 TGCTGCTAATATGTTCCTTACCT 57.370 39.130 0.00 0.00 0.00 3.08
649 2337 5.611374 TGCTGCTAATATGTTCCTTACCTC 58.389 41.667 0.00 0.00 0.00 3.85
650 2338 5.366768 TGCTGCTAATATGTTCCTTACCTCT 59.633 40.000 0.00 0.00 0.00 3.69
651 2339 5.698545 GCTGCTAATATGTTCCTTACCTCTG 59.301 44.000 0.00 0.00 0.00 3.35
652 2340 6.463049 GCTGCTAATATGTTCCTTACCTCTGA 60.463 42.308 0.00 0.00 0.00 3.27
653 2341 7.432148 TGCTAATATGTTCCTTACCTCTGAA 57.568 36.000 0.00 0.00 0.00 3.02
654 2342 7.500992 TGCTAATATGTTCCTTACCTCTGAAG 58.499 38.462 0.00 0.00 0.00 3.02
655 2343 7.344612 TGCTAATATGTTCCTTACCTCTGAAGA 59.655 37.037 0.00 0.00 0.00 2.87
656 2344 8.204836 GCTAATATGTTCCTTACCTCTGAAGAA 58.795 37.037 0.00 0.00 0.00 2.52
672 2360 7.173863 TCTGAAGAACGAGTAATTGACAAAC 57.826 36.000 0.00 0.00 0.00 2.93
796 2484 5.139435 TCGAGTTGATGACTGATTGAAGT 57.861 39.130 0.00 0.00 39.19 3.01
1153 2852 4.441415 GCAGATGGAGTATTTCGTAAGTCG 59.559 45.833 0.00 0.00 41.41 4.18
1924 3789 3.206150 TCAAGAAAGAACAGAGGTGCAC 58.794 45.455 8.80 8.80 0.00 4.57
2260 4137 0.179113 GTTGTGTTGTTGGGTGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
2675 6382 3.737559 TTGGTAGGATGATTTGGCAGT 57.262 42.857 0.00 0.00 0.00 4.40
3121 6837 2.037847 GGCAACCCATCCCTTGCT 59.962 61.111 2.66 0.00 42.11 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.772332 AATATGTCTATTTCGTGTCCAGTTC 57.228 36.000 0.00 0.00 0.00 3.01
1 2 8.450964 CAAAATATGTCTATTTCGTGTCCAGTT 58.549 33.333 0.00 0.00 36.70 3.16
2 3 7.414098 GCAAAATATGTCTATTTCGTGTCCAGT 60.414 37.037 0.00 0.00 36.70 4.00
3 4 6.907212 GCAAAATATGTCTATTTCGTGTCCAG 59.093 38.462 0.00 0.00 36.70 3.86
4 5 6.456315 CGCAAAATATGTCTATTTCGTGTCCA 60.456 38.462 0.00 0.00 36.70 4.02
5 6 5.901884 CGCAAAATATGTCTATTTCGTGTCC 59.098 40.000 0.00 0.00 36.70 4.02
6 7 5.901884 CCGCAAAATATGTCTATTTCGTGTC 59.098 40.000 0.00 0.00 36.70 3.67
7 8 5.353123 ACCGCAAAATATGTCTATTTCGTGT 59.647 36.000 0.00 0.00 36.70 4.49
10 11 5.171337 GCAACCGCAAAATATGTCTATTTCG 59.829 40.000 0.00 0.00 36.70 3.46
11 12 5.171337 CGCAACCGCAAAATATGTCTATTTC 59.829 40.000 0.00 0.00 36.70 2.17
17 18 1.544686 CCGCAACCGCAAAATATGTC 58.455 50.000 0.00 0.00 38.40 3.06
51 52 2.488153 GGCCCAGACAAACAGATGTAAC 59.512 50.000 0.00 0.00 32.57 2.50
53 54 1.702401 TGGCCCAGACAAACAGATGTA 59.298 47.619 0.00 0.00 32.57 2.29
54 55 0.478072 TGGCCCAGACAAACAGATGT 59.522 50.000 0.00 0.00 35.90 3.06
55 56 1.619654 TTGGCCCAGACAAACAGATG 58.380 50.000 0.00 0.00 0.00 2.90
56 57 2.242043 CTTTGGCCCAGACAAACAGAT 58.758 47.619 0.00 0.00 35.43 2.90
57 58 1.691196 CTTTGGCCCAGACAAACAGA 58.309 50.000 0.00 0.00 35.43 3.41
58 59 0.032540 GCTTTGGCCCAGACAAACAG 59.967 55.000 0.00 0.00 35.43 3.16
66 67 3.365265 GTGTCCGCTTTGGCCCAG 61.365 66.667 0.00 0.00 37.80 4.45
140 141 2.536761 TGATTGGACGAAAGAACGGT 57.463 45.000 0.00 0.00 37.61 4.83
204 1882 9.275398 ACGTGGTTGTTGTTAAAGATTAGATTA 57.725 29.630 0.00 0.00 0.00 1.75
264 1952 1.418264 TGGAATCGTGAGTTGGGTCAA 59.582 47.619 0.00 0.00 0.00 3.18
302 1990 5.236695 AGAGTTGGTTTCTTTTCTTAGTCGC 59.763 40.000 0.00 0.00 0.00 5.19
317 2005 7.042335 CGGACAAGATAAGATAAGAGTTGGTT 58.958 38.462 0.00 0.00 0.00 3.67
397 2085 6.380846 CCTGAACCTGATCCATCCAAATTAAA 59.619 38.462 0.00 0.00 0.00 1.52
398 2086 5.893255 CCTGAACCTGATCCATCCAAATTAA 59.107 40.000 0.00 0.00 0.00 1.40
399 2087 5.044179 ACCTGAACCTGATCCATCCAAATTA 60.044 40.000 0.00 0.00 0.00 1.40
400 2088 4.264532 ACCTGAACCTGATCCATCCAAATT 60.265 41.667 0.00 0.00 0.00 1.82
401 2089 3.270433 ACCTGAACCTGATCCATCCAAAT 59.730 43.478 0.00 0.00 0.00 2.32
402 2090 2.649312 ACCTGAACCTGATCCATCCAAA 59.351 45.455 0.00 0.00 0.00 3.28
403 2091 2.278245 ACCTGAACCTGATCCATCCAA 58.722 47.619 0.00 0.00 0.00 3.53
404 2092 1.971149 ACCTGAACCTGATCCATCCA 58.029 50.000 0.00 0.00 0.00 3.41
405 2093 2.648059 CAACCTGAACCTGATCCATCC 58.352 52.381 0.00 0.00 0.00 3.51
406 2094 2.019984 GCAACCTGAACCTGATCCATC 58.980 52.381 0.00 0.00 0.00 3.51
407 2095 1.341383 GGCAACCTGAACCTGATCCAT 60.341 52.381 0.00 0.00 0.00 3.41
408 2096 0.038166 GGCAACCTGAACCTGATCCA 59.962 55.000 0.00 0.00 0.00 3.41
409 2097 0.038166 TGGCAACCTGAACCTGATCC 59.962 55.000 0.00 0.00 0.00 3.36
410 2098 1.747355 CATGGCAACCTGAACCTGATC 59.253 52.381 0.00 0.00 33.48 2.92
411 2099 1.355381 TCATGGCAACCTGAACCTGAT 59.645 47.619 0.00 0.00 38.36 2.90
412 2100 0.770499 TCATGGCAACCTGAACCTGA 59.230 50.000 0.00 0.00 38.36 3.86
413 2101 0.883833 GTCATGGCAACCTGAACCTG 59.116 55.000 0.00 0.00 43.14 4.00
414 2102 0.773644 AGTCATGGCAACCTGAACCT 59.226 50.000 0.00 0.00 43.14 3.50
415 2103 1.168714 GAGTCATGGCAACCTGAACC 58.831 55.000 0.00 0.00 43.14 3.62
416 2104 1.537202 GTGAGTCATGGCAACCTGAAC 59.463 52.381 0.00 0.00 43.14 3.18
417 2105 1.877680 CGTGAGTCATGGCAACCTGAA 60.878 52.381 0.00 0.00 43.14 3.02
418 2106 0.320683 CGTGAGTCATGGCAACCTGA 60.321 55.000 0.00 0.00 39.04 3.86
419 2107 0.320683 TCGTGAGTCATGGCAACCTG 60.321 55.000 12.42 0.00 0.00 4.00
420 2108 0.036952 CTCGTGAGTCATGGCAACCT 60.037 55.000 12.42 0.00 0.00 3.50
421 2109 0.320771 ACTCGTGAGTCATGGCAACC 60.321 55.000 12.42 0.00 36.92 3.77
422 2110 0.792640 CACTCGTGAGTCATGGCAAC 59.207 55.000 12.42 0.00 40.20 4.17
423 2111 0.950555 GCACTCGTGAGTCATGGCAA 60.951 55.000 12.42 0.00 40.20 4.52
424 2112 1.374631 GCACTCGTGAGTCATGGCA 60.375 57.895 12.42 0.00 40.20 4.92
425 2113 2.103042 GGCACTCGTGAGTCATGGC 61.103 63.158 12.42 7.34 40.20 4.40
426 2114 1.448540 GGGCACTCGTGAGTCATGG 60.449 63.158 12.42 5.98 40.20 3.66
427 2115 0.459237 GAGGGCACTCGTGAGTCATG 60.459 60.000 0.00 5.96 40.20 3.07
428 2116 1.893786 GAGGGCACTCGTGAGTCAT 59.106 57.895 0.00 0.00 40.20 3.06
429 2117 3.366629 GAGGGCACTCGTGAGTCA 58.633 61.111 0.00 0.00 40.20 3.41
437 2125 7.445569 AAAGTAAACTTTTGCGAGGGCACTC 62.446 44.000 5.68 5.68 43.07 3.51
438 2126 5.704855 AAAGTAAACTTTTGCGAGGGCACT 61.705 41.667 2.24 0.00 43.07 4.40
439 2127 3.490249 AAAGTAAACTTTTGCGAGGGCAC 60.490 43.478 2.24 0.00 43.07 5.01
440 2128 2.691011 AAAGTAAACTTTTGCGAGGGCA 59.309 40.909 2.24 0.00 43.07 5.36
441 2129 3.004419 AGAAAGTAAACTTTTGCGAGGGC 59.996 43.478 9.35 0.00 45.37 5.19
442 2130 4.830826 AGAAAGTAAACTTTTGCGAGGG 57.169 40.909 9.35 0.00 45.37 4.30
443 2131 4.441087 GCAAGAAAGTAAACTTTTGCGAGG 59.559 41.667 13.54 3.04 45.37 4.63
444 2132 5.034152 TGCAAGAAAGTAAACTTTTGCGAG 58.966 37.500 19.57 8.10 45.53 5.03
445 2133 4.987832 TGCAAGAAAGTAAACTTTTGCGA 58.012 34.783 19.57 11.10 45.53 5.10
446 2134 5.659426 CATGCAAGAAAGTAAACTTTTGCG 58.341 37.500 19.57 8.94 45.53 4.85
447 2135 5.006552 TGCATGCAAGAAAGTAAACTTTTGC 59.993 36.000 20.30 18.72 45.37 3.68
448 2136 6.586868 TGCATGCAAGAAAGTAAACTTTTG 57.413 33.333 20.30 6.30 45.37 2.44
449 2137 7.212274 AGATGCATGCAAGAAAGTAAACTTTT 58.788 30.769 26.68 1.01 45.37 2.27
451 2139 6.336842 AGATGCATGCAAGAAAGTAAACTT 57.663 33.333 26.68 2.31 37.91 2.66
452 2140 5.972107 AGATGCATGCAAGAAAGTAAACT 57.028 34.783 26.68 2.55 0.00 2.66
453 2141 6.183359 CGAAAGATGCATGCAAGAAAGTAAAC 60.183 38.462 26.68 7.75 0.00 2.01
454 2142 5.858049 CGAAAGATGCATGCAAGAAAGTAAA 59.142 36.000 26.68 0.00 0.00 2.01
455 2143 5.393124 CGAAAGATGCATGCAAGAAAGTAA 58.607 37.500 26.68 0.00 0.00 2.24
456 2144 4.672542 GCGAAAGATGCATGCAAGAAAGTA 60.673 41.667 26.68 0.00 0.00 2.24
457 2145 3.829948 CGAAAGATGCATGCAAGAAAGT 58.170 40.909 26.68 6.72 0.00 2.66
458 2146 2.597305 GCGAAAGATGCATGCAAGAAAG 59.403 45.455 26.68 15.26 0.00 2.62
459 2147 2.598589 GCGAAAGATGCATGCAAGAAA 58.401 42.857 26.68 0.00 0.00 2.52
460 2148 1.135315 GGCGAAAGATGCATGCAAGAA 60.135 47.619 26.68 0.00 0.00 2.52
461 2149 0.452987 GGCGAAAGATGCATGCAAGA 59.547 50.000 26.68 0.33 0.00 3.02
462 2150 0.526954 GGGCGAAAGATGCATGCAAG 60.527 55.000 26.68 12.61 0.00 4.01
463 2151 0.966875 AGGGCGAAAGATGCATGCAA 60.967 50.000 26.68 8.49 0.00 4.08
464 2152 0.966875 AAGGGCGAAAGATGCATGCA 60.967 50.000 25.04 25.04 0.00 3.96
465 2153 0.174162 AAAGGGCGAAAGATGCATGC 59.826 50.000 11.82 11.82 0.00 4.06
466 2154 2.660189 AAAAGGGCGAAAGATGCATG 57.340 45.000 2.46 0.00 0.00 4.06
467 2155 2.562298 TCAAAAAGGGCGAAAGATGCAT 59.438 40.909 0.00 0.00 0.00 3.96
468 2156 1.959985 TCAAAAAGGGCGAAAGATGCA 59.040 42.857 0.00 0.00 0.00 3.96
469 2157 2.029918 AGTCAAAAAGGGCGAAAGATGC 60.030 45.455 0.00 0.00 0.00 3.91
470 2158 3.923017 AGTCAAAAAGGGCGAAAGATG 57.077 42.857 0.00 0.00 0.00 2.90
471 2159 3.756963 GGTAGTCAAAAAGGGCGAAAGAT 59.243 43.478 0.00 0.00 0.00 2.40
472 2160 3.143728 GGTAGTCAAAAAGGGCGAAAGA 58.856 45.455 0.00 0.00 0.00 2.52
473 2161 3.058224 CAGGTAGTCAAAAAGGGCGAAAG 60.058 47.826 0.00 0.00 0.00 2.62
474 2162 2.882137 CAGGTAGTCAAAAAGGGCGAAA 59.118 45.455 0.00 0.00 0.00 3.46
475 2163 2.500229 CAGGTAGTCAAAAAGGGCGAA 58.500 47.619 0.00 0.00 0.00 4.70
476 2164 1.271163 CCAGGTAGTCAAAAAGGGCGA 60.271 52.381 0.00 0.00 0.00 5.54
477 2165 1.165270 CCAGGTAGTCAAAAAGGGCG 58.835 55.000 0.00 0.00 0.00 6.13
478 2166 0.888619 GCCAGGTAGTCAAAAAGGGC 59.111 55.000 0.00 0.00 0.00 5.19
479 2167 2.162681 CAGCCAGGTAGTCAAAAAGGG 58.837 52.381 0.00 0.00 0.00 3.95
480 2168 2.162681 CCAGCCAGGTAGTCAAAAAGG 58.837 52.381 0.00 0.00 0.00 3.11
481 2169 3.140325 TCCAGCCAGGTAGTCAAAAAG 57.860 47.619 0.00 0.00 39.02 2.27
482 2170 3.420893 CATCCAGCCAGGTAGTCAAAAA 58.579 45.455 0.00 0.00 39.02 1.94
483 2171 2.879756 GCATCCAGCCAGGTAGTCAAAA 60.880 50.000 0.00 0.00 39.02 2.44
484 2172 1.340017 GCATCCAGCCAGGTAGTCAAA 60.340 52.381 0.00 0.00 39.02 2.69
485 2173 0.253044 GCATCCAGCCAGGTAGTCAA 59.747 55.000 0.00 0.00 39.02 3.18
486 2174 1.907739 GCATCCAGCCAGGTAGTCA 59.092 57.895 0.00 0.00 39.02 3.41
487 2175 1.227380 CGCATCCAGCCAGGTAGTC 60.227 63.158 0.00 0.00 41.38 2.59
488 2176 2.903357 CGCATCCAGCCAGGTAGT 59.097 61.111 0.00 0.00 41.38 2.73
489 2177 2.590007 GCGCATCCAGCCAGGTAG 60.590 66.667 0.30 0.00 41.38 3.18
490 2178 2.196997 AAAGCGCATCCAGCCAGGTA 62.197 55.000 11.47 0.00 41.38 3.08
491 2179 3.574074 AAAGCGCATCCAGCCAGGT 62.574 57.895 11.47 0.00 41.38 4.00
492 2180 2.753043 AAAGCGCATCCAGCCAGG 60.753 61.111 11.47 0.00 41.38 4.45
493 2181 2.488355 CAAAGCGCATCCAGCCAG 59.512 61.111 11.47 0.00 41.38 4.85
494 2182 3.751246 GCAAAGCGCATCCAGCCA 61.751 61.111 11.47 0.00 41.38 4.75
495 2183 3.407046 GAGCAAAGCGCATCCAGCC 62.407 63.158 11.47 0.00 46.13 4.85
496 2184 1.930908 AAGAGCAAAGCGCATCCAGC 61.931 55.000 11.47 6.17 46.13 4.85
497 2185 0.524862 AAAGAGCAAAGCGCATCCAG 59.475 50.000 11.47 0.00 46.13 3.86
498 2186 0.961019 AAAAGAGCAAAGCGCATCCA 59.039 45.000 11.47 0.00 46.13 3.41
499 2187 2.919666 TAAAAGAGCAAAGCGCATCC 57.080 45.000 11.47 0.00 46.13 3.51
500 2188 4.089065 CAGTTTAAAAGAGCAAAGCGCATC 59.911 41.667 11.47 0.00 46.13 3.91
501 2189 3.983344 CAGTTTAAAAGAGCAAAGCGCAT 59.017 39.130 11.47 0.00 46.13 4.73
502 2190 3.371168 CAGTTTAAAAGAGCAAAGCGCA 58.629 40.909 11.47 0.00 46.13 6.09
503 2191 2.153817 GCAGTTTAAAAGAGCAAAGCGC 59.846 45.455 0.00 0.00 42.91 5.92
504 2192 3.423206 CAGCAGTTTAAAAGAGCAAAGCG 59.577 43.478 9.54 0.00 0.00 4.68
505 2193 3.183172 GCAGCAGTTTAAAAGAGCAAAGC 59.817 43.478 9.54 7.10 0.00 3.51
506 2194 4.614946 AGCAGCAGTTTAAAAGAGCAAAG 58.385 39.130 0.00 2.40 0.00 2.77
507 2195 4.654091 AGCAGCAGTTTAAAAGAGCAAA 57.346 36.364 0.00 0.00 0.00 3.68
508 2196 4.821805 AGTAGCAGCAGTTTAAAAGAGCAA 59.178 37.500 0.00 0.00 0.00 3.91
509 2197 4.389374 AGTAGCAGCAGTTTAAAAGAGCA 58.611 39.130 0.00 0.00 0.00 4.26
510 2198 5.639931 AGTAGTAGCAGCAGTTTAAAAGAGC 59.360 40.000 0.00 0.00 0.00 4.09
511 2199 6.311690 GGAGTAGTAGCAGCAGTTTAAAAGAG 59.688 42.308 0.00 0.00 0.00 2.85
512 2200 6.014499 AGGAGTAGTAGCAGCAGTTTAAAAGA 60.014 38.462 0.00 0.00 0.00 2.52
513 2201 6.166982 AGGAGTAGTAGCAGCAGTTTAAAAG 58.833 40.000 0.00 0.00 0.00 2.27
514 2202 6.110411 AGGAGTAGTAGCAGCAGTTTAAAA 57.890 37.500 0.00 0.00 0.00 1.52
515 2203 5.740290 AGGAGTAGTAGCAGCAGTTTAAA 57.260 39.130 0.00 0.00 0.00 1.52
516 2204 8.707796 ATATAGGAGTAGTAGCAGCAGTTTAA 57.292 34.615 0.00 0.00 0.00 1.52
517 2205 9.803507 TTATATAGGAGTAGTAGCAGCAGTTTA 57.196 33.333 0.00 0.00 0.00 2.01
518 2206 8.707796 TTATATAGGAGTAGTAGCAGCAGTTT 57.292 34.615 0.00 0.00 0.00 2.66
519 2207 8.578151 GTTTATATAGGAGTAGTAGCAGCAGTT 58.422 37.037 0.00 0.00 0.00 3.16
520 2208 7.945664 AGTTTATATAGGAGTAGTAGCAGCAGT 59.054 37.037 0.00 0.00 0.00 4.40
521 2209 8.343168 AGTTTATATAGGAGTAGTAGCAGCAG 57.657 38.462 0.00 0.00 0.00 4.24
522 2210 8.577296 CAAGTTTATATAGGAGTAGTAGCAGCA 58.423 37.037 0.00 0.00 0.00 4.41
523 2211 7.542824 GCAAGTTTATATAGGAGTAGTAGCAGC 59.457 40.741 0.00 0.00 0.00 5.25
524 2212 8.577296 TGCAAGTTTATATAGGAGTAGTAGCAG 58.423 37.037 0.00 0.00 0.00 4.24
525 2213 8.473358 TGCAAGTTTATATAGGAGTAGTAGCA 57.527 34.615 0.00 0.00 0.00 3.49
526 2214 9.930693 ATTGCAAGTTTATATAGGAGTAGTAGC 57.069 33.333 4.94 0.00 0.00 3.58
537 2225 9.444534 CGCACATGTAAATTGCAAGTTTATATA 57.555 29.630 18.18 0.00 35.93 0.86
538 2226 7.043458 GCGCACATGTAAATTGCAAGTTTATAT 60.043 33.333 18.18 14.81 35.93 0.86
539 2227 6.252441 GCGCACATGTAAATTGCAAGTTTATA 59.748 34.615 18.18 13.42 35.93 0.98
540 2228 5.062058 GCGCACATGTAAATTGCAAGTTTAT 59.938 36.000 18.18 9.95 35.93 1.40
541 2229 4.384247 GCGCACATGTAAATTGCAAGTTTA 59.616 37.500 18.18 12.49 35.93 2.01
542 2230 3.184178 GCGCACATGTAAATTGCAAGTTT 59.816 39.130 18.18 13.41 35.93 2.66
543 2231 2.730928 GCGCACATGTAAATTGCAAGTT 59.269 40.909 17.11 17.11 35.93 2.66
544 2232 2.288091 TGCGCACATGTAAATTGCAAGT 60.288 40.909 5.66 0.00 35.93 3.16
545 2233 2.326664 TGCGCACATGTAAATTGCAAG 58.673 42.857 5.66 0.00 35.93 4.01
546 2234 2.428888 TGCGCACATGTAAATTGCAA 57.571 40.000 5.66 0.00 35.93 4.08
547 2235 2.164017 AGATGCGCACATGTAAATTGCA 59.836 40.909 14.90 5.07 36.35 4.08
548 2236 2.801063 AGATGCGCACATGTAAATTGC 58.199 42.857 14.90 0.00 36.35 3.56
549 2237 5.572211 ACTTAGATGCGCACATGTAAATTG 58.428 37.500 14.90 0.00 40.39 2.32
550 2238 5.818136 ACTTAGATGCGCACATGTAAATT 57.182 34.783 14.90 0.00 40.39 1.82
551 2239 5.818136 AACTTAGATGCGCACATGTAAAT 57.182 34.783 14.90 0.00 40.39 1.40
552 2240 6.674519 GCTTAACTTAGATGCGCACATGTAAA 60.675 38.462 14.90 0.38 40.39 2.01
553 2241 5.220586 GCTTAACTTAGATGCGCACATGTAA 60.221 40.000 14.90 6.31 39.11 2.41
554 2242 4.270084 GCTTAACTTAGATGCGCACATGTA 59.730 41.667 14.90 0.00 36.35 2.29
555 2243 3.063997 GCTTAACTTAGATGCGCACATGT 59.936 43.478 14.90 6.72 36.35 3.21
556 2244 3.546815 GGCTTAACTTAGATGCGCACATG 60.547 47.826 14.90 6.02 36.35 3.21
557 2245 2.614057 GGCTTAACTTAGATGCGCACAT 59.386 45.455 14.90 6.87 39.98 3.21
558 2246 2.006888 GGCTTAACTTAGATGCGCACA 58.993 47.619 14.90 0.00 0.00 4.57
559 2247 2.006888 TGGCTTAACTTAGATGCGCAC 58.993 47.619 14.90 7.11 0.00 5.34
560 2248 2.394930 TGGCTTAACTTAGATGCGCA 57.605 45.000 14.96 14.96 0.00 6.09
561 2249 2.224314 GGATGGCTTAACTTAGATGCGC 59.776 50.000 0.00 0.00 0.00 6.09
562 2250 3.248602 GTGGATGGCTTAACTTAGATGCG 59.751 47.826 0.00 0.00 0.00 4.73
563 2251 4.455606 AGTGGATGGCTTAACTTAGATGC 58.544 43.478 0.00 0.00 0.00 3.91
564 2252 5.674525 TGAGTGGATGGCTTAACTTAGATG 58.325 41.667 0.00 0.00 0.00 2.90
565 2253 5.957771 TGAGTGGATGGCTTAACTTAGAT 57.042 39.130 0.00 0.00 0.00 1.98
566 2254 5.338381 CCTTGAGTGGATGGCTTAACTTAGA 60.338 44.000 0.00 0.00 0.00 2.10
567 2255 4.878397 CCTTGAGTGGATGGCTTAACTTAG 59.122 45.833 0.00 0.00 0.00 2.18
568 2256 4.324254 CCCTTGAGTGGATGGCTTAACTTA 60.324 45.833 0.00 0.00 0.00 2.24
569 2257 3.562176 CCCTTGAGTGGATGGCTTAACTT 60.562 47.826 0.00 0.00 0.00 2.66
570 2258 2.025887 CCCTTGAGTGGATGGCTTAACT 60.026 50.000 0.00 0.00 0.00 2.24
571 2259 2.369394 CCCTTGAGTGGATGGCTTAAC 58.631 52.381 0.00 0.00 0.00 2.01
572 2260 1.340991 GCCCTTGAGTGGATGGCTTAA 60.341 52.381 0.00 0.00 39.05 1.85
573 2261 0.255890 GCCCTTGAGTGGATGGCTTA 59.744 55.000 0.00 0.00 39.05 3.09
574 2262 1.000396 GCCCTTGAGTGGATGGCTT 60.000 57.895 0.00 0.00 39.05 4.35
575 2263 2.679716 GCCCTTGAGTGGATGGCT 59.320 61.111 0.00 0.00 39.05 4.75
576 2264 1.751927 CAGCCCTTGAGTGGATGGC 60.752 63.158 0.00 0.00 42.48 4.40
577 2265 0.549950 ATCAGCCCTTGAGTGGATGG 59.450 55.000 0.00 0.00 39.73 3.51
578 2266 1.211212 TGATCAGCCCTTGAGTGGATG 59.789 52.381 0.00 0.00 39.68 3.51
579 2267 1.489649 CTGATCAGCCCTTGAGTGGAT 59.510 52.381 10.38 0.00 39.68 3.41
580 2268 0.907486 CTGATCAGCCCTTGAGTGGA 59.093 55.000 10.38 0.00 39.68 4.02
581 2269 0.617413 ACTGATCAGCCCTTGAGTGG 59.383 55.000 22.83 0.00 39.68 4.00
582 2270 1.002888 ACACTGATCAGCCCTTGAGTG 59.997 52.381 22.83 13.46 39.68 3.51
583 2271 1.002888 CACACTGATCAGCCCTTGAGT 59.997 52.381 22.83 7.18 39.68 3.41
584 2272 1.735386 CACACTGATCAGCCCTTGAG 58.265 55.000 22.83 8.21 39.68 3.02
585 2273 0.321919 GCACACTGATCAGCCCTTGA 60.322 55.000 22.83 0.00 40.85 3.02
586 2274 1.642037 CGCACACTGATCAGCCCTTG 61.642 60.000 22.83 15.18 0.00 3.61
587 2275 1.376424 CGCACACTGATCAGCCCTT 60.376 57.895 22.83 0.00 0.00 3.95
588 2276 2.267006 CGCACACTGATCAGCCCT 59.733 61.111 22.83 0.00 0.00 5.19
589 2277 3.503363 GCGCACACTGATCAGCCC 61.503 66.667 22.83 7.44 0.00 5.19
590 2278 2.110967 ATGCGCACACTGATCAGCC 61.111 57.895 22.83 7.79 0.00 4.85
591 2279 1.062047 CATGCGCACACTGATCAGC 59.938 57.895 22.83 9.00 0.00 4.26
592 2280 1.062047 GCATGCGCACACTGATCAG 59.938 57.895 21.37 21.37 38.36 2.90
593 2281 1.671704 TGCATGCGCACACTGATCA 60.672 52.632 14.90 0.00 45.36 2.92
594 2282 3.180423 TGCATGCGCACACTGATC 58.820 55.556 14.90 0.00 45.36 2.92
603 2291 1.586578 CACAAGAATCAATGCATGCGC 59.413 47.619 14.09 0.00 39.24 6.09
604 2292 1.586578 GCACAAGAATCAATGCATGCG 59.413 47.619 14.09 0.00 38.00 4.73
605 2293 2.612604 TGCACAAGAATCAATGCATGC 58.387 42.857 11.82 11.82 42.92 4.06
609 2297 2.603110 CAGCATGCACAAGAATCAATGC 59.397 45.455 21.98 0.00 38.59 3.56
624 2312 6.000219 AGGTAAGGAACATATTAGCAGCATG 59.000 40.000 0.00 0.00 40.87 4.06
625 2313 6.043706 AGAGGTAAGGAACATATTAGCAGCAT 59.956 38.462 0.00 0.00 33.00 3.79
626 2314 5.366768 AGAGGTAAGGAACATATTAGCAGCA 59.633 40.000 0.00 0.00 33.00 4.41
627 2315 5.698545 CAGAGGTAAGGAACATATTAGCAGC 59.301 44.000 0.00 0.00 33.00 5.25
628 2316 7.055667 TCAGAGGTAAGGAACATATTAGCAG 57.944 40.000 0.00 0.00 33.00 4.24
629 2317 7.344612 TCTTCAGAGGTAAGGAACATATTAGCA 59.655 37.037 0.00 0.00 33.00 3.49
630 2318 7.727181 TCTTCAGAGGTAAGGAACATATTAGC 58.273 38.462 0.00 0.00 0.00 3.09
631 2319 9.535878 GTTCTTCAGAGGTAAGGAACATATTAG 57.464 37.037 0.00 0.00 0.00 1.73
632 2320 8.195436 CGTTCTTCAGAGGTAAGGAACATATTA 58.805 37.037 0.00 0.00 0.00 0.98
633 2321 7.042335 CGTTCTTCAGAGGTAAGGAACATATT 58.958 38.462 0.00 0.00 0.00 1.28
634 2322 6.380274 TCGTTCTTCAGAGGTAAGGAACATAT 59.620 38.462 0.00 0.00 0.00 1.78
635 2323 5.713389 TCGTTCTTCAGAGGTAAGGAACATA 59.287 40.000 0.00 0.00 0.00 2.29
636 2324 4.527038 TCGTTCTTCAGAGGTAAGGAACAT 59.473 41.667 0.00 0.00 0.00 2.71
637 2325 3.893200 TCGTTCTTCAGAGGTAAGGAACA 59.107 43.478 0.00 0.00 0.00 3.18
638 2326 4.022155 ACTCGTTCTTCAGAGGTAAGGAAC 60.022 45.833 0.00 0.00 38.72 3.62
639 2327 4.150359 ACTCGTTCTTCAGAGGTAAGGAA 58.850 43.478 0.00 0.00 38.72 3.36
640 2328 3.764218 ACTCGTTCTTCAGAGGTAAGGA 58.236 45.455 0.00 0.00 38.72 3.36
641 2329 5.640189 TTACTCGTTCTTCAGAGGTAAGG 57.360 43.478 0.00 0.00 38.72 2.69
642 2330 7.273815 GTCAATTACTCGTTCTTCAGAGGTAAG 59.726 40.741 0.00 0.00 38.72 2.34
643 2331 7.088905 GTCAATTACTCGTTCTTCAGAGGTAA 58.911 38.462 0.00 0.00 38.72 2.85
644 2332 6.208007 TGTCAATTACTCGTTCTTCAGAGGTA 59.792 38.462 0.00 0.00 38.72 3.08
645 2333 5.010719 TGTCAATTACTCGTTCTTCAGAGGT 59.989 40.000 0.00 0.00 38.72 3.85
646 2334 5.470368 TGTCAATTACTCGTTCTTCAGAGG 58.530 41.667 0.00 0.00 38.72 3.69
647 2335 7.042725 TGTTTGTCAATTACTCGTTCTTCAGAG 60.043 37.037 0.00 0.00 40.16 3.35
648 2336 6.759356 TGTTTGTCAATTACTCGTTCTTCAGA 59.241 34.615 0.00 0.00 0.00 3.27
649 2337 6.943981 TGTTTGTCAATTACTCGTTCTTCAG 58.056 36.000 0.00 0.00 0.00 3.02
650 2338 6.912203 TGTTTGTCAATTACTCGTTCTTCA 57.088 33.333 0.00 0.00 0.00 3.02
651 2339 7.407337 AGTTGTTTGTCAATTACTCGTTCTTC 58.593 34.615 0.00 0.00 38.38 2.87
652 2340 7.316544 AGTTGTTTGTCAATTACTCGTTCTT 57.683 32.000 0.00 0.00 38.38 2.52
653 2341 6.920569 AGTTGTTTGTCAATTACTCGTTCT 57.079 33.333 0.00 0.00 38.38 3.01
654 2342 7.067728 GGTAGTTGTTTGTCAATTACTCGTTC 58.932 38.462 11.04 0.00 43.79 3.95
655 2343 6.539464 TGGTAGTTGTTTGTCAATTACTCGTT 59.461 34.615 11.04 0.00 43.79 3.85
656 2344 6.018507 GTGGTAGTTGTTTGTCAATTACTCGT 60.019 38.462 11.04 0.00 43.79 4.18
672 2360 4.376615 CGGTTACGTGAAATGTGGTAGTTG 60.377 45.833 0.00 0.00 36.26 3.16
796 2484 6.971527 TCTGTCAGAAACTCGTTTAAAACA 57.028 33.333 0.00 0.49 32.11 2.83
1153 2852 3.006110 CAGATGAGAGGAGAGAATGAGCC 59.994 52.174 0.00 0.00 0.00 4.70
1861 3726 0.731417 CTCAATCTTTGCCTGCTCCG 59.269 55.000 0.00 0.00 0.00 4.63
1924 3789 0.252479 ATCAGCTTGACTCTGCAGGG 59.748 55.000 13.44 13.44 0.00 4.45
2260 4137 1.884579 CATTACAGATCAGGGGCATGC 59.115 52.381 9.90 9.90 0.00 4.06
2405 6068 9.160496 TGTAATGCAAGTTTCAGTTTCAATTTT 57.840 25.926 0.00 0.00 0.00 1.82
2409 6072 8.081633 CCTATGTAATGCAAGTTTCAGTTTCAA 58.918 33.333 0.00 0.00 0.00 2.69
2675 6382 2.166459 CGAAGAACAGGAGGTGCAGATA 59.834 50.000 0.00 0.00 0.00 1.98
3121 6837 2.922955 TGGATCAACCCATTCCCAACTA 59.077 45.455 0.00 0.00 38.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.