Multiple sequence alignment - TraesCS2A01G455300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G455300 chr2A 100.000 7888 0 0 1 7888 703970218 703978105 0.000000e+00 14567.0
1 TraesCS2A01G455300 chr2A 96.970 330 9 1 6393 6721 18627530 18627201 3.220000e-153 553.0
2 TraesCS2A01G455300 chr2A 91.803 61 3 1 7459 7517 21603783 21603843 5.070000e-12 84.2
3 TraesCS2A01G455300 chr2A 100.000 45 0 0 1 45 244255715 244255759 5.070000e-12 84.2
4 TraesCS2A01G455300 chr2D 93.045 6830 287 67 757 7451 563937392 563944168 0.000000e+00 9808.0
5 TraesCS2A01G455300 chr2D 81.536 677 53 31 46 719 563936495 563937102 7.110000e-135 492.0
6 TraesCS2A01G455300 chr2D 86.893 412 28 8 7496 7885 563944170 563944577 9.400000e-119 438.0
7 TraesCS2A01G455300 chr2D 100.000 45 0 0 1 45 554025563 554025519 5.070000e-12 84.2
8 TraesCS2A01G455300 chr2D 100.000 43 0 0 7461 7503 325754060 325754102 6.560000e-11 80.5
9 TraesCS2A01G455300 chr2D 95.349 43 2 0 1543 1585 563938159 563938201 1.420000e-07 69.4
10 TraesCS2A01G455300 chr2B 93.541 6595 263 58 945 7451 674299776 674306295 0.000000e+00 9668.0
11 TraesCS2A01G455300 chr2B 87.624 404 20 9 477 859 674299028 674299422 7.260000e-120 442.0
12 TraesCS2A01G455300 chr2B 91.290 310 11 4 7500 7793 674306502 674306811 7.370000e-110 409.0
13 TraesCS2A01G455300 chr2B 87.857 280 27 3 46 320 674230147 674230424 9.870000e-84 322.0
14 TraesCS2A01G455300 chr2B 93.478 92 5 1 317 407 674297054 674297145 1.380000e-27 135.0
15 TraesCS2A01G455300 chr2B 89.873 79 8 0 414 492 674297129 674297207 1.400000e-17 102.0
16 TraesCS2A01G455300 chr7B 88.743 382 35 5 3189 3564 11017374 11016995 2.010000e-125 460.0
17 TraesCS2A01G455300 chr6A 87.240 384 39 6 3189 3564 105054412 105054793 5.660000e-116 429.0
18 TraesCS2A01G455300 chr6A 85.551 263 31 4 4924 5180 565419399 565419138 1.300000e-67 268.0
19 TraesCS2A01G455300 chr6A 100.000 45 0 0 1 45 213884978 213885022 5.070000e-12 84.2
20 TraesCS2A01G455300 chr4D 83.721 387 44 6 3197 3564 81361824 81362210 1.630000e-91 348.0
21 TraesCS2A01G455300 chr4D 89.041 73 5 1 3745 3814 370369227 370369299 3.920000e-13 87.9
22 TraesCS2A01G455300 chr4D 97.826 46 1 0 1 46 172684020 172683975 6.560000e-11 80.5
23 TraesCS2A01G455300 chr4D 97.778 45 1 0 1 45 172700216 172700172 2.360000e-10 78.7
24 TraesCS2A01G455300 chr5D 82.776 389 46 11 3189 3558 25470369 25470755 2.120000e-85 327.0
25 TraesCS2A01G455300 chr5D 82.051 273 33 7 3306 3562 25470759 25471031 1.330000e-52 219.0
26 TraesCS2A01G455300 chr5B 80.841 428 51 19 5526 5952 655305663 655306060 2.760000e-79 307.0
27 TraesCS2A01G455300 chr1B 80.269 446 50 21 5579 6015 60577581 60577165 1.290000e-77 302.0
28 TraesCS2A01G455300 chr1B 91.358 162 11 3 5792 5952 51627931 51627772 1.330000e-52 219.0
29 TraesCS2A01G455300 chr7A 90.476 84 5 2 3733 3813 124795775 124795692 3.010000e-19 108.0
30 TraesCS2A01G455300 chr7A 98.039 51 1 0 7459 7509 477234890 477234840 1.090000e-13 89.8
31 TraesCS2A01G455300 chr1D 87.778 90 8 2 3728 3814 295970512 295970601 1.400000e-17 102.0
32 TraesCS2A01G455300 chr1D 94.545 55 1 2 7459 7513 31301679 31301731 5.070000e-12 84.2
33 TraesCS2A01G455300 chr1D 97.826 46 1 0 1 46 318760552 318760597 6.560000e-11 80.5
34 TraesCS2A01G455300 chr1D 97.826 46 1 0 1 46 422513906 422513861 6.560000e-11 80.5
35 TraesCS2A01G455300 chr1D 97.778 45 1 0 1 45 318747833 318747877 2.360000e-10 78.7
36 TraesCS2A01G455300 chr4A 88.095 84 7 2 3734 3814 342448711 342448628 6.520000e-16 97.1
37 TraesCS2A01G455300 chr4A 86.747 83 8 2 3734 3813 32064572 32064490 1.090000e-13 89.8
38 TraesCS2A01G455300 chr7D 96.226 53 1 1 7461 7513 141292128 141292077 1.410000e-12 86.1
39 TraesCS2A01G455300 chr7D 93.103 58 2 2 7461 7516 441864079 441864136 5.070000e-12 84.2
40 TraesCS2A01G455300 chr6D 96.226 53 1 1 7459 7511 65497128 65497179 1.410000e-12 86.1
41 TraesCS2A01G455300 chr1A 94.643 56 2 1 7459 7514 571275497 571275551 1.410000e-12 86.1
42 TraesCS2A01G455300 chr1A 100.000 45 0 0 1 45 328058401 328058445 5.070000e-12 84.2
43 TraesCS2A01G455300 chr5A 91.667 60 3 1 7459 7516 629925008 629924949 1.820000e-11 82.4
44 TraesCS2A01G455300 chr4B 86.486 74 7 2 3734 3804 406681542 406681615 2.360000e-10 78.7
45 TraesCS2A01G455300 chr6B 83.750 80 10 2 3738 3814 171703710 171703789 1.100000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G455300 chr2A 703970218 703978105 7887 False 14567.0 14567 100.0000 1 7888 1 chr2A.!!$F3 7887
1 TraesCS2A01G455300 chr2D 563936495 563944168 7673 False 5150.0 9808 87.2905 46 7451 2 chr2D.!!$F4 7405
2 TraesCS2A01G455300 chr2B 674297054 674306811 9757 False 2151.2 9668 91.1612 317 7793 5 chr2B.!!$F2 7476
3 TraesCS2A01G455300 chr5D 25470369 25471031 662 False 273.0 327 82.4135 3189 3562 2 chr5D.!!$F1 373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 301 0.043032 TACCCCCAACTCCCGTGTAT 59.957 55.000 0.00 0.00 0.00 2.29 F
305 309 0.107214 ACTCCCGTGTATTGCCATGG 60.107 55.000 7.63 7.63 40.57 3.66 F
1112 3506 0.533755 CAATGTGCCTCCGGATCTCC 60.534 60.000 3.57 0.00 0.00 3.71 F
2121 4586 0.585357 CGCTTGGTCTATGCATCTGC 59.415 55.000 0.19 0.00 42.50 4.26 F
2952 5422 0.399075 TCCGTTTCTTGGGAAGGACC 59.601 55.000 0.00 0.00 38.08 4.46 F
4177 6950 4.199310 GGCAGCTACAATTTATCCTGTCA 58.801 43.478 0.00 0.00 0.00 3.58 F
4973 7770 0.325933 TGTTGATCTGAGGCAGGGTG 59.674 55.000 0.00 0.00 31.51 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 4220 0.602638 TCCGCATTCGAGCACAGTTT 60.603 50.000 0.00 0.00 38.10 2.66 R
2171 4636 3.181485 GGTCTGTACATGTACCAGAGAGC 60.181 52.174 28.67 26.87 35.26 4.09 R
2643 5110 0.043334 AGGAGGAAGCTTAGGCCAGA 59.957 55.000 5.01 0.00 39.73 3.86 R
4103 6876 1.202806 TGTCCTTTTGCCTCACTCCTG 60.203 52.381 0.00 0.00 0.00 3.86 R
4901 7698 0.107831 TGCACCTTACAAAGACCGCT 59.892 50.000 0.00 0.00 0.00 5.52 R
5367 8165 0.107945 CTGTACTCAGGGCCTGAAGC 60.108 60.000 34.25 25.54 40.18 3.86 R
6914 9718 0.514691 GCAGAGAAACAGGTGCTTCG 59.485 55.000 0.00 0.00 32.97 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.049402 GTCAGGCCTATGACCCTACC 58.951 60.000 3.98 0.00 43.12 3.18
25 26 0.941963 TCAGGCCTATGACCCTACCT 59.058 55.000 3.98 0.00 0.00 3.08
26 27 1.294068 TCAGGCCTATGACCCTACCTT 59.706 52.381 3.98 0.00 0.00 3.50
27 28 2.520980 TCAGGCCTATGACCCTACCTTA 59.479 50.000 3.98 0.00 0.00 2.69
28 29 2.900546 CAGGCCTATGACCCTACCTTAG 59.099 54.545 3.98 0.00 0.00 2.18
29 30 2.158143 AGGCCTATGACCCTACCTTAGG 60.158 54.545 1.29 0.00 45.81 2.69
30 31 2.427445 GGCCTATGACCCTACCTTAGGT 60.427 54.545 9.57 9.57 44.73 3.08
31 32 3.181414 GGCCTATGACCCTACCTTAGGTA 60.181 52.174 11.02 11.02 44.73 3.08
32 33 3.831333 GCCTATGACCCTACCTTAGGTAC 59.169 52.174 7.09 0.00 44.73 3.34
33 34 4.693621 GCCTATGACCCTACCTTAGGTACA 60.694 50.000 7.09 4.52 44.73 2.90
34 35 5.652324 CCTATGACCCTACCTTAGGTACAT 58.348 45.833 7.09 11.46 44.73 2.29
35 36 6.752092 GCCTATGACCCTACCTTAGGTACATA 60.752 46.154 7.09 11.95 44.73 2.29
36 37 6.890814 CCTATGACCCTACCTTAGGTACATAG 59.109 46.154 24.85 24.85 45.98 2.23
37 38 4.477249 TGACCCTACCTTAGGTACATAGC 58.523 47.826 7.09 0.00 44.73 2.97
38 39 4.169461 TGACCCTACCTTAGGTACATAGCT 59.831 45.833 7.09 0.00 44.73 3.32
39 40 5.146298 GACCCTACCTTAGGTACATAGCTT 58.854 45.833 7.09 0.00 44.73 3.74
40 41 5.146298 ACCCTACCTTAGGTACATAGCTTC 58.854 45.833 7.09 0.00 44.73 3.86
41 42 5.145564 CCCTACCTTAGGTACATAGCTTCA 58.854 45.833 7.09 0.00 44.73 3.02
42 43 5.780793 CCCTACCTTAGGTACATAGCTTCAT 59.219 44.000 7.09 0.00 44.73 2.57
43 44 6.071278 CCCTACCTTAGGTACATAGCTTCATC 60.071 46.154 7.09 0.00 44.73 2.92
44 45 6.493802 CCTACCTTAGGTACATAGCTTCATCA 59.506 42.308 7.09 0.00 41.18 3.07
45 46 6.412362 ACCTTAGGTACATAGCTTCATCAG 57.588 41.667 0.15 0.00 32.11 2.90
46 47 5.221541 ACCTTAGGTACATAGCTTCATCAGC 60.222 44.000 0.15 0.00 41.21 4.26
70 71 3.491598 CTTGGGGTCAAGCCGGTGT 62.492 63.158 1.90 0.00 43.10 4.16
82 83 2.351276 CGGTGTTGAAGGAGGGGG 59.649 66.667 0.00 0.00 0.00 5.40
98 99 1.077787 GGGGAATGTGATGGACGCA 60.078 57.895 0.00 0.00 43.33 5.24
119 120 1.910772 CACGGGGGCCAAATCCAAA 60.911 57.895 4.39 0.00 0.00 3.28
122 123 1.299648 GGGGGCCAAATCCAAAAGC 59.700 57.895 4.39 0.00 0.00 3.51
124 125 0.620030 GGGGCCAAATCCAAAAGCAT 59.380 50.000 4.39 0.00 0.00 3.79
135 136 0.810648 CAAAAGCATAGCGAAGGCCA 59.189 50.000 5.01 0.00 41.24 5.36
136 137 1.406539 CAAAAGCATAGCGAAGGCCAT 59.593 47.619 5.01 0.00 41.24 4.40
148 149 2.548920 CGAAGGCCATCCCAAGAGATAC 60.549 54.545 5.01 0.00 35.39 2.24
181 185 2.522436 AGGTTCGACCCGTCCACA 60.522 61.111 0.00 0.00 39.75 4.17
184 188 1.290955 GTTCGACCCGTCCACATGA 59.709 57.895 0.00 0.00 0.00 3.07
207 211 1.133976 GCTGGGTGGATAAGTGAGCAT 60.134 52.381 0.00 0.00 0.00 3.79
211 215 0.940126 GTGGATAAGTGAGCATGCGG 59.060 55.000 13.01 0.00 0.00 5.69
213 217 0.179045 GGATAAGTGAGCATGCGGGT 60.179 55.000 13.01 0.00 0.00 5.28
214 218 0.940126 GATAAGTGAGCATGCGGGTG 59.060 55.000 13.01 0.00 0.00 4.61
215 219 0.253044 ATAAGTGAGCATGCGGGTGT 59.747 50.000 13.01 1.62 0.00 4.16
216 220 0.673333 TAAGTGAGCATGCGGGTGTG 60.673 55.000 13.01 0.00 0.00 3.82
217 221 2.669569 GTGAGCATGCGGGTGTGT 60.670 61.111 13.01 0.00 0.00 3.72
226 230 3.097672 CGGGTGTGTGTGTGTGTG 58.902 61.111 0.00 0.00 0.00 3.82
252 256 3.610114 GCATCGAGAATCTGCTCTCTCTC 60.610 52.174 0.73 0.00 39.85 3.20
253 257 3.558931 TCGAGAATCTGCTCTCTCTCT 57.441 47.619 0.00 0.00 39.85 3.10
254 258 3.466836 TCGAGAATCTGCTCTCTCTCTC 58.533 50.000 0.00 0.00 39.85 3.20
255 259 2.549754 CGAGAATCTGCTCTCTCTCTCC 59.450 54.545 0.00 0.00 39.85 3.71
256 260 2.887152 GAGAATCTGCTCTCTCTCTCCC 59.113 54.545 0.00 0.00 39.08 4.30
257 261 2.515429 AGAATCTGCTCTCTCTCTCCCT 59.485 50.000 0.00 0.00 0.00 4.20
258 262 2.664402 ATCTGCTCTCTCTCTCCCTC 57.336 55.000 0.00 0.00 0.00 4.30
259 263 1.595311 TCTGCTCTCTCTCTCCCTCT 58.405 55.000 0.00 0.00 0.00 3.69
260 264 1.490490 TCTGCTCTCTCTCTCCCTCTC 59.510 57.143 0.00 0.00 0.00 3.20
261 265 1.492176 CTGCTCTCTCTCTCCCTCTCT 59.508 57.143 0.00 0.00 0.00 3.10
262 266 1.490490 TGCTCTCTCTCTCCCTCTCTC 59.510 57.143 0.00 0.00 0.00 3.20
263 267 1.541233 GCTCTCTCTCTCCCTCTCTCG 60.541 61.905 0.00 0.00 0.00 4.04
264 268 2.039418 CTCTCTCTCTCCCTCTCTCGA 58.961 57.143 0.00 0.00 0.00 4.04
265 269 2.434336 CTCTCTCTCTCCCTCTCTCGAA 59.566 54.545 0.00 0.00 0.00 3.71
284 288 1.302667 ACCCTACCTCTCCTACCCCC 61.303 65.000 0.00 0.00 0.00 5.40
292 296 2.039951 TCCTACCCCCAACTCCCG 59.960 66.667 0.00 0.00 0.00 5.14
297 301 0.043032 TACCCCCAACTCCCGTGTAT 59.957 55.000 0.00 0.00 0.00 2.29
303 307 1.681780 CCAACTCCCGTGTATTGCCAT 60.682 52.381 0.00 0.00 0.00 4.40
305 309 0.107214 ACTCCCGTGTATTGCCATGG 60.107 55.000 7.63 7.63 40.57 3.66
373 378 7.786943 CCATCATAGATACCATACTGGGATAGT 59.213 40.741 0.00 0.00 42.42 2.12
374 379 8.637099 CATCATAGATACCATACTGGGATAGTG 58.363 40.741 0.00 0.00 42.42 2.74
402 407 9.487790 TCATTTTACGCATATTGTGATGAGATA 57.512 29.630 0.00 0.00 31.72 1.98
405 410 5.852738 ACGCATATTGTGATGAGATAAGC 57.147 39.130 0.00 0.00 31.72 3.09
406 411 5.545588 ACGCATATTGTGATGAGATAAGCT 58.454 37.500 0.00 0.00 31.72 3.74
407 412 5.994054 ACGCATATTGTGATGAGATAAGCTT 59.006 36.000 3.48 3.48 31.72 3.74
408 413 6.484643 ACGCATATTGTGATGAGATAAGCTTT 59.515 34.615 3.20 0.00 31.72 3.51
409 414 7.012704 ACGCATATTGTGATGAGATAAGCTTTT 59.987 33.333 3.20 0.00 31.72 2.27
410 415 7.859377 CGCATATTGTGATGAGATAAGCTTTTT 59.141 33.333 3.20 0.00 0.00 1.94
435 440 7.792374 TTTTGTGATGAGATAAGCTACCATC 57.208 36.000 0.00 0.00 35.47 3.51
437 442 3.923461 GTGATGAGATAAGCTACCATCGC 59.077 47.826 0.00 0.00 37.14 4.58
459 464 1.136721 CGTCGACCGTGTCATTGTTTC 60.137 52.381 10.58 0.00 32.09 2.78
507 2349 1.686325 GAGGCCAGATCCAACGGCTA 61.686 60.000 5.01 0.00 45.50 3.93
537 2379 3.762247 GGTACGGTGCGCAGGGTA 61.762 66.667 12.22 13.73 0.00 3.69
585 2427 1.667236 CAGAGCATCGGCCAACATAA 58.333 50.000 2.24 0.00 42.67 1.90
829 2945 2.040359 CCTCCTCTTCCCCTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
895 3021 1.881709 GCGCTAGGGTTTACTCCGC 60.882 63.158 8.77 0.00 35.36 5.54
1076 3470 3.425758 CGTTCGCCCTTCTTTTATGTTCC 60.426 47.826 0.00 0.00 0.00 3.62
1112 3506 0.533755 CAATGTGCCTCCGGATCTCC 60.534 60.000 3.57 0.00 0.00 3.71
1162 3556 4.129737 CGCTTCCGAGGCCGAGAA 62.130 66.667 0.00 0.53 38.22 2.87
1165 3559 3.372554 CTTCCGAGGCCGAGAACCC 62.373 68.421 0.00 0.00 38.22 4.11
1197 3591 1.609072 GTTTGAAAGTCTCCCTGTGCC 59.391 52.381 0.00 0.00 0.00 5.01
1239 3633 3.582780 ACTAGCGTGTTTAGGTTAGCAC 58.417 45.455 0.00 0.00 31.28 4.40
1263 3657 1.278238 AGTAAACTACTGATGCGCGC 58.722 50.000 27.26 27.26 37.69 6.86
1264 3658 1.135083 AGTAAACTACTGATGCGCGCT 60.135 47.619 33.29 17.95 37.69 5.92
1290 3684 1.750193 TTTGATCTGATGCGTTCCCC 58.250 50.000 0.00 0.00 0.00 4.81
1302 3697 0.963225 CGTTCCCCCATTTTTCGGTT 59.037 50.000 0.00 0.00 0.00 4.44
1305 3700 2.365941 GTTCCCCCATTTTTCGGTTCAA 59.634 45.455 0.00 0.00 0.00 2.69
1308 3703 2.093711 CCCCCATTTTTCGGTTCAATCC 60.094 50.000 0.00 0.00 0.00 3.01
1320 3715 8.897872 TTTCGGTTCAATCCTAGTATTATTCC 57.102 34.615 0.00 0.00 0.00 3.01
1354 3749 2.871022 GTCTGATGTGATGGACTGATGC 59.129 50.000 0.00 0.00 0.00 3.91
1359 3754 5.627135 TGATGTGATGGACTGATGCATTAT 58.373 37.500 0.00 0.00 36.94 1.28
1418 3825 6.645415 ACTTTACTCTGTACTGTGTATGTTGC 59.355 38.462 13.31 0.00 0.00 4.17
1443 3850 3.000080 CTGCTGTTCCGACGCGAAC 62.000 63.158 15.93 17.17 42.10 3.95
1473 3883 8.129496 TGGATTTGATTTTCTTAGGTTTACCC 57.871 34.615 0.00 0.00 36.42 3.69
1484 3895 0.746659 GGTTTACCCTGATGCCATGC 59.253 55.000 0.00 0.00 0.00 4.06
1486 3897 1.406539 GTTTACCCTGATGCCATGCTG 59.593 52.381 0.00 0.00 0.00 4.41
1488 3899 1.638679 TACCCTGATGCCATGCTGCT 61.639 55.000 0.00 0.00 0.00 4.24
1498 3909 1.796617 GCCATGCTGCTCGAATTTCAC 60.797 52.381 0.00 0.00 0.00 3.18
1518 3929 1.696832 GCGGTGCTTCGTTCTGATCC 61.697 60.000 0.00 0.00 0.00 3.36
1520 3931 1.084370 GGTGCTTCGTTCTGATCCCG 61.084 60.000 0.00 0.00 0.00 5.14
1531 3965 4.256090 GATCCCGTGCGCAATGGC 62.256 66.667 21.42 5.07 32.98 4.40
1648 4089 2.509548 TCTTCGATGTGATGGGGGATTT 59.490 45.455 0.00 0.00 0.00 2.17
1659 4100 1.264749 GGGGGATTTTGGCCTTGGAC 61.265 60.000 3.32 0.00 0.00 4.02
1667 4108 1.703411 TTGGCCTTGGACTTTTGGAG 58.297 50.000 3.32 0.00 0.00 3.86
1779 4220 6.488683 AGTTTTGCAATTACAGGCTAACTACA 59.511 34.615 0.00 0.00 35.45 2.74
1819 4277 6.565435 GCGGAACTTTAGTTTGTTTAGTCCTC 60.565 42.308 0.00 0.00 38.56 3.71
1909 4367 1.344438 CCTTGCTGTCCTGTACTGACA 59.656 52.381 15.09 15.09 40.28 3.58
1911 4369 2.749280 TGCTGTCCTGTACTGACATG 57.251 50.000 15.91 12.11 41.58 3.21
1963 4421 5.804639 TGGCTAAACACATTGTATCTGAGT 58.195 37.500 0.00 0.00 0.00 3.41
1995 4458 7.251281 GGAAGTATCATTTTAAAGTGTGAGCC 58.749 38.462 10.15 3.49 0.00 4.70
1996 4459 6.759497 AGTATCATTTTAAAGTGTGAGCCC 57.241 37.500 10.15 0.46 0.00 5.19
2040 4503 7.063544 AGTCAACTGAATTAGCGAGTATTTCAC 59.936 37.037 0.00 0.00 31.01 3.18
2121 4586 0.585357 CGCTTGGTCTATGCATCTGC 59.415 55.000 0.19 0.00 42.50 4.26
2171 4636 7.106239 ACTTGAGAACATCCAGTTAGTAATGG 58.894 38.462 5.47 5.47 41.51 3.16
2241 4706 1.964933 CGTCTTATCTCCCCTTCCTCC 59.035 57.143 0.00 0.00 0.00 4.30
2250 4715 5.193099 TCTCCCCTTCCTCCTTAAATTTG 57.807 43.478 0.00 0.00 0.00 2.32
2257 4722 7.147302 CCCCTTCCTCCTTAAATTTGAGATAGA 60.147 40.741 11.34 2.40 0.00 1.98
2457 4922 8.143897 AAACCTAGGGTTAGGAGTCCTTAGTTT 61.144 40.741 19.06 10.59 46.20 2.66
2604 5071 3.775654 CACTCCGACTCCCCAGGC 61.776 72.222 0.00 0.00 0.00 4.85
2642 5109 4.928615 CAGATTAAGGCTGATGCTAGCTAC 59.071 45.833 17.23 10.29 43.22 3.58
2643 5110 4.837860 AGATTAAGGCTGATGCTAGCTACT 59.162 41.667 17.23 0.01 43.22 2.57
2722 5189 1.003866 GTTTGTCAGTGCTCGGTTCAC 60.004 52.381 0.00 0.00 34.80 3.18
2759 5226 4.321675 GGTTGTGACCTGTGTTTTCTTGTT 60.322 41.667 0.00 0.00 42.99 2.83
2785 5252 2.004583 TCGGTCGATGGTTTCATGTC 57.995 50.000 0.00 0.00 32.98 3.06
2952 5422 0.399075 TCCGTTTCTTGGGAAGGACC 59.601 55.000 0.00 0.00 38.08 4.46
3015 5485 6.946583 GGTAAGGTTCCACTTCCTCTATTTTT 59.053 38.462 0.00 0.00 33.09 1.94
3085 5555 6.711277 TGTATCTGTTTCTGTTTATCAGGCT 58.289 36.000 0.00 0.00 43.76 4.58
3095 5565 7.062749 TCTGTTTATCAGGCTTTATCGGTAT 57.937 36.000 0.00 0.00 43.76 2.73
3579 6338 5.862323 GCAGATGCTTGCATCCATTAATTAG 59.138 40.000 26.08 10.37 43.53 1.73
3718 6477 7.064490 GTGTGTCACTTGAAAATTTTGTCCATT 59.936 33.333 8.47 0.00 0.00 3.16
3723 6482 7.282675 TCACTTGAAAATTTTGTCCATTTGCAT 59.717 29.630 8.47 0.00 30.59 3.96
3742 6501 6.252599 TGCATCATAATGTTTACTCCCTCT 57.747 37.500 0.00 0.00 35.18 3.69
3779 6538 5.292345 GTGCCGTGGTTTTAGTTCAAATTTT 59.708 36.000 0.00 0.00 0.00 1.82
3782 6541 7.548075 TGCCGTGGTTTTAGTTCAAATTTTAAA 59.452 29.630 0.00 0.00 0.00 1.52
3783 6542 8.059502 GCCGTGGTTTTAGTTCAAATTTTAAAG 58.940 33.333 0.00 0.00 0.00 1.85
3805 6572 6.976934 AGACCACAACACTTATTTTGGAAT 57.023 33.333 0.00 0.00 0.00 3.01
4068 6836 8.590204 TGCATGCATGAGATAATTCCATAAATT 58.410 29.630 30.64 0.00 40.67 1.82
4103 6876 9.797473 GTTGAAAATAAGCATAAAGAAGCAAAC 57.203 29.630 0.00 0.00 0.00 2.93
4177 6950 4.199310 GGCAGCTACAATTTATCCTGTCA 58.801 43.478 0.00 0.00 0.00 3.58
4253 7026 5.599732 ACATTTTATGTCTGCTTGCAACAA 58.400 33.333 0.00 0.00 39.92 2.83
4268 7041 7.609918 TGCTTGCAACAATAATAGAGTCCTTTA 59.390 33.333 0.00 0.00 0.00 1.85
4438 7235 4.763793 GGTGCCATGCTGAAGATTATGTAT 59.236 41.667 0.00 0.00 0.00 2.29
4503 7300 6.716628 TGTGGATTTTCTGCTCTCTTATTTGT 59.283 34.615 0.00 0.00 0.00 2.83
4758 7555 5.477984 AGCAGCAATTGAAGAACAAATAGGA 59.522 36.000 10.34 0.00 42.03 2.94
4818 7615 7.225784 TGCAGTCATTGTGGTAAATGTTAAT 57.774 32.000 0.00 0.00 38.46 1.40
4973 7770 0.325933 TGTTGATCTGAGGCAGGGTG 59.674 55.000 0.00 0.00 31.51 4.61
4985 7782 2.567615 AGGCAGGGTGTTGACTTAGTAG 59.432 50.000 0.00 0.00 30.28 2.57
5088 7886 2.273370 CTGCCACTGCTGCAAATTAG 57.727 50.000 3.02 0.00 38.46 1.73
5289 8087 9.494271 ACTGCATTGAAGTATATAACACCATAG 57.506 33.333 0.00 0.00 0.00 2.23
5367 8165 8.737168 TCAATCTTAACTCAATACATCCTTGG 57.263 34.615 0.00 0.00 0.00 3.61
5474 8272 3.335579 AGGTTCGTCACTTTGCTATTCC 58.664 45.455 0.00 0.00 0.00 3.01
5524 8322 5.182001 GCAAGGAATTGATTATGATACCGCT 59.818 40.000 0.00 0.00 0.00 5.52
5756 8554 3.189287 CAGGTGTGTTTCTTATCCAGTGC 59.811 47.826 0.00 0.00 0.00 4.40
5840 8638 1.485066 AGAGTGAACTGTCGGGTGTTT 59.515 47.619 0.00 0.00 0.00 2.83
5915 8713 3.631686 TGATGGGATTAATGCTTTCCACG 59.368 43.478 6.93 0.00 0.00 4.94
5998 8796 9.840427 ATAATCGTTTTCATTTCGAAGTTGAAT 57.160 25.926 19.88 10.79 37.16 2.57
6002 8800 8.865001 TCGTTTTCATTTCGAAGTTGAATTTTT 58.135 25.926 19.88 0.00 34.32 1.94
6003 8801 9.132137 CGTTTTCATTTCGAAGTTGAATTTTTC 57.868 29.630 19.88 11.34 34.32 2.29
6015 8816 9.885934 GAAGTTGAATTTTTCTCCTACTTCTTC 57.114 33.333 0.00 0.00 38.01 2.87
6023 8824 3.912248 TCTCCTACTTCTTCGGCCTATT 58.088 45.455 0.00 0.00 0.00 1.73
6029 8833 7.215085 TCCTACTTCTTCGGCCTATTTTAATC 58.785 38.462 0.00 0.00 0.00 1.75
6233 9037 1.582389 AAGCCAGAGCCTCTTCATCT 58.418 50.000 0.00 0.00 41.25 2.90
6331 9135 5.689514 GCAGTGTAATGAGTGCTGATACTAG 59.310 44.000 0.00 0.00 38.95 2.57
6524 9328 3.072184 ACCCAATCTATCAGACATCAGCC 59.928 47.826 0.00 0.00 0.00 4.85
6590 9394 0.465460 AAGCCAACAACGCAAGGAGA 60.465 50.000 0.00 0.00 46.39 3.71
6598 9402 3.740115 ACAACGCAAGGAGATTTAGTGT 58.260 40.909 0.00 0.00 46.39 3.55
6756 9560 2.619931 TCTTTGGTGGACCTCTGATGA 58.380 47.619 0.00 0.00 36.82 2.92
6884 9688 1.434513 ATCACCTCCCCAAGTTGCCA 61.435 55.000 0.00 0.00 0.00 4.92
6982 9786 3.325293 TCTCAGTTCTTGCATCAGACC 57.675 47.619 0.00 0.00 0.00 3.85
6985 9789 4.070716 CTCAGTTCTTGCATCAGACCTTT 58.929 43.478 0.00 0.00 0.00 3.11
7091 9895 9.581289 TTTGTTTATCAAGGAAAAGGATGTCTA 57.419 29.630 0.00 0.00 37.35 2.59
7141 9945 1.151587 AGGGTGTTGGTGAGGGGAT 60.152 57.895 0.00 0.00 0.00 3.85
7142 9946 0.120377 AGGGTGTTGGTGAGGGGATA 59.880 55.000 0.00 0.00 0.00 2.59
7143 9947 0.996583 GGGTGTTGGTGAGGGGATAA 59.003 55.000 0.00 0.00 0.00 1.75
7144 9948 1.064685 GGGTGTTGGTGAGGGGATAAG 60.065 57.143 0.00 0.00 0.00 1.73
7145 9949 1.064685 GGTGTTGGTGAGGGGATAAGG 60.065 57.143 0.00 0.00 0.00 2.69
7146 9950 1.064685 GTGTTGGTGAGGGGATAAGGG 60.065 57.143 0.00 0.00 0.00 3.95
7147 9951 1.203505 TGTTGGTGAGGGGATAAGGGA 60.204 52.381 0.00 0.00 0.00 4.20
7254 10073 3.814504 TTTCCTTTCTGGCCATCTTCT 57.185 42.857 5.51 0.00 35.26 2.85
7255 10074 3.814504 TTCCTTTCTGGCCATCTTCTT 57.185 42.857 5.51 0.00 35.26 2.52
7256 10075 3.356529 TCCTTTCTGGCCATCTTCTTC 57.643 47.619 5.51 0.00 35.26 2.87
7346 10205 7.996644 TCTTGTTTAGATGGAACCTGTACTTTT 59.003 33.333 0.00 0.00 0.00 2.27
7347 10206 9.280174 CTTGTTTAGATGGAACCTGTACTTTTA 57.720 33.333 0.00 0.00 0.00 1.52
7348 10207 9.802039 TTGTTTAGATGGAACCTGTACTTTTAT 57.198 29.630 0.00 0.00 0.00 1.40
7349 10208 9.444600 TGTTTAGATGGAACCTGTACTTTTATC 57.555 33.333 0.00 0.00 0.00 1.75
7350 10209 9.668497 GTTTAGATGGAACCTGTACTTTTATCT 57.332 33.333 0.00 0.00 0.00 1.98
7351 10210 9.667107 TTTAGATGGAACCTGTACTTTTATCTG 57.333 33.333 0.00 0.00 0.00 2.90
7352 10211 7.496346 AGATGGAACCTGTACTTTTATCTGA 57.504 36.000 0.00 0.00 0.00 3.27
7353 10212 8.095452 AGATGGAACCTGTACTTTTATCTGAT 57.905 34.615 0.00 0.00 0.00 2.90
7354 10213 8.552296 AGATGGAACCTGTACTTTTATCTGATT 58.448 33.333 0.00 0.00 0.00 2.57
7355 10214 9.178758 GATGGAACCTGTACTTTTATCTGATTT 57.821 33.333 0.00 0.00 0.00 2.17
7356 10215 8.335532 TGGAACCTGTACTTTTATCTGATTTG 57.664 34.615 0.00 0.00 0.00 2.32
7357 10216 7.094377 TGGAACCTGTACTTTTATCTGATTTGC 60.094 37.037 0.00 0.00 0.00 3.68
7358 10217 7.121315 GGAACCTGTACTTTTATCTGATTTGCT 59.879 37.037 0.00 0.00 0.00 3.91
7359 10218 7.617041 ACCTGTACTTTTATCTGATTTGCTC 57.383 36.000 0.00 0.00 0.00 4.26
7360 10219 7.168219 ACCTGTACTTTTATCTGATTTGCTCA 58.832 34.615 0.00 0.00 0.00 4.26
7361 10220 7.831193 ACCTGTACTTTTATCTGATTTGCTCAT 59.169 33.333 0.00 0.00 32.10 2.90
7416 10275 1.682087 CCACCTTGGCTAGCCTAAACC 60.682 57.143 33.07 7.40 36.94 3.27
7451 10310 5.621904 ATTGGATTGGGGCTAATTCCTAT 57.378 39.130 0.00 0.00 0.00 2.57
7452 10311 5.417170 TTGGATTGGGGCTAATTCCTATT 57.583 39.130 0.00 0.00 0.00 1.73
7453 10312 5.417170 TGGATTGGGGCTAATTCCTATTT 57.583 39.130 0.00 0.00 0.00 1.40
7454 10313 5.393866 TGGATTGGGGCTAATTCCTATTTC 58.606 41.667 0.00 0.00 0.00 2.17
7455 10314 4.772624 GGATTGGGGCTAATTCCTATTTCC 59.227 45.833 0.00 0.00 0.00 3.13
7456 10315 5.459683 GGATTGGGGCTAATTCCTATTTCCT 60.460 44.000 0.00 0.00 0.00 3.36
7457 10316 4.724279 TGGGGCTAATTCCTATTTCCTC 57.276 45.455 0.00 0.00 0.00 3.71
7458 10317 4.315993 TGGGGCTAATTCCTATTTCCTCT 58.684 43.478 0.00 0.00 0.00 3.69
7460 10319 4.104897 GGGGCTAATTCCTATTTCCTCTGT 59.895 45.833 0.00 0.00 0.00 3.41
7461 10320 5.309806 GGGGCTAATTCCTATTTCCTCTGTA 59.690 44.000 0.00 0.00 0.00 2.74
7462 10321 6.468543 GGGCTAATTCCTATTTCCTCTGTAG 58.531 44.000 0.00 0.00 0.00 2.74
7463 10322 6.043358 GGGCTAATTCCTATTTCCTCTGTAGT 59.957 42.308 0.00 0.00 0.00 2.73
7464 10323 6.931840 GGCTAATTCCTATTTCCTCTGTAGTG 59.068 42.308 0.00 0.00 0.00 2.74
7465 10324 7.419172 GGCTAATTCCTATTTCCTCTGTAGTGT 60.419 40.741 0.00 0.00 0.00 3.55
7466 10325 7.654116 GCTAATTCCTATTTCCTCTGTAGTGTC 59.346 40.741 0.00 0.00 0.00 3.67
7467 10326 7.496346 AATTCCTATTTCCTCTGTAGTGTCA 57.504 36.000 0.00 0.00 0.00 3.58
7468 10327 6.928348 TTCCTATTTCCTCTGTAGTGTCAA 57.072 37.500 0.00 0.00 0.00 3.18
7469 10328 6.928348 TCCTATTTCCTCTGTAGTGTCAAA 57.072 37.500 0.00 0.00 0.00 2.69
7470 10329 7.311092 TCCTATTTCCTCTGTAGTGTCAAAA 57.689 36.000 0.00 0.00 0.00 2.44
7471 10330 7.741785 TCCTATTTCCTCTGTAGTGTCAAAAA 58.258 34.615 0.00 0.00 0.00 1.94
7472 10331 7.660208 TCCTATTTCCTCTGTAGTGTCAAAAAC 59.340 37.037 0.00 0.00 0.00 2.43
7473 10332 5.728351 TTTCCTCTGTAGTGTCAAAAACG 57.272 39.130 0.00 0.00 0.00 3.60
7474 10333 4.395959 TCCTCTGTAGTGTCAAAAACGT 57.604 40.909 0.00 0.00 0.00 3.99
7476 10335 4.807304 TCCTCTGTAGTGTCAAAAACGTTC 59.193 41.667 0.00 0.00 0.00 3.95
7477 10336 4.809426 CCTCTGTAGTGTCAAAAACGTTCT 59.191 41.667 0.00 0.00 0.00 3.01
7478 10337 5.293569 CCTCTGTAGTGTCAAAAACGTTCTT 59.706 40.000 0.00 0.00 0.00 2.52
7479 10338 6.477688 CCTCTGTAGTGTCAAAAACGTTCTTA 59.522 38.462 0.00 0.00 0.00 2.10
7480 10339 7.170998 CCTCTGTAGTGTCAAAAACGTTCTTAT 59.829 37.037 0.00 0.00 0.00 1.73
7481 10340 9.188588 CTCTGTAGTGTCAAAAACGTTCTTATA 57.811 33.333 0.00 0.00 0.00 0.98
7482 10341 9.701098 TCTGTAGTGTCAAAAACGTTCTTATAT 57.299 29.630 0.00 0.00 0.00 0.86
7488 10347 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
7489 10348 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
7491 10350 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
7493 10352 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
7495 10354 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
7496 10355 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
7497 10356 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
7498 10357 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
7554 10572 3.364964 CGCTAAAGTTGCACCTTGGTTAG 60.365 47.826 0.00 0.00 0.00 2.34
7567 10585 6.617879 CACCTTGGTTAGCCTAAAATTGTAC 58.382 40.000 0.00 0.00 35.27 2.90
7646 10664 4.547886 AATGAGATGGGAATGGTTGGAT 57.452 40.909 0.00 0.00 0.00 3.41
7718 10736 2.143925 GCAACTTACAGTGACACTCCC 58.856 52.381 4.74 0.00 0.00 4.30
7793 10826 8.368857 CACTCTCAGAATATATCATAAAACGCG 58.631 37.037 3.53 3.53 0.00 6.01
7794 10827 8.082852 ACTCTCAGAATATATCATAAAACGCGT 58.917 33.333 5.58 5.58 0.00 6.01
7795 10828 8.812147 TCTCAGAATATATCATAAAACGCGTT 57.188 30.769 20.79 20.79 0.00 4.84
7796 10829 9.256477 TCTCAGAATATATCATAAAACGCGTTT 57.744 29.630 30.36 30.36 0.00 3.60
7797 10830 9.864034 CTCAGAATATATCATAAAACGCGTTTT 57.136 29.630 41.13 41.13 44.16 2.43
7798 10831 9.644993 TCAGAATATATCATAAAACGCGTTTTG 57.355 29.630 43.89 34.15 42.18 2.44
7799 10832 9.644993 CAGAATATATCATAAAACGCGTTTTGA 57.355 29.630 43.89 37.09 42.18 2.69
7800 10833 9.646336 AGAATATATCATAAAACGCGTTTTGAC 57.354 29.630 43.89 26.87 42.18 3.18
7801 10834 9.646336 GAATATATCATAAAACGCGTTTTGACT 57.354 29.630 43.89 30.23 42.18 3.41
7802 10835 9.646336 AATATATCATAAAACGCGTTTTGACTC 57.354 29.630 43.89 0.00 42.18 3.36
7803 10836 3.790058 TCATAAAACGCGTTTTGACTCG 58.210 40.909 43.89 30.34 42.18 4.18
7804 10837 3.245754 TCATAAAACGCGTTTTGACTCGT 59.754 39.130 43.89 27.46 42.18 4.18
7805 10838 2.530832 AAAACGCGTTTTGACTCGTT 57.469 40.000 40.16 20.22 45.51 3.85
7806 10839 3.654952 AAAACGCGTTTTGACTCGTTA 57.345 38.095 40.16 0.00 43.23 3.18
7807 10840 3.654952 AAACGCGTTTTGACTCGTTAA 57.345 38.095 30.36 0.00 43.23 2.01
7808 10841 2.916735 ACGCGTTTTGACTCGTTAAG 57.083 45.000 5.58 0.00 0.00 1.85
7809 10842 2.462889 ACGCGTTTTGACTCGTTAAGA 58.537 42.857 5.58 0.00 0.00 2.10
7810 10843 2.217167 ACGCGTTTTGACTCGTTAAGAC 59.783 45.455 5.58 0.00 0.00 3.01
7811 10844 2.216940 CGCGTTTTGACTCGTTAAGACA 59.783 45.455 0.00 0.00 0.00 3.41
7812 10845 3.301963 CGCGTTTTGACTCGTTAAGACAA 60.302 43.478 0.00 0.00 37.78 3.18
7813 10846 4.607557 CGCGTTTTGACTCGTTAAGACAAT 60.608 41.667 0.00 0.00 38.99 2.71
7814 10847 4.607235 GCGTTTTGACTCGTTAAGACAATG 59.393 41.667 0.00 0.00 38.99 2.82
7815 10848 5.734311 CGTTTTGACTCGTTAAGACAATGT 58.266 37.500 0.00 0.00 38.99 2.71
7816 10849 6.189567 CGTTTTGACTCGTTAAGACAATGTT 58.810 36.000 0.00 0.00 38.99 2.71
7817 10850 6.685403 CGTTTTGACTCGTTAAGACAATGTTT 59.315 34.615 0.00 0.00 38.99 2.83
7818 10851 7.217447 CGTTTTGACTCGTTAAGACAATGTTTT 59.783 33.333 0.00 0.00 38.99 2.43
7819 10852 9.493206 GTTTTGACTCGTTAAGACAATGTTTTA 57.507 29.630 0.00 0.00 38.99 1.52
7821 10854 9.493206 TTTGACTCGTTAAGACAATGTTTTAAC 57.507 29.630 22.15 22.15 38.99 2.01
7822 10855 7.632721 TGACTCGTTAAGACAATGTTTTAACC 58.367 34.615 24.44 15.38 38.81 2.85
7823 10856 7.280428 TGACTCGTTAAGACAATGTTTTAACCA 59.720 33.333 24.44 16.12 38.81 3.67
7824 10857 7.987649 ACTCGTTAAGACAATGTTTTAACCAA 58.012 30.769 24.44 16.06 38.81 3.67
7825 10858 7.911727 ACTCGTTAAGACAATGTTTTAACCAAC 59.088 33.333 24.44 10.44 38.81 3.77
7826 10859 7.759465 TCGTTAAGACAATGTTTTAACCAACA 58.241 30.769 24.44 10.49 38.81 3.33
7827 10860 8.242053 TCGTTAAGACAATGTTTTAACCAACAA 58.758 29.630 24.44 9.79 38.81 2.83
7828 10861 9.026074 CGTTAAGACAATGTTTTAACCAACAAT 57.974 29.630 24.44 0.00 38.81 2.71
7849 10882 8.181904 ACAATTAGTTTGTCATTTCATGTCCT 57.818 30.769 0.00 0.00 45.55 3.85
7850 10883 8.641541 ACAATTAGTTTGTCATTTCATGTCCTT 58.358 29.630 0.00 0.00 45.55 3.36
7851 10884 8.918658 CAATTAGTTTGTCATTTCATGTCCTTG 58.081 33.333 0.00 0.00 0.00 3.61
7852 10885 7.581213 TTAGTTTGTCATTTCATGTCCTTGT 57.419 32.000 0.00 0.00 0.00 3.16
7853 10886 5.835257 AGTTTGTCATTTCATGTCCTTGTG 58.165 37.500 0.00 0.00 0.00 3.33
7854 10887 5.360714 AGTTTGTCATTTCATGTCCTTGTGT 59.639 36.000 0.00 0.00 0.00 3.72
7855 10888 4.834357 TGTCATTTCATGTCCTTGTGTG 57.166 40.909 0.00 0.00 0.00 3.82
7856 10889 4.459330 TGTCATTTCATGTCCTTGTGTGA 58.541 39.130 0.00 0.00 0.00 3.58
7857 10890 5.072055 TGTCATTTCATGTCCTTGTGTGAT 58.928 37.500 0.00 0.00 0.00 3.06
7858 10891 6.237154 TGTCATTTCATGTCCTTGTGTGATA 58.763 36.000 0.00 0.00 0.00 2.15
7859 10892 6.372381 TGTCATTTCATGTCCTTGTGTGATAG 59.628 38.462 0.00 0.00 0.00 2.08
7860 10893 6.372659 GTCATTTCATGTCCTTGTGTGATAGT 59.627 38.462 0.00 0.00 0.00 2.12
7861 10894 7.549134 GTCATTTCATGTCCTTGTGTGATAGTA 59.451 37.037 0.00 0.00 0.00 1.82
7862 10895 8.267183 TCATTTCATGTCCTTGTGTGATAGTAT 58.733 33.333 0.00 0.00 0.00 2.12
7863 10896 7.848223 TTTCATGTCCTTGTGTGATAGTATG 57.152 36.000 0.00 0.00 0.00 2.39
7864 10897 6.790232 TCATGTCCTTGTGTGATAGTATGA 57.210 37.500 0.00 0.00 0.00 2.15
7865 10898 7.365497 TCATGTCCTTGTGTGATAGTATGAT 57.635 36.000 0.00 0.00 0.00 2.45
7866 10899 8.477419 TCATGTCCTTGTGTGATAGTATGATA 57.523 34.615 0.00 0.00 0.00 2.15
7867 10900 9.093458 TCATGTCCTTGTGTGATAGTATGATAT 57.907 33.333 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.941963 AGGTAGGGTCATAGGCCTGA 59.058 55.000 17.99 2.17 0.00 3.86
7 8 1.807814 AAGGTAGGGTCATAGGCCTG 58.192 55.000 17.99 0.00 0.00 4.85
8 9 2.158143 CCTAAGGTAGGGTCATAGGCCT 60.158 54.545 11.78 11.78 42.42 5.19
9 10 2.258109 CCTAAGGTAGGGTCATAGGCC 58.742 57.143 0.00 0.00 42.42 5.19
20 21 7.526142 TGATGAAGCTATGTACCTAAGGTAG 57.474 40.000 0.00 0.00 39.02 3.18
21 22 7.526142 CTGATGAAGCTATGTACCTAAGGTA 57.474 40.000 0.00 0.00 37.09 3.08
22 23 6.412362 CTGATGAAGCTATGTACCTAAGGT 57.588 41.667 0.00 0.00 40.16 3.50
45 46 2.859992 CTTGACCCCAAGCTACAGC 58.140 57.895 0.00 0.00 42.72 4.40
82 83 1.009829 GTCTGCGTCCATCACATTCC 58.990 55.000 0.00 0.00 0.00 3.01
98 99 2.355115 GATTTGGCCCCCGTGTCT 59.645 61.111 0.00 0.00 0.00 3.41
111 112 3.429410 GCCTTCGCTATGCTTTTGGATTT 60.429 43.478 0.00 0.00 0.00 2.17
119 120 0.536006 GGATGGCCTTCGCTATGCTT 60.536 55.000 12.20 0.00 40.52 3.91
122 123 0.179020 TTGGGATGGCCTTCGCTATG 60.179 55.000 28.56 0.00 36.13 2.23
124 125 0.980754 TCTTGGGATGGCCTTCGCTA 60.981 55.000 28.56 22.49 34.44 4.26
135 136 1.694696 GCCTTCGGTATCTCTTGGGAT 59.305 52.381 0.00 0.00 0.00 3.85
136 137 1.120530 GCCTTCGGTATCTCTTGGGA 58.879 55.000 0.00 0.00 0.00 4.37
181 185 2.437281 CACTTATCCACCCAGCTCTCAT 59.563 50.000 0.00 0.00 0.00 2.90
184 188 2.114616 CTCACTTATCCACCCAGCTCT 58.885 52.381 0.00 0.00 0.00 4.09
207 211 2.821810 CACACACACACACCCGCA 60.822 61.111 0.00 0.00 0.00 5.69
211 215 1.095228 CCCTCACACACACACACACC 61.095 60.000 0.00 0.00 0.00 4.16
213 217 1.451207 GCCCTCACACACACACACA 60.451 57.895 0.00 0.00 0.00 3.72
214 218 0.819259 ATGCCCTCACACACACACAC 60.819 55.000 0.00 0.00 0.00 3.82
215 219 0.534877 GATGCCCTCACACACACACA 60.535 55.000 0.00 0.00 0.00 3.72
216 220 1.568612 CGATGCCCTCACACACACAC 61.569 60.000 0.00 0.00 0.00 3.82
217 221 1.301637 CGATGCCCTCACACACACA 60.302 57.895 0.00 0.00 0.00 3.72
226 230 0.392336 AGCAGATTCTCGATGCCCTC 59.608 55.000 4.38 0.00 40.89 4.30
252 256 1.682740 GTAGGGTTCGAGAGAGGGAG 58.317 60.000 0.00 0.00 43.69 4.30
253 257 0.258194 GGTAGGGTTCGAGAGAGGGA 59.742 60.000 0.00 0.00 43.69 4.20
254 258 0.259356 AGGTAGGGTTCGAGAGAGGG 59.741 60.000 0.00 0.00 43.69 4.30
255 259 1.213430 AGAGGTAGGGTTCGAGAGAGG 59.787 57.143 0.00 0.00 43.69 3.69
256 260 2.567985 GAGAGGTAGGGTTCGAGAGAG 58.432 57.143 0.00 0.00 43.69 3.20
257 261 1.212441 GGAGAGGTAGGGTTCGAGAGA 59.788 57.143 0.00 0.00 39.20 3.10
258 262 1.213430 AGGAGAGGTAGGGTTCGAGAG 59.787 57.143 0.00 0.00 0.00 3.20
259 263 1.296984 AGGAGAGGTAGGGTTCGAGA 58.703 55.000 0.00 0.00 0.00 4.04
260 264 2.574450 GTAGGAGAGGTAGGGTTCGAG 58.426 57.143 0.00 0.00 0.00 4.04
261 265 1.213926 GGTAGGAGAGGTAGGGTTCGA 59.786 57.143 0.00 0.00 0.00 3.71
262 266 1.689984 GGTAGGAGAGGTAGGGTTCG 58.310 60.000 0.00 0.00 0.00 3.95
263 267 1.412793 GGGGTAGGAGAGGTAGGGTTC 60.413 61.905 0.00 0.00 0.00 3.62
264 268 0.641048 GGGGTAGGAGAGGTAGGGTT 59.359 60.000 0.00 0.00 0.00 4.11
265 269 1.302667 GGGGGTAGGAGAGGTAGGGT 61.303 65.000 0.00 0.00 0.00 4.34
284 288 1.401552 CATGGCAATACACGGGAGTTG 59.598 52.381 0.00 0.00 44.67 3.16
292 296 3.206150 ACTCGAATCCATGGCAATACAC 58.794 45.455 6.96 0.00 0.00 2.90
297 301 5.924356 TCTATTAACTCGAATCCATGGCAA 58.076 37.500 6.96 0.00 0.00 4.52
303 307 9.221933 GTCTCTATCTCTATTAACTCGAATCCA 57.778 37.037 0.00 0.00 0.00 3.41
305 309 8.385111 CGGTCTCTATCTCTATTAACTCGAATC 58.615 40.741 0.00 0.00 0.00 2.52
363 367 5.057149 GCGTAAAATGATCACTATCCCAGT 58.943 41.667 0.00 0.00 38.32 4.00
373 378 8.152309 TCATCACAATATGCGTAAAATGATCA 57.848 30.769 0.00 0.00 0.00 2.92
374 379 8.498358 TCTCATCACAATATGCGTAAAATGATC 58.502 33.333 6.32 0.00 0.00 2.92
410 415 7.011389 CGATGGTAGCTTATCTCATCACAAAAA 59.989 37.037 0.00 0.00 35.32 1.94
411 416 6.479990 CGATGGTAGCTTATCTCATCACAAAA 59.520 38.462 0.00 0.00 35.32 2.44
412 417 5.985530 CGATGGTAGCTTATCTCATCACAAA 59.014 40.000 0.00 0.00 35.32 2.83
413 418 5.532557 CGATGGTAGCTTATCTCATCACAA 58.467 41.667 0.00 0.00 35.32 3.33
414 419 4.559502 GCGATGGTAGCTTATCTCATCACA 60.560 45.833 0.00 0.00 35.32 3.58
415 420 3.923461 GCGATGGTAGCTTATCTCATCAC 59.077 47.826 0.00 0.00 35.32 3.06
416 421 3.829026 AGCGATGGTAGCTTATCTCATCA 59.171 43.478 0.00 0.00 43.24 3.07
417 422 4.420168 GAGCGATGGTAGCTTATCTCATC 58.580 47.826 0.00 0.00 46.13 2.92
418 423 3.119673 CGAGCGATGGTAGCTTATCTCAT 60.120 47.826 0.00 0.00 46.13 2.90
419 424 2.226674 CGAGCGATGGTAGCTTATCTCA 59.773 50.000 0.00 0.00 46.13 3.27
420 425 2.226912 ACGAGCGATGGTAGCTTATCTC 59.773 50.000 0.00 0.00 46.13 2.75
421 426 2.226912 GACGAGCGATGGTAGCTTATCT 59.773 50.000 0.00 0.00 46.13 1.98
422 427 2.586900 GACGAGCGATGGTAGCTTATC 58.413 52.381 0.00 0.00 46.13 1.75
423 428 1.069159 CGACGAGCGATGGTAGCTTAT 60.069 52.381 0.00 0.00 46.13 1.73
424 429 0.306840 CGACGAGCGATGGTAGCTTA 59.693 55.000 0.00 0.00 46.13 3.09
425 430 1.064296 CGACGAGCGATGGTAGCTT 59.936 57.895 0.00 0.00 46.13 3.74
445 450 3.602390 AACGAAGAAACAATGACACGG 57.398 42.857 0.00 0.00 0.00 4.94
459 464 2.861462 TTTGCTGGACCAAAACGAAG 57.139 45.000 0.00 0.00 32.20 3.79
507 2349 4.157120 GTACCATCGGCCAGGCGT 62.157 66.667 13.55 0.00 0.00 5.68
520 2362 3.299524 TTACCCTGCGCACCGTACC 62.300 63.158 5.66 0.00 0.00 3.34
631 2473 9.238368 TGTTTCCTTCCGAACTTAATTTGATAT 57.762 29.630 0.00 0.00 0.00 1.63
632 2474 8.624367 TGTTTCCTTCCGAACTTAATTTGATA 57.376 30.769 0.00 0.00 0.00 2.15
633 2475 7.519032 TGTTTCCTTCCGAACTTAATTTGAT 57.481 32.000 0.00 0.00 0.00 2.57
634 2476 6.945938 TGTTTCCTTCCGAACTTAATTTGA 57.054 33.333 0.00 0.00 0.00 2.69
1076 3470 3.832171 GCGCGTTCGAGCACAGAG 61.832 66.667 15.02 0.00 38.10 3.35
1197 3591 4.531912 CAGCATCGCGCAGGCAAG 62.532 66.667 8.75 1.64 46.13 4.01
1225 3619 4.595762 ACTTCTCGTGCTAACCTAAACA 57.404 40.909 0.00 0.00 0.00 2.83
1239 3633 3.240861 GCGCATCAGTAGTTTACTTCTCG 59.759 47.826 0.30 0.00 36.76 4.04
1263 3657 3.120546 ACGCATCAGATCAAAACGAACAG 60.121 43.478 0.00 0.00 0.00 3.16
1264 3658 2.805671 ACGCATCAGATCAAAACGAACA 59.194 40.909 0.00 0.00 0.00 3.18
1290 3684 5.897377 ACTAGGATTGAACCGAAAAATGG 57.103 39.130 0.00 0.00 34.73 3.16
1320 3715 5.399013 TCACATCAGACACACATAACTACG 58.601 41.667 0.00 0.00 0.00 3.51
1418 3825 0.804989 GTCGGAACAGCAGAAATGGG 59.195 55.000 0.00 0.00 0.00 4.00
1470 3880 2.441532 GCAGCATGGCATCAGGGT 60.442 61.111 0.00 0.00 35.69 4.34
1473 3883 1.093496 TTCGAGCAGCATGGCATCAG 61.093 55.000 0.00 0.00 35.86 2.90
1484 3895 1.059369 CCGCGTGAAATTCGAGCAG 59.941 57.895 4.92 5.71 0.00 4.24
1486 3897 1.225745 CACCGCGTGAAATTCGAGC 60.226 57.895 4.92 3.06 35.23 5.03
1488 3899 1.225376 AAGCACCGCGTGAAATTCGA 61.225 50.000 4.92 0.00 35.23 3.71
1498 3909 2.014093 GATCAGAACGAAGCACCGCG 62.014 60.000 0.00 0.00 0.00 6.46
1531 3965 1.914634 AGAGCAGAAACATACTCGCG 58.085 50.000 0.00 0.00 34.31 5.87
1648 4089 1.063266 ACTCCAAAAGTCCAAGGCCAA 60.063 47.619 5.01 0.00 30.02 4.52
1659 4100 2.602217 CGCGAAACTCCAACTCCAAAAG 60.602 50.000 0.00 0.00 0.00 2.27
1667 4108 0.660300 CAAAGCCGCGAAACTCCAAC 60.660 55.000 8.23 0.00 0.00 3.77
1779 4220 0.602638 TCCGCATTCGAGCACAGTTT 60.603 50.000 0.00 0.00 38.10 2.66
1963 4421 9.231297 CACTTTAAAATGATACTTCCCTCAGAA 57.769 33.333 0.00 0.00 0.00 3.02
1995 4458 8.688151 AGTTGACTACTAAGCTCTTATTACAGG 58.312 37.037 0.00 0.00 34.56 4.00
1996 4459 9.509855 CAGTTGACTACTAAGCTCTTATTACAG 57.490 37.037 0.00 0.00 34.56 2.74
2040 4503 7.699391 TCAGTGAAAATATCTAACCGTTAGTCG 59.301 37.037 16.23 0.00 39.52 4.18
2048 4511 8.131731 GCCAAGAATCAGTGAAAATATCTAACC 58.868 37.037 0.00 0.00 0.00 2.85
2069 4533 4.818546 CCATAACTCAGGTCATAAGCCAAG 59.181 45.833 0.00 0.00 0.00 3.61
2171 4636 3.181485 GGTCTGTACATGTACCAGAGAGC 60.181 52.174 28.67 26.87 35.26 4.09
2257 4722 8.367156 TGCCTATTTGCTTGATCTTTTAAACTT 58.633 29.630 0.00 0.00 0.00 2.66
2312 4777 6.260493 GCTCAGATATTGCAGATCTCTTGTTT 59.740 38.462 9.61 0.00 31.05 2.83
2313 4778 5.759273 GCTCAGATATTGCAGATCTCTTGTT 59.241 40.000 9.61 0.00 31.05 2.83
2604 5071 8.153550 AGCCTTAATCTGACTAATGAGTAATGG 58.846 37.037 0.00 0.00 35.45 3.16
2642 5109 0.467804 GGAGGAAGCTTAGGCCAGAG 59.532 60.000 5.01 2.73 39.73 3.35
2643 5110 0.043334 AGGAGGAAGCTTAGGCCAGA 59.957 55.000 5.01 0.00 39.73 3.86
2722 5189 4.039032 GTCACAACCAACCAAACATAACG 58.961 43.478 0.00 0.00 0.00 3.18
2759 5226 2.979814 AACCATCGACCGAATGATCA 57.020 45.000 0.00 0.00 0.00 2.92
2785 5252 9.883142 ATTTATAGAAGAAGAAAGAGTGTCAGG 57.117 33.333 0.00 0.00 0.00 3.86
2816 5284 3.350833 ACCATGAAGGAGAACTGCATTC 58.649 45.455 0.00 0.00 43.27 2.67
2817 5285 3.446442 ACCATGAAGGAGAACTGCATT 57.554 42.857 0.00 0.00 43.27 3.56
2952 5422 6.646653 ACACCGATTGCAATATACTGATACAG 59.353 38.462 12.97 0.00 37.52 2.74
3095 5565 9.029368 AGCAGTACATCTAGCATATAGAATCAA 57.971 33.333 0.00 0.00 0.00 2.57
3579 6338 6.877611 TGGACTCAAGAAACAGGTAAATTC 57.122 37.500 0.00 0.00 0.00 2.17
3718 6477 6.543465 CAGAGGGAGTAAACATTATGATGCAA 59.457 38.462 0.00 0.00 36.72 4.08
3723 6482 6.214615 TGGAACAGAGGGAGTAAACATTATGA 59.785 38.462 0.00 0.00 0.00 2.15
3742 6501 2.294791 CCACGGCACTTATTTTGGAACA 59.705 45.455 0.00 0.00 0.00 3.18
3779 6538 7.883391 TCCAAAATAAGTGTTGTGGTCTTTA 57.117 32.000 0.00 0.00 0.00 1.85
3782 6541 6.239289 CCATTCCAAAATAAGTGTTGTGGTCT 60.239 38.462 0.00 0.00 0.00 3.85
3783 6542 5.925969 CCATTCCAAAATAAGTGTTGTGGTC 59.074 40.000 0.00 0.00 0.00 4.02
3789 6556 5.650283 TCCCTCCATTCCAAAATAAGTGTT 58.350 37.500 0.00 0.00 0.00 3.32
3805 6572 1.768870 GCCTAAATACTGCTCCCTCCA 59.231 52.381 0.00 0.00 0.00 3.86
4103 6876 1.202806 TGTCCTTTTGCCTCACTCCTG 60.203 52.381 0.00 0.00 0.00 3.86
4253 7026 9.826574 TTGCGTAAACATAAAGGACTCTATTAT 57.173 29.630 0.00 0.00 0.00 1.28
4438 7235 7.518188 AGAAAGGGTAGAAAGACTGAATGAAA 58.482 34.615 0.00 0.00 0.00 2.69
4503 7300 1.614903 CAGCCACTGCATCAAAAAGGA 59.385 47.619 0.00 0.00 41.13 3.36
4758 7555 1.918957 AGACCATAGCCCAGCTTTTCT 59.081 47.619 0.00 0.00 40.44 2.52
4818 7615 7.209475 CCTCAAAACAAGATAAGAAAAAGGCA 58.791 34.615 0.00 0.00 0.00 4.75
4884 7681 5.481824 AGACCGCTCAATGAAGATGGATATA 59.518 40.000 0.00 0.00 0.00 0.86
4901 7698 0.107831 TGCACCTTACAAAGACCGCT 59.892 50.000 0.00 0.00 0.00 5.52
4973 7770 6.074463 CGTTCAAGTGTTCCTACTAAGTCAAC 60.074 42.308 0.00 0.00 0.00 3.18
5088 7886 4.795268 GCAAAAAGGCCAAGTTACTACTC 58.205 43.478 5.01 0.00 31.99 2.59
5289 8087 5.049336 TGCTTGACTATCGTATGACTAGCTC 60.049 44.000 0.00 0.00 0.00 4.09
5301 8099 6.730175 ACTCTAATACAGTGCTTGACTATCG 58.270 40.000 0.00 0.00 31.73 2.92
5330 8128 5.363939 AGTTAAGATTGAGCTAGCCATGTC 58.636 41.667 12.13 2.58 0.00 3.06
5367 8165 0.107945 CTGTACTCAGGGCCTGAAGC 60.108 60.000 34.25 25.54 40.18 3.86
5520 8318 4.806247 TGAAAAATGGTTGTAACAAAGCGG 59.194 37.500 0.00 0.00 0.00 5.52
5524 8322 5.119694 GCCCTGAAAAATGGTTGTAACAAA 58.880 37.500 0.00 0.00 0.00 2.83
5718 8516 0.109597 CCTGGTCAACAAAGATGCGC 60.110 55.000 0.00 0.00 0.00 6.09
5775 8573 4.091509 GCAAACTACAGACAGTTGATACGG 59.908 45.833 0.00 0.00 38.74 4.02
5840 8638 6.048732 TGTGCTTCCAGTGATAGAAACATA 57.951 37.500 0.00 0.00 0.00 2.29
5998 8796 3.326880 AGGCCGAAGAAGTAGGAGAAAAA 59.673 43.478 0.00 0.00 0.00 1.94
6002 8800 3.596940 ATAGGCCGAAGAAGTAGGAGA 57.403 47.619 0.00 0.00 0.00 3.71
6003 8801 4.674281 AAATAGGCCGAAGAAGTAGGAG 57.326 45.455 0.00 0.00 0.00 3.69
6004 8802 6.549433 TTAAAATAGGCCGAAGAAGTAGGA 57.451 37.500 0.00 0.00 0.00 2.94
6005 8803 6.145696 CGATTAAAATAGGCCGAAGAAGTAGG 59.854 42.308 0.00 0.00 0.00 3.18
6015 8816 5.924254 TGATACAGACGATTAAAATAGGCCG 59.076 40.000 0.00 0.00 0.00 6.13
6023 8824 6.756542 CCTGTGATGTGATACAGACGATTAAA 59.243 38.462 5.99 0.00 45.46 1.52
6029 8833 3.439293 GTCCTGTGATGTGATACAGACG 58.561 50.000 5.99 0.00 45.46 4.18
6233 9037 2.677836 GCTATTGATCGGTTTCAGCACA 59.322 45.455 0.00 0.00 0.00 4.57
6331 9135 1.626654 CCGAGTGTCGATGTGGTTGC 61.627 60.000 0.00 0.00 43.74 4.17
6598 9402 2.362397 GGAGATCTATCTGTGTTCGGCA 59.638 50.000 0.00 0.00 37.25 5.69
6756 9560 1.542030 ACTTCTCGTCGCAGAATCTGT 59.458 47.619 12.29 1.88 39.69 3.41
6884 9688 7.148239 GGATACTCCGAAAACAGTTCATTTCAT 60.148 37.037 0.00 0.00 35.72 2.57
6914 9718 0.514691 GCAGAGAAACAGGTGCTTCG 59.485 55.000 0.00 0.00 32.97 3.79
6982 9786 8.299570 AGCTGACACAAAATCATAACCTAAAAG 58.700 33.333 0.00 0.00 0.00 2.27
6985 9789 7.552687 CCTAGCTGACACAAAATCATAACCTAA 59.447 37.037 0.00 0.00 0.00 2.69
7083 9887 4.125703 CTCATCCAACAGCTTAGACATCC 58.874 47.826 0.00 0.00 0.00 3.51
7091 9895 1.005215 CCCCTTCTCATCCAACAGCTT 59.995 52.381 0.00 0.00 0.00 3.74
7141 9945 5.071250 ACACGCATAACATCCTTATCCCTTA 59.929 40.000 0.00 0.00 0.00 2.69
7142 9946 4.141482 ACACGCATAACATCCTTATCCCTT 60.141 41.667 0.00 0.00 0.00 3.95
7143 9947 3.391296 ACACGCATAACATCCTTATCCCT 59.609 43.478 0.00 0.00 0.00 4.20
7144 9948 3.740115 ACACGCATAACATCCTTATCCC 58.260 45.455 0.00 0.00 0.00 3.85
7145 9949 6.220930 TCTAACACGCATAACATCCTTATCC 58.779 40.000 0.00 0.00 0.00 2.59
7146 9950 7.891183 ATCTAACACGCATAACATCCTTATC 57.109 36.000 0.00 0.00 0.00 1.75
7147 9951 8.364894 TGTATCTAACACGCATAACATCCTTAT 58.635 33.333 0.00 0.00 31.43 1.73
7254 10073 9.179909 TGCTAAAAAGGTTAATAATCCATCGAA 57.820 29.630 0.00 0.00 0.00 3.71
7255 10074 8.740123 TGCTAAAAAGGTTAATAATCCATCGA 57.260 30.769 0.00 0.00 0.00 3.59
7256 10075 8.836413 TCTGCTAAAAAGGTTAATAATCCATCG 58.164 33.333 0.00 0.00 0.00 3.84
7278 10099 7.067094 TGAAATTTCAGGCTTAGCAAATCTGC 61.067 38.462 16.91 0.00 39.59 4.26
7346 10205 6.528321 CCACTTAGGATGAGCAAATCAGATA 58.472 40.000 1.63 0.00 42.53 1.98
7347 10206 5.374921 CCACTTAGGATGAGCAAATCAGAT 58.625 41.667 1.63 0.00 42.53 2.90
7348 10207 4.774124 CCACTTAGGATGAGCAAATCAGA 58.226 43.478 1.63 0.00 42.53 3.27
7349 10208 3.314635 GCCACTTAGGATGAGCAAATCAG 59.685 47.826 1.63 0.00 41.22 2.90
7350 10209 3.054139 AGCCACTTAGGATGAGCAAATCA 60.054 43.478 1.63 0.00 41.22 2.57
7351 10210 3.549794 AGCCACTTAGGATGAGCAAATC 58.450 45.455 0.00 0.00 41.22 2.17
7352 10211 3.659183 AGCCACTTAGGATGAGCAAAT 57.341 42.857 0.00 0.00 41.22 2.32
7353 10212 3.084039 CAAGCCACTTAGGATGAGCAAA 58.916 45.455 0.00 0.00 41.22 3.68
7354 10213 2.305635 TCAAGCCACTTAGGATGAGCAA 59.694 45.455 0.00 0.00 41.22 3.91
7355 10214 1.908619 TCAAGCCACTTAGGATGAGCA 59.091 47.619 0.00 0.00 41.22 4.26
7356 10215 2.698855 TCAAGCCACTTAGGATGAGC 57.301 50.000 0.00 0.00 41.22 4.26
7357 10216 4.521146 ACATTCAAGCCACTTAGGATGAG 58.479 43.478 0.00 0.00 41.22 2.90
7358 10217 4.574674 ACATTCAAGCCACTTAGGATGA 57.425 40.909 0.00 0.00 41.22 2.92
7359 10218 5.649782 AAACATTCAAGCCACTTAGGATG 57.350 39.130 0.00 0.00 41.22 3.51
7360 10219 6.485171 ACTAAACATTCAAGCCACTTAGGAT 58.515 36.000 0.00 0.00 41.22 3.24
7361 10220 5.876357 ACTAAACATTCAAGCCACTTAGGA 58.124 37.500 0.00 0.00 41.22 2.94
7416 10275 6.282930 CCCCAATCCAATAAAATAAGCACAG 58.717 40.000 0.00 0.00 0.00 3.66
7451 10310 5.180271 ACGTTTTTGACACTACAGAGGAAA 58.820 37.500 0.00 0.00 0.00 3.13
7452 10311 4.761975 ACGTTTTTGACACTACAGAGGAA 58.238 39.130 0.00 0.00 0.00 3.36
7453 10312 4.395959 ACGTTTTTGACACTACAGAGGA 57.604 40.909 0.00 0.00 0.00 3.71
7454 10313 4.809426 AGAACGTTTTTGACACTACAGAGG 59.191 41.667 0.46 0.00 0.00 3.69
7455 10314 5.968387 AGAACGTTTTTGACACTACAGAG 57.032 39.130 0.46 0.00 0.00 3.35
7456 10315 9.701098 ATATAAGAACGTTTTTGACACTACAGA 57.299 29.630 13.87 0.00 0.00 3.41
7462 10321 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
7463 10322 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
7464 10323 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
7465 10324 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
7466 10325 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
7467 10326 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
7468 10327 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
7469 10328 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
7470 10329 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
7471 10330 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
7472 10331 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
7473 10332 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
7474 10333 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
7476 10335 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
7477 10336 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
7478 10337 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
7479 10338 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
7480 10339 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
7481 10340 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
7482 10341 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
7483 10342 2.969950 CAATTACTCCCTCCGTCCCATA 59.030 50.000 0.00 0.00 0.00 2.74
7484 10343 1.768870 CAATTACTCCCTCCGTCCCAT 59.231 52.381 0.00 0.00 0.00 4.00
7486 10345 1.138464 GACAATTACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
7488 10347 4.996788 TTAGACAATTACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
7489 10348 5.750352 TTTTAGACAATTACTCCCTCCGT 57.250 39.130 0.00 0.00 0.00 4.69
7533 10551 3.611766 GCTAACCAAGGTGCAACTTTAGC 60.612 47.826 23.83 23.83 31.80 3.09
7539 10557 2.194201 TAGGCTAACCAAGGTGCAAC 57.806 50.000 0.00 0.00 39.06 4.17
7554 10572 3.602483 TCCCAGACGTACAATTTTAGGC 58.398 45.455 0.00 0.00 0.00 3.93
7567 10585 1.742761 AAGTTGCATGATCCCAGACG 58.257 50.000 0.00 0.00 0.00 4.18
7626 10644 3.205959 ACATCCAACCATTCCCATCTCAT 59.794 43.478 0.00 0.00 0.00 2.90
7646 10664 6.639279 GCTTTTTAAAAGCGTTAGGATCAACA 59.361 34.615 23.75 0.00 33.20 3.33
7709 10727 1.409521 CCAAAAGGTGTGGGAGTGTCA 60.410 52.381 0.00 0.00 32.03 3.58
7737 10769 2.740981 GGTGAGTGCATTCTGTCTTCTG 59.259 50.000 10.82 0.00 0.00 3.02
7793 10826 7.964545 AAACATTGTCTTAACGAGTCAAAAC 57.035 32.000 0.00 0.00 37.06 2.43
7795 10828 9.493206 GTTAAAACATTGTCTTAACGAGTCAAA 57.507 29.630 9.37 0.00 37.06 2.69
7796 10829 8.124199 GGTTAAAACATTGTCTTAACGAGTCAA 58.876 33.333 15.87 0.00 36.71 3.18
7797 10830 7.280428 TGGTTAAAACATTGTCTTAACGAGTCA 59.720 33.333 15.87 8.28 36.71 3.41
7798 10831 7.632721 TGGTTAAAACATTGTCTTAACGAGTC 58.367 34.615 15.87 6.34 36.71 3.36
7799 10832 7.556733 TGGTTAAAACATTGTCTTAACGAGT 57.443 32.000 15.87 0.00 36.71 4.18
7800 10833 7.911205 TGTTGGTTAAAACATTGTCTTAACGAG 59.089 33.333 15.87 0.00 36.71 4.18
7801 10834 7.759465 TGTTGGTTAAAACATTGTCTTAACGA 58.241 30.769 15.87 11.38 36.71 3.85
7802 10835 7.972623 TGTTGGTTAAAACATTGTCTTAACG 57.027 32.000 15.87 0.00 36.71 3.18
7838 10871 8.267183 TCATACTATCACACAAGGACATGAAAT 58.733 33.333 0.00 0.00 0.00 2.17
7839 10872 7.619965 TCATACTATCACACAAGGACATGAAA 58.380 34.615 0.00 0.00 0.00 2.69
7840 10873 7.181569 TCATACTATCACACAAGGACATGAA 57.818 36.000 0.00 0.00 0.00 2.57
7841 10874 6.790232 TCATACTATCACACAAGGACATGA 57.210 37.500 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.