Multiple sequence alignment - TraesCS2A01G455100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G455100 | chr2A | 100.000 | 8594 | 0 | 0 | 1 | 8594 | 703868014 | 703876607 | 0.000000e+00 | 15871.0 |
1 | TraesCS2A01G455100 | chr2D | 94.723 | 4662 | 162 | 34 | 3994 | 8594 | 563789779 | 563794417 | 0.000000e+00 | 7169.0 |
2 | TraesCS2A01G455100 | chr2D | 96.400 | 3556 | 98 | 20 | 1 | 3533 | 563785745 | 563789293 | 0.000000e+00 | 5830.0 |
3 | TraesCS2A01G455100 | chr2D | 98.073 | 467 | 7 | 2 | 3529 | 3994 | 563789352 | 563789817 | 0.000000e+00 | 811.0 |
4 | TraesCS2A01G455100 | chr2B | 94.729 | 3282 | 115 | 27 | 727 | 3994 | 674029903 | 674033140 | 0.000000e+00 | 5049.0 |
5 | TraesCS2A01G455100 | chr2B | 92.555 | 1867 | 92 | 18 | 6742 | 8594 | 674035389 | 674037222 | 0.000000e+00 | 2634.0 |
6 | TraesCS2A01G455100 | chr2B | 92.547 | 738 | 38 | 10 | 1 | 731 | 674029134 | 674029861 | 0.000000e+00 | 1042.0 |
7 | TraesCS2A01G455100 | chr2B | 91.581 | 677 | 22 | 6 | 4763 | 5429 | 674034038 | 674034689 | 0.000000e+00 | 902.0 |
8 | TraesCS2A01G455100 | chr2B | 93.502 | 554 | 24 | 6 | 4214 | 4764 | 674033400 | 674033944 | 0.000000e+00 | 813.0 |
9 | TraesCS2A01G455100 | chr2B | 95.516 | 223 | 9 | 1 | 3994 | 4215 | 674033102 | 674033324 | 1.060000e-93 | 355.0 |
10 | TraesCS2A01G455100 | chr2B | 93.989 | 183 | 8 | 2 | 5980 | 6159 | 674035211 | 674035393 | 3.060000e-69 | 274.0 |
11 | TraesCS2A01G455100 | chr2B | 87.156 | 109 | 11 | 3 | 5897 | 6004 | 674035104 | 674035210 | 4.210000e-23 | 121.0 |
12 | TraesCS2A01G455100 | chr3B | 90.690 | 580 | 38 | 10 | 1843 | 2411 | 133770988 | 133771562 | 0.000000e+00 | 758.0 |
13 | TraesCS2A01G455100 | chr3B | 91.619 | 525 | 33 | 4 | 3419 | 3939 | 133773267 | 133773784 | 0.000000e+00 | 715.0 |
14 | TraesCS2A01G455100 | chr3B | 87.559 | 635 | 56 | 16 | 6063 | 6685 | 133774532 | 133775155 | 0.000000e+00 | 713.0 |
15 | TraesCS2A01G455100 | chr3B | 92.553 | 470 | 20 | 9 | 2969 | 3432 | 133772575 | 133773035 | 0.000000e+00 | 660.0 |
16 | TraesCS2A01G455100 | chr3B | 90.541 | 222 | 17 | 2 | 2685 | 2903 | 133771711 | 133771931 | 3.030000e-74 | 291.0 |
17 | TraesCS2A01G455100 | chr3B | 88.235 | 102 | 8 | 2 | 5141 | 5241 | 133773784 | 133773882 | 1.520000e-22 | 119.0 |
18 | TraesCS2A01G455100 | chr3B | 100.000 | 35 | 0 | 0 | 6676 | 6710 | 133775167 | 133775201 | 2.000000e-06 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G455100 | chr2A | 703868014 | 703876607 | 8593 | False | 15871.000000 | 15871 | 100.000000 | 1 | 8594 | 1 | chr2A.!!$F1 | 8593 |
1 | TraesCS2A01G455100 | chr2D | 563785745 | 563794417 | 8672 | False | 4603.333333 | 7169 | 96.398667 | 1 | 8594 | 3 | chr2D.!!$F1 | 8593 |
2 | TraesCS2A01G455100 | chr2B | 674029134 | 674037222 | 8088 | False | 1398.750000 | 5049 | 92.696875 | 1 | 8594 | 8 | chr2B.!!$F1 | 8593 |
3 | TraesCS2A01G455100 | chr3B | 133770988 | 133775201 | 4213 | False | 474.542857 | 758 | 91.599571 | 1843 | 6710 | 7 | chr3B.!!$F1 | 4867 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
810 | 872 | 0.530870 | GCTTCCTAGCACGGTCCATC | 60.531 | 60.000 | 0.00 | 0.00 | 46.95 | 3.51 | F |
1403 | 1467 | 0.460987 | GAGGCGATCAGGGTGAGTTG | 60.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 | F |
1971 | 2038 | 0.687354 | AAGATCGCCAACAGTCTGGT | 59.313 | 50.000 | 4.53 | 0.00 | 38.86 | 4.00 | F |
3149 | 3806 | 1.758440 | TTCGAGTGTTGCAGGGCTCT | 61.758 | 55.000 | 10.34 | 0.00 | 0.00 | 4.09 | F |
3972 | 4950 | 7.777440 | TGGTTACACTATGAATGAATATTGCCA | 59.223 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 | F |
5471 | 6807 | 1.428718 | GGGGTGGGGGTGTCTTGTTA | 61.429 | 60.000 | 0.00 | 0.00 | 0.00 | 2.41 | F |
5695 | 7320 | 1.696884 | TGACTTGTGGGTAGCATCACA | 59.303 | 47.619 | 0.57 | 0.57 | 41.47 | 3.58 | F |
7521 | 9190 | 0.179004 | AAGGAAATGCGGTCCACACA | 60.179 | 50.000 | 3.28 | 0.00 | 37.65 | 3.72 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2291 | 2366 | 0.973632 | TCAGTATTGGGTGAGCACGT | 59.026 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 | R |
2374 | 2450 | 3.901222 | TGGAACTGTAGTCTGGAACATCA | 59.099 | 43.478 | 0.00 | 0.00 | 38.20 | 3.07 | R |
3559 | 4534 | 5.392767 | ACAAACTGTCACTCGAGATACAT | 57.607 | 39.130 | 21.68 | 5.88 | 0.00 | 2.29 | R |
4053 | 5031 | 0.615331 | GGATGACTGGCAGTCCTTCA | 59.385 | 55.000 | 37.12 | 23.81 | 44.44 | 3.02 | R |
5711 | 7336 | 1.680522 | ATGTGCAGGCTCCGGACTAG | 61.681 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 | R |
7137 | 8806 | 0.323957 | GGTGTGGTGAAGACCTACCC | 59.676 | 60.000 | 0.00 | 0.00 | 43.58 | 3.69 | R |
7560 | 9229 | 0.826715 | GCCCTACTGAGATCTGCACA | 59.173 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 | R |
8456 | 10143 | 0.240145 | TGTGCGTACCTGTCGAGAAG | 59.760 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
303 | 305 | 7.451255 | TGGATGAAACATAACTTCCTTGAATGT | 59.549 | 33.333 | 0.00 | 0.00 | 33.41 | 2.71 |
356 | 362 | 1.413445 | GCCTGCTGAGATGAGAGACAT | 59.587 | 52.381 | 0.00 | 0.00 | 42.47 | 3.06 |
396 | 403 | 5.692654 | TCGTTTTTCTGTGTATTGTCATCGA | 59.307 | 36.000 | 0.00 | 0.00 | 0.00 | 3.59 |
476 | 485 | 4.148825 | CTTCCCGGCGACCCTCAG | 62.149 | 72.222 | 9.30 | 0.00 | 0.00 | 3.35 |
671 | 681 | 9.787532 | TTCTTAGCAAAATTACATTCTGCATAC | 57.212 | 29.630 | 0.00 | 0.00 | 35.44 | 2.39 |
721 | 733 | 0.542805 | GCCCATACTGGACCGGTTTA | 59.457 | 55.000 | 12.24 | 0.00 | 40.96 | 2.01 |
798 | 860 | 4.907875 | AGCTCTGTAATATTGGGCTTCCTA | 59.092 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
810 | 872 | 0.530870 | GCTTCCTAGCACGGTCCATC | 60.531 | 60.000 | 0.00 | 0.00 | 46.95 | 3.51 |
815 | 877 | 2.650813 | CTAGCACGGTCCATCCAGCC | 62.651 | 65.000 | 0.00 | 0.00 | 37.52 | 4.85 |
820 | 882 | 2.668632 | GGTCCATCCAGCCGAACA | 59.331 | 61.111 | 0.00 | 0.00 | 35.97 | 3.18 |
869 | 933 | 2.260869 | CCCTCGGCCTTGTTGTGTG | 61.261 | 63.158 | 0.00 | 0.00 | 0.00 | 3.82 |
1403 | 1467 | 0.460987 | GAGGCGATCAGGGTGAGTTG | 60.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1405 | 1469 | 1.296715 | GCGATCAGGGTGAGTTGGT | 59.703 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
1413 | 1478 | 0.755327 | GGGTGAGTTGGTGGCAGTTT | 60.755 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1679 | 1745 | 3.186909 | TCAGGTTCATGCTACGAATTCG | 58.813 | 45.455 | 25.64 | 25.64 | 46.33 | 3.34 |
1730 | 1796 | 6.267070 | GTCCAAGTACTCTAAGTATGCTGAC | 58.733 | 44.000 | 0.00 | 0.00 | 32.65 | 3.51 |
1859 | 1925 | 3.202906 | GGCGATATTGCTAACTTGGTGA | 58.797 | 45.455 | 14.65 | 0.00 | 34.52 | 4.02 |
1971 | 2038 | 0.687354 | AAGATCGCCAACAGTCTGGT | 59.313 | 50.000 | 4.53 | 0.00 | 38.86 | 4.00 |
2139 | 2207 | 6.772716 | AGGTATACTTCAGGTTTTATGCATGG | 59.227 | 38.462 | 10.16 | 0.00 | 0.00 | 3.66 |
2185 | 2253 | 7.757526 | TGATATAAGCGTGTTAATGCAACTTT | 58.242 | 30.769 | 0.00 | 0.00 | 41.09 | 2.66 |
2211 | 2279 | 7.012515 | TGTGAACCAACTACGATTGTATTGTTT | 59.987 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2370 | 2446 | 7.955864 | GGAAAGTCAAGCTTTTATAGTTGTACG | 59.044 | 37.037 | 0.00 | 0.00 | 46.54 | 3.67 |
2374 | 2450 | 9.649167 | AGTCAAGCTTTTATAGTTGTACGTTAT | 57.351 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
2388 | 2464 | 6.762702 | TGTACGTTATGATGTTCCAGACTA | 57.237 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
2486 | 2562 | 2.162319 | TGCGTTTCTGCAGTGATACA | 57.838 | 45.000 | 14.67 | 5.53 | 40.62 | 2.29 |
2546 | 2623 | 6.014327 | ACCTTTATCCATGCAAAGTCATTTGT | 60.014 | 34.615 | 0.00 | 0.99 | 46.26 | 2.83 |
2553 | 2630 | 6.939730 | TCCATGCAAAGTCATTTGTAGAGTTA | 59.060 | 34.615 | 0.00 | 0.00 | 46.26 | 2.24 |
2650 | 2727 | 8.577939 | CAAGCGATTGTTTTTAGTATGTTGATG | 58.422 | 33.333 | 4.96 | 0.00 | 0.00 | 3.07 |
2766 | 2843 | 8.489559 | GCAATGTATACAATATTTTGGTGCATG | 58.510 | 33.333 | 10.14 | 0.00 | 37.15 | 4.06 |
2982 | 3639 | 6.872020 | TGTTAGTTCACTTGCCTCTTATGTAC | 59.128 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2986 | 3643 | 7.852263 | AGTTCACTTGCCTCTTATGTACTTAT | 58.148 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
3149 | 3806 | 1.758440 | TTCGAGTGTTGCAGGGCTCT | 61.758 | 55.000 | 10.34 | 0.00 | 0.00 | 4.09 |
3559 | 4534 | 8.500753 | AATGCTTGAATTACCGATGTTAGTTA | 57.499 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
3971 | 4949 | 8.165239 | TGGTTACACTATGAATGAATATTGCC | 57.835 | 34.615 | 0.00 | 0.00 | 0.00 | 4.52 |
3972 | 4950 | 7.777440 | TGGTTACACTATGAATGAATATTGCCA | 59.223 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
3973 | 4951 | 8.796475 | GGTTACACTATGAATGAATATTGCCAT | 58.204 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
3977 | 4955 | 9.578576 | ACACTATGAATGAATATTGCCATACTT | 57.421 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
4053 | 5031 | 8.777578 | AGTTCTATGAACTAAAAGGGGTTTTT | 57.222 | 30.769 | 10.76 | 0.00 | 41.68 | 1.94 |
4198 | 5177 | 3.319405 | TCCAGCAAAGCCAATTTCGTTAA | 59.681 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
4516 | 5580 | 7.178451 | TGAAGACAAGTCCATAACAGTAGATGA | 59.822 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
4669 | 5735 | 7.932491 | CCATGGATCTGGATATGATATCAACTC | 59.068 | 40.741 | 5.56 | 9.16 | 38.69 | 3.01 |
4670 | 5736 | 8.706521 | CATGGATCTGGATATGATATCAACTCT | 58.293 | 37.037 | 9.99 | 0.00 | 0.00 | 3.24 |
4953 | 6114 | 4.100084 | CTGCGGAGGCACCCATCA | 62.100 | 66.667 | 0.00 | 0.00 | 46.21 | 3.07 |
5049 | 6212 | 7.725844 | TGATCCAGTGTGTATATATCTCTGTGT | 59.274 | 37.037 | 13.59 | 6.62 | 0.00 | 3.72 |
5167 | 6337 | 6.536224 | GTCCATAAGCTAATTGCAATGCTTTT | 59.464 | 34.615 | 30.53 | 23.44 | 42.22 | 2.27 |
5234 | 6404 | 2.171448 | ACCTAAGAAGATTGGCGCTGAT | 59.829 | 45.455 | 7.64 | 0.71 | 0.00 | 2.90 |
5267 | 6601 | 2.172505 | TGAAGAGACAGACCCTGCAAAA | 59.827 | 45.455 | 0.00 | 0.00 | 34.37 | 2.44 |
5324 | 6658 | 5.819825 | ACAGACTTTGTTTTCTCACTTCC | 57.180 | 39.130 | 0.00 | 0.00 | 36.31 | 3.46 |
5469 | 6805 | 3.182996 | GGGGTGGGGGTGTCTTGT | 61.183 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
5471 | 6807 | 1.428718 | GGGGTGGGGGTGTCTTGTTA | 61.429 | 60.000 | 0.00 | 0.00 | 0.00 | 2.41 |
5638 | 7261 | 3.629398 | TCGGAGTAGAACTAACCGGATTC | 59.371 | 47.826 | 9.46 | 6.43 | 43.14 | 2.52 |
5695 | 7320 | 1.696884 | TGACTTGTGGGTAGCATCACA | 59.303 | 47.619 | 0.57 | 0.57 | 41.47 | 3.58 |
5793 | 7418 | 2.612285 | TTTGCCCCCACATAACATCA | 57.388 | 45.000 | 0.00 | 0.00 | 0.00 | 3.07 |
5802 | 7427 | 6.881602 | GCCCCCACATAACATCAAAATAAAAA | 59.118 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
5848 | 7473 | 3.342377 | TTGTTCATCCCGAAGCATACA | 57.658 | 42.857 | 0.00 | 0.00 | 33.09 | 2.29 |
5875 | 7500 | 3.861840 | ACATAACTGGTTCGATGACAGG | 58.138 | 45.455 | 13.73 | 1.99 | 36.57 | 4.00 |
5969 | 7594 | 4.227754 | TGGCCTACAGAGTAGAGACTAACT | 59.772 | 45.833 | 3.32 | 0.00 | 35.45 | 2.24 |
6193 | 7823 | 7.119387 | AGCATACCTTTTAAGATAACTGGCTT | 58.881 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
6310 | 7941 | 4.664150 | ATAGTTGGGTGTTGTTTTGTGG | 57.336 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
6493 | 8131 | 4.963628 | ACTAGGGAGGAACTGATAACCTTC | 59.036 | 45.833 | 0.00 | 0.00 | 41.55 | 3.46 |
6498 | 8136 | 4.500035 | GGAGGAACTGATAACCTTCGCTAG | 60.500 | 50.000 | 0.00 | 0.00 | 41.55 | 3.42 |
6592 | 8230 | 3.030291 | CTGGACTAGATGGAAGTCTGCT | 58.970 | 50.000 | 0.00 | 0.00 | 42.48 | 4.24 |
6602 | 8240 | 3.405831 | TGGAAGTCTGCTTGATGAACAG | 58.594 | 45.455 | 0.00 | 0.00 | 34.61 | 3.16 |
6637 | 8276 | 5.648092 | ACAATGATAGTGGTTTACTTGCCTC | 59.352 | 40.000 | 0.00 | 0.00 | 40.89 | 4.70 |
6750 | 8408 | 9.851686 | ATGGACAATTGCTATTATTTGTCTAGA | 57.148 | 29.630 | 5.05 | 0.00 | 44.57 | 2.43 |
6777 | 8435 | 6.100279 | TCTCATGGACAGTTTATTGCCTATCT | 59.900 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
6901 | 8559 | 7.724061 | ACAACTTAGTGTCCTTATTTCAATGGT | 59.276 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
6943 | 8601 | 7.034685 | TGATTATTCAGCTCATTTCATGTGG | 57.965 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
6948 | 8606 | 3.008923 | TCAGCTCATTTCATGTGGTACCA | 59.991 | 43.478 | 11.60 | 11.60 | 33.72 | 3.25 |
7137 | 8806 | 8.709646 | GTTTACTTATATAGTTTGCCGAGATGG | 58.290 | 37.037 | 0.00 | 0.00 | 38.33 | 3.51 |
7173 | 8842 | 5.104485 | ACCACACCTTCCACTAGATATTTCC | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 3.13 |
7233 | 8902 | 3.620488 | CAGCTTTGCCACCCTCTTATTA | 58.380 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
7234 | 8903 | 4.210331 | CAGCTTTGCCACCCTCTTATTAT | 58.790 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
7264 | 8933 | 7.826260 | ACTGTTTAAATGTTTGTGTTCAAGG | 57.174 | 32.000 | 0.00 | 0.00 | 34.88 | 3.61 |
7288 | 8957 | 0.613777 | GCCGGGTCCTTATCATAGGG | 59.386 | 60.000 | 2.18 | 0.00 | 35.90 | 3.53 |
7310 | 8979 | 3.643792 | GGTCCTATCTACTGCCACTTGAT | 59.356 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
7481 | 9150 | 2.009774 | CTTTGGGTGCCAGTCGAATAG | 58.990 | 52.381 | 0.00 | 0.00 | 33.81 | 1.73 |
7521 | 9190 | 0.179004 | AAGGAAATGCGGTCCACACA | 60.179 | 50.000 | 3.28 | 0.00 | 37.65 | 3.72 |
7532 | 9201 | 1.607251 | GGTCCACACACTAGAAACCGG | 60.607 | 57.143 | 0.00 | 0.00 | 0.00 | 5.28 |
7564 | 9241 | 0.941542 | TGCTAAAAGGTCACGTGTGC | 59.058 | 50.000 | 16.51 | 9.75 | 0.00 | 4.57 |
7580 | 9257 | 0.249238 | GTGCAGATCTCAGTAGGGCG | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
7808 | 9485 | 2.422276 | ACAAATGCCGTTTCAGCTTC | 57.578 | 45.000 | 0.00 | 0.00 | 0.00 | 3.86 |
7938 | 9615 | 1.595794 | CGTCAGCCACGTTGTTTAACT | 59.404 | 47.619 | 0.00 | 0.00 | 44.07 | 2.24 |
7939 | 9616 | 2.031191 | CGTCAGCCACGTTGTTTAACTT | 59.969 | 45.455 | 0.00 | 0.00 | 44.07 | 2.66 |
7940 | 9617 | 3.359654 | GTCAGCCACGTTGTTTAACTTG | 58.640 | 45.455 | 0.00 | 0.00 | 36.22 | 3.16 |
7943 | 9620 | 2.098443 | AGCCACGTTGTTTAACTTGTGG | 59.902 | 45.455 | 20.88 | 20.88 | 44.45 | 4.17 |
7947 | 9624 | 1.331138 | CGTTGTTTAACTTGTGGGCGA | 59.669 | 47.619 | 0.00 | 0.00 | 34.60 | 5.54 |
7953 | 9630 | 1.847798 | TAACTTGTGGGCGAGGGCAT | 61.848 | 55.000 | 0.00 | 0.00 | 42.47 | 4.40 |
7975 | 9652 | 6.374333 | GCATTGTGACCTGATTTAGAAGGTTA | 59.626 | 38.462 | 0.00 | 0.00 | 46.97 | 2.85 |
7978 | 9655 | 6.698380 | TGTGACCTGATTTAGAAGGTTAGAC | 58.302 | 40.000 | 0.00 | 0.00 | 46.97 | 2.59 |
7991 | 9668 | 7.997773 | AGAAGGTTAGACTTTGGATTTTACC | 57.002 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
8098 | 9776 | 0.462937 | TATGCCATGTGGTACGGTGC | 60.463 | 55.000 | 0.35 | 0.00 | 37.57 | 5.01 |
8139 | 9817 | 6.867550 | TCTCATTCGTCTGATGTTGTATCTT | 58.132 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
8269 | 9947 | 1.760613 | TCGGGATTGCCGAACTATCTT | 59.239 | 47.619 | 17.54 | 0.00 | 36.73 | 2.40 |
8285 | 9963 | 0.104120 | TCTTGTCCATCCATACGCCG | 59.896 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
8288 | 9966 | 0.756294 | TGTCCATCCATACGCCGAAT | 59.244 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
8296 | 9974 | 2.066262 | CCATACGCCGAATCCACATAC | 58.934 | 52.381 | 0.00 | 0.00 | 0.00 | 2.39 |
8397 | 10084 | 0.471211 | TCTTGGGAACTCCGTCCTGT | 60.471 | 55.000 | 0.00 | 0.00 | 37.85 | 4.00 |
8399 | 10086 | 1.052124 | TTGGGAACTCCGTCCTGTGT | 61.052 | 55.000 | 0.00 | 0.00 | 37.85 | 3.72 |
8436 | 10123 | 4.447342 | CGGATGGGGCCCTTGCTT | 62.447 | 66.667 | 25.93 | 2.71 | 37.74 | 3.91 |
8456 | 10143 | 2.343758 | TCAGCCGACCTGACAAGC | 59.656 | 61.111 | 2.18 | 0.00 | 45.44 | 4.01 |
8542 | 10237 | 5.299028 | GCATCCCATATTCACATGTGTACAA | 59.701 | 40.000 | 24.63 | 12.85 | 0.00 | 2.41 |
8543 | 10238 | 6.016024 | GCATCCCATATTCACATGTGTACAAT | 60.016 | 38.462 | 24.63 | 18.52 | 0.00 | 2.71 |
8545 | 10240 | 6.899089 | TCCCATATTCACATGTGTACAATCT | 58.101 | 36.000 | 24.63 | 8.05 | 0.00 | 2.40 |
8552 | 10247 | 7.977789 | TTCACATGTGTACAATCTATGTTGT | 57.022 | 32.000 | 24.63 | 0.00 | 43.63 | 3.32 |
8553 | 10248 | 9.665719 | ATTCACATGTGTACAATCTATGTTGTA | 57.334 | 29.630 | 24.63 | 0.00 | 43.63 | 2.41 |
8562 | 10257 | 5.730550 | ACAATCTATGTTGTACGTGGATGT | 58.269 | 37.500 | 0.00 | 0.00 | 40.06 | 3.06 |
8586 | 10281 | 1.946768 | CCAGTTCGTTCCTCTTGCAAA | 59.053 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 9.369904 | ACAATTAAAATGATTAGATGCAACACC | 57.630 | 29.630 | 0.00 | 0.00 | 0.00 | 4.16 |
52 | 53 | 1.890876 | TTAGCGAAGAAAGGCTGCAA | 58.109 | 45.000 | 0.50 | 0.00 | 40.32 | 4.08 |
253 | 255 | 1.683917 | AGAGGTCAGCACATATCCGAC | 59.316 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
411 | 419 | 6.538381 | TGAGAAGCGCATATACATCTTTTCAA | 59.462 | 34.615 | 11.47 | 0.00 | 28.99 | 2.69 |
476 | 485 | 8.515414 | AGTTCAAAATAGGAAAGTAACTGCATC | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
798 | 860 | 4.101448 | GGCTGGATGGACCGTGCT | 62.101 | 66.667 | 6.77 | 0.00 | 42.61 | 4.40 |
810 | 872 | 2.813908 | GCCTACGTGTTCGGCTGG | 60.814 | 66.667 | 0.00 | 0.00 | 40.62 | 4.85 |
815 | 877 | 1.226491 | CCTACCGCCTACGTGTTCG | 60.226 | 63.158 | 0.00 | 0.00 | 43.34 | 3.95 |
816 | 878 | 1.517913 | GCCTACCGCCTACGTGTTC | 60.518 | 63.158 | 0.00 | 0.00 | 37.70 | 3.18 |
854 | 916 | 1.821759 | CCACACACAACAAGGCCGA | 60.822 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
856 | 918 | 3.128375 | CCCACACACAACAAGGCC | 58.872 | 61.111 | 0.00 | 0.00 | 0.00 | 5.19 |
869 | 933 | 1.227853 | ACTTGTCAGTTCGGCCCAC | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
1107 | 1171 | 3.947841 | CGCGAGGAGAGGAGCTCG | 61.948 | 72.222 | 7.83 | 0.00 | 44.91 | 5.03 |
1377 | 1441 | 2.543802 | CCTGATCGCCTCGTCGCTA | 61.544 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
1403 | 1467 | 7.116233 | CACAAATGAATAGTTAAAACTGCCACC | 59.884 | 37.037 | 5.62 | 0.00 | 40.07 | 4.61 |
1405 | 1469 | 7.651304 | CACACAAATGAATAGTTAAAACTGCCA | 59.349 | 33.333 | 5.62 | 1.80 | 40.07 | 4.92 |
1413 | 1478 | 6.451393 | GCCCAACACACAAATGAATAGTTAA | 58.549 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1434 | 1499 | 0.465460 | TAGCCAATTCACCATCGCCC | 60.465 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1679 | 1745 | 7.408123 | CAAGCAACTCTAGAACATCATCAATC | 58.592 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
1730 | 1796 | 1.804151 | CCAGTCACCACATACCAAACG | 59.196 | 52.381 | 0.00 | 0.00 | 0.00 | 3.60 |
1791 | 1857 | 5.917462 | AGGGAAACAAGTTTTTCAAGGATG | 58.083 | 37.500 | 0.00 | 0.00 | 37.24 | 3.51 |
1902 | 1969 | 4.572909 | GCAGGAGCAATTGGAGAAAAATT | 58.427 | 39.130 | 7.72 | 0.00 | 41.58 | 1.82 |
1971 | 2038 | 6.440647 | AGAGATATTACCAGTGGTTTGACTGA | 59.559 | 38.462 | 22.49 | 0.00 | 45.39 | 3.41 |
2155 | 2223 | 8.371770 | TGCATTAACACGCTTATATCAATGTA | 57.628 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
2185 | 2253 | 5.992829 | ACAATACAATCGTAGTTGGTTCACA | 59.007 | 36.000 | 0.00 | 0.00 | 33.40 | 3.58 |
2211 | 2279 | 1.609580 | GGTGTGCCTACGGAAATGTCA | 60.610 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
2240 | 2309 | 6.703165 | TGCAGAATAGCATGTGTACTTCATAG | 59.297 | 38.462 | 0.00 | 0.00 | 40.11 | 2.23 |
2241 | 2310 | 6.581712 | TGCAGAATAGCATGTGTACTTCATA | 58.418 | 36.000 | 0.00 | 0.00 | 40.11 | 2.15 |
2242 | 2311 | 5.430886 | TGCAGAATAGCATGTGTACTTCAT | 58.569 | 37.500 | 0.00 | 0.00 | 40.11 | 2.57 |
2243 | 2312 | 4.831107 | TGCAGAATAGCATGTGTACTTCA | 58.169 | 39.130 | 0.00 | 0.00 | 40.11 | 3.02 |
2291 | 2366 | 0.973632 | TCAGTATTGGGTGAGCACGT | 59.026 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2370 | 2446 | 6.535508 | GGAACTGTAGTCTGGAACATCATAAC | 59.464 | 42.308 | 0.00 | 0.00 | 38.20 | 1.89 |
2374 | 2450 | 3.901222 | TGGAACTGTAGTCTGGAACATCA | 59.099 | 43.478 | 0.00 | 0.00 | 38.20 | 3.07 |
2388 | 2464 | 6.879458 | GTCTATAATCAAGGTGTTGGAACTGT | 59.121 | 38.462 | 0.00 | 0.00 | 34.09 | 3.55 |
2553 | 2630 | 8.593945 | ATTCACACCATTTATAATCCAACTGT | 57.406 | 30.769 | 0.00 | 0.00 | 0.00 | 3.55 |
2567 | 2644 | 9.920946 | ACTATGACCTAAATAATTCACACCATT | 57.079 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
2637 | 2714 | 7.759489 | AAACTTGAAGGCATCAACATACTAA | 57.241 | 32.000 | 0.22 | 0.00 | 43.08 | 2.24 |
2674 | 2751 | 9.231297 | AGCATAAGAAACAGAACTAAAATAGCA | 57.769 | 29.630 | 0.00 | 0.00 | 0.00 | 3.49 |
2766 | 2843 | 4.712122 | TCTTAAAATCCAATGCGGGAAC | 57.288 | 40.909 | 0.00 | 0.00 | 41.12 | 3.62 |
3004 | 3661 | 7.438564 | ACACAAAAGGTTAGAACAAAAACACT | 58.561 | 30.769 | 0.00 | 0.00 | 0.00 | 3.55 |
3559 | 4534 | 5.392767 | ACAAACTGTCACTCGAGATACAT | 57.607 | 39.130 | 21.68 | 5.88 | 0.00 | 2.29 |
3994 | 4972 | 9.081204 | TGCTAAAGTATGGCAATATTCATTCAT | 57.919 | 29.630 | 0.00 | 0.00 | 32.79 | 2.57 |
3995 | 4973 | 8.462589 | TGCTAAAGTATGGCAATATTCATTCA | 57.537 | 30.769 | 0.00 | 0.00 | 32.79 | 2.57 |
4053 | 5031 | 0.615331 | GGATGACTGGCAGTCCTTCA | 59.385 | 55.000 | 37.12 | 23.81 | 44.44 | 3.02 |
4220 | 5276 | 0.749091 | CATTCCTCAGCATTCCGCCA | 60.749 | 55.000 | 0.00 | 0.00 | 44.04 | 5.69 |
4272 | 5328 | 2.621055 | TCAACGGCATGCTAAACTTGTT | 59.379 | 40.909 | 18.92 | 8.23 | 0.00 | 2.83 |
4678 | 5744 | 4.442375 | ACACGTTTGTTTGTTCAATCCA | 57.558 | 36.364 | 0.00 | 0.00 | 28.43 | 3.41 |
4766 | 5927 | 9.651913 | AAACAAGTCAAACACAAAGTCATAATT | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
5167 | 6337 | 4.526970 | AGCAACTTCCTGAAAGAGAAACA | 58.473 | 39.130 | 0.00 | 0.00 | 38.44 | 2.83 |
5234 | 6404 | 6.710744 | GGTCTGTCTCTTCATTGTTAAAAGGA | 59.289 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
5313 | 6647 | 7.561356 | AGGATTGAAAGAAAAGGAAGTGAGAAA | 59.439 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
5324 | 6658 | 7.176340 | AGGACAGATTGAGGATTGAAAGAAAAG | 59.824 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
5580 | 7202 | 5.265989 | AGTAACACTTTCCCCTTTGAAACA | 58.734 | 37.500 | 0.00 | 0.00 | 31.28 | 2.83 |
5695 | 7320 | 2.175284 | GACTAGGGTAGCCTACTCAGGT | 59.825 | 54.545 | 16.84 | 12.48 | 44.68 | 4.00 |
5711 | 7336 | 1.680522 | ATGTGCAGGCTCCGGACTAG | 61.681 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5802 | 7427 | 6.274157 | AGAAACTACAGTTGAGATCGTGAT | 57.726 | 37.500 | 0.00 | 0.00 | 38.44 | 3.06 |
5806 | 7431 | 7.630924 | ACAAAAAGAAACTACAGTTGAGATCG | 58.369 | 34.615 | 0.00 | 0.00 | 38.44 | 3.69 |
5848 | 7473 | 8.330466 | TGTCATCGAACCAGTTATGTTAAAAT | 57.670 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
5875 | 7500 | 6.506500 | AGGACTCATGTTCAAATCATCAAC | 57.493 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
5969 | 7594 | 4.649674 | GGACTAGTCAATGTCCTACATCCA | 59.350 | 45.833 | 23.91 | 0.00 | 46.65 | 3.41 |
6069 | 7696 | 1.217779 | GGACTCTGGCAGCTGACTC | 59.782 | 63.158 | 22.80 | 9.76 | 0.00 | 3.36 |
6098 | 7725 | 7.822161 | TGATTATGTTATGTGCTGGCTATTT | 57.178 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
6193 | 7823 | 5.188434 | GTTCAAATCCTCCATCTGACATCA | 58.812 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
6279 | 7909 | 9.693739 | AAACAACACCCAACTATATAATCATCA | 57.306 | 29.630 | 0.00 | 0.00 | 0.00 | 3.07 |
6493 | 8131 | 1.140375 | GTACCCACCGGTTCTAGCG | 59.860 | 63.158 | 2.97 | 0.00 | 40.58 | 4.26 |
6498 | 8136 | 3.941573 | TCATTTAAGTACCCACCGGTTC | 58.058 | 45.455 | 2.97 | 0.00 | 40.58 | 3.62 |
6592 | 8230 | 2.437651 | TCTCACCACCACTGTTCATCAA | 59.562 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
6602 | 8240 | 3.935203 | CACTATCATTGTCTCACCACCAC | 59.065 | 47.826 | 0.00 | 0.00 | 0.00 | 4.16 |
6637 | 8276 | 5.860716 | GCTTGAAGCTGTAATTTGGAAGAAG | 59.139 | 40.000 | 10.44 | 0.00 | 38.45 | 2.85 |
6750 | 8408 | 5.513233 | AGGCAATAAACTGTCCATGAGATT | 58.487 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
6901 | 8559 | 8.477419 | AATAATCAAACAGGAAAAAGGAGACA | 57.523 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
6943 | 8601 | 2.351738 | GCAACAAATCTGGCAGTGGTAC | 60.352 | 50.000 | 15.27 | 0.00 | 0.00 | 3.34 |
6948 | 8606 | 0.593128 | GACGCAACAAATCTGGCAGT | 59.407 | 50.000 | 15.27 | 0.00 | 0.00 | 4.40 |
7076 | 8734 | 2.416972 | GGTGAATGTAGTCAGACGGGTC | 60.417 | 54.545 | 0.00 | 0.00 | 0.00 | 4.46 |
7137 | 8806 | 0.323957 | GGTGTGGTGAAGACCTACCC | 59.676 | 60.000 | 0.00 | 0.00 | 43.58 | 3.69 |
7173 | 8842 | 4.487714 | TTAGGCTGACATAAACCAGAGG | 57.512 | 45.455 | 0.00 | 0.00 | 32.37 | 3.69 |
7233 | 8902 | 8.940768 | ACACAAACATTTAAACAGTTAAGCAT | 57.059 | 26.923 | 7.94 | 0.00 | 30.92 | 3.79 |
7234 | 8903 | 8.764524 | AACACAAACATTTAAACAGTTAAGCA | 57.235 | 26.923 | 7.94 | 0.00 | 30.92 | 3.91 |
7251 | 8920 | 1.269257 | GGCTCAGCCTTGAACACAAAC | 60.269 | 52.381 | 9.09 | 0.00 | 46.69 | 2.93 |
7264 | 8933 | 1.069935 | GATAAGGACCCGGCTCAGC | 59.930 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
7277 | 8946 | 6.322712 | GCAGTAGATAGGACCCCTATGATAAG | 59.677 | 46.154 | 10.03 | 0.26 | 45.78 | 1.73 |
7288 | 8957 | 3.031736 | TCAAGTGGCAGTAGATAGGACC | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
7310 | 8979 | 8.052748 | ACCCTTAGTGATGTTTAATAATGAGCA | 58.947 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
7521 | 9190 | 1.207329 | GAGGCATCACCGGTTTCTAGT | 59.793 | 52.381 | 2.97 | 0.00 | 46.52 | 2.57 |
7560 | 9229 | 0.826715 | GCCCTACTGAGATCTGCACA | 59.173 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
7564 | 9241 | 1.606668 | GTCTCGCCCTACTGAGATCTG | 59.393 | 57.143 | 0.00 | 0.00 | 42.73 | 2.90 |
7580 | 9257 | 4.452455 | CAGTGAAATGTTACACCCTGTCTC | 59.548 | 45.833 | 0.00 | 0.00 | 37.69 | 3.36 |
7696 | 9373 | 9.710900 | GAAGAATAATTTCCTCACATGGTTTTT | 57.289 | 29.630 | 0.00 | 0.00 | 31.84 | 1.94 |
7779 | 9456 | 5.527951 | TGAAACGGCATTTGTTACTCTACAA | 59.472 | 36.000 | 0.00 | 0.00 | 36.30 | 2.41 |
7780 | 9457 | 5.057819 | TGAAACGGCATTTGTTACTCTACA | 58.942 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
7781 | 9458 | 5.600908 | TGAAACGGCATTTGTTACTCTAC | 57.399 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
7782 | 9459 | 4.153475 | GCTGAAACGGCATTTGTTACTCTA | 59.847 | 41.667 | 0.00 | 0.00 | 35.55 | 2.43 |
7783 | 9460 | 3.058224 | GCTGAAACGGCATTTGTTACTCT | 60.058 | 43.478 | 0.00 | 0.00 | 35.55 | 3.24 |
7784 | 9461 | 3.058224 | AGCTGAAACGGCATTTGTTACTC | 60.058 | 43.478 | 5.39 | 0.00 | 38.37 | 2.59 |
7785 | 9462 | 2.884639 | AGCTGAAACGGCATTTGTTACT | 59.115 | 40.909 | 5.39 | 0.00 | 38.37 | 2.24 |
7858 | 9535 | 3.135457 | TCGTCGCACGATAGGCCA | 61.135 | 61.111 | 5.01 | 0.00 | 46.73 | 5.36 |
7938 | 9615 | 2.676121 | CAATGCCCTCGCCCACAA | 60.676 | 61.111 | 0.00 | 0.00 | 0.00 | 3.33 |
7939 | 9616 | 3.965258 | ACAATGCCCTCGCCCACA | 61.965 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
7940 | 9617 | 3.443045 | CACAATGCCCTCGCCCAC | 61.443 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
7943 | 9620 | 3.134127 | GGTCACAATGCCCTCGCC | 61.134 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
7947 | 9624 | 2.610438 | AAATCAGGTCACAATGCCCT | 57.390 | 45.000 | 0.00 | 0.00 | 0.00 | 5.19 |
7953 | 9630 | 7.016268 | AGTCTAACCTTCTAAATCAGGTCACAA | 59.984 | 37.037 | 0.00 | 0.00 | 43.05 | 3.33 |
7960 | 9637 | 9.454859 | AATCCAAAGTCTAACCTTCTAAATCAG | 57.545 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
7961 | 9638 | 9.807921 | AAATCCAAAGTCTAACCTTCTAAATCA | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
7966 | 9643 | 8.662255 | TGGTAAAATCCAAAGTCTAACCTTCTA | 58.338 | 33.333 | 0.00 | 0.00 | 34.24 | 2.10 |
7967 | 9644 | 7.523415 | TGGTAAAATCCAAAGTCTAACCTTCT | 58.477 | 34.615 | 0.00 | 0.00 | 34.24 | 2.85 |
7968 | 9645 | 7.754851 | TGGTAAAATCCAAAGTCTAACCTTC | 57.245 | 36.000 | 0.00 | 0.00 | 34.24 | 3.46 |
7991 | 9668 | 6.425114 | ACTTGCCAATATCTTAGTAGCGATTG | 59.575 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
7996 | 9673 | 5.611374 | TGGACTTGCCAATATCTTAGTAGC | 58.389 | 41.667 | 0.00 | 0.00 | 45.87 | 3.58 |
8098 | 9776 | 6.252015 | CGAATGAGATATTTTGTGGCTGTTTG | 59.748 | 38.462 | 0.00 | 0.00 | 0.00 | 2.93 |
8139 | 9817 | 2.333926 | CAATGAAGACGACGTTAGGCA | 58.666 | 47.619 | 0.13 | 0.00 | 0.00 | 4.75 |
8199 | 9877 | 1.961277 | AGCAACAGCCTTCCGTTCG | 60.961 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
8206 | 9884 | 2.203451 | AGCAGCAGCAACAGCCTT | 60.203 | 55.556 | 3.17 | 0.00 | 45.49 | 4.35 |
8269 | 9947 | 0.756294 | ATTCGGCGTATGGATGGACA | 59.244 | 50.000 | 6.85 | 0.00 | 0.00 | 4.02 |
8285 | 9963 | 2.746472 | GCACCTGAGGGTATGTGGATTC | 60.746 | 54.545 | 2.38 | 0.00 | 45.41 | 2.52 |
8288 | 9966 | 1.271840 | GGCACCTGAGGGTATGTGGA | 61.272 | 60.000 | 2.38 | 0.00 | 45.41 | 4.02 |
8456 | 10143 | 0.240145 | TGTGCGTACCTGTCGAGAAG | 59.760 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
8508 | 10195 | 2.277672 | TATGGGATGCCAACCCCGTG | 62.278 | 60.000 | 11.10 | 0.00 | 46.21 | 4.94 |
8523 | 10214 | 9.276590 | ACATAGATTGTACACATGTGAATATGG | 57.723 | 33.333 | 31.94 | 15.74 | 36.57 | 2.74 |
8562 | 10257 | 3.007506 | TGCAAGAGGAACGAACTGGAATA | 59.992 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.