Multiple sequence alignment - TraesCS2A01G454900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G454900 chr2A 100.000 4814 0 0 1 4814 703705919 703710732 0.000000e+00 8890
1 TraesCS2A01G454900 chr2A 95.181 166 7 1 2342 2507 419206980 419206816 1.330000e-65 261
2 TraesCS2A01G454900 chr2A 91.304 138 10 2 2148 2284 703707927 703708063 2.290000e-43 187
3 TraesCS2A01G454900 chr2A 91.304 138 10 2 2009 2145 703708066 703708202 2.290000e-43 187
4 TraesCS2A01G454900 chr2A 97.727 88 2 0 3091 3178 632952994 632952907 8.340000e-33 152
5 TraesCS2A01G454900 chr2A 90.741 108 6 4 3083 3187 138434511 138434617 1.810000e-29 141
6 TraesCS2A01G454900 chr2D 92.634 1507 68 18 887 2367 563301842 563303331 0.000000e+00 2128
7 TraesCS2A01G454900 chr2D 87.858 733 66 9 4050 4777 563306611 563307325 0.000000e+00 839
8 TraesCS2A01G454900 chr2D 89.723 613 44 8 2485 3095 563303366 563303961 0.000000e+00 765
9 TraesCS2A01G454900 chr2D 94.118 476 27 1 3173 3647 563303956 563304431 0.000000e+00 723
10 TraesCS2A01G454900 chr2D 93.023 301 14 3 3647 3944 563305854 563306150 2.660000e-117 433
11 TraesCS2A01G454900 chr2D 76.000 850 111 41 97 889 563300704 563301517 2.130000e-93 353
12 TraesCS2A01G454900 chr2D 91.549 142 11 1 2009 2150 563303110 563303250 1.370000e-45 195
13 TraesCS2A01G454900 chr2D 92.029 138 9 2 2148 2284 563302971 563303107 4.920000e-45 193
14 TraesCS2A01G454900 chr2D 95.699 93 4 0 3091 3183 382456025 382455933 3.000000e-32 150
15 TraesCS2A01G454900 chr2D 83.140 172 19 5 1907 2078 563302790 563302951 1.080000e-31 148
16 TraesCS2A01G454900 chr2B 91.458 1475 74 20 895 2348 673959063 673960506 0.000000e+00 1978
17 TraesCS2A01G454900 chr2B 92.711 782 41 8 3175 3944 673961082 673961859 0.000000e+00 1114
18 TraesCS2A01G454900 chr2B 92.975 726 43 7 4056 4777 673966028 673966749 0.000000e+00 1051
19 TraesCS2A01G454900 chr2B 91.695 590 36 6 2506 3095 673960509 673961085 0.000000e+00 806
20 TraesCS2A01G454900 chr2B 75.059 842 149 35 104 903 673956778 673957600 7.720000e-88 335
21 TraesCS2A01G454900 chr2B 92.754 138 8 2 2148 2284 673960168 673960304 1.060000e-46 198
22 TraesCS2A01G454900 chr2B 97.115 104 3 0 3945 4048 673961898 673962001 4.950000e-40 176
23 TraesCS2A01G454900 chr7A 96.319 163 5 1 2345 2507 451519972 451519811 2.860000e-67 267
24 TraesCS2A01G454900 chr3D 93.370 181 9 3 2333 2512 187836295 187836473 1.030000e-66 265
25 TraesCS2A01G454900 chr3D 95.699 93 4 0 3091 3183 302930386 302930478 3.000000e-32 150
26 TraesCS2A01G454900 chr3A 93.370 181 9 3 2336 2515 238686381 238686203 1.030000e-66 265
27 TraesCS2A01G454900 chr3A 94.737 171 8 1 2345 2515 600921016 600920847 1.030000e-66 265
28 TraesCS2A01G454900 chr5A 93.678 174 10 1 2345 2518 605231304 605231132 4.780000e-65 259
29 TraesCS2A01G454900 chr3B 92.265 181 10 4 2333 2512 269251977 269252154 2.220000e-63 254
30 TraesCS2A01G454900 chr4B 91.803 183 11 4 2340 2521 532434997 532435176 8.000000e-63 252
31 TraesCS2A01G454900 chr1A 92.222 180 10 4 2330 2509 385897473 385897648 8.000000e-63 252
32 TraesCS2A01G454900 chr1A 95.699 93 4 0 3090 3182 527083929 527084021 3.000000e-32 150
33 TraesCS2A01G454900 chr1D 93.000 100 7 0 3090 3189 307830189 307830090 3.880000e-31 147
34 TraesCS2A01G454900 chr6D 94.624 93 5 0 3092 3184 41237291 41237199 1.400000e-30 145
35 TraesCS2A01G454900 chr6A 94.624 93 5 0 3092 3184 51882712 51882620 1.400000e-30 145
36 TraesCS2A01G454900 chr4D 90.566 106 9 1 3091 3196 64347446 64347342 6.500000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G454900 chr2A 703705919 703710732 4813 False 3088.000000 8890 94.202667 1 4814 3 chr2A.!!$F2 4813
1 TraesCS2A01G454900 chr2D 563300704 563307325 6621 False 641.888889 2128 88.897111 97 4777 9 chr2D.!!$F1 4680
2 TraesCS2A01G454900 chr2B 673966028 673966749 721 False 1051.000000 1051 92.975000 4056 4777 1 chr2B.!!$F1 721
3 TraesCS2A01G454900 chr2B 673956778 673962001 5223 False 767.833333 1978 90.132000 104 4048 6 chr2B.!!$F2 3944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.180171 CTGGTCCGAACATGCCCATA 59.820 55.0 0.0 0.0 0.0 2.74 F
50 51 0.180171 TGGTCCGAACATGCCCATAG 59.820 55.0 0.0 0.0 0.0 2.23 F
1971 3596 0.034863 TTCCGGTTCAGTATTGCCCC 60.035 55.0 0.0 0.0 0.0 5.80 F
3575 5220 0.109597 CTGGCATTGAACTTGACGGC 60.110 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 3581 0.252197 ACTCGGGGCAATACTGAACC 59.748 55.0 0.00 0.00 0.00 3.62 R
1978 3603 0.462047 CCAATGGCACTAGTCGACCC 60.462 60.0 13.01 6.38 0.00 4.46 R
3638 5283 0.593128 GTGCAACCCACACATGACTC 59.407 55.0 0.00 0.00 44.06 3.36 R
4791 8233 0.038343 CAACCACGCAGGGGAAAATG 60.038 55.0 3.78 0.00 43.89 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.430248 AAAGGAAACCACGTGAAGGT 57.570 45.000 19.30 3.08 42.34 3.50
27 28 3.886324 AACCACGTGAAGGTTCCAA 57.114 47.368 19.30 0.00 45.98 3.53
28 29 2.131776 AACCACGTGAAGGTTCCAAA 57.868 45.000 19.30 0.00 45.98 3.28
29 30 1.385528 ACCACGTGAAGGTTCCAAAC 58.614 50.000 19.30 0.00 35.33 2.93
30 31 3.525864 AACCACGTGAAGGTTCCAAACC 61.526 50.000 19.30 0.43 45.98 3.27
39 40 3.407443 GTTCCAAACCTGGTCCGAA 57.593 52.632 0.00 0.00 43.97 4.30
40 41 0.949397 GTTCCAAACCTGGTCCGAAC 59.051 55.000 14.16 14.16 43.97 3.95
41 42 0.547075 TTCCAAACCTGGTCCGAACA 59.453 50.000 0.00 0.00 43.97 3.18
42 43 0.768622 TCCAAACCTGGTCCGAACAT 59.231 50.000 0.00 0.00 43.97 2.71
43 44 0.881118 CCAAACCTGGTCCGAACATG 59.119 55.000 0.00 0.00 38.00 3.21
44 45 0.240945 CAAACCTGGTCCGAACATGC 59.759 55.000 0.00 0.00 0.00 4.06
45 46 0.893727 AAACCTGGTCCGAACATGCC 60.894 55.000 0.00 0.00 0.00 4.40
46 47 2.438434 CCTGGTCCGAACATGCCC 60.438 66.667 0.00 0.00 0.00 5.36
47 48 2.350895 CTGGTCCGAACATGCCCA 59.649 61.111 0.00 0.00 0.00 5.36
48 49 1.077501 CTGGTCCGAACATGCCCAT 60.078 57.895 0.00 0.00 0.00 4.00
49 50 0.180171 CTGGTCCGAACATGCCCATA 59.820 55.000 0.00 0.00 0.00 2.74
50 51 0.180171 TGGTCCGAACATGCCCATAG 59.820 55.000 0.00 0.00 0.00 2.23
51 52 0.468226 GGTCCGAACATGCCCATAGA 59.532 55.000 0.00 0.00 0.00 1.98
52 53 1.134220 GGTCCGAACATGCCCATAGAA 60.134 52.381 0.00 0.00 0.00 2.10
53 54 1.940613 GTCCGAACATGCCCATAGAAC 59.059 52.381 0.00 0.00 0.00 3.01
54 55 1.134220 TCCGAACATGCCCATAGAACC 60.134 52.381 0.00 0.00 0.00 3.62
55 56 1.134098 CCGAACATGCCCATAGAACCT 60.134 52.381 0.00 0.00 0.00 3.50
56 57 2.643551 CGAACATGCCCATAGAACCTT 58.356 47.619 0.00 0.00 0.00 3.50
57 58 3.016736 CGAACATGCCCATAGAACCTTT 58.983 45.455 0.00 0.00 0.00 3.11
58 59 3.065371 CGAACATGCCCATAGAACCTTTC 59.935 47.826 0.00 0.00 0.00 2.62
59 60 4.273318 GAACATGCCCATAGAACCTTTCT 58.727 43.478 0.00 0.00 43.72 2.52
60 61 5.437060 GAACATGCCCATAGAACCTTTCTA 58.563 41.667 0.00 0.00 45.58 2.10
61 62 5.450818 ACATGCCCATAGAACCTTTCTAA 57.549 39.130 0.00 0.00 44.75 2.10
62 63 5.826643 ACATGCCCATAGAACCTTTCTAAA 58.173 37.500 0.00 0.00 44.75 1.85
63 64 6.252995 ACATGCCCATAGAACCTTTCTAAAA 58.747 36.000 0.00 0.00 44.75 1.52
64 65 6.152831 ACATGCCCATAGAACCTTTCTAAAAC 59.847 38.462 0.00 0.00 44.75 2.43
65 66 5.887754 TGCCCATAGAACCTTTCTAAAACT 58.112 37.500 0.00 0.00 44.75 2.66
66 67 6.311735 TGCCCATAGAACCTTTCTAAAACTT 58.688 36.000 0.00 0.00 44.75 2.66
67 68 6.433093 TGCCCATAGAACCTTTCTAAAACTTC 59.567 38.462 0.00 0.00 44.75 3.01
68 69 6.659668 GCCCATAGAACCTTTCTAAAACTTCT 59.340 38.462 0.00 0.00 44.75 2.85
69 70 7.827729 GCCCATAGAACCTTTCTAAAACTTCTA 59.172 37.037 0.00 0.00 44.75 2.10
70 71 9.163899 CCCATAGAACCTTTCTAAAACTTCTAC 57.836 37.037 0.00 0.00 44.75 2.59
71 72 9.720769 CCATAGAACCTTTCTAAAACTTCTACA 57.279 33.333 0.00 0.00 44.75 2.74
87 88 8.498054 AACTTCTACATGATCTACAATGTTGG 57.502 34.615 0.00 0.00 0.00 3.77
88 89 7.050377 ACTTCTACATGATCTACAATGTTGGG 58.950 38.462 0.00 1.76 0.00 4.12
89 90 5.368145 TCTACATGATCTACAATGTTGGGC 58.632 41.667 0.00 0.00 0.00 5.36
90 91 4.240881 ACATGATCTACAATGTTGGGCT 57.759 40.909 0.00 0.00 0.00 5.19
91 92 3.949754 ACATGATCTACAATGTTGGGCTG 59.050 43.478 0.00 0.00 0.00 4.85
92 93 3.003394 TGATCTACAATGTTGGGCTGG 57.997 47.619 0.00 0.00 0.00 4.85
93 94 2.301346 GATCTACAATGTTGGGCTGGG 58.699 52.381 0.00 0.00 0.00 4.45
94 95 0.331278 TCTACAATGTTGGGCTGGGG 59.669 55.000 0.00 0.00 0.00 4.96
95 96 1.304879 TACAATGTTGGGCTGGGGC 60.305 57.895 0.00 0.00 37.82 5.80
96 97 3.762247 CAATGTTGGGCTGGGGCG 61.762 66.667 0.00 0.00 39.81 6.13
97 98 4.299796 AATGTTGGGCTGGGGCGT 62.300 61.111 0.00 0.00 39.81 5.68
98 99 3.826265 AATGTTGGGCTGGGGCGTT 62.826 57.895 0.00 0.00 39.81 4.84
99 100 3.826265 ATGTTGGGCTGGGGCGTTT 62.826 57.895 0.00 0.00 39.81 3.60
100 101 3.680786 GTTGGGCTGGGGCGTTTC 61.681 66.667 0.00 0.00 39.81 2.78
156 162 7.776618 TCCTCAATGGAGTAATATATGACGT 57.223 36.000 0.00 0.00 40.56 4.34
170 176 7.807977 ATATATGACGTGCTTTTGGAAAGAT 57.192 32.000 0.00 0.00 0.00 2.40
183 189 7.519032 TTTTGGAAAGATCTGGAACGTAATT 57.481 32.000 0.00 0.00 0.00 1.40
188 194 4.569719 AGATCTGGAACGTAATTGGGTT 57.430 40.909 0.00 0.00 0.00 4.11
201 207 0.693622 TTGGGTTGTCGGCAATAGGA 59.306 50.000 5.40 0.00 36.92 2.94
211 217 3.190535 GTCGGCAATAGGATGTTTGTTGT 59.809 43.478 0.00 0.00 0.00 3.32
212 218 3.190327 TCGGCAATAGGATGTTTGTTGTG 59.810 43.478 0.00 0.00 0.00 3.33
214 220 2.916716 GCAATAGGATGTTTGTTGTGCG 59.083 45.455 0.00 0.00 0.00 5.34
227 233 3.482436 TGTTGTGCGGTTTCCTAAATCT 58.518 40.909 0.00 0.00 0.00 2.40
232 238 7.390996 TGTTGTGCGGTTTCCTAAATCTATTTA 59.609 33.333 0.00 0.00 0.00 1.40
234 240 7.107542 TGTGCGGTTTCCTAAATCTATTTACT 58.892 34.615 0.00 0.00 0.00 2.24
260 266 8.667987 TTATTCAATGTCATTTTTAGCGTGAC 57.332 30.769 0.00 0.00 41.90 3.67
266 274 6.462073 TGTCATTTTTAGCGTGACTAACTC 57.538 37.500 6.34 0.00 40.63 3.01
293 303 0.836606 TCTTCCACTGGCACAAGACA 59.163 50.000 0.00 0.00 38.70 3.41
295 305 2.158623 TCTTCCACTGGCACAAGACAAT 60.159 45.455 0.00 0.00 38.70 2.71
296 306 1.896220 TCCACTGGCACAAGACAATC 58.104 50.000 0.00 0.00 38.70 2.67
297 307 1.421268 TCCACTGGCACAAGACAATCT 59.579 47.619 0.00 0.00 38.70 2.40
298 308 1.808945 CCACTGGCACAAGACAATCTC 59.191 52.381 0.00 0.00 38.70 2.75
299 309 1.808945 CACTGGCACAAGACAATCTCC 59.191 52.381 0.00 0.00 38.70 3.71
300 310 1.701847 ACTGGCACAAGACAATCTCCT 59.298 47.619 0.00 0.00 38.70 3.69
301 311 2.289945 ACTGGCACAAGACAATCTCCTC 60.290 50.000 0.00 0.00 38.70 3.71
306 316 3.195396 GCACAAGACAATCTCCTCTCTCT 59.805 47.826 0.00 0.00 0.00 3.10
315 332 2.096248 TCTCCTCTCTCTTCCGCTTTC 58.904 52.381 0.00 0.00 0.00 2.62
323 340 1.457303 CTCTTCCGCTTTCGAGTGTTG 59.543 52.381 0.00 0.00 38.10 3.33
350 367 3.083349 CATGGGGCGGAGTGGAGA 61.083 66.667 0.00 0.00 0.00 3.71
360 377 1.092345 GGAGTGGAGAAGATTGCCGC 61.092 60.000 0.00 0.00 0.00 6.53
370 387 0.254178 AGATTGCCGCTGTCTCCATT 59.746 50.000 0.00 0.00 0.00 3.16
382 399 4.390297 GCTGTCTCCATTCTTTGTGTAGTC 59.610 45.833 0.00 0.00 0.00 2.59
383 400 5.541845 CTGTCTCCATTCTTTGTGTAGTCA 58.458 41.667 0.00 0.00 0.00 3.41
384 401 6.114187 TGTCTCCATTCTTTGTGTAGTCAT 57.886 37.500 0.00 0.00 0.00 3.06
385 402 6.166279 TGTCTCCATTCTTTGTGTAGTCATC 58.834 40.000 0.00 0.00 0.00 2.92
386 403 5.582665 GTCTCCATTCTTTGTGTAGTCATCC 59.417 44.000 0.00 0.00 0.00 3.51
387 404 4.843728 TCCATTCTTTGTGTAGTCATCCC 58.156 43.478 0.00 0.00 0.00 3.85
388 405 4.288366 TCCATTCTTTGTGTAGTCATCCCA 59.712 41.667 0.00 0.00 0.00 4.37
389 406 5.009631 CCATTCTTTGTGTAGTCATCCCAA 58.990 41.667 0.00 0.00 0.00 4.12
390 407 5.653769 CCATTCTTTGTGTAGTCATCCCAAT 59.346 40.000 0.00 0.00 0.00 3.16
391 408 6.405065 CCATTCTTTGTGTAGTCATCCCAATG 60.405 42.308 0.00 0.00 0.00 2.82
393 410 3.364460 TTGTGTAGTCATCCCAATGGG 57.636 47.619 13.28 13.28 46.11 4.00
426 466 6.135290 TCATCTCGAATAAAAGGCATTTGG 57.865 37.500 0.00 0.00 32.27 3.28
450 490 2.300152 TCAATCCTATCCTCATGGCGTC 59.700 50.000 0.00 0.00 0.00 5.19
472 512 3.581755 TGTACAACATTGTCGTAGAGCC 58.418 45.455 0.00 0.00 42.35 4.70
484 524 1.461127 CGTAGAGCCTGTGAGTTTTGC 59.539 52.381 0.00 0.00 0.00 3.68
492 532 2.955660 CCTGTGAGTTTTGCCCTTGTTA 59.044 45.455 0.00 0.00 0.00 2.41
512 552 2.536761 TTCTTCATGAACGACGGGTT 57.463 45.000 3.38 0.00 42.96 4.11
513 553 2.536761 TCTTCATGAACGACGGGTTT 57.463 45.000 3.38 0.00 39.50 3.27
514 554 3.663995 TCTTCATGAACGACGGGTTTA 57.336 42.857 3.38 0.00 39.50 2.01
515 555 4.196626 TCTTCATGAACGACGGGTTTAT 57.803 40.909 3.38 0.00 39.50 1.40
516 556 4.571919 TCTTCATGAACGACGGGTTTATT 58.428 39.130 3.38 0.00 39.50 1.40
517 557 4.998672 TCTTCATGAACGACGGGTTTATTT 59.001 37.500 3.38 0.00 39.50 1.40
518 558 5.470777 TCTTCATGAACGACGGGTTTATTTT 59.529 36.000 3.38 0.00 39.50 1.82
519 559 5.285798 TCATGAACGACGGGTTTATTTTC 57.714 39.130 0.00 0.00 39.50 2.29
520 560 4.755629 TCATGAACGACGGGTTTATTTTCA 59.244 37.500 0.00 0.00 39.50 2.69
521 561 4.735662 TGAACGACGGGTTTATTTTCAG 57.264 40.909 0.00 0.00 39.50 3.02
522 562 4.128643 TGAACGACGGGTTTATTTTCAGT 58.871 39.130 0.00 0.00 39.50 3.41
523 563 5.295950 TGAACGACGGGTTTATTTTCAGTA 58.704 37.500 0.00 0.00 39.50 2.74
524 564 5.933463 TGAACGACGGGTTTATTTTCAGTAT 59.067 36.000 0.00 0.00 39.50 2.12
525 565 5.789710 ACGACGGGTTTATTTTCAGTATG 57.210 39.130 0.00 0.00 37.54 2.39
526 566 4.632688 ACGACGGGTTTATTTTCAGTATGG 59.367 41.667 0.00 0.00 36.16 2.74
527 567 4.632688 CGACGGGTTTATTTTCAGTATGGT 59.367 41.667 0.00 0.00 36.16 3.55
528 568 5.122711 CGACGGGTTTATTTTCAGTATGGTT 59.877 40.000 0.00 0.00 36.16 3.67
529 569 6.348704 CGACGGGTTTATTTTCAGTATGGTTT 60.349 38.462 0.00 0.00 36.16 3.27
530 570 6.916440 ACGGGTTTATTTTCAGTATGGTTTC 58.084 36.000 0.00 0.00 36.16 2.78
531 571 6.717997 ACGGGTTTATTTTCAGTATGGTTTCT 59.282 34.615 0.00 0.00 36.16 2.52
532 572 7.231925 ACGGGTTTATTTTCAGTATGGTTTCTT 59.768 33.333 0.00 0.00 36.16 2.52
533 573 7.540745 CGGGTTTATTTTCAGTATGGTTTCTTG 59.459 37.037 0.00 0.00 36.16 3.02
538 578 2.790433 TCAGTATGGTTTCTTGTGGGC 58.210 47.619 0.00 0.00 36.16 5.36
553 593 2.000447 GTGGGCTTCAAGTGTATCGTC 59.000 52.381 0.00 0.00 0.00 4.20
555 595 1.278238 GGCTTCAAGTGTATCGTCGG 58.722 55.000 0.00 0.00 0.00 4.79
557 597 0.914551 CTTCAAGTGTATCGTCGGCG 59.085 55.000 1.15 1.15 39.92 6.46
586 626 9.877178 AACATCGTCTTCTCTAACAATATCTTT 57.123 29.630 0.00 0.00 0.00 2.52
590 630 9.574458 TCGTCTTCTCTAACAATATCTTTTCTG 57.426 33.333 0.00 0.00 0.00 3.02
607 647 6.372659 TCTTTTCTGGAGTATTTGCTAGCAAG 59.627 38.462 27.82 15.27 37.24 4.01
608 648 4.142609 TCTGGAGTATTTGCTAGCAAGG 57.857 45.455 27.82 12.72 37.24 3.61
635 692 2.805671 TGTTTGACGTTGTCTGCCTATG 59.194 45.455 0.00 0.00 33.15 2.23
685 742 5.830912 TGTTTCTTTACAGGTCTTTGCATG 58.169 37.500 0.00 0.00 0.00 4.06
686 743 4.503741 TTCTTTACAGGTCTTTGCATGC 57.496 40.909 11.82 11.82 0.00 4.06
687 744 3.754965 TCTTTACAGGTCTTTGCATGCT 58.245 40.909 20.33 0.00 0.00 3.79
695 752 4.937620 CAGGTCTTTGCATGCTCTTTAGTA 59.062 41.667 20.33 0.00 0.00 1.82
697 754 6.094603 CAGGTCTTTGCATGCTCTTTAGTAAT 59.905 38.462 20.33 0.00 0.00 1.89
761 821 7.808672 TGGTACACCGACAATAAGTTTATTTG 58.191 34.615 0.00 0.00 39.43 2.32
763 823 7.747357 GGTACACCGACAATAAGTTTATTTGTG 59.253 37.037 0.00 8.89 31.28 3.33
764 824 6.674066 ACACCGACAATAAGTTTATTTGTGG 58.326 36.000 3.99 7.55 31.28 4.17
765 825 5.571357 CACCGACAATAAGTTTATTTGTGGC 59.429 40.000 3.99 0.00 31.28 5.01
767 827 6.015772 ACCGACAATAAGTTTATTTGTGGCTT 60.016 34.615 3.99 0.00 31.28 4.35
768 828 6.526674 CCGACAATAAGTTTATTTGTGGCTTC 59.473 38.462 3.99 0.00 31.28 3.86
769 829 6.248420 CGACAATAAGTTTATTTGTGGCTTCG 59.752 38.462 3.99 0.00 31.28 3.79
772 832 7.175293 ACAATAAGTTTATTTGTGGCTTCGGTA 59.825 33.333 0.00 0.00 31.28 4.02
774 834 6.394025 AAGTTTATTTGTGGCTTCGGTAAA 57.606 33.333 0.00 0.00 0.00 2.01
775 835 6.394025 AGTTTATTTGTGGCTTCGGTAAAA 57.606 33.333 0.00 0.00 0.00 1.52
776 836 6.807789 AGTTTATTTGTGGCTTCGGTAAAAA 58.192 32.000 0.00 0.00 0.00 1.94
777 837 6.921307 AGTTTATTTGTGGCTTCGGTAAAAAG 59.079 34.615 0.00 0.00 0.00 2.27
778 838 2.785713 TTGTGGCTTCGGTAAAAAGC 57.214 45.000 0.00 0.00 46.66 3.51
781 841 3.478509 TGTGGCTTCGGTAAAAAGCTTA 58.521 40.909 0.00 0.00 46.59 3.09
782 842 3.884091 TGTGGCTTCGGTAAAAAGCTTAA 59.116 39.130 0.00 0.00 46.59 1.85
783 843 4.338682 TGTGGCTTCGGTAAAAAGCTTAAA 59.661 37.500 0.00 0.00 46.59 1.52
784 844 4.915667 GTGGCTTCGGTAAAAAGCTTAAAG 59.084 41.667 0.00 0.00 46.59 1.85
785 845 4.822896 TGGCTTCGGTAAAAAGCTTAAAGA 59.177 37.500 0.00 0.00 46.59 2.52
786 846 5.475564 TGGCTTCGGTAAAAAGCTTAAAGAT 59.524 36.000 0.00 0.00 46.59 2.40
787 847 6.655848 TGGCTTCGGTAAAAAGCTTAAAGATA 59.344 34.615 0.00 0.00 46.59 1.98
788 848 6.965500 GGCTTCGGTAAAAAGCTTAAAGATAC 59.035 38.462 0.00 0.00 46.59 2.24
789 849 6.965500 GCTTCGGTAAAAAGCTTAAAGATACC 59.035 38.462 0.00 7.57 44.53 2.73
790 850 7.148289 GCTTCGGTAAAAAGCTTAAAGATACCT 60.148 37.037 0.00 0.00 44.53 3.08
791 851 9.374838 CTTCGGTAAAAAGCTTAAAGATACCTA 57.625 33.333 0.00 0.00 31.34 3.08
792 852 8.937634 TCGGTAAAAAGCTTAAAGATACCTAG 57.062 34.615 0.00 0.00 31.34 3.02
795 855 9.662947 GGTAAAAAGCTTAAAGATACCTAGTCA 57.337 33.333 0.00 0.00 0.00 3.41
802 862 9.381038 AGCTTAAAGATACCTAGTCATATTGGA 57.619 33.333 0.00 0.00 0.00 3.53
930 2542 5.652452 AGAATTTAGTGGCATTTACTGTCCC 59.348 40.000 0.00 0.00 0.00 4.46
1032 2644 1.594331 AAGCGGAAAGGTTGTGTCTC 58.406 50.000 0.00 0.00 39.39 3.36
1174 2791 4.760047 CGCAACCTCCCTCGGTGG 62.760 72.222 0.00 0.00 41.65 4.61
1355 2975 4.214327 GAGGCGGCGGAAGAGGAG 62.214 72.222 9.78 0.00 0.00 3.69
1443 3063 0.250640 CTTCAACTGGCTGGTGAGCT 60.251 55.000 12.03 0.00 44.09 4.09
1444 3064 0.535780 TTCAACTGGCTGGTGAGCTG 60.536 55.000 12.03 0.00 44.09 4.24
1445 3065 1.071987 CAACTGGCTGGTGAGCTGA 59.928 57.895 2.90 0.00 45.44 4.26
1446 3066 0.535780 CAACTGGCTGGTGAGCTGAA 60.536 55.000 2.90 0.00 45.44 3.02
1447 3067 0.250640 AACTGGCTGGTGAGCTGAAG 60.251 55.000 0.00 0.00 45.44 3.02
1477 3097 6.560253 TCTTGGTTGCTCTTATTGTTTCTC 57.440 37.500 0.00 0.00 0.00 2.87
1478 3098 5.473504 TCTTGGTTGCTCTTATTGTTTCTCC 59.526 40.000 0.00 0.00 0.00 3.71
1479 3099 4.079253 TGGTTGCTCTTATTGTTTCTCCC 58.921 43.478 0.00 0.00 0.00 4.30
1480 3100 3.444034 GGTTGCTCTTATTGTTTCTCCCC 59.556 47.826 0.00 0.00 0.00 4.81
1627 3250 5.982890 AGGTTTGTAATTGTGAATCCTGG 57.017 39.130 0.00 0.00 0.00 4.45
1633 3256 3.737559 AATTGTGAATCCTGGGCTACA 57.262 42.857 0.00 0.00 0.00 2.74
1654 3277 6.024552 ACAAGCTTCTGTTTTCTTTGTTCA 57.975 33.333 0.00 0.00 0.00 3.18
1662 3285 6.361433 TCTGTTTTCTTTGTTCAGTATCCCA 58.639 36.000 0.00 0.00 0.00 4.37
1703 3326 6.758886 CGCTCTGTTAGGTTTTTATCTGAGAT 59.241 38.462 0.00 0.00 0.00 2.75
1704 3327 7.254252 CGCTCTGTTAGGTTTTTATCTGAGATG 60.254 40.741 4.96 0.00 0.00 2.90
1733 3356 3.809832 TCAACTTCTCAGTTAGCTGTTGC 59.190 43.478 6.47 0.00 41.69 4.17
1767 3390 0.826715 TCCTGGCTCTGTGATGTAGC 59.173 55.000 0.00 0.00 35.47 3.58
1890 3515 0.912486 CGGGGAAGTTGAGGATTCCT 59.088 55.000 4.44 4.44 43.77 3.36
1932 3557 1.630369 AGTGCCATTGGAGCTGTAGAA 59.370 47.619 6.95 0.00 0.00 2.10
1956 3581 1.757118 TCAGGTAAGCTGAGGATTCCG 59.243 52.381 0.00 0.00 0.00 4.30
1971 3596 0.034863 TTCCGGTTCAGTATTGCCCC 60.035 55.000 0.00 0.00 0.00 5.80
1975 3600 0.252197 GGTTCAGTATTGCCCCGAGT 59.748 55.000 0.00 0.00 0.00 4.18
1978 3603 2.107950 TCAGTATTGCCCCGAGTTTG 57.892 50.000 0.00 0.00 0.00 2.93
2019 3658 2.300437 AGCTGTAGAGTGTTCAGGGAAC 59.700 50.000 2.25 2.25 42.26 3.62
2131 3770 3.821033 GGTAAACAACTTGGAGTGAGCAT 59.179 43.478 0.00 0.00 0.00 3.79
2186 3825 3.350219 TTCCACTTCAGTATTGCCCTC 57.650 47.619 0.00 0.00 0.00 4.30
2251 3890 4.701765 TGCTTAACAATTGCAATGTGGTT 58.298 34.783 13.82 18.49 33.48 3.67
2274 3913 1.302033 AACTTGGAGTGAGCAGCCG 60.302 57.895 0.00 0.00 0.00 5.52
2284 3923 1.523938 GAGCAGCCGTTATCCCCAC 60.524 63.158 0.00 0.00 0.00 4.61
2336 3975 1.940613 GCGAGTTTCTTCTGTGGTGTT 59.059 47.619 0.00 0.00 0.00 3.32
2352 3994 5.186409 TGTGGTGTTAGTAATGTACTCCCTC 59.814 44.000 0.00 0.00 40.14 4.30
2359 4001 2.249309 AATGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2367 4009 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2368 4010 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2369 4011 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2371 4013 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2373 4015 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2374 4016 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2402 4044 8.307483 AGAGATTCCAATATGAACTACATACGG 58.693 37.037 0.00 0.00 43.12 4.02
2403 4045 8.190326 AGATTCCAATATGAACTACATACGGA 57.810 34.615 0.00 0.00 43.12 4.69
2404 4046 8.307483 AGATTCCAATATGAACTACATACGGAG 58.693 37.037 0.00 0.00 42.33 4.63
2405 4047 5.779922 TCCAATATGAACTACATACGGAGC 58.220 41.667 0.00 0.00 43.12 4.70
2406 4048 5.303333 TCCAATATGAACTACATACGGAGCA 59.697 40.000 0.00 0.00 43.12 4.26
2407 4049 5.989168 CCAATATGAACTACATACGGAGCAA 59.011 40.000 0.00 0.00 43.12 3.91
2408 4050 6.481976 CCAATATGAACTACATACGGAGCAAA 59.518 38.462 0.00 0.00 43.12 3.68
2409 4051 7.011950 CCAATATGAACTACATACGGAGCAAAA 59.988 37.037 0.00 0.00 43.12 2.44
2410 4052 8.559536 CAATATGAACTACATACGGAGCAAAAT 58.440 33.333 0.00 0.00 43.12 1.82
2411 4053 5.794687 TGAACTACATACGGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
2412 4054 5.483811 TGAACTACATACGGAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
2413 4055 5.580691 TGAACTACATACGGAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
2414 4056 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2415 4057 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2416 4058 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2417 4059 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2418 4060 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2419 4061 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2420 4062 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2421 4063 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2422 4064 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2423 4065 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2424 4066 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2438 4080 9.469097 AGTGAATCTACACTCTAAACTACATCT 57.531 33.333 0.00 0.00 46.36 2.90
2467 4109 7.297936 ACATCCGTATGTAGTCCAATATTGA 57.702 36.000 17.23 0.46 44.66 2.57
2468 4110 7.732025 ACATCCGTATGTAGTCCAATATTGAA 58.268 34.615 17.23 0.00 44.66 2.69
2469 4111 8.208224 ACATCCGTATGTAGTCCAATATTGAAA 58.792 33.333 17.23 1.81 44.66 2.69
2470 4112 9.219603 CATCCGTATGTAGTCCAATATTGAAAT 57.780 33.333 17.23 0.00 0.00 2.17
2471 4113 8.827177 TCCGTATGTAGTCCAATATTGAAATC 57.173 34.615 17.23 4.40 0.00 2.17
2472 4114 8.647796 TCCGTATGTAGTCCAATATTGAAATCT 58.352 33.333 17.23 10.79 0.00 2.40
2473 4115 8.926710 CCGTATGTAGTCCAATATTGAAATCTC 58.073 37.037 17.23 3.82 0.00 2.75
2474 4116 9.698309 CGTATGTAGTCCAATATTGAAATCTCT 57.302 33.333 17.23 7.79 0.00 3.10
2534 4176 7.341805 ACATTATGGACTATGAACTGCTCTTT 58.658 34.615 0.00 0.00 0.00 2.52
2550 4192 4.019411 TGCTCTTTGGGTTCTATCACATGA 60.019 41.667 0.00 0.00 0.00 3.07
2557 4199 3.947196 GGGTTCTATCACATGATGTTGCA 59.053 43.478 0.00 0.00 36.05 4.08
2610 4252 5.705905 ACAGTCATTACTTGTTAGGCCTTTC 59.294 40.000 12.58 5.08 31.97 2.62
2624 4266 7.014711 TGTTAGGCCTTTCATTTTGTCATGTTA 59.985 33.333 12.58 0.00 0.00 2.41
2656 4300 9.389570 GTTGTGGTTCTATGTGTGTAAATTTAC 57.610 33.333 19.44 19.44 0.00 2.01
2684 4328 4.082026 GGAAGCAATACAAAATGGAGCAGT 60.082 41.667 0.00 0.00 0.00 4.40
2685 4329 5.473039 GAAGCAATACAAAATGGAGCAGTT 58.527 37.500 0.00 0.00 0.00 3.16
2686 4330 5.473066 AGCAATACAAAATGGAGCAGTTT 57.527 34.783 0.00 0.00 31.76 2.66
2687 4331 5.473039 AGCAATACAAAATGGAGCAGTTTC 58.527 37.500 0.00 0.00 29.07 2.78
2688 4332 5.244626 AGCAATACAAAATGGAGCAGTTTCT 59.755 36.000 0.00 0.00 29.07 2.52
2689 4333 5.574443 GCAATACAAAATGGAGCAGTTTCTC 59.426 40.000 0.00 0.00 29.07 2.87
2690 4334 6.680810 CAATACAAAATGGAGCAGTTTCTCA 58.319 36.000 0.00 0.00 29.07 3.27
2692 4336 5.596836 ACAAAATGGAGCAGTTTCTCAAA 57.403 34.783 0.00 0.00 29.07 2.69
2693 4337 5.976458 ACAAAATGGAGCAGTTTCTCAAAA 58.024 33.333 0.00 0.00 29.07 2.44
2694 4338 6.405538 ACAAAATGGAGCAGTTTCTCAAAAA 58.594 32.000 0.00 0.00 29.07 1.94
2697 4341 9.044150 CAAAATGGAGCAGTTTCTCAAAAATAA 57.956 29.630 0.00 0.00 29.07 1.40
2698 4342 9.612066 AAAATGGAGCAGTTTCTCAAAAATAAA 57.388 25.926 0.00 0.00 34.84 1.40
2699 4343 9.612066 AAATGGAGCAGTTTCTCAAAAATAAAA 57.388 25.926 0.00 0.00 34.84 1.52
2700 4344 9.612066 AATGGAGCAGTTTCTCAAAAATAAAAA 57.388 25.926 0.00 0.00 34.84 1.94
2740 4384 3.055530 AGTGCCTCTTCAGTTGAGTATGG 60.056 47.826 0.00 0.00 0.00 2.74
2956 4600 2.501723 GGAGATTAGACCCAAGCTGTCA 59.498 50.000 5.57 0.00 35.15 3.58
2978 4622 5.580691 TCAGCTCGGATAACTTACAAATGTG 59.419 40.000 0.00 0.00 0.00 3.21
3038 4682 0.745845 AGAGCTGGTTGCCTATTGCG 60.746 55.000 0.00 0.00 45.60 4.85
3086 4730 1.449778 GGTAAGTGAGCGGCCTTCC 60.450 63.158 0.00 0.00 0.00 3.46
3089 4733 0.902984 TAAGTGAGCGGCCTTCCTCA 60.903 55.000 12.04 12.04 35.84 3.86
3090 4734 2.125350 GTGAGCGGCCTTCCTCAG 60.125 66.667 15.32 0.00 38.65 3.35
3091 4735 2.604686 TGAGCGGCCTTCCTCAGT 60.605 61.111 12.04 0.00 33.44 3.41
3092 4736 1.304962 TGAGCGGCCTTCCTCAGTA 60.305 57.895 12.04 0.00 33.44 2.74
3093 4737 1.142097 GAGCGGCCTTCCTCAGTAC 59.858 63.158 0.00 0.00 0.00 2.73
3094 4738 1.305381 AGCGGCCTTCCTCAGTACT 60.305 57.895 0.00 0.00 0.00 2.73
3095 4739 1.142097 GCGGCCTTCCTCAGTACTC 59.858 63.158 0.00 0.00 0.00 2.59
3096 4740 1.817209 CGGCCTTCCTCAGTACTCC 59.183 63.158 0.00 0.00 0.00 3.85
3097 4741 1.677637 CGGCCTTCCTCAGTACTCCC 61.678 65.000 0.00 0.00 0.00 4.30
3098 4742 0.325765 GGCCTTCCTCAGTACTCCCT 60.326 60.000 0.00 0.00 0.00 4.20
3099 4743 1.116308 GCCTTCCTCAGTACTCCCTC 58.884 60.000 0.00 0.00 0.00 4.30
3100 4744 1.342574 GCCTTCCTCAGTACTCCCTCT 60.343 57.143 0.00 0.00 0.00 3.69
3101 4745 2.383855 CCTTCCTCAGTACTCCCTCTG 58.616 57.143 0.00 0.00 0.00 3.35
3102 4746 2.291930 CCTTCCTCAGTACTCCCTCTGT 60.292 54.545 0.00 0.00 33.89 3.41
3103 4747 3.053544 CCTTCCTCAGTACTCCCTCTGTA 60.054 52.174 0.00 0.00 33.89 2.74
3104 4748 4.570079 CCTTCCTCAGTACTCCCTCTGTAA 60.570 50.000 0.00 0.00 33.89 2.41
3105 4749 4.669866 TCCTCAGTACTCCCTCTGTAAA 57.330 45.455 0.00 0.00 33.89 2.01
3106 4750 4.601084 TCCTCAGTACTCCCTCTGTAAAG 58.399 47.826 0.00 0.00 33.89 1.85
3107 4751 4.291513 TCCTCAGTACTCCCTCTGTAAAGA 59.708 45.833 0.00 0.00 33.89 2.52
3108 4752 5.017490 CCTCAGTACTCCCTCTGTAAAGAA 58.983 45.833 0.00 0.00 33.89 2.52
3109 4753 5.480772 CCTCAGTACTCCCTCTGTAAAGAAA 59.519 44.000 0.00 0.00 33.89 2.52
3110 4754 6.155393 CCTCAGTACTCCCTCTGTAAAGAAAT 59.845 42.308 0.00 0.00 33.89 2.17
3111 4755 7.342284 CCTCAGTACTCCCTCTGTAAAGAAATA 59.658 40.741 0.00 0.00 33.89 1.40
3112 4756 8.840200 TCAGTACTCCCTCTGTAAAGAAATAT 57.160 34.615 0.00 0.00 33.89 1.28
3113 4757 9.931698 TCAGTACTCCCTCTGTAAAGAAATATA 57.068 33.333 0.00 0.00 33.89 0.86
3118 4762 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
3119 4763 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
3120 4764 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
3121 4765 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
3122 4766 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
3123 4767 9.907576 CTCTGTAAAGAAATATAAGAGCGTTTG 57.092 33.333 0.00 0.00 0.00 2.93
3124 4768 8.879759 TCTGTAAAGAAATATAAGAGCGTTTGG 58.120 33.333 0.00 0.00 0.00 3.28
3125 4769 8.780846 TGTAAAGAAATATAAGAGCGTTTGGA 57.219 30.769 0.00 0.00 0.00 3.53
3126 4770 9.391006 TGTAAAGAAATATAAGAGCGTTTGGAT 57.609 29.630 0.00 0.00 0.00 3.41
3127 4771 9.865484 GTAAAGAAATATAAGAGCGTTTGGATC 57.135 33.333 0.00 0.00 0.00 3.36
3128 4772 8.506168 AAAGAAATATAAGAGCGTTTGGATCA 57.494 30.769 0.00 0.00 32.03 2.92
3129 4773 7.484035 AGAAATATAAGAGCGTTTGGATCAC 57.516 36.000 0.00 0.00 32.03 3.06
3130 4774 7.275920 AGAAATATAAGAGCGTTTGGATCACT 58.724 34.615 0.00 0.00 32.03 3.41
3131 4775 8.421784 AGAAATATAAGAGCGTTTGGATCACTA 58.578 33.333 0.00 0.00 32.03 2.74
3132 4776 7.948278 AATATAAGAGCGTTTGGATCACTAC 57.052 36.000 0.00 0.00 32.03 2.73
3133 4777 3.963428 AAGAGCGTTTGGATCACTACT 57.037 42.857 0.00 0.00 32.03 2.57
3134 4778 3.963428 AGAGCGTTTGGATCACTACTT 57.037 42.857 0.00 0.00 32.03 2.24
3135 4779 4.273148 AGAGCGTTTGGATCACTACTTT 57.727 40.909 0.00 0.00 32.03 2.66
3136 4780 5.401531 AGAGCGTTTGGATCACTACTTTA 57.598 39.130 0.00 0.00 32.03 1.85
3137 4781 5.411781 AGAGCGTTTGGATCACTACTTTAG 58.588 41.667 0.00 0.00 32.03 1.85
3138 4782 5.047235 AGAGCGTTTGGATCACTACTTTAGT 60.047 40.000 0.00 0.00 40.28 2.24
3150 4794 5.148651 ACTACTTTAGTGATCCAAACGCT 57.851 39.130 0.00 0.00 37.69 5.07
3151 4795 5.169295 ACTACTTTAGTGATCCAAACGCTC 58.831 41.667 0.00 0.00 37.69 5.03
3152 4796 4.273148 ACTTTAGTGATCCAAACGCTCT 57.727 40.909 0.00 0.00 0.00 4.09
3153 4797 4.642429 ACTTTAGTGATCCAAACGCTCTT 58.358 39.130 0.00 0.00 0.00 2.85
3154 4798 5.790593 ACTTTAGTGATCCAAACGCTCTTA 58.209 37.500 0.00 0.00 0.00 2.10
3155 4799 6.407202 ACTTTAGTGATCCAAACGCTCTTAT 58.593 36.000 0.00 0.00 0.00 1.73
3156 4800 7.553334 ACTTTAGTGATCCAAACGCTCTTATA 58.447 34.615 0.00 0.00 0.00 0.98
3157 4801 8.204836 ACTTTAGTGATCCAAACGCTCTTATAT 58.795 33.333 0.00 0.00 0.00 0.86
3158 4802 8.958119 TTTAGTGATCCAAACGCTCTTATATT 57.042 30.769 0.00 0.00 0.00 1.28
3159 4803 8.958119 TTAGTGATCCAAACGCTCTTATATTT 57.042 30.769 0.00 0.00 0.00 1.40
3160 4804 7.484035 AGTGATCCAAACGCTCTTATATTTC 57.516 36.000 0.00 0.00 0.00 2.17
3161 4805 7.275920 AGTGATCCAAACGCTCTTATATTTCT 58.724 34.615 0.00 0.00 0.00 2.52
3162 4806 7.770897 AGTGATCCAAACGCTCTTATATTTCTT 59.229 33.333 0.00 0.00 0.00 2.52
3163 4807 8.398665 GTGATCCAAACGCTCTTATATTTCTTT 58.601 33.333 0.00 0.00 0.00 2.52
3164 4808 9.607988 TGATCCAAACGCTCTTATATTTCTTTA 57.392 29.630 0.00 0.00 0.00 1.85
3167 4811 8.836413 TCCAAACGCTCTTATATTTCTTTATGG 58.164 33.333 0.00 0.00 0.00 2.74
3168 4812 8.836413 CCAAACGCTCTTATATTTCTTTATGGA 58.164 33.333 0.00 0.00 0.00 3.41
3169 4813 9.869844 CAAACGCTCTTATATTTCTTTATGGAG 57.130 33.333 0.00 0.00 0.00 3.86
3170 4814 8.608844 AACGCTCTTATATTTCTTTATGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
3171 4815 7.162082 ACGCTCTTATATTTCTTTATGGAGGG 58.838 38.462 0.00 0.00 35.06 4.30
3188 4832 6.630203 TGGAGGGAGTACTTATTAAGCAAA 57.370 37.500 0.00 0.00 0.00 3.68
3210 4854 7.117236 GCAAATTGTGTTCATTTGATGAGATGT 59.883 33.333 9.11 0.00 40.94 3.06
3270 4914 5.104151 TGGTGATATTGAGGGCTTCATGTTA 60.104 40.000 0.00 0.00 35.27 2.41
3303 4947 4.083057 GCACAGAATCTTCTCTTTCCCAAC 60.083 45.833 0.00 0.00 34.74 3.77
3312 4956 4.280436 TCTCTTTCCCAACGCTATGAAA 57.720 40.909 0.00 0.00 0.00 2.69
3336 4980 2.568090 GATGGCCACCGTGCAAAG 59.432 61.111 8.16 0.00 0.00 2.77
3348 4992 2.675348 CCGTGCAAAGAAGAGAGAATCC 59.325 50.000 0.00 0.00 33.66 3.01
3380 5024 6.520792 GGTACGATTCAATGTGGTGTATAC 57.479 41.667 0.00 0.00 0.00 1.47
3381 5025 6.278363 GGTACGATTCAATGTGGTGTATACT 58.722 40.000 4.17 0.00 0.00 2.12
3385 5029 5.815222 CGATTCAATGTGGTGTATACTCCAA 59.185 40.000 24.49 16.18 40.69 3.53
3394 5038 5.063060 GTGGTGTATACTCCAAATTCACGAC 59.937 44.000 24.49 8.49 40.69 4.34
3400 5045 4.021102 ACTCCAAATTCACGACATCCTT 57.979 40.909 0.00 0.00 0.00 3.36
3499 5144 1.074752 CCAGAGAGAAGCTTCGCAAC 58.925 55.000 28.48 21.33 0.00 4.17
3519 5164 7.387673 TCGCAACTCAGATATCTTCAAGAAAAA 59.612 33.333 1.33 0.00 0.00 1.94
3539 5184 0.179062 ACTTGATGAGCCCGATGAGC 60.179 55.000 0.00 0.00 0.00 4.26
3575 5220 0.109597 CTGGCATTGAACTTGACGGC 60.110 55.000 0.00 0.00 0.00 5.68
3582 5227 0.599204 TGAACTTGACGGCGTTCTCC 60.599 55.000 16.19 0.78 40.04 3.71
3597 5242 1.357137 TCTCCTGTTGTATGGCACCA 58.643 50.000 0.00 0.00 0.00 4.17
3617 5262 3.594134 CAGAAGTGGTTCCAGACAGATC 58.406 50.000 0.00 0.00 32.48 2.75
3659 6735 1.153066 TCATGTGTGGGTTGCACGT 60.153 52.632 0.00 0.00 39.53 4.49
3669 6745 2.186826 GTTGCACGTGAAGCTGGGT 61.187 57.895 22.23 0.00 0.00 4.51
3683 6759 3.084039 AGCTGGGTTGATGTTGTATGTG 58.916 45.455 0.00 0.00 0.00 3.21
3739 6815 8.684520 TGAATTAGAGGTGTAGCTAGTTTCTAC 58.315 37.037 0.00 0.00 37.50 2.59
3788 6865 8.672214 AATTTGTCAGTTTGCAATTTGTTTTC 57.328 26.923 0.00 0.00 0.00 2.29
3790 6867 8.539770 TTTGTCAGTTTGCAATTTGTTTTCTA 57.460 26.923 0.00 0.00 0.00 2.10
3791 6868 8.539770 TTGTCAGTTTGCAATTTGTTTTCTAA 57.460 26.923 0.00 0.00 0.00 2.10
3792 6869 8.183830 TGTCAGTTTGCAATTTGTTTTCTAAG 57.816 30.769 0.00 0.00 0.00 2.18
3793 6870 7.119360 GTCAGTTTGCAATTTGTTTTCTAAGC 58.881 34.615 0.00 0.00 0.00 3.09
3817 6894 9.754382 AGCATTAAATATGTGGCTTATCAAAAG 57.246 29.630 0.00 0.00 0.00 2.27
3900 6980 5.899547 TCTAGAGGATGTAATGCTTCTCCAA 59.100 40.000 0.00 0.00 45.52 3.53
4240 7678 6.513180 TGCTTATATTCACCTAGTTTCTCCG 58.487 40.000 0.00 0.00 0.00 4.63
4248 7686 5.263599 TCACCTAGTTTCTCCGGTTATACA 58.736 41.667 0.00 0.00 0.00 2.29
4249 7687 5.359009 TCACCTAGTTTCTCCGGTTATACAG 59.641 44.000 0.00 0.00 0.00 2.74
4258 7696 4.119862 CTCCGGTTATACAGGTCAACATG 58.880 47.826 0.00 0.00 34.90 3.21
4296 7734 8.715191 TTATTTGACACAAAAGCAAAGAATGT 57.285 26.923 0.00 0.00 35.29 2.71
4297 7735 6.406093 TTTGACACAAAAGCAAAGAATGTG 57.594 33.333 2.90 2.90 45.18 3.21
4359 7798 6.646240 ACCTTTATTGTTTCATGCATGTGAAC 59.354 34.615 26.95 26.95 37.80 3.18
4360 7799 6.869913 CCTTTATTGTTTCATGCATGTGAACT 59.130 34.615 30.14 21.24 37.80 3.01
4361 7800 8.028354 CCTTTATTGTTTCATGCATGTGAACTA 58.972 33.333 30.14 26.57 37.80 2.24
4377 7816 5.709631 TGTGAACTAGCAATTTCCAGCATTA 59.290 36.000 0.00 0.00 0.00 1.90
4388 7827 7.415541 GCAATTTCCAGCATTACATAGTTGAGA 60.416 37.037 0.00 0.00 0.00 3.27
4428 7867 5.327616 TCGGAACTGTCATTTCGGTATAA 57.672 39.130 9.38 0.00 0.00 0.98
4547 7987 7.990541 TTTTGAATGTGTATGCTCATATTGC 57.009 32.000 0.00 0.00 31.29 3.56
4579 8020 7.090808 CCTAAGTTTTCCTTCTTTAATGTGGC 58.909 38.462 0.00 0.00 34.46 5.01
4650 8091 4.200447 AGGGCTCTATGTGTACTACCAT 57.800 45.455 0.00 0.00 0.00 3.55
4685 8126 4.058721 ACTTTGACAAGGGTGAAATTGC 57.941 40.909 2.08 0.00 33.82 3.56
4750 8192 2.288763 GCATCGTTTGGGAATTGGTTGT 60.289 45.455 0.00 0.00 0.00 3.32
4778 8220 5.480642 AATTCAATGGTTGTATGGTTGCA 57.519 34.783 0.00 0.00 0.00 4.08
4779 8221 5.680594 ATTCAATGGTTGTATGGTTGCAT 57.319 34.783 0.00 0.00 0.00 3.96
4780 8222 4.453177 TCAATGGTTGTATGGTTGCATG 57.547 40.909 0.00 0.00 0.00 4.06
4781 8223 3.831333 TCAATGGTTGTATGGTTGCATGT 59.169 39.130 0.00 0.00 0.00 3.21
4782 8224 4.282957 TCAATGGTTGTATGGTTGCATGTT 59.717 37.500 0.00 0.00 0.00 2.71
4783 8225 3.657015 TGGTTGTATGGTTGCATGTTG 57.343 42.857 0.00 0.00 0.00 3.33
4784 8226 3.225940 TGGTTGTATGGTTGCATGTTGA 58.774 40.909 0.00 0.00 0.00 3.18
4785 8227 3.255395 TGGTTGTATGGTTGCATGTTGAG 59.745 43.478 0.00 0.00 0.00 3.02
4786 8228 3.367292 GGTTGTATGGTTGCATGTTGAGG 60.367 47.826 0.00 0.00 0.00 3.86
4787 8229 2.445427 TGTATGGTTGCATGTTGAGGG 58.555 47.619 0.00 0.00 0.00 4.30
4788 8230 1.750778 GTATGGTTGCATGTTGAGGGG 59.249 52.381 0.00 0.00 0.00 4.79
4789 8231 0.615544 ATGGTTGCATGTTGAGGGGG 60.616 55.000 0.00 0.00 0.00 5.40
4805 8247 2.679996 GGGCATTTTCCCCTGCGT 60.680 61.111 0.00 0.00 40.51 5.24
4806 8248 2.573340 GGCATTTTCCCCTGCGTG 59.427 61.111 0.00 0.00 39.30 5.34
4807 8249 2.573340 GCATTTTCCCCTGCGTGG 59.427 61.111 0.00 0.00 0.00 4.94
4808 8250 2.275380 GCATTTTCCCCTGCGTGGT 61.275 57.895 0.00 0.00 0.00 4.16
4809 8251 1.815817 GCATTTTCCCCTGCGTGGTT 61.816 55.000 0.00 0.00 0.00 3.67
4810 8252 0.038343 CATTTTCCCCTGCGTGGTTG 60.038 55.000 0.00 0.00 0.00 3.77
4811 8253 1.815817 ATTTTCCCCTGCGTGGTTGC 61.816 55.000 0.00 0.00 0.00 4.17
4812 8254 3.723097 TTTCCCCTGCGTGGTTGCA 62.723 57.895 0.00 0.00 43.95 4.08
4813 8255 2.992817 TTTCCCCTGCGTGGTTGCAT 62.993 55.000 0.00 0.00 45.26 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.466827 ACCTTCACGTGGTTTCCTTTTAT 58.533 39.130 17.00 0.00 33.34 1.40
3 4 2.430248 ACCTTCACGTGGTTTCCTTT 57.570 45.000 17.00 0.00 33.34 3.11
4 5 2.294979 GAACCTTCACGTGGTTTCCTT 58.705 47.619 17.00 0.00 46.59 3.36
5 6 1.476291 GGAACCTTCACGTGGTTTCCT 60.476 52.381 17.00 0.00 46.59 3.36
6 7 0.949397 GGAACCTTCACGTGGTTTCC 59.051 55.000 17.00 17.00 46.59 3.13
7 8 1.670791 TGGAACCTTCACGTGGTTTC 58.329 50.000 17.00 11.56 46.59 2.78
8 9 2.131776 TTGGAACCTTCACGTGGTTT 57.868 45.000 17.00 3.65 46.59 3.27
10 11 1.385528 GTTTGGAACCTTCACGTGGT 58.614 50.000 17.00 2.35 39.91 4.16
25 26 0.240945 GCATGTTCGGACCAGGTTTG 59.759 55.000 0.00 0.00 0.00 2.93
26 27 0.893727 GGCATGTTCGGACCAGGTTT 60.894 55.000 0.00 0.00 0.00 3.27
27 28 1.303317 GGCATGTTCGGACCAGGTT 60.303 57.895 0.00 0.00 0.00 3.50
28 29 2.351276 GGCATGTTCGGACCAGGT 59.649 61.111 0.00 0.00 0.00 4.00
29 30 2.438434 GGGCATGTTCGGACCAGG 60.438 66.667 0.00 0.00 31.94 4.45
30 31 2.350895 TGGGCATGTTCGGACCAG 59.649 61.111 0.00 0.00 38.94 4.00
32 33 0.468226 TCTATGGGCATGTTCGGACC 59.532 55.000 0.00 0.00 0.00 4.46
33 34 1.940613 GTTCTATGGGCATGTTCGGAC 59.059 52.381 0.00 0.00 0.00 4.79
34 35 1.134220 GGTTCTATGGGCATGTTCGGA 60.134 52.381 0.00 0.00 0.00 4.55
35 36 1.134098 AGGTTCTATGGGCATGTTCGG 60.134 52.381 0.00 0.00 0.00 4.30
36 37 2.332063 AGGTTCTATGGGCATGTTCG 57.668 50.000 0.00 0.00 0.00 3.95
37 38 4.273318 AGAAAGGTTCTATGGGCATGTTC 58.727 43.478 0.00 0.00 38.49 3.18
38 39 4.322057 AGAAAGGTTCTATGGGCATGTT 57.678 40.909 0.00 0.00 38.49 2.71
39 40 5.450818 TTAGAAAGGTTCTATGGGCATGT 57.549 39.130 0.00 0.00 41.58 3.21
40 41 6.378280 AGTTTTAGAAAGGTTCTATGGGCATG 59.622 38.462 0.00 0.00 41.58 4.06
41 42 6.494059 AGTTTTAGAAAGGTTCTATGGGCAT 58.506 36.000 0.00 0.00 41.58 4.40
42 43 5.887754 AGTTTTAGAAAGGTTCTATGGGCA 58.112 37.500 0.00 0.00 41.58 5.36
43 44 6.659668 AGAAGTTTTAGAAAGGTTCTATGGGC 59.340 38.462 0.00 0.00 41.58 5.36
44 45 9.163899 GTAGAAGTTTTAGAAAGGTTCTATGGG 57.836 37.037 0.00 0.00 41.58 4.00
45 46 9.720769 TGTAGAAGTTTTAGAAAGGTTCTATGG 57.279 33.333 0.00 0.00 41.58 2.74
61 62 8.950210 CCAACATTGTAGATCATGTAGAAGTTT 58.050 33.333 0.00 0.00 0.00 2.66
62 63 7.554118 CCCAACATTGTAGATCATGTAGAAGTT 59.446 37.037 0.00 0.00 0.00 2.66
63 64 7.050377 CCCAACATTGTAGATCATGTAGAAGT 58.950 38.462 0.00 0.00 0.00 3.01
64 65 6.017605 GCCCAACATTGTAGATCATGTAGAAG 60.018 42.308 0.00 0.00 0.00 2.85
65 66 5.822519 GCCCAACATTGTAGATCATGTAGAA 59.177 40.000 0.00 0.00 0.00 2.10
66 67 5.130975 AGCCCAACATTGTAGATCATGTAGA 59.869 40.000 0.00 0.00 0.00 2.59
67 68 5.237996 CAGCCCAACATTGTAGATCATGTAG 59.762 44.000 0.00 0.00 0.00 2.74
68 69 5.125356 CAGCCCAACATTGTAGATCATGTA 58.875 41.667 0.00 0.00 0.00 2.29
69 70 3.949754 CAGCCCAACATTGTAGATCATGT 59.050 43.478 0.00 0.00 0.00 3.21
70 71 3.317149 CCAGCCCAACATTGTAGATCATG 59.683 47.826 0.00 0.00 0.00 3.07
71 72 3.559069 CCAGCCCAACATTGTAGATCAT 58.441 45.455 0.00 0.00 0.00 2.45
72 73 2.357050 CCCAGCCCAACATTGTAGATCA 60.357 50.000 0.00 0.00 0.00 2.92
73 74 2.301346 CCCAGCCCAACATTGTAGATC 58.699 52.381 0.00 0.00 0.00 2.75
74 75 1.063717 CCCCAGCCCAACATTGTAGAT 60.064 52.381 0.00 0.00 0.00 1.98
75 76 0.331278 CCCCAGCCCAACATTGTAGA 59.669 55.000 0.00 0.00 0.00 2.59
76 77 1.322538 GCCCCAGCCCAACATTGTAG 61.323 60.000 0.00 0.00 0.00 2.74
77 78 1.304879 GCCCCAGCCCAACATTGTA 60.305 57.895 0.00 0.00 0.00 2.41
78 79 2.604382 GCCCCAGCCCAACATTGT 60.604 61.111 0.00 0.00 0.00 2.71
79 80 3.762247 CGCCCCAGCCCAACATTG 61.762 66.667 0.00 0.00 34.57 2.82
80 81 3.826265 AACGCCCCAGCCCAACATT 62.826 57.895 0.00 0.00 34.57 2.71
81 82 3.826265 AAACGCCCCAGCCCAACAT 62.826 57.895 0.00 0.00 34.57 2.71
82 83 4.531426 AAACGCCCCAGCCCAACA 62.531 61.111 0.00 0.00 34.57 3.33
83 84 3.680786 GAAACGCCCCAGCCCAAC 61.681 66.667 0.00 0.00 34.57 3.77
95 96 5.672856 GCTATTTCTTGTCTATTGCGAAACG 59.327 40.000 0.00 0.00 0.00 3.60
96 97 5.965918 GGCTATTTCTTGTCTATTGCGAAAC 59.034 40.000 0.00 0.00 0.00 2.78
97 98 5.065988 GGGCTATTTCTTGTCTATTGCGAAA 59.934 40.000 0.00 0.00 0.00 3.46
98 99 4.574828 GGGCTATTTCTTGTCTATTGCGAA 59.425 41.667 0.00 0.00 0.00 4.70
99 100 4.127171 GGGCTATTTCTTGTCTATTGCGA 58.873 43.478 0.00 0.00 0.00 5.10
100 101 4.024556 CAGGGCTATTTCTTGTCTATTGCG 60.025 45.833 0.00 0.00 0.00 4.85
101 102 4.276926 CCAGGGCTATTTCTTGTCTATTGC 59.723 45.833 0.00 0.00 0.00 3.56
102 103 4.276926 GCCAGGGCTATTTCTTGTCTATTG 59.723 45.833 2.30 0.00 38.26 1.90
147 153 7.011389 CAGATCTTTCCAAAAGCACGTCATATA 59.989 37.037 0.00 0.00 0.00 0.86
152 158 3.365364 CCAGATCTTTCCAAAAGCACGTC 60.365 47.826 0.00 0.00 0.00 4.34
156 162 3.253188 CGTTCCAGATCTTTCCAAAAGCA 59.747 43.478 0.00 0.00 0.00 3.91
170 176 3.404899 GACAACCCAATTACGTTCCAGA 58.595 45.455 0.00 0.00 0.00 3.86
183 189 0.916086 ATCCTATTGCCGACAACCCA 59.084 50.000 0.00 0.00 38.99 4.51
188 194 3.066291 ACAAACATCCTATTGCCGACA 57.934 42.857 0.00 0.00 0.00 4.35
201 207 1.754226 AGGAAACCGCACAACAAACAT 59.246 42.857 0.00 0.00 0.00 2.71
211 217 8.570068 AAAGTAAATAGATTTAGGAAACCGCA 57.430 30.769 0.00 0.00 33.31 5.69
232 238 9.128107 CACGCTAAAAATGACATTGAATAAAGT 57.872 29.630 0.34 0.00 0.00 2.66
234 240 9.123709 GTCACGCTAAAAATGACATTGAATAAA 57.876 29.630 0.34 0.00 41.94 1.40
239 245 5.940192 AGTCACGCTAAAAATGACATTGA 57.060 34.783 0.34 0.00 44.26 2.57
240 246 7.298122 AGTTAGTCACGCTAAAAATGACATTG 58.702 34.615 0.34 0.00 44.26 2.82
246 252 8.555166 TTTTTGAGTTAGTCACGCTAAAAATG 57.445 30.769 0.00 0.00 40.94 2.32
279 289 1.808945 GGAGATTGTCTTGTGCCAGTG 59.191 52.381 0.00 0.00 0.00 3.66
293 303 2.452600 AGCGGAAGAGAGAGGAGATT 57.547 50.000 0.00 0.00 0.00 2.40
295 305 2.096248 GAAAGCGGAAGAGAGAGGAGA 58.904 52.381 0.00 0.00 0.00 3.71
296 306 1.202245 CGAAAGCGGAAGAGAGAGGAG 60.202 57.143 0.00 0.00 0.00 3.69
297 307 0.811915 CGAAAGCGGAAGAGAGAGGA 59.188 55.000 0.00 0.00 0.00 3.71
298 308 0.811915 TCGAAAGCGGAAGAGAGAGG 59.188 55.000 0.00 0.00 38.28 3.69
299 309 1.470890 ACTCGAAAGCGGAAGAGAGAG 59.529 52.381 8.79 0.00 38.28 3.20
300 310 1.200252 CACTCGAAAGCGGAAGAGAGA 59.800 52.381 8.79 0.00 38.28 3.10
301 311 1.068194 ACACTCGAAAGCGGAAGAGAG 60.068 52.381 8.79 4.38 38.28 3.20
306 316 0.531974 AGCAACACTCGAAAGCGGAA 60.532 50.000 0.00 0.00 38.28 4.30
334 351 2.285368 TTCTCCACTCCGCCCCAT 60.285 61.111 0.00 0.00 0.00 4.00
350 367 1.679311 TGGAGACAGCGGCAATCTT 59.321 52.632 1.45 0.00 35.01 2.40
370 387 4.588899 CCATTGGGATGACTACACAAAGA 58.411 43.478 0.00 0.00 35.16 2.52
385 402 3.380471 TGAAACTACCATCCCATTGGG 57.620 47.619 16.26 16.26 46.11 4.12
386 403 4.796606 AGATGAAACTACCATCCCATTGG 58.203 43.478 0.00 0.00 40.85 3.16
387 404 4.512944 CGAGATGAAACTACCATCCCATTG 59.487 45.833 0.00 0.00 40.85 2.82
388 405 4.408921 TCGAGATGAAACTACCATCCCATT 59.591 41.667 0.00 0.00 40.85 3.16
389 406 3.967326 TCGAGATGAAACTACCATCCCAT 59.033 43.478 0.00 0.00 40.85 4.00
390 407 3.371034 TCGAGATGAAACTACCATCCCA 58.629 45.455 0.00 0.00 40.85 4.37
391 408 4.402056 TTCGAGATGAAACTACCATCCC 57.598 45.455 0.00 0.00 40.85 3.85
393 410 8.552034 CCTTTTATTCGAGATGAAACTACCATC 58.448 37.037 0.00 0.00 40.71 3.51
394 411 7.012421 GCCTTTTATTCGAGATGAAACTACCAT 59.988 37.037 0.00 0.00 40.71 3.55
395 412 6.315393 GCCTTTTATTCGAGATGAAACTACCA 59.685 38.462 0.00 0.00 40.71 3.25
396 413 6.315393 TGCCTTTTATTCGAGATGAAACTACC 59.685 38.462 0.00 0.00 40.71 3.18
397 414 7.303634 TGCCTTTTATTCGAGATGAAACTAC 57.696 36.000 0.00 0.00 40.71 2.73
398 415 8.506168 AATGCCTTTTATTCGAGATGAAACTA 57.494 30.769 0.00 0.00 40.71 2.24
402 442 6.563422 CCAAATGCCTTTTATTCGAGATGAA 58.437 36.000 0.00 0.00 41.81 2.57
403 443 5.450412 GCCAAATGCCTTTTATTCGAGATGA 60.450 40.000 0.00 0.00 0.00 2.92
426 466 3.080319 GCCATGAGGATAGGATTGAAGC 58.920 50.000 0.00 0.00 36.89 3.86
435 475 2.623416 TGTACAGACGCCATGAGGATAG 59.377 50.000 0.00 0.00 36.89 2.08
436 476 2.661718 TGTACAGACGCCATGAGGATA 58.338 47.619 0.00 0.00 36.89 2.59
450 490 3.612860 GGCTCTACGACAATGTTGTACAG 59.387 47.826 9.30 9.99 42.43 2.74
472 512 4.853924 ATAACAAGGGCAAAACTCACAG 57.146 40.909 0.00 0.00 0.00 3.66
484 524 5.445939 CGTCGTTCATGAAGAATAACAAGGG 60.446 44.000 8.80 0.00 38.76 3.95
492 532 2.762535 ACCCGTCGTTCATGAAGAAT 57.237 45.000 8.80 0.00 38.76 2.40
512 552 7.524698 GCCCACAAGAAACCATACTGAAAATAA 60.525 37.037 0.00 0.00 0.00 1.40
513 553 6.071616 GCCCACAAGAAACCATACTGAAAATA 60.072 38.462 0.00 0.00 0.00 1.40
514 554 5.279456 GCCCACAAGAAACCATACTGAAAAT 60.279 40.000 0.00 0.00 0.00 1.82
515 555 4.038642 GCCCACAAGAAACCATACTGAAAA 59.961 41.667 0.00 0.00 0.00 2.29
516 556 3.572255 GCCCACAAGAAACCATACTGAAA 59.428 43.478 0.00 0.00 0.00 2.69
517 557 3.153919 GCCCACAAGAAACCATACTGAA 58.846 45.455 0.00 0.00 0.00 3.02
518 558 2.375174 AGCCCACAAGAAACCATACTGA 59.625 45.455 0.00 0.00 0.00 3.41
519 559 2.795329 AGCCCACAAGAAACCATACTG 58.205 47.619 0.00 0.00 0.00 2.74
520 560 3.181434 TGAAGCCCACAAGAAACCATACT 60.181 43.478 0.00 0.00 0.00 2.12
521 561 3.153919 TGAAGCCCACAAGAAACCATAC 58.846 45.455 0.00 0.00 0.00 2.39
522 562 3.517296 TGAAGCCCACAAGAAACCATA 57.483 42.857 0.00 0.00 0.00 2.74
523 563 2.380064 TGAAGCCCACAAGAAACCAT 57.620 45.000 0.00 0.00 0.00 3.55
524 564 2.031120 CTTGAAGCCCACAAGAAACCA 58.969 47.619 8.74 0.00 44.92 3.67
525 565 2.031870 ACTTGAAGCCCACAAGAAACC 58.968 47.619 17.69 0.00 44.92 3.27
526 566 2.427095 ACACTTGAAGCCCACAAGAAAC 59.573 45.455 17.69 0.00 44.92 2.78
527 567 2.733956 ACACTTGAAGCCCACAAGAAA 58.266 42.857 17.69 0.00 44.92 2.52
528 568 2.435372 ACACTTGAAGCCCACAAGAA 57.565 45.000 17.69 0.00 44.92 2.52
529 569 3.674997 GATACACTTGAAGCCCACAAGA 58.325 45.455 17.69 1.50 44.92 3.02
530 570 2.416547 CGATACACTTGAAGCCCACAAG 59.583 50.000 11.71 11.71 46.69 3.16
531 571 2.224426 ACGATACACTTGAAGCCCACAA 60.224 45.455 0.00 0.00 0.00 3.33
532 572 1.346395 ACGATACACTTGAAGCCCACA 59.654 47.619 0.00 0.00 0.00 4.17
533 573 2.000447 GACGATACACTTGAAGCCCAC 59.000 52.381 0.00 0.00 0.00 4.61
538 578 0.914551 CGCCGACGATACACTTGAAG 59.085 55.000 0.00 0.00 43.93 3.02
580 620 7.564793 TGCTAGCAAATACTCCAGAAAAGATA 58.435 34.615 16.84 0.00 0.00 1.98
581 621 6.418101 TGCTAGCAAATACTCCAGAAAAGAT 58.582 36.000 16.84 0.00 0.00 2.40
586 626 4.019321 ACCTTGCTAGCAAATACTCCAGAA 60.019 41.667 28.95 4.43 35.33 3.02
590 630 2.866762 CGACCTTGCTAGCAAATACTCC 59.133 50.000 28.95 14.42 35.33 3.85
607 647 2.094734 AGACAACGTCAAACAAACGACC 59.905 45.455 2.33 0.00 42.62 4.79
608 648 3.088552 CAGACAACGTCAAACAAACGAC 58.911 45.455 2.33 0.00 42.62 4.34
635 692 3.058293 TCATTGAACCATCGCAAACTGAC 60.058 43.478 0.00 0.00 0.00 3.51
709 766 7.308891 CCATAGCTCTCGTCAATAGACAGTATT 60.309 40.741 0.00 0.00 45.23 1.89
712 769 4.277174 CCATAGCTCTCGTCAATAGACAGT 59.723 45.833 0.00 0.00 45.23 3.55
713 770 4.277174 ACCATAGCTCTCGTCAATAGACAG 59.723 45.833 0.00 0.00 45.23 3.51
743 803 5.949735 AGCCACAAATAAACTTATTGTCGG 58.050 37.500 0.00 0.00 33.85 4.79
752 812 6.394025 TTTTACCGAAGCCACAAATAAACT 57.606 33.333 0.00 0.00 0.00 2.66
765 825 8.265165 AGGTATCTTTAAGCTTTTTACCGAAG 57.735 34.615 3.20 0.00 34.26 3.79
767 827 8.534496 ACTAGGTATCTTTAAGCTTTTTACCGA 58.466 33.333 3.20 5.20 34.26 4.69
768 828 8.713737 ACTAGGTATCTTTAAGCTTTTTACCG 57.286 34.615 3.20 1.39 34.26 4.02
769 829 9.662947 TGACTAGGTATCTTTAAGCTTTTTACC 57.337 33.333 3.20 9.22 0.00 2.85
776 836 9.381038 TCCAATATGACTAGGTATCTTTAAGCT 57.619 33.333 0.00 0.00 0.00 3.74
777 837 9.998106 TTCCAATATGACTAGGTATCTTTAAGC 57.002 33.333 0.00 0.00 0.00 3.09
930 2542 4.067896 ACACATGACCAGTTGAAAGCTAG 58.932 43.478 0.00 0.00 0.00 3.42
1174 2791 4.962836 CCTCGCATCCATGGGGGC 62.963 72.222 13.02 14.79 39.64 5.80
1355 2975 4.125695 CCGAACTCCCCGTCGTCC 62.126 72.222 0.00 0.00 0.00 4.79
1443 3063 1.888512 GCAACCAAGATGCTTCCTTCA 59.111 47.619 0.00 0.00 40.64 3.02
1444 3064 2.643933 GCAACCAAGATGCTTCCTTC 57.356 50.000 0.00 0.00 40.64 3.46
1627 3250 4.837896 AAGAAAACAGAAGCTTGTAGCC 57.162 40.909 2.10 0.00 43.77 3.93
1633 3256 6.272822 ACTGAACAAAGAAAACAGAAGCTT 57.727 33.333 0.00 0.00 33.53 3.74
1654 3277 7.041098 GCGAATAATCAATTGTTCTGGGATACT 60.041 37.037 5.13 0.00 36.24 2.12
1662 3285 6.992063 ACAGAGCGAATAATCAATTGTTCT 57.008 33.333 5.13 0.00 36.24 3.01
1703 3326 7.671302 AGCTAACTGAGAAGTTGAAATACTCA 58.329 34.615 1.42 0.00 36.42 3.41
1718 3341 2.291465 TGCAAAGCAACAGCTAACTGAG 59.709 45.455 0.00 0.00 40.25 3.35
1722 3345 2.733026 CCAATGCAAAGCAACAGCTAAC 59.267 45.455 0.00 0.00 43.62 2.34
1733 3356 3.004862 GCCAGGATTTTCCAATGCAAAG 58.995 45.455 0.00 0.00 39.61 2.77
1743 3366 3.350833 ACATCACAGAGCCAGGATTTTC 58.649 45.455 0.00 0.00 0.00 2.29
1767 3390 3.562973 CCTAGCAGCCAAATAGTGACATG 59.437 47.826 0.00 0.00 0.00 3.21
1794 3419 1.272781 GCTCGTAGCACTAGCAACTG 58.727 55.000 7.57 0.00 45.49 3.16
1806 3431 0.681564 AGTCAGTCCCTGGCTCGTAG 60.682 60.000 0.00 0.00 43.49 3.51
1890 3515 6.717289 ACTAATAAGTGGGCAATAGTGAACA 58.283 36.000 0.00 0.00 33.57 3.18
1956 3581 0.252197 ACTCGGGGCAATACTGAACC 59.748 55.000 0.00 0.00 0.00 3.62
1971 3596 1.978542 CACTAGTCGACCCAAACTCG 58.021 55.000 13.01 0.00 0.00 4.18
1975 3600 0.981183 ATGGCACTAGTCGACCCAAA 59.019 50.000 13.01 0.00 0.00 3.28
1978 3603 0.462047 CCAATGGCACTAGTCGACCC 60.462 60.000 13.01 6.38 0.00 4.46
2019 3658 5.121811 CAATACTGAAGTGGAATCCTCAGG 58.878 45.833 17.74 0.00 0.00 3.86
2020 3659 4.574013 GCAATACTGAAGTGGAATCCTCAG 59.426 45.833 13.51 13.51 0.00 3.35
2131 3770 4.225042 CCTGAACATATGGGGATAATCGGA 59.775 45.833 7.80 0.00 0.00 4.55
2186 3825 2.096496 GGATCTTTGTTGACGGATGCTG 59.904 50.000 0.00 0.00 0.00 4.41
2190 3829 3.703001 AGTGGATCTTTGTTGACGGAT 57.297 42.857 0.00 0.00 0.00 4.18
2197 3836 8.552296 AGATGGTCTAATAAGTGGATCTTTGTT 58.448 33.333 0.00 0.00 37.56 2.83
2251 3890 2.878406 GCTGCTCACTCCAAGTTGTTTA 59.122 45.455 1.45 0.00 0.00 2.01
2274 3913 4.259356 GTTGAAGTACAGGTGGGGATAAC 58.741 47.826 0.00 0.00 0.00 1.89
2284 3923 2.571653 TGATGAGGGGTTGAAGTACAGG 59.428 50.000 0.00 0.00 0.00 4.00
2336 3975 4.079558 AGGAACGGAGGGAGTACATTACTA 60.080 45.833 0.00 0.00 39.59 1.82
2376 4018 8.307483 CCGTATGTAGTTCATATTGGAATCTCT 58.693 37.037 5.56 0.00 40.54 3.10
2379 4021 7.063544 GCTCCGTATGTAGTTCATATTGGAATC 59.936 40.741 11.96 6.35 41.44 2.52
2380 4022 6.874134 GCTCCGTATGTAGTTCATATTGGAAT 59.126 38.462 11.96 0.00 41.44 3.01
2381 4023 6.183360 TGCTCCGTATGTAGTTCATATTGGAA 60.183 38.462 11.96 1.11 41.44 3.53
2384 4026 7.477144 TTTGCTCCGTATGTAGTTCATATTG 57.523 36.000 0.00 0.00 40.54 1.90
2385 4027 8.559536 CATTTTGCTCCGTATGTAGTTCATATT 58.440 33.333 0.00 0.00 40.54 1.28
2386 4028 7.931407 TCATTTTGCTCCGTATGTAGTTCATAT 59.069 33.333 0.00 0.00 40.54 1.78
2387 4029 7.269316 TCATTTTGCTCCGTATGTAGTTCATA 58.731 34.615 0.00 0.00 37.91 2.15
2389 4031 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
2390 4032 5.581085 ACTCATTTTGCTCCGTATGTAGTTC 59.419 40.000 0.00 0.00 0.00 3.01
2391 4033 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
2392 4034 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2393 4035 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2394 4036 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2395 4037 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2397 4039 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2398 4040 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2399 4041 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2401 4043 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2402 4044 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2433 4075 9.339850 GGACTACATACGGATGTATATAGATGT 57.660 37.037 20.64 12.85 45.42 3.06
2434 4076 9.338622 TGGACTACATACGGATGTATATAGATG 57.661 37.037 20.64 9.79 45.42 2.90
2435 4077 9.916360 TTGGACTACATACGGATGTATATAGAT 57.084 33.333 20.64 3.17 45.42 1.98
2436 4078 9.916360 ATTGGACTACATACGGATGTATATAGA 57.084 33.333 20.64 8.10 45.42 1.98
2441 4083 9.031537 TCAATATTGGACTACATACGGATGTAT 57.968 33.333 20.64 11.04 45.42 2.29
2442 4084 8.411991 TCAATATTGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
2444 4086 8.601845 TTTCAATATTGGACTACATACGGATG 57.398 34.615 15.36 5.94 39.16 3.51
2445 4087 9.436957 GATTTCAATATTGGACTACATACGGAT 57.563 33.333 15.36 0.00 0.00 4.18
2446 4088 8.647796 AGATTTCAATATTGGACTACATACGGA 58.352 33.333 15.36 0.00 0.00 4.69
2447 4089 8.833231 AGATTTCAATATTGGACTACATACGG 57.167 34.615 15.36 0.00 0.00 4.02
2448 4090 9.698309 AGAGATTTCAATATTGGACTACATACG 57.302 33.333 15.36 0.00 0.00 3.06
2479 4121 9.453830 ACTCCCTCTGTTCCTAAATATAATTCT 57.546 33.333 0.00 0.00 0.00 2.40
2482 4124 9.900112 ACTACTCCCTCTGTTCCTAAATATAAT 57.100 33.333 0.00 0.00 0.00 1.28
2489 4131 5.525454 TGTACTACTCCCTCTGTTCCTAA 57.475 43.478 0.00 0.00 0.00 2.69
2491 4133 4.611564 ATGTACTACTCCCTCTGTTCCT 57.388 45.455 0.00 0.00 0.00 3.36
2497 4139 6.282568 AGTCCATAATGTACTACTCCCTCT 57.717 41.667 0.00 0.00 0.00 3.69
2503 4145 8.361139 GCAGTTCATAGTCCATAATGTACTACT 58.639 37.037 0.00 0.00 33.56 2.57
2504 4146 8.361139 AGCAGTTCATAGTCCATAATGTACTAC 58.639 37.037 0.00 0.00 33.56 2.73
2534 4176 3.947196 GCAACATCATGTGATAGAACCCA 59.053 43.478 0.00 0.00 32.63 4.51
2550 4192 7.123997 TGGTAGGTTCATATTTCATTGCAACAT 59.876 33.333 0.00 0.00 0.00 2.71
2557 4199 7.696992 AACGTTGGTAGGTTCATATTTCATT 57.303 32.000 0.00 0.00 0.00 2.57
2624 4266 6.237901 ACACACATAGAACCACAACATGTAT 58.762 36.000 0.00 0.00 0.00 2.29
2656 4300 6.643770 GCTCCATTTTGTATTGCTTCCATATG 59.356 38.462 0.00 0.00 0.00 1.78
2694 4338 9.705290 ACTTCGTTGCTCCATTTTTATTTTTAT 57.295 25.926 0.00 0.00 0.00 1.40
2697 4341 6.073819 GCACTTCGTTGCTCCATTTTTATTTT 60.074 34.615 0.12 0.00 39.59 1.82
2698 4342 5.405269 GCACTTCGTTGCTCCATTTTTATTT 59.595 36.000 0.12 0.00 39.59 1.40
2699 4343 4.923281 GCACTTCGTTGCTCCATTTTTATT 59.077 37.500 0.12 0.00 39.59 1.40
2700 4344 4.485163 GCACTTCGTTGCTCCATTTTTAT 58.515 39.130 0.12 0.00 39.59 1.40
2702 4346 2.545742 GGCACTTCGTTGCTCCATTTTT 60.546 45.455 6.42 0.00 42.56 1.94
2704 4348 0.598065 GGCACTTCGTTGCTCCATTT 59.402 50.000 6.42 0.00 42.56 2.32
2705 4349 0.250901 AGGCACTTCGTTGCTCCATT 60.251 50.000 6.42 0.00 42.56 3.16
2706 4350 0.674895 GAGGCACTTCGTTGCTCCAT 60.675 55.000 6.42 0.00 41.55 3.41
2708 4352 0.603975 AAGAGGCACTTCGTTGCTCC 60.604 55.000 6.42 0.00 41.55 4.70
2709 4353 0.793250 GAAGAGGCACTTCGTTGCTC 59.207 55.000 8.90 0.00 44.15 4.26
2710 4354 2.919971 GAAGAGGCACTTCGTTGCT 58.080 52.632 8.90 0.00 44.15 3.91
2717 4361 4.564406 CCATACTCAACTGAAGAGGCACTT 60.564 45.833 0.00 0.00 41.55 3.16
2719 4363 3.265791 CCATACTCAACTGAAGAGGCAC 58.734 50.000 0.00 0.00 37.43 5.01
2772 4416 2.037121 GCAGGGTGGCAAGTAACATTTT 59.963 45.455 0.00 0.00 0.00 1.82
2956 4600 5.730550 TCACATTTGTAAGTTATCCGAGCT 58.269 37.500 0.00 0.00 0.00 4.09
2963 4607 9.410556 GAAACAGCAATCACATTTGTAAGTTAT 57.589 29.630 0.00 0.00 0.00 1.89
3038 4682 5.055144 TGTAAGATGCAGATGAAGATGCTC 58.945 41.667 0.00 0.00 42.98 4.26
3086 4730 6.591750 TTTCTTTACAGAGGGAGTACTGAG 57.408 41.667 0.00 0.00 37.54 3.35
3092 4736 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
3093 4737 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
3094 4738 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
3095 4739 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
3096 4740 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
3097 4741 9.907576 CAAACGCTCTTATATTTCTTTACAGAG 57.092 33.333 0.00 0.00 0.00 3.35
3098 4742 8.879759 CCAAACGCTCTTATATTTCTTTACAGA 58.120 33.333 0.00 0.00 0.00 3.41
3099 4743 8.879759 TCCAAACGCTCTTATATTTCTTTACAG 58.120 33.333 0.00 0.00 0.00 2.74
3100 4744 8.780846 TCCAAACGCTCTTATATTTCTTTACA 57.219 30.769 0.00 0.00 0.00 2.41
3101 4745 9.865484 GATCCAAACGCTCTTATATTTCTTTAC 57.135 33.333 0.00 0.00 0.00 2.01
3102 4746 9.607988 TGATCCAAACGCTCTTATATTTCTTTA 57.392 29.630 0.00 0.00 0.00 1.85
3103 4747 8.398665 GTGATCCAAACGCTCTTATATTTCTTT 58.601 33.333 0.00 0.00 0.00 2.52
3104 4748 7.770897 AGTGATCCAAACGCTCTTATATTTCTT 59.229 33.333 0.00 0.00 0.00 2.52
3105 4749 7.275920 AGTGATCCAAACGCTCTTATATTTCT 58.724 34.615 0.00 0.00 0.00 2.52
3106 4750 7.484035 AGTGATCCAAACGCTCTTATATTTC 57.516 36.000 0.00 0.00 0.00 2.17
3107 4751 8.204836 AGTAGTGATCCAAACGCTCTTATATTT 58.795 33.333 0.00 0.00 0.00 1.40
3108 4752 7.727181 AGTAGTGATCCAAACGCTCTTATATT 58.273 34.615 0.00 0.00 0.00 1.28
3109 4753 7.291411 AGTAGTGATCCAAACGCTCTTATAT 57.709 36.000 0.00 0.00 0.00 0.86
3110 4754 6.710597 AGTAGTGATCCAAACGCTCTTATA 57.289 37.500 0.00 0.00 0.00 0.98
3111 4755 5.599999 AGTAGTGATCCAAACGCTCTTAT 57.400 39.130 0.00 0.00 0.00 1.73
3112 4756 5.401531 AAGTAGTGATCCAAACGCTCTTA 57.598 39.130 0.00 0.00 0.00 2.10
3113 4757 3.963428 AGTAGTGATCCAAACGCTCTT 57.037 42.857 0.00 0.00 0.00 2.85
3114 4758 3.963428 AAGTAGTGATCCAAACGCTCT 57.037 42.857 0.00 0.00 0.00 4.09
3115 4759 5.169295 ACTAAAGTAGTGATCCAAACGCTC 58.831 41.667 0.00 0.00 37.69 5.03
3116 4760 5.148651 ACTAAAGTAGTGATCCAAACGCT 57.851 39.130 0.00 0.00 37.69 5.07
3128 4772 5.047235 AGAGCGTTTGGATCACTAAAGTAGT 60.047 40.000 0.00 0.00 40.28 2.73
3129 4773 5.411781 AGAGCGTTTGGATCACTAAAGTAG 58.588 41.667 0.00 0.00 32.03 2.57
3130 4774 5.401531 AGAGCGTTTGGATCACTAAAGTA 57.598 39.130 0.00 0.00 32.03 2.24
3131 4775 4.273148 AGAGCGTTTGGATCACTAAAGT 57.727 40.909 0.00 0.00 32.03 2.66
3132 4776 6.910536 ATAAGAGCGTTTGGATCACTAAAG 57.089 37.500 0.00 0.00 32.03 1.85
3133 4777 8.958119 AATATAAGAGCGTTTGGATCACTAAA 57.042 30.769 0.00 0.00 32.03 1.85
3134 4778 8.958119 AAATATAAGAGCGTTTGGATCACTAA 57.042 30.769 0.00 0.00 32.03 2.24
3135 4779 8.421784 AGAAATATAAGAGCGTTTGGATCACTA 58.578 33.333 0.00 0.00 32.03 2.74
3136 4780 7.275920 AGAAATATAAGAGCGTTTGGATCACT 58.724 34.615 0.00 0.00 32.03 3.41
3137 4781 7.484035 AGAAATATAAGAGCGTTTGGATCAC 57.516 36.000 0.00 0.00 32.03 3.06
3138 4782 8.506168 AAAGAAATATAAGAGCGTTTGGATCA 57.494 30.769 0.00 0.00 32.03 2.92
3141 4785 8.836413 CCATAAAGAAATATAAGAGCGTTTGGA 58.164 33.333 0.00 0.00 0.00 3.53
3142 4786 8.836413 TCCATAAAGAAATATAAGAGCGTTTGG 58.164 33.333 0.00 0.00 0.00 3.28
3143 4787 9.869844 CTCCATAAAGAAATATAAGAGCGTTTG 57.130 33.333 0.00 0.00 0.00 2.93
3144 4788 9.057089 CCTCCATAAAGAAATATAAGAGCGTTT 57.943 33.333 0.00 0.00 0.00 3.60
3145 4789 7.661847 CCCTCCATAAAGAAATATAAGAGCGTT 59.338 37.037 0.00 0.00 0.00 4.84
3146 4790 7.016268 TCCCTCCATAAAGAAATATAAGAGCGT 59.984 37.037 0.00 0.00 0.00 5.07
3147 4791 7.386851 TCCCTCCATAAAGAAATATAAGAGCG 58.613 38.462 0.00 0.00 0.00 5.03
3148 4792 8.379331 ACTCCCTCCATAAAGAAATATAAGAGC 58.621 37.037 0.00 0.00 0.00 4.09
3159 4803 8.648693 GCTTAATAAGTACTCCCTCCATAAAGA 58.351 37.037 0.00 0.00 0.00 2.52
3160 4804 8.429641 TGCTTAATAAGTACTCCCTCCATAAAG 58.570 37.037 0.00 0.00 0.00 1.85
3161 4805 8.326765 TGCTTAATAAGTACTCCCTCCATAAA 57.673 34.615 0.00 0.00 0.00 1.40
3162 4806 7.924358 TGCTTAATAAGTACTCCCTCCATAA 57.076 36.000 0.00 0.00 0.00 1.90
3163 4807 7.924358 TTGCTTAATAAGTACTCCCTCCATA 57.076 36.000 0.00 0.00 0.00 2.74
3164 4808 6.824958 TTGCTTAATAAGTACTCCCTCCAT 57.175 37.500 0.00 0.00 0.00 3.41
3165 4809 6.630203 TTTGCTTAATAAGTACTCCCTCCA 57.370 37.500 0.00 0.00 0.00 3.86
3166 4810 7.556635 ACAATTTGCTTAATAAGTACTCCCTCC 59.443 37.037 0.00 0.00 0.00 4.30
3167 4811 8.398665 CACAATTTGCTTAATAAGTACTCCCTC 58.601 37.037 0.00 0.00 0.00 4.30
3168 4812 7.888546 ACACAATTTGCTTAATAAGTACTCCCT 59.111 33.333 0.00 0.00 0.00 4.20
3169 4813 8.051901 ACACAATTTGCTTAATAAGTACTCCC 57.948 34.615 0.00 0.00 0.00 4.30
3170 4814 9.556030 GAACACAATTTGCTTAATAAGTACTCC 57.444 33.333 0.00 0.00 0.00 3.85
3188 4832 9.199982 GAAAACATCTCATCAAATGAACACAAT 57.800 29.630 0.00 0.00 39.11 2.71
3210 4854 3.788227 TCTAGCTGCAAGGGAAGAAAA 57.212 42.857 1.02 0.00 0.00 2.29
3270 4914 7.949434 AGAGAAGATTCTGTGCTTTTTGAAAT 58.051 30.769 0.00 0.00 37.73 2.17
3303 4947 3.243201 GGCCATCCTTTTCTTTCATAGCG 60.243 47.826 0.00 0.00 0.00 4.26
3312 4956 0.609131 CACGGTGGCCATCCTTTTCT 60.609 55.000 9.72 0.00 0.00 2.52
3336 4980 3.181480 CCGTTCTGAGGGATTCTCTCTTC 60.181 52.174 14.54 2.42 42.86 2.87
3348 4992 2.933495 TGAATCGTACCGTTCTGAGG 57.067 50.000 6.48 0.00 0.00 3.86
3369 5013 4.932799 CGTGAATTTGGAGTATACACCACA 59.067 41.667 20.17 15.04 36.34 4.17
3380 5024 5.376854 AAAAGGATGTCGTGAATTTGGAG 57.623 39.130 0.00 0.00 0.00 3.86
3381 5025 6.001460 ACTAAAAGGATGTCGTGAATTTGGA 58.999 36.000 0.00 0.00 0.00 3.53
3422 5067 0.907486 CCCTGAACAGATGCAGAGGA 59.093 55.000 3.19 0.00 34.06 3.71
3519 5164 1.745141 GCTCATCGGGCTCATCAAGTT 60.745 52.381 0.00 0.00 0.00 2.66
3535 5180 5.221106 CCAGTCTGATTTCTTTTGTTGCTCA 60.221 40.000 0.00 0.00 0.00 4.26
3539 5184 4.935702 TGCCAGTCTGATTTCTTTTGTTG 58.064 39.130 0.00 0.00 0.00 3.33
3575 5220 1.732259 GTGCCATACAACAGGAGAACG 59.268 52.381 0.00 0.00 0.00 3.95
3597 5242 2.569404 GGATCTGTCTGGAACCACTTCT 59.431 50.000 0.00 0.00 0.00 2.85
3638 5283 0.593128 GTGCAACCCACACATGACTC 59.407 55.000 0.00 0.00 44.06 3.36
3659 6735 2.363306 ACAACATCAACCCAGCTTCA 57.637 45.000 0.00 0.00 0.00 3.02
3669 6745 1.818060 GCCTGCCACATACAACATCAA 59.182 47.619 0.00 0.00 0.00 2.57
3683 6759 0.823356 TCTGAAACCACAAGCCTGCC 60.823 55.000 0.00 0.00 0.00 4.85
3739 6815 5.089396 TGACATGTAACAACACAACATCG 57.911 39.130 0.00 0.00 31.60 3.84
3791 6868 9.754382 CTTTTGATAAGCCACATATTTAATGCT 57.246 29.630 0.00 0.00 0.00 3.79
3792 6869 8.490355 GCTTTTGATAAGCCACATATTTAATGC 58.510 33.333 0.00 0.00 37.30 3.56
3793 6870 9.531942 TGCTTTTGATAAGCCACATATTTAATG 57.468 29.630 5.21 0.00 42.36 1.90
3817 6894 1.734163 ATTGTGTTACCGGCTAGTGC 58.266 50.000 0.00 0.00 38.76 4.40
3854 6931 7.105241 AGAAGAGGCATTGTTTTATCATTCC 57.895 36.000 0.00 0.00 0.00 3.01
3900 6980 4.528596 GTGCATACTATATGACCTGGACCT 59.471 45.833 0.00 0.00 0.00 3.85
4062 7470 8.927675 TGGTACACAACTATAGGAACAAAAAT 57.072 30.769 4.43 0.00 0.00 1.82
4147 7585 7.703328 TCAACATTTAGAAAGTCTTGGACAAC 58.297 34.615 0.52 0.00 34.60 3.32
4240 7678 5.703592 TGTGAACATGTTGACCTGTATAACC 59.296 40.000 22.90 2.38 0.00 2.85
4291 7729 8.208718 TGTATTTTGGTGTCTATAGCACATTC 57.791 34.615 21.15 12.02 38.51 2.67
4292 7730 8.752005 ATGTATTTTGGTGTCTATAGCACATT 57.248 30.769 21.15 9.11 38.51 2.71
4294 7732 8.574251 AAATGTATTTTGGTGTCTATAGCACA 57.426 30.769 21.15 12.68 38.51 4.57
4359 7798 7.502120 ACTATGTAATGCTGGAAATTGCTAG 57.498 36.000 0.00 0.00 0.00 3.42
4360 7799 7.555914 TCAACTATGTAATGCTGGAAATTGCTA 59.444 33.333 0.00 0.00 0.00 3.49
4361 7800 6.377996 TCAACTATGTAATGCTGGAAATTGCT 59.622 34.615 0.00 0.00 0.00 3.91
4388 7827 9.265901 CAGTTCCGAAATCAGAATAATATGAGT 57.734 33.333 0.00 0.00 28.76 3.41
4428 7867 3.002656 CCTCACGAAGCAATGCGATATTT 59.997 43.478 0.00 0.00 0.00 1.40
4579 8020 5.291971 ACAAAGCAAGATAAAAAGGCACAG 58.708 37.500 0.00 0.00 0.00 3.66
4592 8033 5.106038 CCAGCTGATATCAAACAAAGCAAGA 60.106 40.000 17.39 0.00 33.08 3.02
4650 8091 3.254411 TGTCAAAGTTGCAAGTGTTGTGA 59.746 39.130 7.73 6.81 0.00 3.58
4685 8126 0.597377 GCCAACAACAAAAGGGCGAG 60.597 55.000 0.00 0.00 34.56 5.03
4789 8231 2.573340 CACGCAGGGGAAAATGCC 59.427 61.111 0.00 0.00 39.30 4.40
4790 8232 1.815817 AACCACGCAGGGGAAAATGC 61.816 55.000 3.78 0.00 43.89 3.56
4791 8233 0.038343 CAACCACGCAGGGGAAAATG 60.038 55.000 3.78 0.00 43.89 2.32
4792 8234 1.815817 GCAACCACGCAGGGGAAAAT 61.816 55.000 3.78 0.00 43.89 1.82
4793 8235 2.494530 GCAACCACGCAGGGGAAAA 61.495 57.895 3.78 0.00 43.89 2.29
4794 8236 2.909965 GCAACCACGCAGGGGAAA 60.910 61.111 3.78 0.00 43.89 3.13
4795 8237 3.505790 ATGCAACCACGCAGGGGAA 62.506 57.895 3.78 0.00 46.99 3.97
4796 8238 3.965258 ATGCAACCACGCAGGGGA 61.965 61.111 3.78 0.00 46.99 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.