Multiple sequence alignment - TraesCS2A01G454400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G454400 chr2A 100.000 2231 0 0 1 2231 703345045 703347275 0.000000e+00 4120.0
1 TraesCS2A01G454400 chr2A 97.685 432 7 2 1740 2169 335826844 335826414 0.000000e+00 739.0
2 TraesCS2A01G454400 chr2A 90.845 426 32 5 780 1200 703207466 703207889 4.160000e-157 564.0
3 TraesCS2A01G454400 chr2A 78.195 399 36 20 1353 1738 703337956 703338316 8.070000e-50 207.0
4 TraesCS2A01G454400 chr2A 85.714 91 7 5 420 509 703116481 703116566 8.480000e-15 91.6
5 TraesCS2A01G454400 chr2A 85.227 88 7 4 420 506 703122112 703122194 3.950000e-13 86.1
6 TraesCS2A01G454400 chr2D 89.543 985 81 11 775 1738 562845196 562846179 0.000000e+00 1229.0
7 TraesCS2A01G454400 chr2D 86.198 1123 84 26 649 1738 562839383 562840467 0.000000e+00 1149.0
8 TraesCS2A01G454400 chr2D 88.343 712 43 9 649 1334 562807598 562808295 0.000000e+00 819.0
9 TraesCS2A01G454400 chr2D 97.674 430 7 2 1740 2169 334226482 334226056 0.000000e+00 736.0
10 TraesCS2A01G454400 chr2D 95.392 434 16 2 1740 2169 628286236 628285803 0.000000e+00 688.0
11 TraesCS2A01G454400 chr2D 82.577 815 96 24 881 1672 562587885 562588676 0.000000e+00 676.0
12 TraesCS2A01G454400 chr2D 82.194 775 89 28 780 1532 562684848 562685595 2.430000e-174 621.0
13 TraesCS2A01G454400 chr2D 80.797 276 31 14 215 478 562683877 562684142 1.750000e-46 196.0
14 TraesCS2A01G454400 chr2D 84.507 213 12 6 215 407 562784629 562784840 8.130000e-45 191.0
15 TraesCS2A01G454400 chr2D 84.021 194 18 9 215 407 562838807 562838988 8.190000e-40 174.0
16 TraesCS2A01G454400 chr2D 93.220 59 3 1 591 649 562839195 562839252 3.950000e-13 86.1
17 TraesCS2A01G454400 chr2D 89.552 67 1 2 2171 2231 562846183 562846249 1.840000e-11 80.5
18 TraesCS2A01G454400 chr2D 100.000 42 0 0 51 92 562842593 562842634 6.610000e-11 78.7
19 TraesCS2A01G454400 chr2B 89.378 659 36 5 652 1298 672776432 672775796 0.000000e+00 798.0
20 TraesCS2A01G454400 chr2B 91.572 439 25 4 799 1231 672668538 672668970 1.470000e-166 595.0
21 TraesCS2A01G454400 chr2B 81.472 788 80 35 777 1531 673050760 673051514 8.880000e-164 586.0
22 TraesCS2A01G454400 chr2B 92.424 396 21 2 903 1298 672860562 672860948 6.960000e-155 556.0
23 TraesCS2A01G454400 chr2B 76.923 390 45 23 49 407 673001624 673001999 1.760000e-41 180.0
24 TraesCS2A01G454400 chr2B 80.687 233 14 9 223 425 672645349 672645580 3.840000e-33 152.0
25 TraesCS2A01G454400 chr2B 84.247 146 9 5 223 356 672798105 672797962 1.800000e-26 130.0
26 TraesCS2A01G454400 chr2B 97.059 68 2 0 708 775 673050646 673050713 5.030000e-22 115.0
27 TraesCS2A01G454400 chr2B 87.209 86 6 2 424 509 672828724 672828644 2.360000e-15 93.5
28 TraesCS2A01G454400 chr2B 92.727 55 4 0 223 277 672665980 672666034 1.840000e-11 80.5
29 TraesCS2A01G454400 chrUn 98.140 430 8 0 1740 2169 404958800 404958371 0.000000e+00 750.0
30 TraesCS2A01G454400 chrUn 95.814 430 16 1 1740 2169 317472626 317473053 0.000000e+00 693.0
31 TraesCS2A01G454400 chr3B 97.442 430 10 1 1740 2169 201507140 201506712 0.000000e+00 732.0
32 TraesCS2A01G454400 chr3B 93.333 60 3 1 2108 2166 403112947 403113006 1.100000e-13 87.9
33 TraesCS2A01G454400 chr1D 96.056 431 16 1 1740 2169 394179477 394179047 0.000000e+00 701.0
34 TraesCS2A01G454400 chr6D 95.581 430 17 1 1740 2169 431400588 431400161 0.000000e+00 688.0
35 TraesCS2A01G454400 chr7D 95.864 411 14 1 1759 2169 88606128 88605721 0.000000e+00 662.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G454400 chr2A 703345045 703347275 2230 False 4120.000000 4120 100.000000 1 2231 1 chr2A.!!$F5 2230
1 TraesCS2A01G454400 chr2D 562807598 562808295 697 False 819.000000 819 88.343000 649 1334 1 chr2D.!!$F3 685
2 TraesCS2A01G454400 chr2D 562587885 562588676 791 False 676.000000 676 82.577000 881 1672 1 chr2D.!!$F1 791
3 TraesCS2A01G454400 chr2D 562838807 562846249 7442 False 466.216667 1229 90.422333 51 2231 6 chr2D.!!$F5 2180
4 TraesCS2A01G454400 chr2D 562683877 562685595 1718 False 408.500000 621 81.495500 215 1532 2 chr2D.!!$F4 1317
5 TraesCS2A01G454400 chr2B 672775796 672776432 636 True 798.000000 798 89.378000 652 1298 1 chr2B.!!$R1 646
6 TraesCS2A01G454400 chr2B 673050646 673051514 868 False 350.500000 586 89.265500 708 1531 2 chr2B.!!$F5 823
7 TraesCS2A01G454400 chr2B 672665980 672668970 2990 False 337.750000 595 92.149500 223 1231 2 chr2B.!!$F4 1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 8903 0.033504 TTCTCCACACAACTCGCTCC 59.966 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 9952 1.003118 TGGCTTCAACAAGATACGCCT 59.997 47.619 0.0 0.0 36.19 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.387091 ACCGCCCGTGAGTATGCA 61.387 61.111 0.00 0.00 0.00 3.96
18 19 2.586079 CCGCCCGTGAGTATGCAG 60.586 66.667 0.00 0.00 0.00 4.41
19 20 3.264897 CGCCCGTGAGTATGCAGC 61.265 66.667 0.00 0.00 0.00 5.25
20 21 2.125147 GCCCGTGAGTATGCAGCA 60.125 61.111 0.00 0.00 0.00 4.41
21 22 1.745115 GCCCGTGAGTATGCAGCAA 60.745 57.895 0.00 0.00 0.00 3.91
22 23 1.982073 GCCCGTGAGTATGCAGCAAC 61.982 60.000 0.00 0.00 0.00 4.17
23 24 0.673333 CCCGTGAGTATGCAGCAACA 60.673 55.000 0.00 0.00 0.00 3.33
24 25 0.723414 CCGTGAGTATGCAGCAACAG 59.277 55.000 0.00 0.00 0.00 3.16
25 26 0.095935 CGTGAGTATGCAGCAACAGC 59.904 55.000 0.00 0.00 0.00 4.40
26 27 1.446907 GTGAGTATGCAGCAACAGCT 58.553 50.000 0.00 0.00 39.75 4.24
27 28 2.621338 GTGAGTATGCAGCAACAGCTA 58.379 47.619 0.00 0.00 36.70 3.32
28 29 3.201290 GTGAGTATGCAGCAACAGCTAT 58.799 45.455 0.00 0.00 36.70 2.97
29 30 3.247173 GTGAGTATGCAGCAACAGCTATC 59.753 47.826 0.00 0.00 36.70 2.08
30 31 2.474359 GAGTATGCAGCAACAGCTATCG 59.526 50.000 0.00 0.00 36.70 2.92
31 32 2.159043 AGTATGCAGCAACAGCTATCGT 60.159 45.455 0.00 0.00 36.70 3.73
32 33 1.012086 ATGCAGCAACAGCTATCGTG 58.988 50.000 0.00 0.00 36.70 4.35
33 34 1.061570 GCAGCAACAGCTATCGTGC 59.938 57.895 0.00 0.00 36.70 5.34
34 35 1.638388 GCAGCAACAGCTATCGTGCA 61.638 55.000 11.31 0.00 36.70 4.57
35 36 0.095935 CAGCAACAGCTATCGTGCAC 59.904 55.000 6.82 6.82 36.70 4.57
36 37 1.059369 GCAACAGCTATCGTGCACG 59.941 57.895 32.76 32.76 41.45 5.34
37 38 1.709760 CAACAGCTATCGTGCACGG 59.290 57.895 36.41 22.72 40.29 4.94
38 39 1.014044 CAACAGCTATCGTGCACGGT 61.014 55.000 36.41 33.32 40.29 4.83
39 40 0.736325 AACAGCTATCGTGCACGGTC 60.736 55.000 36.41 20.47 40.29 4.79
40 41 1.139734 CAGCTATCGTGCACGGTCT 59.860 57.895 36.41 22.44 40.29 3.85
41 42 0.867753 CAGCTATCGTGCACGGTCTC 60.868 60.000 36.41 24.42 40.29 3.36
42 43 1.032657 AGCTATCGTGCACGGTCTCT 61.033 55.000 36.41 26.12 40.29 3.10
43 44 0.179134 GCTATCGTGCACGGTCTCTT 60.179 55.000 36.41 17.53 40.29 2.85
44 45 1.736032 GCTATCGTGCACGGTCTCTTT 60.736 52.381 36.41 15.94 40.29 2.52
45 46 2.607187 CTATCGTGCACGGTCTCTTTT 58.393 47.619 36.41 14.69 40.29 2.27
46 47 1.148310 ATCGTGCACGGTCTCTTTTG 58.852 50.000 36.41 7.06 40.29 2.44
47 48 0.179094 TCGTGCACGGTCTCTTTTGT 60.179 50.000 36.41 0.00 40.29 2.83
48 49 0.655733 CGTGCACGGTCTCTTTTGTT 59.344 50.000 31.15 0.00 35.37 2.83
49 50 1.332904 CGTGCACGGTCTCTTTTGTTC 60.333 52.381 31.15 0.00 35.37 3.18
50 51 1.002792 GTGCACGGTCTCTTTTGTTCC 60.003 52.381 0.00 0.00 0.00 3.62
51 52 1.305201 GCACGGTCTCTTTTGTTCCA 58.695 50.000 0.00 0.00 0.00 3.53
52 53 1.002792 GCACGGTCTCTTTTGTTCCAC 60.003 52.381 0.00 0.00 0.00 4.02
53 54 2.285083 CACGGTCTCTTTTGTTCCACA 58.715 47.619 0.00 0.00 0.00 4.17
54 55 2.031683 CACGGTCTCTTTTGTTCCACAC 59.968 50.000 0.00 0.00 0.00 3.82
55 56 2.093128 ACGGTCTCTTTTGTTCCACACT 60.093 45.455 0.00 0.00 0.00 3.55
56 57 2.544267 CGGTCTCTTTTGTTCCACACTC 59.456 50.000 0.00 0.00 0.00 3.51
57 58 3.741388 CGGTCTCTTTTGTTCCACACTCT 60.741 47.826 0.00 0.00 0.00 3.24
58 59 3.561725 GGTCTCTTTTGTTCCACACTCTG 59.438 47.826 0.00 0.00 0.00 3.35
59 60 3.002759 GTCTCTTTTGTTCCACACTCTGC 59.997 47.826 0.00 0.00 0.00 4.26
60 61 2.945008 CTCTTTTGTTCCACACTCTGCA 59.055 45.455 0.00 0.00 0.00 4.41
61 62 2.945008 TCTTTTGTTCCACACTCTGCAG 59.055 45.455 7.63 7.63 0.00 4.41
62 63 1.024271 TTTGTTCCACACTCTGCAGC 58.976 50.000 9.47 0.00 0.00 5.25
63 64 0.819259 TTGTTCCACACTCTGCAGCC 60.819 55.000 9.47 0.00 0.00 4.85
64 65 1.227943 GTTCCACACTCTGCAGCCA 60.228 57.895 9.47 0.00 0.00 4.75
65 66 0.819259 GTTCCACACTCTGCAGCCAA 60.819 55.000 9.47 0.00 0.00 4.52
66 67 0.106769 TTCCACACTCTGCAGCCAAA 60.107 50.000 9.47 0.00 0.00 3.28
67 68 0.535780 TCCACACTCTGCAGCCAAAG 60.536 55.000 9.47 3.41 0.00 2.77
68 69 0.820891 CCACACTCTGCAGCCAAAGT 60.821 55.000 9.47 4.16 0.00 2.66
69 70 1.027357 CACACTCTGCAGCCAAAGTT 58.973 50.000 9.47 0.00 0.00 2.66
70 71 1.406539 CACACTCTGCAGCCAAAGTTT 59.593 47.619 9.47 0.00 0.00 2.66
71 72 1.406539 ACACTCTGCAGCCAAAGTTTG 59.593 47.619 9.47 8.73 0.00 2.93
72 73 1.406539 CACTCTGCAGCCAAAGTTTGT 59.593 47.619 9.47 0.00 0.00 2.83
73 74 2.102578 ACTCTGCAGCCAAAGTTTGTT 58.897 42.857 9.47 0.00 0.00 2.83
74 75 2.159198 ACTCTGCAGCCAAAGTTTGTTG 60.159 45.455 9.47 12.53 0.00 3.33
75 76 1.824230 TCTGCAGCCAAAGTTTGTTGT 59.176 42.857 9.47 0.00 0.00 3.32
76 77 1.928503 CTGCAGCCAAAGTTTGTTGTG 59.071 47.619 14.36 9.22 0.00 3.33
77 78 1.289276 GCAGCCAAAGTTTGTTGTGG 58.711 50.000 14.36 0.48 0.00 4.17
78 79 1.405391 GCAGCCAAAGTTTGTTGTGGT 60.405 47.619 14.36 2.04 33.43 4.16
79 80 2.539476 CAGCCAAAGTTTGTTGTGGTC 58.461 47.619 14.36 0.00 33.43 4.02
80 81 1.134175 AGCCAAAGTTTGTTGTGGTCG 59.866 47.619 14.36 0.00 33.43 4.79
81 82 1.801025 GCCAAAGTTTGTTGTGGTCGG 60.801 52.381 14.36 0.00 33.43 4.79
82 83 1.555477 CAAAGTTTGTTGTGGTCGGC 58.445 50.000 7.48 0.00 0.00 5.54
83 84 1.135257 CAAAGTTTGTTGTGGTCGGCA 60.135 47.619 7.48 0.00 0.00 5.69
84 85 0.738389 AAGTTTGTTGTGGTCGGCAG 59.262 50.000 0.00 0.00 0.00 4.85
85 86 1.299089 GTTTGTTGTGGTCGGCAGC 60.299 57.895 0.00 0.00 0.00 5.25
86 87 1.750780 TTTGTTGTGGTCGGCAGCA 60.751 52.632 0.00 0.00 0.00 4.41
91 92 2.740055 GTGGTCGGCAGCACTCAG 60.740 66.667 10.58 0.00 45.92 3.35
92 93 4.687215 TGGTCGGCAGCACTCAGC 62.687 66.667 0.00 0.00 46.19 4.26
122 123 4.200287 TGCGTGCGTGCATTAGAT 57.800 50.000 0.00 0.00 40.62 1.98
123 124 3.354131 TGCGTGCGTGCATTAGATA 57.646 47.368 0.00 0.00 40.62 1.98
124 125 1.208259 TGCGTGCGTGCATTAGATAG 58.792 50.000 0.00 0.00 40.62 2.08
125 126 1.209128 GCGTGCGTGCATTAGATAGT 58.791 50.000 0.00 0.00 34.15 2.12
126 127 1.190323 GCGTGCGTGCATTAGATAGTC 59.810 52.381 0.00 0.00 34.15 2.59
127 128 2.459934 CGTGCGTGCATTAGATAGTCA 58.540 47.619 0.00 0.00 0.00 3.41
128 129 2.469147 CGTGCGTGCATTAGATAGTCAG 59.531 50.000 0.00 0.00 0.00 3.51
129 130 3.448686 GTGCGTGCATTAGATAGTCAGT 58.551 45.455 0.00 0.00 0.00 3.41
130 131 3.243877 GTGCGTGCATTAGATAGTCAGTG 59.756 47.826 0.00 0.00 0.00 3.66
131 132 2.219674 GCGTGCATTAGATAGTCAGTGC 59.780 50.000 0.00 0.00 0.00 4.40
132 133 2.469147 CGTGCATTAGATAGTCAGTGCG 59.531 50.000 0.00 0.00 35.46 5.34
133 134 2.219674 GTGCATTAGATAGTCAGTGCGC 59.780 50.000 0.00 0.00 35.46 6.09
134 135 1.453524 GCATTAGATAGTCAGTGCGCG 59.546 52.381 0.00 0.00 0.00 6.86
135 136 1.453524 CATTAGATAGTCAGTGCGCGC 59.546 52.381 27.26 27.26 0.00 6.86
136 137 0.248907 TTAGATAGTCAGTGCGCGCC 60.249 55.000 30.77 19.97 0.00 6.53
137 138 1.381165 TAGATAGTCAGTGCGCGCCA 61.381 55.000 30.77 14.30 0.00 5.69
138 139 2.202797 ATAGTCAGTGCGCGCCAG 60.203 61.111 30.77 18.31 0.00 4.85
149 150 4.732106 GCGCCAGCGTTAGATACT 57.268 55.556 14.22 0.00 42.09 2.12
150 151 2.507643 GCGCCAGCGTTAGATACTC 58.492 57.895 14.22 0.00 42.09 2.59
151 152 0.940047 GCGCCAGCGTTAGATACTCC 60.940 60.000 14.22 0.00 42.09 3.85
152 153 0.318784 CGCCAGCGTTAGATACTCCC 60.319 60.000 3.35 0.00 34.35 4.30
153 154 0.750850 GCCAGCGTTAGATACTCCCA 59.249 55.000 0.00 0.00 0.00 4.37
154 155 1.138266 GCCAGCGTTAGATACTCCCAA 59.862 52.381 0.00 0.00 0.00 4.12
155 156 2.803492 GCCAGCGTTAGATACTCCCAAG 60.803 54.545 0.00 0.00 0.00 3.61
156 157 2.431057 CCAGCGTTAGATACTCCCAAGT 59.569 50.000 0.00 0.00 39.66 3.16
157 158 3.118738 CCAGCGTTAGATACTCCCAAGTT 60.119 47.826 0.00 0.00 36.92 2.66
158 159 4.504858 CAGCGTTAGATACTCCCAAGTTT 58.495 43.478 0.00 0.00 36.92 2.66
159 160 4.567159 CAGCGTTAGATACTCCCAAGTTTC 59.433 45.833 0.00 0.00 36.92 2.78
160 161 4.222145 AGCGTTAGATACTCCCAAGTTTCA 59.778 41.667 0.00 0.00 36.32 2.69
161 162 4.329256 GCGTTAGATACTCCCAAGTTTCAC 59.671 45.833 0.00 0.00 36.32 3.18
162 163 5.721232 CGTTAGATACTCCCAAGTTTCACT 58.279 41.667 0.00 0.00 36.32 3.41
163 164 5.805994 CGTTAGATACTCCCAAGTTTCACTC 59.194 44.000 0.00 0.00 36.32 3.51
164 165 4.457834 AGATACTCCCAAGTTTCACTCG 57.542 45.455 0.00 0.00 36.32 4.18
165 166 3.833070 AGATACTCCCAAGTTTCACTCGT 59.167 43.478 0.00 0.00 36.32 4.18
166 167 2.528041 ACTCCCAAGTTTCACTCGTC 57.472 50.000 0.00 0.00 28.74 4.20
167 168 2.040178 ACTCCCAAGTTTCACTCGTCT 58.960 47.619 0.00 0.00 28.74 4.18
168 169 2.036089 ACTCCCAAGTTTCACTCGTCTC 59.964 50.000 0.00 0.00 28.74 3.36
169 170 1.343465 TCCCAAGTTTCACTCGTCTCC 59.657 52.381 0.00 0.00 0.00 3.71
170 171 1.608283 CCCAAGTTTCACTCGTCTCCC 60.608 57.143 0.00 0.00 0.00 4.30
171 172 1.419374 CAAGTTTCACTCGTCTCCCG 58.581 55.000 0.00 0.00 38.13 5.14
172 173 0.317479 AAGTTTCACTCGTCTCCCGG 59.683 55.000 0.00 0.00 37.11 5.73
173 174 0.538977 AGTTTCACTCGTCTCCCGGA 60.539 55.000 0.73 0.00 37.11 5.14
174 175 0.109226 GTTTCACTCGTCTCCCGGAG 60.109 60.000 8.30 8.30 37.11 4.63
189 190 1.565305 CGGAGGAAGAGAAAGATGCG 58.435 55.000 0.00 0.00 0.00 4.73
190 191 1.804372 CGGAGGAAGAGAAAGATGCGG 60.804 57.143 0.00 0.00 0.00 5.69
191 192 1.482593 GGAGGAAGAGAAAGATGCGGA 59.517 52.381 0.00 0.00 0.00 5.54
192 193 2.545731 GAGGAAGAGAAAGATGCGGAC 58.454 52.381 0.00 0.00 0.00 4.79
193 194 1.208293 AGGAAGAGAAAGATGCGGACC 59.792 52.381 0.00 0.00 0.00 4.46
194 195 1.208293 GGAAGAGAAAGATGCGGACCT 59.792 52.381 0.00 0.00 0.00 3.85
195 196 2.355209 GGAAGAGAAAGATGCGGACCTT 60.355 50.000 0.00 0.00 0.00 3.50
196 197 2.682155 AGAGAAAGATGCGGACCTTC 57.318 50.000 0.00 0.00 0.00 3.46
197 198 2.183679 AGAGAAAGATGCGGACCTTCT 58.816 47.619 0.00 0.00 0.00 2.85
198 199 2.167487 AGAGAAAGATGCGGACCTTCTC 59.833 50.000 13.38 13.38 0.00 2.87
199 200 1.208293 AGAAAGATGCGGACCTTCTCC 59.792 52.381 0.00 0.00 35.33 3.71
200 201 0.253327 AAAGATGCGGACCTTCTCCC 59.747 55.000 0.00 0.00 35.21 4.30
209 210 3.388345 GGACCTTCTCCCGATGATTAC 57.612 52.381 0.00 0.00 31.83 1.89
210 211 2.288273 GGACCTTCTCCCGATGATTACG 60.288 54.545 0.00 0.00 31.83 3.18
211 212 2.361438 GACCTTCTCCCGATGATTACGT 59.639 50.000 0.00 0.00 0.00 3.57
212 213 2.361438 ACCTTCTCCCGATGATTACGTC 59.639 50.000 0.00 0.00 0.00 4.34
213 214 2.288273 CCTTCTCCCGATGATTACGTCC 60.288 54.545 0.00 0.00 0.00 4.79
214 215 0.949397 TCTCCCGATGATTACGTCCG 59.051 55.000 0.00 0.00 0.00 4.79
215 216 0.949397 CTCCCGATGATTACGTCCGA 59.051 55.000 0.00 0.00 0.00 4.55
216 217 1.335810 CTCCCGATGATTACGTCCGAA 59.664 52.381 0.00 0.00 0.00 4.30
217 218 1.750206 TCCCGATGATTACGTCCGAAA 59.250 47.619 0.00 0.00 0.00 3.46
218 219 1.856597 CCCGATGATTACGTCCGAAAC 59.143 52.381 0.00 0.00 0.00 2.78
345 358 1.087501 GATCCCTTCTCAACGGCAAC 58.912 55.000 0.00 0.00 0.00 4.17
346 359 0.322546 ATCCCTTCTCAACGGCAACC 60.323 55.000 0.00 0.00 0.00 3.77
357 370 4.712425 GGCAACCGCAGCTGCAAG 62.712 66.667 36.03 28.15 40.46 4.01
390 403 3.642778 AACGTGCACGATCCCCGAG 62.643 63.158 42.94 13.54 43.02 4.63
407 420 1.464997 CGAGCCAGCTAAACAAACCTC 59.535 52.381 0.00 0.00 0.00 3.85
408 421 2.784347 GAGCCAGCTAAACAAACCTCT 58.216 47.619 0.00 0.00 0.00 3.69
411 424 3.149981 GCCAGCTAAACAAACCTCTCTT 58.850 45.455 0.00 0.00 0.00 2.85
412 425 4.041691 AGCCAGCTAAACAAACCTCTCTTA 59.958 41.667 0.00 0.00 0.00 2.10
414 427 5.552178 CCAGCTAAACAAACCTCTCTTACT 58.448 41.667 0.00 0.00 0.00 2.24
415 428 5.998363 CCAGCTAAACAAACCTCTCTTACTT 59.002 40.000 0.00 0.00 0.00 2.24
416 429 7.159372 CCAGCTAAACAAACCTCTCTTACTTA 58.841 38.462 0.00 0.00 0.00 2.24
417 430 7.660208 CCAGCTAAACAAACCTCTCTTACTTAA 59.340 37.037 0.00 0.00 0.00 1.85
418 431 9.052759 CAGCTAAACAAACCTCTCTTACTTAAA 57.947 33.333 0.00 0.00 0.00 1.52
420 433 8.833493 GCTAAACAAACCTCTCTTACTTAAACA 58.167 33.333 0.00 0.00 0.00 2.83
479 533 2.532531 CACGGATTGCTTGTAGCTTG 57.467 50.000 0.00 0.00 42.97 4.01
482 536 2.028112 ACGGATTGCTTGTAGCTTGAGA 60.028 45.455 0.00 0.00 42.97 3.27
484 538 3.247173 CGGATTGCTTGTAGCTTGAGATC 59.753 47.826 0.00 0.00 42.97 2.75
486 540 2.299993 TGCTTGTAGCTTGAGATCGG 57.700 50.000 0.00 0.00 42.97 4.18
488 542 1.740380 GCTTGTAGCTTGAGATCGGCA 60.740 52.381 0.00 0.00 38.45 5.69
489 543 2.621338 CTTGTAGCTTGAGATCGGCAA 58.379 47.619 0.00 4.39 0.00 4.52
490 544 2.299993 TGTAGCTTGAGATCGGCAAG 57.700 50.000 20.38 20.38 44.22 4.01
494 548 3.149899 CTTGAGATCGGCAAGCTGT 57.850 52.632 15.28 0.00 36.66 4.40
509 563 3.584250 CTGTTGCACGCGCTTGAGG 62.584 63.158 19.16 0.00 39.64 3.86
554 1048 0.931662 CGTTCACAAGTTGCTGCTGC 60.932 55.000 8.89 8.89 40.20 5.25
575 1069 3.345808 GTGCGTGCACGGTCACAT 61.346 61.111 37.47 0.00 40.23 3.21
577 1071 2.738521 GCGTGCACGGTCACATCT 60.739 61.111 37.47 0.00 40.23 2.90
578 1072 2.730672 GCGTGCACGGTCACATCTC 61.731 63.158 37.47 15.93 40.23 2.75
579 1073 2.436539 CGTGCACGGTCACATCTCG 61.437 63.158 31.15 0.30 36.80 4.04
580 1074 1.372997 GTGCACGGTCACATCTCGT 60.373 57.895 0.00 0.00 36.97 4.18
585 1170 1.192312 CACGGTCACATCTCGTGTTTG 59.808 52.381 6.89 0.00 46.44 2.93
587 1172 1.455786 CGGTCACATCTCGTGTTTGTC 59.544 52.381 0.00 0.00 46.44 3.18
593 1178 4.219725 TCACATCTCGTGTTTGTCCATCTA 59.780 41.667 0.00 0.00 46.44 1.98
635 1220 4.333095 ACATACTCTAGTACAGTGCACGAG 59.667 45.833 12.01 12.22 32.72 4.18
645 1230 0.957395 AGTGCACGAGAGGCATTTGG 60.957 55.000 12.01 0.00 44.11 3.28
646 1231 1.073025 TGCACGAGAGGCATTTGGT 59.927 52.632 0.00 0.00 36.11 3.67
647 1232 1.236616 TGCACGAGAGGCATTTGGTG 61.237 55.000 0.00 0.00 36.11 4.17
674 1557 8.273780 AGCCTTCAGAAAATATCACAACTTAG 57.726 34.615 0.00 0.00 0.00 2.18
712 7237 3.064545 CCAGAGCGATGTTTCCTTTCATC 59.935 47.826 0.00 0.00 37.61 2.92
778 7348 2.165030 TCGTTTTCCTCTCGGTGGTATC 59.835 50.000 0.00 0.00 0.00 2.24
841 8888 0.544223 GAGCCTTCCCCTCCTTTCTC 59.456 60.000 0.00 0.00 0.00 2.87
856 8903 0.033504 TTCTCCACACAACTCGCTCC 59.966 55.000 0.00 0.00 0.00 4.70
868 8915 0.106719 CTCGCTCCCTCTCCTCTTCT 60.107 60.000 0.00 0.00 0.00 2.85
932 9016 2.171659 TGCTCCAAAGTCACCTACACAA 59.828 45.455 0.00 0.00 0.00 3.33
938 9030 6.358178 TCCAAAGTCACCTACACAAACATAA 58.642 36.000 0.00 0.00 0.00 1.90
975 9067 1.134551 GCCTGCTCCTTCTTCTTCGAT 60.135 52.381 0.00 0.00 0.00 3.59
1274 9372 1.679153 TGGCCGAGGAAAGTTTTGTTC 59.321 47.619 0.00 0.00 0.00 3.18
1286 9384 4.568152 AGTTTTGTTCGAATGGACAAGG 57.432 40.909 0.00 0.00 0.00 3.61
1304 9402 6.072783 GGACAAGGTCTGAATTCTGAAGAAAG 60.073 42.308 15.70 8.46 33.65 2.62
1327 9452 6.233434 AGCAACATCTGTATTCTGAAGAACA 58.767 36.000 7.78 7.78 36.80 3.18
1334 9459 7.625828 TCTGTATTCTGAAGAACAGTCGATA 57.374 36.000 23.78 10.51 45.86 2.92
1338 9463 8.304596 TGTATTCTGAAGAACAGTCGATACTTT 58.695 33.333 4.72 0.00 45.86 2.66
1345 9470 5.471257 AGAACAGTCGATACTTTCTGGTTC 58.529 41.667 3.84 0.00 34.56 3.62
1349 9474 1.134907 TCGATACTTTCTGGTTCGGCC 60.135 52.381 0.00 0.00 37.90 6.13
1350 9475 1.404986 CGATACTTTCTGGTTCGGCCA 60.405 52.381 2.24 0.06 46.95 5.36
1360 9494 2.989253 TTCGGCCAGCGTCTCTCA 60.989 61.111 2.24 0.00 0.00 3.27
1361 9495 2.570284 TTCGGCCAGCGTCTCTCAA 61.570 57.895 2.24 0.00 0.00 3.02
1382 9516 1.302033 CGGTGCTCTTGCCTGAACT 60.302 57.895 0.00 0.00 38.71 3.01
1390 9524 0.676151 CTTGCCTGAACTGGAGGAGC 60.676 60.000 2.01 0.00 31.48 4.70
1397 9531 2.364970 CTGAACTGGAGGAGCTATCAGG 59.635 54.545 0.00 0.00 31.31 3.86
1401 9535 1.365633 GGAGGAGCTATCAGGTGCG 59.634 63.158 0.00 0.00 39.13 5.34
1448 9592 2.036256 GGGCAGCATCAGGTGGTT 59.964 61.111 0.00 0.00 43.34 3.67
1467 9630 1.378762 GGTGCCTGTAGCTTCCCAA 59.621 57.895 0.00 0.00 44.23 4.12
1487 9650 0.968901 ATGTGTCCATGGCAAGCTGG 60.969 55.000 6.96 0.00 0.00 4.85
1539 9703 4.373116 TTCTCGGTCGGCCTGTGC 62.373 66.667 3.66 0.00 0.00 4.57
1692 9860 2.030027 TCCCCTTGATGACTGACACT 57.970 50.000 0.00 0.00 0.00 3.55
1731 9899 6.414987 GTCGCTGTAAATAATTCAAGGCAATC 59.585 38.462 0.00 0.00 0.00 2.67
1744 9912 9.512588 AATTCAAGGCAATCGATATAGAAGATT 57.487 29.630 0.00 0.00 35.24 2.40
1745 9913 8.908786 TTCAAGGCAATCGATATAGAAGATTT 57.091 30.769 0.00 0.00 32.87 2.17
1746 9914 8.908786 TCAAGGCAATCGATATAGAAGATTTT 57.091 30.769 0.00 0.00 32.87 1.82
1747 9915 9.342308 TCAAGGCAATCGATATAGAAGATTTTT 57.658 29.630 0.00 0.00 32.87 1.94
1748 9916 9.604626 CAAGGCAATCGATATAGAAGATTTTTC 57.395 33.333 0.00 0.00 32.87 2.29
1749 9917 9.566432 AAGGCAATCGATATAGAAGATTTTTCT 57.434 29.630 0.00 0.00 32.87 2.52
1750 9918 9.566432 AGGCAATCGATATAGAAGATTTTTCTT 57.434 29.630 0.00 0.00 32.87 2.52
1788 9956 9.520204 AATTATTCAGTCAATTCAAATAAGGCG 57.480 29.630 0.00 0.00 0.00 5.52
1789 9957 5.957842 TTCAGTCAATTCAAATAAGGCGT 57.042 34.783 0.00 0.00 0.00 5.68
1790 9958 7.624360 ATTCAGTCAATTCAAATAAGGCGTA 57.376 32.000 0.00 0.00 0.00 4.42
1791 9959 7.624360 TTCAGTCAATTCAAATAAGGCGTAT 57.376 32.000 0.00 0.00 0.00 3.06
1792 9960 7.246674 TCAGTCAATTCAAATAAGGCGTATC 57.753 36.000 0.00 0.00 0.00 2.24
1793 9961 7.047891 TCAGTCAATTCAAATAAGGCGTATCT 58.952 34.615 0.00 0.00 0.00 1.98
1794 9962 7.552687 TCAGTCAATTCAAATAAGGCGTATCTT 59.447 33.333 0.00 0.00 0.00 2.40
1795 9963 7.641411 CAGTCAATTCAAATAAGGCGTATCTTG 59.359 37.037 0.00 2.15 0.00 3.02
1796 9964 7.336931 AGTCAATTCAAATAAGGCGTATCTTGT 59.663 33.333 0.00 0.00 0.00 3.16
1797 9965 7.968405 GTCAATTCAAATAAGGCGTATCTTGTT 59.032 33.333 0.00 0.00 31.01 2.83
1798 9966 7.967854 TCAATTCAAATAAGGCGTATCTTGTTG 59.032 33.333 0.00 0.00 30.39 3.33
1799 9967 7.624360 ATTCAAATAAGGCGTATCTTGTTGA 57.376 32.000 0.00 0.00 33.89 3.18
1800 9968 7.441890 TTCAAATAAGGCGTATCTTGTTGAA 57.558 32.000 11.45 11.45 38.40 2.69
1801 9969 7.072177 TCAAATAAGGCGTATCTTGTTGAAG 57.928 36.000 3.75 0.00 33.34 3.02
1802 9970 5.485662 AATAAGGCGTATCTTGTTGAAGC 57.514 39.130 0.00 0.00 29.11 3.86
1803 9971 1.739067 AGGCGTATCTTGTTGAAGCC 58.261 50.000 0.00 0.00 41.12 4.35
1804 9972 1.003118 AGGCGTATCTTGTTGAAGCCA 59.997 47.619 6.34 0.00 42.30 4.75
1805 9973 1.810151 GGCGTATCTTGTTGAAGCCAA 59.190 47.619 0.00 0.00 40.77 4.52
1806 9974 2.423538 GGCGTATCTTGTTGAAGCCAAT 59.576 45.455 0.00 0.00 40.77 3.16
1807 9975 3.625764 GGCGTATCTTGTTGAAGCCAATA 59.374 43.478 0.00 0.00 40.77 1.90
1808 9976 4.095782 GGCGTATCTTGTTGAAGCCAATAA 59.904 41.667 0.00 0.00 40.77 1.40
1809 9977 5.392595 GGCGTATCTTGTTGAAGCCAATAAA 60.393 40.000 0.00 0.00 40.77 1.40
1810 9978 6.265577 GCGTATCTTGTTGAAGCCAATAAAT 58.734 36.000 0.00 0.00 33.89 1.40
1811 9979 7.414436 GCGTATCTTGTTGAAGCCAATAAATA 58.586 34.615 0.00 0.00 33.89 1.40
1812 9980 7.587757 GCGTATCTTGTTGAAGCCAATAAATAG 59.412 37.037 0.00 0.00 33.89 1.73
1813 9981 8.826710 CGTATCTTGTTGAAGCCAATAAATAGA 58.173 33.333 0.00 0.00 33.89 1.98
1815 9983 7.088589 TCTTGTTGAAGCCAATAAATAGAGC 57.911 36.000 0.00 0.00 33.89 4.09
1816 9984 6.886459 TCTTGTTGAAGCCAATAAATAGAGCT 59.114 34.615 0.00 0.00 33.89 4.09
1817 9985 6.441093 TGTTGAAGCCAATAAATAGAGCTG 57.559 37.500 0.00 0.00 34.39 4.24
1818 9986 6.179756 TGTTGAAGCCAATAAATAGAGCTGA 58.820 36.000 0.00 0.00 34.39 4.26
1819 9987 6.317140 TGTTGAAGCCAATAAATAGAGCTGAG 59.683 38.462 0.00 0.00 34.39 3.35
1820 9988 5.371526 TGAAGCCAATAAATAGAGCTGAGG 58.628 41.667 0.00 0.00 33.18 3.86
1821 9989 5.104360 TGAAGCCAATAAATAGAGCTGAGGT 60.104 40.000 0.00 0.00 33.18 3.85
1822 9990 5.379706 AGCCAATAAATAGAGCTGAGGTT 57.620 39.130 0.00 0.00 31.23 3.50
1823 9991 6.500589 AGCCAATAAATAGAGCTGAGGTTA 57.499 37.500 0.00 0.00 31.23 2.85
1824 9992 7.084268 AGCCAATAAATAGAGCTGAGGTTAT 57.916 36.000 0.00 0.00 31.23 1.89
1825 9993 8.207350 AGCCAATAAATAGAGCTGAGGTTATA 57.793 34.615 0.00 0.00 31.23 0.98
1826 9994 8.317679 AGCCAATAAATAGAGCTGAGGTTATAG 58.682 37.037 0.00 0.00 31.23 1.31
1827 9995 8.097662 GCCAATAAATAGAGCTGAGGTTATAGT 58.902 37.037 0.00 0.00 0.00 2.12
1833 10001 9.549078 AAATAGAGCTGAGGTTATAGTTAAAGC 57.451 33.333 0.00 0.00 0.00 3.51
1834 10002 6.546428 AGAGCTGAGGTTATAGTTAAAGCA 57.454 37.500 0.00 0.00 31.85 3.91
1835 10003 6.578023 AGAGCTGAGGTTATAGTTAAAGCAG 58.422 40.000 0.00 0.00 31.85 4.24
1836 10004 5.119694 AGCTGAGGTTATAGTTAAAGCAGC 58.880 41.667 0.00 0.00 44.65 5.25
1837 10005 4.273724 GCTGAGGTTATAGTTAAAGCAGCC 59.726 45.833 0.00 0.00 40.04 4.85
1838 10006 5.428253 CTGAGGTTATAGTTAAAGCAGCCA 58.572 41.667 0.00 0.00 0.00 4.75
1839 10007 5.428253 TGAGGTTATAGTTAAAGCAGCCAG 58.572 41.667 0.00 0.00 0.00 4.85
1840 10008 5.045869 TGAGGTTATAGTTAAAGCAGCCAGT 60.046 40.000 0.00 0.00 0.00 4.00
1841 10009 6.155565 TGAGGTTATAGTTAAAGCAGCCAGTA 59.844 38.462 0.00 0.00 0.00 2.74
1842 10010 6.583562 AGGTTATAGTTAAAGCAGCCAGTAG 58.416 40.000 0.00 0.00 0.00 2.57
1843 10011 6.383147 AGGTTATAGTTAAAGCAGCCAGTAGA 59.617 38.462 0.00 0.00 0.00 2.59
1844 10012 7.046033 GGTTATAGTTAAAGCAGCCAGTAGAA 58.954 38.462 0.00 0.00 0.00 2.10
1845 10013 7.551617 GGTTATAGTTAAAGCAGCCAGTAGAAA 59.448 37.037 0.00 0.00 0.00 2.52
1846 10014 8.943002 GTTATAGTTAAAGCAGCCAGTAGAAAA 58.057 33.333 0.00 0.00 0.00 2.29
1847 10015 5.690997 AGTTAAAGCAGCCAGTAGAAAAC 57.309 39.130 0.00 0.00 0.00 2.43
1848 10016 4.519350 AGTTAAAGCAGCCAGTAGAAAACC 59.481 41.667 0.00 0.00 0.00 3.27
1849 10017 2.656947 AAGCAGCCAGTAGAAAACCA 57.343 45.000 0.00 0.00 0.00 3.67
1850 10018 2.656947 AGCAGCCAGTAGAAAACCAA 57.343 45.000 0.00 0.00 0.00 3.67
1851 10019 2.944129 AGCAGCCAGTAGAAAACCAAA 58.056 42.857 0.00 0.00 0.00 3.28
1852 10020 3.295973 AGCAGCCAGTAGAAAACCAAAA 58.704 40.909 0.00 0.00 0.00 2.44
1853 10021 3.897505 AGCAGCCAGTAGAAAACCAAAAT 59.102 39.130 0.00 0.00 0.00 1.82
1854 10022 5.076873 AGCAGCCAGTAGAAAACCAAAATA 58.923 37.500 0.00 0.00 0.00 1.40
1855 10023 5.538433 AGCAGCCAGTAGAAAACCAAAATAA 59.462 36.000 0.00 0.00 0.00 1.40
1856 10024 5.633601 GCAGCCAGTAGAAAACCAAAATAAC 59.366 40.000 0.00 0.00 0.00 1.89
1857 10025 6.516693 GCAGCCAGTAGAAAACCAAAATAACT 60.517 38.462 0.00 0.00 0.00 2.24
1858 10026 7.308951 GCAGCCAGTAGAAAACCAAAATAACTA 60.309 37.037 0.00 0.00 0.00 2.24
1859 10027 8.237267 CAGCCAGTAGAAAACCAAAATAACTAG 58.763 37.037 0.00 0.00 0.00 2.57
1860 10028 7.942894 AGCCAGTAGAAAACCAAAATAACTAGT 59.057 33.333 0.00 0.00 0.00 2.57
1861 10029 8.573885 GCCAGTAGAAAACCAAAATAACTAGTT 58.426 33.333 13.68 13.68 0.00 2.24
1880 10048 9.780186 AACTAGTTAAAGTAAGCATGAAAGAGT 57.220 29.630 6.26 0.00 0.00 3.24
1881 10049 9.780186 ACTAGTTAAAGTAAGCATGAAAGAGTT 57.220 29.630 0.00 0.00 0.00 3.01
1888 10056 9.914131 AAAGTAAGCATGAAAGAGTTAAATTCC 57.086 29.630 0.00 0.00 0.00 3.01
1889 10057 8.635765 AGTAAGCATGAAAGAGTTAAATTCCA 57.364 30.769 0.00 0.00 0.00 3.53
1890 10058 9.247861 AGTAAGCATGAAAGAGTTAAATTCCAT 57.752 29.630 0.00 0.00 0.00 3.41
1891 10059 9.860898 GTAAGCATGAAAGAGTTAAATTCCATT 57.139 29.630 0.00 0.00 0.00 3.16
1893 10061 9.783081 AAGCATGAAAGAGTTAAATTCCATTTT 57.217 25.926 0.00 0.00 33.82 1.82
1894 10062 9.783081 AGCATGAAAGAGTTAAATTCCATTTTT 57.217 25.926 0.00 0.00 33.82 1.94
1923 10091 9.590451 TTACTACACTACATATGTTGGTAAAGC 57.410 33.333 14.77 0.00 30.94 3.51
1924 10092 7.617225 ACTACACTACATATGTTGGTAAAGCA 58.383 34.615 14.77 0.00 0.00 3.91
1925 10093 8.265055 ACTACACTACATATGTTGGTAAAGCAT 58.735 33.333 14.77 0.00 0.00 3.79
1926 10094 7.938140 ACACTACATATGTTGGTAAAGCATT 57.062 32.000 14.77 0.00 0.00 3.56
1927 10095 8.348285 ACACTACATATGTTGGTAAAGCATTT 57.652 30.769 14.77 0.00 43.42 2.32
1928 10096 9.456147 ACACTACATATGTTGGTAAAGCATTTA 57.544 29.630 14.77 0.00 40.09 1.40
1945 10113 9.700831 AAAGCATTTACCTAAGTTATGGAAGAT 57.299 29.630 5.66 0.00 35.86 2.40
1946 10114 9.700831 AAGCATTTACCTAAGTTATGGAAGATT 57.299 29.630 5.66 0.00 0.00 2.40
1947 10115 9.343539 AGCATTTACCTAAGTTATGGAAGATTC 57.656 33.333 5.66 0.00 0.00 2.52
1948 10116 9.120538 GCATTTACCTAAGTTATGGAAGATTCA 57.879 33.333 5.66 0.00 0.00 2.57
2008 10176 9.469097 ACAAGATAGAGTAAGATACAGAAGTGT 57.531 33.333 0.00 0.00 41.06 3.55
2020 10188 8.608844 AGATACAGAAGTGTAAAAGAAAGTGG 57.391 34.615 0.00 0.00 42.54 4.00
2021 10189 8.429641 AGATACAGAAGTGTAAAAGAAAGTGGA 58.570 33.333 0.00 0.00 42.54 4.02
2022 10190 9.220767 GATACAGAAGTGTAAAAGAAAGTGGAT 57.779 33.333 0.00 0.00 42.54 3.41
2023 10191 7.881775 ACAGAAGTGTAAAAGAAAGTGGATT 57.118 32.000 0.00 0.00 34.05 3.01
2024 10192 7.931275 ACAGAAGTGTAAAAGAAAGTGGATTC 58.069 34.615 0.00 0.00 34.05 2.52
2025 10193 7.556275 ACAGAAGTGTAAAAGAAAGTGGATTCA 59.444 33.333 0.00 0.00 34.05 2.57
2026 10194 8.571336 CAGAAGTGTAAAAGAAAGTGGATTCAT 58.429 33.333 0.00 0.00 0.00 2.57
2027 10195 8.787852 AGAAGTGTAAAAGAAAGTGGATTCATC 58.212 33.333 0.00 0.00 0.00 2.92
2028 10196 8.463930 AAGTGTAAAAGAAAGTGGATTCATCA 57.536 30.769 0.00 0.00 0.00 3.07
2029 10197 8.103948 AGTGTAAAAGAAAGTGGATTCATCAG 57.896 34.615 0.00 0.00 0.00 2.90
2030 10198 7.939039 AGTGTAAAAGAAAGTGGATTCATCAGA 59.061 33.333 0.00 0.00 0.00 3.27
2031 10199 8.734386 GTGTAAAAGAAAGTGGATTCATCAGAT 58.266 33.333 0.00 0.00 0.00 2.90
2032 10200 8.733458 TGTAAAAGAAAGTGGATTCATCAGATG 58.267 33.333 3.71 3.71 0.00 2.90
2033 10201 8.950210 GTAAAAGAAAGTGGATTCATCAGATGA 58.050 33.333 9.21 9.21 37.55 2.92
2034 10202 8.591114 AAAAGAAAGTGGATTCATCAGATGAT 57.409 30.769 14.11 4.68 39.39 2.45
2035 10203 9.690913 AAAAGAAAGTGGATTCATCAGATGATA 57.309 29.630 14.11 5.93 39.39 2.15
2036 10204 8.674263 AAGAAAGTGGATTCATCAGATGATAC 57.326 34.615 14.11 10.58 39.39 2.24
2037 10205 7.799081 AGAAAGTGGATTCATCAGATGATACA 58.201 34.615 14.11 10.33 39.39 2.29
2038 10206 8.438373 AGAAAGTGGATTCATCAGATGATACAT 58.562 33.333 14.11 4.91 39.39 2.29
2039 10207 7.981102 AAGTGGATTCATCAGATGATACATG 57.019 36.000 14.11 0.00 39.39 3.21
2040 10208 7.312415 AGTGGATTCATCAGATGATACATGA 57.688 36.000 14.11 0.00 39.39 3.07
2041 10209 7.387643 AGTGGATTCATCAGATGATACATGAG 58.612 38.462 14.11 0.00 39.39 2.90
2042 10210 7.016366 AGTGGATTCATCAGATGATACATGAGT 59.984 37.037 14.11 0.00 39.39 3.41
2043 10211 7.331440 GTGGATTCATCAGATGATACATGAGTC 59.669 40.741 14.11 0.00 39.39 3.36
2044 10212 6.817641 GGATTCATCAGATGATACATGAGTCC 59.182 42.308 14.11 4.08 41.91 3.85
2045 10213 5.735285 TCATCAGATGATACATGAGTCCC 57.265 43.478 9.21 0.00 33.59 4.46
2046 10214 5.400870 TCATCAGATGATACATGAGTCCCT 58.599 41.667 9.21 0.00 33.59 4.20
2047 10215 6.555711 TCATCAGATGATACATGAGTCCCTA 58.444 40.000 9.21 0.00 33.59 3.53
2048 10216 7.012607 TCATCAGATGATACATGAGTCCCTAA 58.987 38.462 9.21 0.00 33.59 2.69
2049 10217 7.677319 TCATCAGATGATACATGAGTCCCTAAT 59.323 37.037 9.21 0.00 33.59 1.73
2050 10218 7.862274 TCAGATGATACATGAGTCCCTAATT 57.138 36.000 0.00 0.00 0.00 1.40
2051 10219 7.901029 TCAGATGATACATGAGTCCCTAATTC 58.099 38.462 0.00 0.00 0.00 2.17
2052 10220 7.038729 TCAGATGATACATGAGTCCCTAATTCC 60.039 40.741 0.00 0.00 0.00 3.01
2053 10221 5.468540 TGATACATGAGTCCCTAATTCCG 57.531 43.478 0.00 0.00 0.00 4.30
2054 10222 5.144832 TGATACATGAGTCCCTAATTCCGA 58.855 41.667 0.00 0.00 0.00 4.55
2055 10223 5.600898 TGATACATGAGTCCCTAATTCCGAA 59.399 40.000 0.00 0.00 0.00 4.30
2056 10224 6.270000 TGATACATGAGTCCCTAATTCCGAAT 59.730 38.462 0.00 0.00 0.00 3.34
2057 10225 4.962155 ACATGAGTCCCTAATTCCGAATC 58.038 43.478 0.00 0.00 0.00 2.52
2058 10226 4.408921 ACATGAGTCCCTAATTCCGAATCA 59.591 41.667 0.00 3.06 35.37 2.57
2059 10227 5.104527 ACATGAGTCCCTAATTCCGAATCAA 60.105 40.000 0.00 0.00 34.66 2.57
2060 10228 5.023533 TGAGTCCCTAATTCCGAATCAAG 57.976 43.478 0.00 0.00 28.57 3.02
2061 10229 4.714802 TGAGTCCCTAATTCCGAATCAAGA 59.285 41.667 0.00 0.00 28.57 3.02
2062 10230 5.163405 TGAGTCCCTAATTCCGAATCAAGAG 60.163 44.000 0.00 0.00 28.57 2.85
2063 10231 4.962995 AGTCCCTAATTCCGAATCAAGAGA 59.037 41.667 0.00 0.00 0.00 3.10
2064 10232 5.604650 AGTCCCTAATTCCGAATCAAGAGAT 59.395 40.000 0.00 0.00 35.53 2.75
2065 10233 6.100424 AGTCCCTAATTCCGAATCAAGAGATT 59.900 38.462 0.00 0.00 46.85 2.40
2066 10234 6.768381 GTCCCTAATTCCGAATCAAGAGATTT 59.232 38.462 0.00 0.00 44.30 2.17
2067 10235 6.767902 TCCCTAATTCCGAATCAAGAGATTTG 59.232 38.462 0.00 0.00 44.30 2.32
2068 10236 6.543831 CCCTAATTCCGAATCAAGAGATTTGT 59.456 38.462 0.00 0.00 44.30 2.83
2069 10237 7.067494 CCCTAATTCCGAATCAAGAGATTTGTT 59.933 37.037 0.00 0.00 44.30 2.83
2070 10238 7.912250 CCTAATTCCGAATCAAGAGATTTGTTG 59.088 37.037 0.00 0.00 44.30 3.33
2071 10239 6.824305 ATTCCGAATCAAGAGATTTGTTGT 57.176 33.333 0.00 0.00 44.30 3.32
2072 10240 5.611796 TCCGAATCAAGAGATTTGTTGTG 57.388 39.130 0.00 0.00 44.30 3.33
2073 10241 4.455533 TCCGAATCAAGAGATTTGTTGTGG 59.544 41.667 0.00 0.00 44.30 4.17
2074 10242 4.455533 CCGAATCAAGAGATTTGTTGTGGA 59.544 41.667 0.00 0.00 44.30 4.02
2075 10243 5.048782 CCGAATCAAGAGATTTGTTGTGGAA 60.049 40.000 0.00 0.00 44.30 3.53
2076 10244 6.349611 CCGAATCAAGAGATTTGTTGTGGAAT 60.350 38.462 0.00 0.00 44.30 3.01
2077 10245 7.086376 CGAATCAAGAGATTTGTTGTGGAATT 58.914 34.615 0.00 0.00 44.30 2.17
2078 10246 7.596248 CGAATCAAGAGATTTGTTGTGGAATTT 59.404 33.333 0.00 0.00 44.30 1.82
2079 10247 8.597662 AATCAAGAGATTTGTTGTGGAATTTG 57.402 30.769 0.00 0.00 41.64 2.32
2080 10248 7.111247 TCAAGAGATTTGTTGTGGAATTTGT 57.889 32.000 0.00 0.00 0.00 2.83
2081 10249 7.202526 TCAAGAGATTTGTTGTGGAATTTGTC 58.797 34.615 0.00 0.00 0.00 3.18
2082 10250 6.713762 AGAGATTTGTTGTGGAATTTGTCA 57.286 33.333 0.00 0.00 0.00 3.58
2083 10251 7.111247 AGAGATTTGTTGTGGAATTTGTCAA 57.889 32.000 0.00 0.00 0.00 3.18
2084 10252 6.980397 AGAGATTTGTTGTGGAATTTGTCAAC 59.020 34.615 11.13 11.13 40.03 3.18
2085 10253 6.877236 AGATTTGTTGTGGAATTTGTCAACT 58.123 32.000 15.85 3.20 40.20 3.16
2086 10254 6.757947 AGATTTGTTGTGGAATTTGTCAACTG 59.242 34.615 15.85 0.00 40.20 3.16
2087 10255 5.651387 TTGTTGTGGAATTTGTCAACTGA 57.349 34.783 15.85 7.21 40.20 3.41
2088 10256 5.247507 TGTTGTGGAATTTGTCAACTGAG 57.752 39.130 15.85 0.00 40.20 3.35
2089 10257 4.704540 TGTTGTGGAATTTGTCAACTGAGT 59.295 37.500 15.85 0.00 40.20 3.41
2090 10258 5.883115 TGTTGTGGAATTTGTCAACTGAGTA 59.117 36.000 15.85 0.91 40.20 2.59
2091 10259 6.375736 TGTTGTGGAATTTGTCAACTGAGTAA 59.624 34.615 15.85 0.00 40.20 2.24
2092 10260 7.094162 TGTTGTGGAATTTGTCAACTGAGTAAA 60.094 33.333 15.85 0.00 40.20 2.01
2093 10261 7.026631 TGTGGAATTTGTCAACTGAGTAAAG 57.973 36.000 0.00 0.00 30.51 1.85
2094 10262 6.601613 TGTGGAATTTGTCAACTGAGTAAAGT 59.398 34.615 0.00 0.00 30.51 2.66
2095 10263 7.771361 TGTGGAATTTGTCAACTGAGTAAAGTA 59.229 33.333 0.00 0.00 30.51 2.24
2096 10264 8.617809 GTGGAATTTGTCAACTGAGTAAAGTAA 58.382 33.333 0.00 0.00 0.00 2.24
2097 10265 9.349713 TGGAATTTGTCAACTGAGTAAAGTAAT 57.650 29.630 0.00 0.00 0.00 1.89
2126 10294 8.798975 ATTAAGAACTAGATCATCTAACCCCA 57.201 34.615 0.00 0.00 0.00 4.96
2127 10295 8.798975 TTAAGAACTAGATCATCTAACCCCAT 57.201 34.615 0.00 0.00 0.00 4.00
2128 10296 7.698163 AAGAACTAGATCATCTAACCCCATT 57.302 36.000 0.00 0.00 0.00 3.16
2129 10297 7.072263 AGAACTAGATCATCTAACCCCATTG 57.928 40.000 0.00 0.00 0.00 2.82
2130 10298 6.846505 AGAACTAGATCATCTAACCCCATTGA 59.153 38.462 0.00 0.00 0.00 2.57
2131 10299 7.348274 AGAACTAGATCATCTAACCCCATTGAA 59.652 37.037 0.00 0.00 0.00 2.69
2132 10300 7.639062 ACTAGATCATCTAACCCCATTGAAT 57.361 36.000 0.00 0.00 0.00 2.57
2133 10301 7.456725 ACTAGATCATCTAACCCCATTGAATG 58.543 38.462 0.00 0.00 0.00 2.67
2134 10302 6.520021 AGATCATCTAACCCCATTGAATGA 57.480 37.500 6.76 0.00 31.16 2.57
2135 10303 6.914665 AGATCATCTAACCCCATTGAATGAA 58.085 36.000 6.76 0.00 30.69 2.57
2136 10304 7.356680 AGATCATCTAACCCCATTGAATGAAA 58.643 34.615 6.76 0.00 30.69 2.69
2137 10305 7.840716 AGATCATCTAACCCCATTGAATGAAAA 59.159 33.333 6.76 0.00 30.69 2.29
2138 10306 7.789202 TCATCTAACCCCATTGAATGAAAAA 57.211 32.000 6.76 0.00 0.00 1.94
2209 10377 6.493449 TTTGTAATGTTCATCGCAATCTGA 57.507 33.333 0.00 0.00 0.00 3.27
2224 10398 5.004061 CGCAATCTGAAATGCAAGTTACATG 59.996 40.000 15.95 0.00 42.68 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.371097 CTGCATACTCACGGGCGGT 62.371 63.158 0.00 0.00 0.00 5.68
1 2 2.586079 CTGCATACTCACGGGCGG 60.586 66.667 0.00 0.00 0.00 6.13
2 3 3.264897 GCTGCATACTCACGGGCG 61.265 66.667 0.00 0.00 0.00 6.13
5 6 0.723414 CTGTTGCTGCATACTCACGG 59.277 55.000 1.84 0.00 0.00 4.94
6 7 0.095935 GCTGTTGCTGCATACTCACG 59.904 55.000 1.84 0.00 36.03 4.35
7 8 3.984292 GCTGTTGCTGCATACTCAC 57.016 52.632 1.84 0.00 36.03 3.51
16 17 3.478314 CGTGCACGATAGCTGTTGCTG 62.478 57.143 34.93 0.00 45.67 4.41
17 18 1.354337 CGTGCACGATAGCTGTTGCT 61.354 55.000 34.93 0.00 46.92 3.91
18 19 1.059369 CGTGCACGATAGCTGTTGC 59.941 57.895 34.93 0.00 43.02 4.17
19 20 1.014044 ACCGTGCACGATAGCTGTTG 61.014 55.000 39.10 21.15 43.02 3.33
20 21 0.736325 GACCGTGCACGATAGCTGTT 60.736 55.000 39.10 12.78 43.02 3.16
21 22 1.153823 GACCGTGCACGATAGCTGT 60.154 57.895 39.10 26.39 43.02 4.40
22 23 0.867753 GAGACCGTGCACGATAGCTG 60.868 60.000 39.10 23.33 43.02 4.24
23 24 1.032657 AGAGACCGTGCACGATAGCT 61.033 55.000 39.10 27.12 43.02 3.32
24 25 0.179134 AAGAGACCGTGCACGATAGC 60.179 55.000 39.10 23.96 43.02 2.97
25 26 2.279582 AAAGAGACCGTGCACGATAG 57.720 50.000 39.10 24.80 43.02 2.08
26 27 2.288579 ACAAAAGAGACCGTGCACGATA 60.289 45.455 39.10 0.00 43.02 2.92
27 28 1.148310 CAAAAGAGACCGTGCACGAT 58.852 50.000 39.10 26.47 43.02 3.73
28 29 0.179094 ACAAAAGAGACCGTGCACGA 60.179 50.000 39.10 0.00 43.02 4.35
29 30 0.655733 AACAAAAGAGACCGTGCACG 59.344 50.000 31.77 31.77 39.44 5.34
30 31 1.002792 GGAACAAAAGAGACCGTGCAC 60.003 52.381 6.82 6.82 0.00 4.57
31 32 1.305201 GGAACAAAAGAGACCGTGCA 58.695 50.000 0.00 0.00 0.00 4.57
32 33 1.002792 GTGGAACAAAAGAGACCGTGC 60.003 52.381 0.00 0.00 44.16 5.34
46 47 0.819259 TTGGCTGCAGAGTGTGGAAC 60.819 55.000 20.43 0.00 37.35 3.62
47 48 0.106769 TTTGGCTGCAGAGTGTGGAA 60.107 50.000 20.43 0.00 0.00 3.53
48 49 0.535780 CTTTGGCTGCAGAGTGTGGA 60.536 55.000 20.43 0.00 0.00 4.02
49 50 0.820891 ACTTTGGCTGCAGAGTGTGG 60.821 55.000 20.43 4.72 0.00 4.17
50 51 1.027357 AACTTTGGCTGCAGAGTGTG 58.973 50.000 20.43 6.41 0.00 3.82
51 52 1.406539 CAAACTTTGGCTGCAGAGTGT 59.593 47.619 20.43 3.73 0.00 3.55
52 53 1.406539 ACAAACTTTGGCTGCAGAGTG 59.593 47.619 20.43 3.66 34.12 3.51
53 54 1.767759 ACAAACTTTGGCTGCAGAGT 58.232 45.000 20.43 9.14 34.12 3.24
54 55 2.159198 ACAACAAACTTTGGCTGCAGAG 60.159 45.455 20.43 8.39 34.12 3.35
55 56 1.824230 ACAACAAACTTTGGCTGCAGA 59.176 42.857 20.43 0.00 34.12 4.26
56 57 1.928503 CACAACAAACTTTGGCTGCAG 59.071 47.619 10.11 10.11 34.12 4.41
57 58 1.405256 CCACAACAAACTTTGGCTGCA 60.405 47.619 0.50 0.00 34.12 4.41
58 59 1.289276 CCACAACAAACTTTGGCTGC 58.711 50.000 6.47 0.00 34.12 5.25
59 60 2.539476 GACCACAACAAACTTTGGCTG 58.461 47.619 6.47 5.60 31.76 4.85
60 61 1.134175 CGACCACAACAAACTTTGGCT 59.866 47.619 6.47 0.00 31.76 4.75
61 62 1.555477 CGACCACAACAAACTTTGGC 58.445 50.000 6.47 0.00 31.76 4.52
62 63 1.801025 GCCGACCACAACAAACTTTGG 60.801 52.381 6.47 0.00 35.06 3.28
63 64 1.135257 TGCCGACCACAACAAACTTTG 60.135 47.619 0.00 0.00 0.00 2.77
64 65 1.134175 CTGCCGACCACAACAAACTTT 59.866 47.619 0.00 0.00 0.00 2.66
65 66 0.738389 CTGCCGACCACAACAAACTT 59.262 50.000 0.00 0.00 0.00 2.66
66 67 1.724582 GCTGCCGACCACAACAAACT 61.725 55.000 0.00 0.00 0.00 2.66
67 68 1.299089 GCTGCCGACCACAACAAAC 60.299 57.895 0.00 0.00 0.00 2.93
68 69 1.750780 TGCTGCCGACCACAACAAA 60.751 52.632 0.00 0.00 0.00 2.83
69 70 2.124529 TGCTGCCGACCACAACAA 60.125 55.556 0.00 0.00 0.00 2.83
70 71 2.899838 GTGCTGCCGACCACAACA 60.900 61.111 0.00 0.00 32.37 3.33
71 72 2.591715 AGTGCTGCCGACCACAAC 60.592 61.111 0.00 0.00 34.48 3.32
72 73 2.280797 GAGTGCTGCCGACCACAA 60.281 61.111 0.00 0.00 34.48 3.33
73 74 3.519973 CTGAGTGCTGCCGACCACA 62.520 63.158 0.00 0.00 34.48 4.17
74 75 2.740055 CTGAGTGCTGCCGACCAC 60.740 66.667 0.00 0.00 0.00 4.16
75 76 4.687215 GCTGAGTGCTGCCGACCA 62.687 66.667 0.00 0.00 38.95 4.02
83 84 4.057428 GACCGACGGCTGAGTGCT 62.057 66.667 15.39 0.00 42.39 4.40
102 103 3.700731 CTAATGCACGCACGCACGG 62.701 63.158 0.00 0.00 46.56 4.94
103 104 2.024226 ATCTAATGCACGCACGCACG 62.024 55.000 0.00 0.00 46.56 5.34
104 105 0.927537 TATCTAATGCACGCACGCAC 59.072 50.000 0.00 0.00 46.56 5.34
106 107 1.190323 GACTATCTAATGCACGCACGC 59.810 52.381 0.00 0.00 0.00 5.34
107 108 2.459934 TGACTATCTAATGCACGCACG 58.540 47.619 0.00 0.00 0.00 5.34
108 109 3.243877 CACTGACTATCTAATGCACGCAC 59.756 47.826 0.00 0.00 0.00 5.34
109 110 3.447742 CACTGACTATCTAATGCACGCA 58.552 45.455 0.00 0.00 0.00 5.24
110 111 2.219674 GCACTGACTATCTAATGCACGC 59.780 50.000 0.00 0.00 33.27 5.34
111 112 2.469147 CGCACTGACTATCTAATGCACG 59.531 50.000 0.00 0.00 33.27 5.34
112 113 2.219674 GCGCACTGACTATCTAATGCAC 59.780 50.000 0.30 0.00 33.27 4.57
113 114 2.473816 GCGCACTGACTATCTAATGCA 58.526 47.619 0.30 0.00 33.27 3.96
114 115 1.453524 CGCGCACTGACTATCTAATGC 59.546 52.381 8.75 0.00 0.00 3.56
115 116 1.453524 GCGCGCACTGACTATCTAATG 59.546 52.381 29.10 0.00 0.00 1.90
116 117 1.603172 GGCGCGCACTGACTATCTAAT 60.603 52.381 34.42 0.00 0.00 1.73
117 118 0.248907 GGCGCGCACTGACTATCTAA 60.249 55.000 34.42 0.00 0.00 2.10
118 119 1.359117 GGCGCGCACTGACTATCTA 59.641 57.895 34.42 0.00 0.00 1.98
119 120 2.105128 GGCGCGCACTGACTATCT 59.895 61.111 34.42 0.00 0.00 1.98
120 121 2.202743 TGGCGCGCACTGACTATC 60.203 61.111 34.42 12.54 0.00 2.08
121 122 2.202797 CTGGCGCGCACTGACTAT 60.203 61.111 34.42 0.00 0.00 2.12
132 133 0.940047 GGAGTATCTAACGCTGGCGC 60.940 60.000 15.04 0.00 38.02 6.53
133 134 0.318784 GGGAGTATCTAACGCTGGCG 60.319 60.000 13.56 13.56 39.63 5.69
134 135 0.750850 TGGGAGTATCTAACGCTGGC 59.249 55.000 0.00 0.00 33.73 4.85
135 136 2.431057 ACTTGGGAGTATCTAACGCTGG 59.569 50.000 0.00 0.00 33.32 4.85
136 137 3.802948 ACTTGGGAGTATCTAACGCTG 57.197 47.619 0.00 0.00 33.32 5.18
137 138 4.222145 TGAAACTTGGGAGTATCTAACGCT 59.778 41.667 0.00 0.00 34.21 5.07
138 139 4.329256 GTGAAACTTGGGAGTATCTAACGC 59.671 45.833 0.00 0.00 34.21 4.84
163 164 0.680280 TTCTCTTCCTCCGGGAGACG 60.680 60.000 25.60 9.73 43.29 4.18
164 165 1.478916 CTTTCTCTTCCTCCGGGAGAC 59.521 57.143 25.60 0.00 43.29 3.36
165 166 1.358103 TCTTTCTCTTCCTCCGGGAGA 59.642 52.381 25.60 8.74 43.29 3.71
166 167 1.853963 TCTTTCTCTTCCTCCGGGAG 58.146 55.000 17.41 17.41 43.29 4.30
167 168 2.111384 CATCTTTCTCTTCCTCCGGGA 58.889 52.381 0.00 0.00 40.36 5.14
168 169 1.474143 GCATCTTTCTCTTCCTCCGGG 60.474 57.143 0.00 0.00 0.00 5.73
169 170 1.804372 CGCATCTTTCTCTTCCTCCGG 60.804 57.143 0.00 0.00 0.00 5.14
170 171 1.565305 CGCATCTTTCTCTTCCTCCG 58.435 55.000 0.00 0.00 0.00 4.63
171 172 1.482593 TCCGCATCTTTCTCTTCCTCC 59.517 52.381 0.00 0.00 0.00 4.30
172 173 2.545731 GTCCGCATCTTTCTCTTCCTC 58.454 52.381 0.00 0.00 0.00 3.71
173 174 1.208293 GGTCCGCATCTTTCTCTTCCT 59.792 52.381 0.00 0.00 0.00 3.36
174 175 1.208293 AGGTCCGCATCTTTCTCTTCC 59.792 52.381 0.00 0.00 0.00 3.46
175 176 2.682155 AGGTCCGCATCTTTCTCTTC 57.318 50.000 0.00 0.00 0.00 2.87
176 177 2.569404 AGAAGGTCCGCATCTTTCTCTT 59.431 45.455 0.00 0.00 27.64 2.85
177 178 2.167487 GAGAAGGTCCGCATCTTTCTCT 59.833 50.000 13.38 0.00 41.53 3.10
178 179 2.545731 GAGAAGGTCCGCATCTTTCTC 58.454 52.381 8.17 8.17 39.49 2.87
179 180 1.208293 GGAGAAGGTCCGCATCTTTCT 59.792 52.381 0.00 0.00 34.84 2.52
180 181 1.657822 GGAGAAGGTCCGCATCTTTC 58.342 55.000 0.00 0.00 34.84 2.62
181 182 3.863407 GGAGAAGGTCCGCATCTTT 57.137 52.632 0.00 0.00 34.84 2.52
189 190 2.288273 CGTAATCATCGGGAGAAGGTCC 60.288 54.545 0.00 0.00 45.37 4.46
190 191 2.361438 ACGTAATCATCGGGAGAAGGTC 59.639 50.000 0.00 0.00 45.37 3.85
191 192 2.361438 GACGTAATCATCGGGAGAAGGT 59.639 50.000 0.00 0.00 45.37 3.50
192 193 2.288273 GGACGTAATCATCGGGAGAAGG 60.288 54.545 0.00 0.00 45.37 3.46
193 194 2.604855 CGGACGTAATCATCGGGAGAAG 60.605 54.545 0.00 0.00 45.37 2.85
194 195 1.335810 CGGACGTAATCATCGGGAGAA 59.664 52.381 0.00 0.00 45.37 2.87
195 196 0.949397 CGGACGTAATCATCGGGAGA 59.051 55.000 0.00 0.00 46.90 3.71
196 197 0.949397 TCGGACGTAATCATCGGGAG 59.051 55.000 0.00 0.00 0.00 4.30
197 198 1.391577 TTCGGACGTAATCATCGGGA 58.608 50.000 0.00 0.00 0.00 5.14
198 199 1.856597 GTTTCGGACGTAATCATCGGG 59.143 52.381 0.00 0.00 0.00 5.14
199 200 2.534349 CAGTTTCGGACGTAATCATCGG 59.466 50.000 0.00 0.00 0.00 4.18
200 201 2.034842 GCAGTTTCGGACGTAATCATCG 60.035 50.000 0.00 0.00 0.00 3.84
201 202 2.927477 TGCAGTTTCGGACGTAATCATC 59.073 45.455 0.00 0.00 0.00 2.92
202 203 2.967362 TGCAGTTTCGGACGTAATCAT 58.033 42.857 0.00 0.00 0.00 2.45
203 204 2.442212 TGCAGTTTCGGACGTAATCA 57.558 45.000 0.00 0.00 0.00 2.57
204 205 3.799137 TTTGCAGTTTCGGACGTAATC 57.201 42.857 0.00 0.00 0.00 1.75
205 206 4.201930 TGTTTTTGCAGTTTCGGACGTAAT 60.202 37.500 0.00 0.00 0.00 1.89
206 207 3.126514 TGTTTTTGCAGTTTCGGACGTAA 59.873 39.130 0.00 0.00 0.00 3.18
207 208 2.676839 TGTTTTTGCAGTTTCGGACGTA 59.323 40.909 0.00 0.00 0.00 3.57
208 209 1.469308 TGTTTTTGCAGTTTCGGACGT 59.531 42.857 0.00 0.00 0.00 4.34
209 210 2.181426 TGTTTTTGCAGTTTCGGACG 57.819 45.000 0.00 0.00 0.00 4.79
210 211 5.254842 CAATTTGTTTTTGCAGTTTCGGAC 58.745 37.500 0.00 0.00 0.00 4.79
211 212 4.201763 GCAATTTGTTTTTGCAGTTTCGGA 60.202 37.500 3.68 0.00 46.78 4.55
212 213 4.027724 GCAATTTGTTTTTGCAGTTTCGG 58.972 39.130 3.68 0.00 46.78 4.30
290 291 1.019805 GGCACTCACCGGTCTTTAGC 61.020 60.000 2.59 5.47 0.00 3.09
291 292 0.320374 TGGCACTCACCGGTCTTTAG 59.680 55.000 2.59 2.28 0.00 1.85
292 293 0.759959 TTGGCACTCACCGGTCTTTA 59.240 50.000 2.59 0.00 0.00 1.85
348 361 3.458163 CATGGGGGCTTGCAGCTG 61.458 66.667 10.11 10.11 41.99 4.24
349 362 1.648302 TATCATGGGGGCTTGCAGCT 61.648 55.000 7.85 0.00 41.99 4.24
350 363 1.152694 TATCATGGGGGCTTGCAGC 60.153 57.895 0.00 0.11 41.46 5.25
351 364 1.168407 CGTATCATGGGGGCTTGCAG 61.168 60.000 0.00 0.00 0.00 4.41
352 365 1.152984 CGTATCATGGGGGCTTGCA 60.153 57.895 0.00 0.00 0.00 4.08
353 366 0.465460 TTCGTATCATGGGGGCTTGC 60.465 55.000 0.00 0.00 0.00 4.01
354 367 1.676006 GTTTCGTATCATGGGGGCTTG 59.324 52.381 0.00 0.00 0.00 4.01
355 368 1.745827 CGTTTCGTATCATGGGGGCTT 60.746 52.381 0.00 0.00 0.00 4.35
356 369 0.179056 CGTTTCGTATCATGGGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
357 370 0.463116 ACGTTTCGTATCATGGGGGC 60.463 55.000 0.00 0.00 38.73 5.80
358 371 1.295792 CACGTTTCGTATCATGGGGG 58.704 55.000 0.00 0.00 38.32 5.40
390 403 2.784347 AGAGAGGTTTGTTTAGCTGGC 58.216 47.619 0.00 0.00 0.00 4.85
392 405 8.603242 TTAAGTAAGAGAGGTTTGTTTAGCTG 57.397 34.615 0.00 0.00 0.00 4.24
407 420 5.350091 GCTGAAGGAGCTGTTTAAGTAAGAG 59.650 44.000 0.00 0.00 45.21 2.85
408 421 5.238583 GCTGAAGGAGCTGTTTAAGTAAGA 58.761 41.667 0.00 0.00 45.21 2.10
464 518 3.247173 CCGATCTCAAGCTACAAGCAATC 59.753 47.826 1.22 0.00 45.56 2.67
478 532 1.300971 GCAACAGCTTGCCGATCTCA 61.301 55.000 0.00 0.00 46.27 3.27
479 533 1.427020 GCAACAGCTTGCCGATCTC 59.573 57.895 0.00 0.00 46.27 2.75
490 544 4.312231 TCAAGCGCGTGCAACAGC 62.312 61.111 24.79 0.00 46.23 4.40
491 545 2.127496 CTCAAGCGCGTGCAACAG 60.127 61.111 24.79 11.04 46.23 3.16
492 546 3.648982 CCTCAAGCGCGTGCAACA 61.649 61.111 24.79 4.58 46.23 3.33
493 547 3.579626 GACCTCAAGCGCGTGCAAC 62.580 63.158 24.79 6.22 46.23 4.17
494 548 3.345808 GACCTCAAGCGCGTGCAA 61.346 61.111 24.79 7.14 46.23 4.08
535 589 0.931662 GCAGCAGCAACTTGTGAACG 60.932 55.000 0.00 0.00 41.58 3.95
562 1056 1.372997 ACGAGATGTGACCGTGCAC 60.373 57.895 6.82 6.82 39.22 4.57
572 1066 3.685139 AGATGGACAAACACGAGATGT 57.315 42.857 0.00 0.00 46.42 3.06
575 1069 3.572682 ACACTAGATGGACAAACACGAGA 59.427 43.478 0.00 0.00 0.00 4.04
577 1071 4.330944 AACACTAGATGGACAAACACGA 57.669 40.909 0.00 0.00 0.00 4.35
578 1072 4.272504 ACAAACACTAGATGGACAAACACG 59.727 41.667 0.00 0.00 0.00 4.49
579 1073 5.751243 ACAAACACTAGATGGACAAACAC 57.249 39.130 0.00 0.00 0.00 3.32
580 1074 5.883115 TGAACAAACACTAGATGGACAAACA 59.117 36.000 0.00 0.00 0.00 2.83
581 1075 6.371809 TGAACAAACACTAGATGGACAAAC 57.628 37.500 0.00 0.00 0.00 2.93
585 1170 9.774742 GATATTTTGAACAAACACTAGATGGAC 57.225 33.333 0.00 0.00 0.00 4.02
587 1172 9.559958 GTGATATTTTGAACAAACACTAGATGG 57.440 33.333 0.00 0.00 0.00 3.51
645 1230 6.985188 TGTGATATTTTCTGAAGGCTACAC 57.015 37.500 0.00 0.00 0.00 2.90
646 1231 7.168219 AGTTGTGATATTTTCTGAAGGCTACA 58.832 34.615 0.00 0.00 0.00 2.74
647 1232 7.617041 AGTTGTGATATTTTCTGAAGGCTAC 57.383 36.000 0.00 0.00 0.00 3.58
674 1557 1.275291 TCTGGAACGTCCCTGTTGATC 59.725 52.381 0.00 0.00 35.03 2.92
712 7237 1.078426 GTCGACCAGGTCCCCAATG 60.078 63.158 14.46 0.00 0.00 2.82
841 8888 1.374758 GAGGGAGCGAGTTGTGTGG 60.375 63.158 0.00 0.00 0.00 4.17
856 8903 2.666317 GAGAGGGAAGAAGAGGAGAGG 58.334 57.143 0.00 0.00 0.00 3.69
868 8915 2.119611 TGGTGCGAGGAGAGGGAA 59.880 61.111 0.00 0.00 0.00 3.97
932 9016 3.444742 CACTGATGCCACCATGTTATGTT 59.555 43.478 0.00 0.00 0.00 2.71
938 9030 1.679977 GCCACTGATGCCACCATGT 60.680 57.895 0.00 0.00 0.00 3.21
1046 9138 2.974489 ATGAAGACGTCGCGGTCGT 61.974 57.895 24.28 24.28 44.27 4.34
1251 9349 0.464916 AAAACTTTCCTCGGCCACGT 60.465 50.000 2.24 0.00 41.85 4.49
1274 9372 4.093998 CAGAATTCAGACCTTGTCCATTCG 59.906 45.833 8.44 0.00 33.24 3.34
1286 9384 6.064846 TGTTGCTTTCTTCAGAATTCAGAC 57.935 37.500 8.44 0.00 33.54 3.51
1304 9402 6.148480 ACTGTTCTTCAGAATACAGATGTTGC 59.852 38.462 22.95 0.00 46.27 4.17
1327 9452 2.416972 GCCGAACCAGAAAGTATCGACT 60.417 50.000 0.00 0.00 37.59 4.18
1345 9470 2.507992 CTTGAGAGACGCTGGCCG 60.508 66.667 0.00 0.00 44.21 6.13
1382 9516 1.395045 CGCACCTGATAGCTCCTCCA 61.395 60.000 0.00 0.00 0.00 3.86
1427 9571 3.336568 ACCTGATGCTGCCCTGCT 61.337 61.111 0.00 0.00 0.00 4.24
1448 9592 1.422977 TTGGGAAGCTACAGGCACCA 61.423 55.000 0.00 0.00 44.79 4.17
1467 9630 0.892755 CAGCTTGCCATGGACACATT 59.107 50.000 18.40 0.00 34.35 2.71
1487 9650 3.827634 CCATCCGGGCAGCTTAAC 58.172 61.111 0.00 0.00 0.00 2.01
1539 9703 1.985447 AATTCATCGGCACAGCGCAG 61.985 55.000 11.47 3.33 45.17 5.18
1632 9800 0.608640 CGAGCTACCCCAACTGAAGT 59.391 55.000 0.00 0.00 0.00 3.01
1762 9930 9.520204 CGCCTTATTTGAATTGACTGAATAATT 57.480 29.630 0.00 0.00 0.00 1.40
1763 9931 8.686334 ACGCCTTATTTGAATTGACTGAATAAT 58.314 29.630 0.00 0.00 0.00 1.28
1764 9932 8.050778 ACGCCTTATTTGAATTGACTGAATAA 57.949 30.769 0.00 0.00 0.00 1.40
1765 9933 7.624360 ACGCCTTATTTGAATTGACTGAATA 57.376 32.000 0.00 0.00 0.00 1.75
1766 9934 6.515272 ACGCCTTATTTGAATTGACTGAAT 57.485 33.333 0.00 0.00 0.00 2.57
1767 9935 5.957842 ACGCCTTATTTGAATTGACTGAA 57.042 34.783 0.00 0.00 0.00 3.02
1768 9936 7.047891 AGATACGCCTTATTTGAATTGACTGA 58.952 34.615 0.00 0.00 0.00 3.41
1769 9937 7.251704 AGATACGCCTTATTTGAATTGACTG 57.748 36.000 0.00 0.00 0.00 3.51
1770 9938 7.336931 ACAAGATACGCCTTATTTGAATTGACT 59.663 33.333 0.00 0.00 0.00 3.41
1771 9939 7.472543 ACAAGATACGCCTTATTTGAATTGAC 58.527 34.615 0.00 0.00 0.00 3.18
1772 9940 7.624360 ACAAGATACGCCTTATTTGAATTGA 57.376 32.000 0.00 0.00 0.00 2.57
1773 9941 7.967854 TCAACAAGATACGCCTTATTTGAATTG 59.032 33.333 0.00 0.00 30.63 2.32
1774 9942 8.050778 TCAACAAGATACGCCTTATTTGAATT 57.949 30.769 0.00 0.00 30.63 2.17
1775 9943 7.624360 TCAACAAGATACGCCTTATTTGAAT 57.376 32.000 0.00 0.00 30.63 2.57
1776 9944 7.441890 TTCAACAAGATACGCCTTATTTGAA 57.558 32.000 12.56 12.56 36.28 2.69
1777 9945 6.403200 GCTTCAACAAGATACGCCTTATTTGA 60.403 38.462 0.00 0.00 31.18 2.69
1778 9946 5.739161 GCTTCAACAAGATACGCCTTATTTG 59.261 40.000 0.00 0.00 0.00 2.32
1779 9947 5.163652 GGCTTCAACAAGATACGCCTTATTT 60.164 40.000 0.00 0.00 33.89 1.40
1780 9948 4.335594 GGCTTCAACAAGATACGCCTTATT 59.664 41.667 0.00 0.00 33.89 1.40
1781 9949 3.877508 GGCTTCAACAAGATACGCCTTAT 59.122 43.478 0.00 0.00 33.89 1.73
1782 9950 3.267483 GGCTTCAACAAGATACGCCTTA 58.733 45.455 0.00 0.00 33.89 2.69
1783 9951 2.084546 GGCTTCAACAAGATACGCCTT 58.915 47.619 0.00 0.00 33.89 4.35
1784 9952 1.003118 TGGCTTCAACAAGATACGCCT 59.997 47.619 0.00 0.00 36.19 5.52
1785 9953 1.448985 TGGCTTCAACAAGATACGCC 58.551 50.000 0.00 0.00 35.93 5.68
1786 9954 3.764885 ATTGGCTTCAACAAGATACGC 57.235 42.857 0.00 0.00 32.63 4.42
1787 9955 8.826710 TCTATTTATTGGCTTCAACAAGATACG 58.173 33.333 0.00 0.00 32.63 3.06
1789 9957 8.840321 GCTCTATTTATTGGCTTCAACAAGATA 58.160 33.333 0.00 0.00 32.63 1.98
1790 9958 7.559170 AGCTCTATTTATTGGCTTCAACAAGAT 59.441 33.333 0.00 0.00 32.63 2.40
1791 9959 6.886459 AGCTCTATTTATTGGCTTCAACAAGA 59.114 34.615 0.00 0.00 32.63 3.02
1792 9960 6.971184 CAGCTCTATTTATTGGCTTCAACAAG 59.029 38.462 0.00 0.00 32.63 3.16
1793 9961 6.658816 TCAGCTCTATTTATTGGCTTCAACAA 59.341 34.615 0.00 0.00 32.63 2.83
1794 9962 6.179756 TCAGCTCTATTTATTGGCTTCAACA 58.820 36.000 0.00 0.00 32.63 3.33
1795 9963 6.238593 CCTCAGCTCTATTTATTGGCTTCAAC 60.239 42.308 0.00 0.00 32.63 3.18
1796 9964 5.824624 CCTCAGCTCTATTTATTGGCTTCAA 59.175 40.000 0.00 0.00 34.56 2.69
1797 9965 5.104360 ACCTCAGCTCTATTTATTGGCTTCA 60.104 40.000 0.00 0.00 0.00 3.02
1798 9966 5.372373 ACCTCAGCTCTATTTATTGGCTTC 58.628 41.667 0.00 0.00 0.00 3.86
1799 9967 5.379706 ACCTCAGCTCTATTTATTGGCTT 57.620 39.130 0.00 0.00 0.00 4.35
1800 9968 5.379706 AACCTCAGCTCTATTTATTGGCT 57.620 39.130 0.00 0.00 0.00 4.75
1801 9969 8.097662 ACTATAACCTCAGCTCTATTTATTGGC 58.902 37.037 0.00 0.00 0.00 4.52
1807 9975 9.549078 GCTTTAACTATAACCTCAGCTCTATTT 57.451 33.333 0.00 0.00 0.00 1.40
1808 9976 8.705594 TGCTTTAACTATAACCTCAGCTCTATT 58.294 33.333 0.00 0.00 0.00 1.73
1809 9977 8.251383 TGCTTTAACTATAACCTCAGCTCTAT 57.749 34.615 0.00 0.00 0.00 1.98
1810 9978 7.655521 TGCTTTAACTATAACCTCAGCTCTA 57.344 36.000 0.00 0.00 0.00 2.43
1811 9979 6.546428 TGCTTTAACTATAACCTCAGCTCT 57.454 37.500 0.00 0.00 0.00 4.09
1812 9980 5.235401 GCTGCTTTAACTATAACCTCAGCTC 59.765 44.000 0.00 0.00 36.25 4.09
1813 9981 5.119694 GCTGCTTTAACTATAACCTCAGCT 58.880 41.667 0.00 0.00 36.25 4.24
1814 9982 4.273724 GGCTGCTTTAACTATAACCTCAGC 59.726 45.833 0.00 0.00 37.26 4.26
1815 9983 5.428253 TGGCTGCTTTAACTATAACCTCAG 58.572 41.667 0.00 0.00 0.00 3.35
1816 9984 5.045869 ACTGGCTGCTTTAACTATAACCTCA 60.046 40.000 0.00 0.00 0.00 3.86
1817 9985 5.429130 ACTGGCTGCTTTAACTATAACCTC 58.571 41.667 0.00 0.00 0.00 3.85
1818 9986 5.437191 ACTGGCTGCTTTAACTATAACCT 57.563 39.130 0.00 0.00 0.00 3.50
1819 9987 6.579865 TCTACTGGCTGCTTTAACTATAACC 58.420 40.000 0.00 0.00 0.00 2.85
1820 9988 8.488651 TTTCTACTGGCTGCTTTAACTATAAC 57.511 34.615 0.00 0.00 0.00 1.89
1821 9989 8.943002 GTTTTCTACTGGCTGCTTTAACTATAA 58.057 33.333 0.00 0.00 0.00 0.98
1822 9990 7.551617 GGTTTTCTACTGGCTGCTTTAACTATA 59.448 37.037 0.00 0.00 0.00 1.31
1823 9991 6.374613 GGTTTTCTACTGGCTGCTTTAACTAT 59.625 38.462 0.00 0.00 0.00 2.12
1824 9992 5.704053 GGTTTTCTACTGGCTGCTTTAACTA 59.296 40.000 0.00 0.00 0.00 2.24
1825 9993 4.519350 GGTTTTCTACTGGCTGCTTTAACT 59.481 41.667 0.00 0.00 0.00 2.24
1826 9994 4.277423 TGGTTTTCTACTGGCTGCTTTAAC 59.723 41.667 0.00 0.00 0.00 2.01
1827 9995 4.465886 TGGTTTTCTACTGGCTGCTTTAA 58.534 39.130 0.00 0.00 0.00 1.52
1828 9996 4.093472 TGGTTTTCTACTGGCTGCTTTA 57.907 40.909 0.00 0.00 0.00 1.85
1829 9997 2.944129 TGGTTTTCTACTGGCTGCTTT 58.056 42.857 0.00 0.00 0.00 3.51
1830 9998 2.656947 TGGTTTTCTACTGGCTGCTT 57.343 45.000 0.00 0.00 0.00 3.91
1831 9999 2.656947 TTGGTTTTCTACTGGCTGCT 57.343 45.000 0.00 0.00 0.00 4.24
1832 10000 3.726291 TTTTGGTTTTCTACTGGCTGC 57.274 42.857 0.00 0.00 0.00 5.25
1833 10001 6.981722 AGTTATTTTGGTTTTCTACTGGCTG 58.018 36.000 0.00 0.00 0.00 4.85
1834 10002 7.942894 ACTAGTTATTTTGGTTTTCTACTGGCT 59.057 33.333 0.00 0.00 0.00 4.75
1835 10003 8.107399 ACTAGTTATTTTGGTTTTCTACTGGC 57.893 34.615 0.00 0.00 0.00 4.85
1854 10022 9.780186 ACTCTTTCATGCTTACTTTAACTAGTT 57.220 29.630 13.68 13.68 0.00 2.24
1855 10023 9.780186 AACTCTTTCATGCTTACTTTAACTAGT 57.220 29.630 0.00 0.00 0.00 2.57
1862 10030 9.914131 GGAATTTAACTCTTTCATGCTTACTTT 57.086 29.630 0.00 0.00 0.00 2.66
1863 10031 9.077885 TGGAATTTAACTCTTTCATGCTTACTT 57.922 29.630 0.00 0.00 0.00 2.24
1864 10032 8.635765 TGGAATTTAACTCTTTCATGCTTACT 57.364 30.769 0.00 0.00 0.00 2.24
1865 10033 9.860898 AATGGAATTTAACTCTTTCATGCTTAC 57.139 29.630 0.00 0.00 26.74 2.34
1897 10065 9.590451 GCTTTACCAACATATGTAGTGTAGTAA 57.410 33.333 9.21 6.96 31.81 2.24
1898 10066 8.751242 TGCTTTACCAACATATGTAGTGTAGTA 58.249 33.333 9.21 8.30 0.00 1.82
1899 10067 7.617225 TGCTTTACCAACATATGTAGTGTAGT 58.383 34.615 9.21 2.25 0.00 2.73
1900 10068 8.662781 ATGCTTTACCAACATATGTAGTGTAG 57.337 34.615 9.21 11.64 0.00 2.74
1901 10069 9.456147 AAATGCTTTACCAACATATGTAGTGTA 57.544 29.630 9.21 8.17 0.00 2.90
1902 10070 7.938140 AATGCTTTACCAACATATGTAGTGT 57.062 32.000 9.21 9.13 0.00 3.55
1903 10071 9.716507 GTAAATGCTTTACCAACATATGTAGTG 57.283 33.333 9.21 4.62 39.61 2.74
1919 10087 9.700831 ATCTTCCATAACTTAGGTAAATGCTTT 57.299 29.630 0.00 0.00 0.00 3.51
1920 10088 9.700831 AATCTTCCATAACTTAGGTAAATGCTT 57.299 29.630 0.00 0.00 0.00 3.91
1921 10089 9.343539 GAATCTTCCATAACTTAGGTAAATGCT 57.656 33.333 0.00 0.00 0.00 3.79
1922 10090 9.120538 TGAATCTTCCATAACTTAGGTAAATGC 57.879 33.333 0.00 0.00 0.00 3.56
1982 10150 9.469097 ACACTTCTGTATCTTACTCTATCTTGT 57.531 33.333 0.00 0.00 0.00 3.16
1994 10162 9.057089 CCACTTTCTTTTACACTTCTGTATCTT 57.943 33.333 0.00 0.00 32.70 2.40
1995 10163 8.429641 TCCACTTTCTTTTACACTTCTGTATCT 58.570 33.333 0.00 0.00 32.70 1.98
1996 10164 8.603242 TCCACTTTCTTTTACACTTCTGTATC 57.397 34.615 0.00 0.00 32.70 2.24
1997 10165 9.574516 AATCCACTTTCTTTTACACTTCTGTAT 57.425 29.630 0.00 0.00 32.70 2.29
1998 10166 8.974060 AATCCACTTTCTTTTACACTTCTGTA 57.026 30.769 0.00 0.00 0.00 2.74
1999 10167 7.556275 TGAATCCACTTTCTTTTACACTTCTGT 59.444 33.333 0.00 0.00 0.00 3.41
2000 10168 7.930217 TGAATCCACTTTCTTTTACACTTCTG 58.070 34.615 0.00 0.00 0.00 3.02
2001 10169 8.697507 ATGAATCCACTTTCTTTTACACTTCT 57.302 30.769 0.00 0.00 0.00 2.85
2002 10170 8.567948 TGATGAATCCACTTTCTTTTACACTTC 58.432 33.333 0.00 0.00 0.00 3.01
2003 10171 8.463930 TGATGAATCCACTTTCTTTTACACTT 57.536 30.769 0.00 0.00 0.00 3.16
2004 10172 7.939039 TCTGATGAATCCACTTTCTTTTACACT 59.061 33.333 0.00 0.00 0.00 3.55
2005 10173 8.099364 TCTGATGAATCCACTTTCTTTTACAC 57.901 34.615 0.00 0.00 0.00 2.90
2006 10174 8.733458 CATCTGATGAATCCACTTTCTTTTACA 58.267 33.333 12.27 0.00 0.00 2.41
2007 10175 8.950210 TCATCTGATGAATCCACTTTCTTTTAC 58.050 33.333 17.56 0.00 36.11 2.01
2008 10176 9.690913 ATCATCTGATGAATCCACTTTCTTTTA 57.309 29.630 22.91 0.00 43.50 1.52
2009 10177 8.591114 ATCATCTGATGAATCCACTTTCTTTT 57.409 30.769 22.91 0.04 43.50 2.27
2010 10178 9.118300 GTATCATCTGATGAATCCACTTTCTTT 57.882 33.333 22.91 5.74 43.50 2.52
2011 10179 8.270030 TGTATCATCTGATGAATCCACTTTCTT 58.730 33.333 22.91 5.92 43.50 2.52
2012 10180 7.799081 TGTATCATCTGATGAATCCACTTTCT 58.201 34.615 22.91 6.40 43.50 2.52
2013 10181 8.504815 CATGTATCATCTGATGAATCCACTTTC 58.495 37.037 22.91 4.94 43.50 2.62
2014 10182 8.215736 TCATGTATCATCTGATGAATCCACTTT 58.784 33.333 22.91 7.74 43.50 2.66
2015 10183 7.742767 TCATGTATCATCTGATGAATCCACTT 58.257 34.615 22.91 13.35 43.50 3.16
2016 10184 7.016366 ACTCATGTATCATCTGATGAATCCACT 59.984 37.037 22.91 9.09 43.50 4.00
2017 10185 7.160049 ACTCATGTATCATCTGATGAATCCAC 58.840 38.462 22.91 17.31 43.50 4.02
2018 10186 7.312415 ACTCATGTATCATCTGATGAATCCA 57.688 36.000 22.91 18.37 43.50 3.41
2019 10187 6.817641 GGACTCATGTATCATCTGATGAATCC 59.182 42.308 22.91 14.01 43.50 3.01
2020 10188 6.817641 GGGACTCATGTATCATCTGATGAATC 59.182 42.308 22.91 17.87 43.50 2.52
2021 10189 6.501102 AGGGACTCATGTATCATCTGATGAAT 59.499 38.462 22.91 10.45 43.50 2.57
2022 10190 5.842874 AGGGACTCATGTATCATCTGATGAA 59.157 40.000 22.91 8.56 43.50 2.57
2023 10191 5.400870 AGGGACTCATGTATCATCTGATGA 58.599 41.667 21.55 21.55 44.55 2.92
2024 10192 5.741962 AGGGACTCATGTATCATCTGATG 57.258 43.478 11.42 11.42 36.05 3.07
2025 10193 8.446714 AATTAGGGACTCATGTATCATCTGAT 57.553 34.615 0.00 0.00 41.75 2.90
2026 10194 7.038729 GGAATTAGGGACTCATGTATCATCTGA 60.039 40.741 0.00 0.00 41.75 3.27
2027 10195 7.102346 GGAATTAGGGACTCATGTATCATCTG 58.898 42.308 0.00 0.00 41.75 2.90
2028 10196 6.071108 CGGAATTAGGGACTCATGTATCATCT 60.071 42.308 0.00 0.00 41.75 2.90
2029 10197 6.071334 TCGGAATTAGGGACTCATGTATCATC 60.071 42.308 0.00 0.00 41.75 2.92
2030 10198 5.780282 TCGGAATTAGGGACTCATGTATCAT 59.220 40.000 0.00 0.00 41.75 2.45
2031 10199 5.144832 TCGGAATTAGGGACTCATGTATCA 58.855 41.667 0.00 0.00 41.75 2.15
2032 10200 5.723672 TCGGAATTAGGGACTCATGTATC 57.276 43.478 0.00 0.00 41.75 2.24
2033 10201 6.270000 TGATTCGGAATTAGGGACTCATGTAT 59.730 38.462 4.47 0.00 41.75 2.29
2034 10202 5.600898 TGATTCGGAATTAGGGACTCATGTA 59.399 40.000 4.47 0.00 41.75 2.29
2035 10203 4.408921 TGATTCGGAATTAGGGACTCATGT 59.591 41.667 4.47 0.00 41.75 3.21
2036 10204 4.960938 TGATTCGGAATTAGGGACTCATG 58.039 43.478 4.47 0.00 41.75 3.07
2037 10205 5.366768 TCTTGATTCGGAATTAGGGACTCAT 59.633 40.000 4.47 0.00 41.75 2.90
2038 10206 4.714802 TCTTGATTCGGAATTAGGGACTCA 59.285 41.667 4.47 0.00 41.75 3.41
2039 10207 5.069251 TCTCTTGATTCGGAATTAGGGACTC 59.931 44.000 4.47 0.00 41.75 3.36
2040 10208 4.962995 TCTCTTGATTCGGAATTAGGGACT 59.037 41.667 4.47 0.00 46.37 3.85
2041 10209 5.277857 TCTCTTGATTCGGAATTAGGGAC 57.722 43.478 4.47 0.00 0.00 4.46
2042 10210 6.500589 AATCTCTTGATTCGGAATTAGGGA 57.499 37.500 14.74 14.74 38.42 4.20
2043 10211 6.543831 ACAAATCTCTTGATTCGGAATTAGGG 59.456 38.462 4.47 6.09 41.62 3.53
2044 10212 7.559590 ACAAATCTCTTGATTCGGAATTAGG 57.440 36.000 4.47 1.48 41.62 2.69
2045 10213 8.454106 ACAACAAATCTCTTGATTCGGAATTAG 58.546 33.333 4.47 6.14 41.62 1.73
2046 10214 8.236586 CACAACAAATCTCTTGATTCGGAATTA 58.763 33.333 4.47 0.00 41.62 1.40
2047 10215 7.086376 CACAACAAATCTCTTGATTCGGAATT 58.914 34.615 4.47 0.00 41.62 2.17
2048 10216 6.349611 CCACAACAAATCTCTTGATTCGGAAT 60.350 38.462 2.19 2.19 41.62 3.01
2049 10217 5.048782 CCACAACAAATCTCTTGATTCGGAA 60.049 40.000 0.00 0.00 41.62 4.30
2050 10218 4.455533 CCACAACAAATCTCTTGATTCGGA 59.544 41.667 0.00 0.00 41.62 4.55
2051 10219 4.455533 TCCACAACAAATCTCTTGATTCGG 59.544 41.667 0.00 0.00 41.62 4.30
2052 10220 5.611796 TCCACAACAAATCTCTTGATTCG 57.388 39.130 0.00 0.00 41.62 3.34
2053 10221 8.706035 CAAATTCCACAACAAATCTCTTGATTC 58.294 33.333 0.00 0.00 41.62 2.52
2054 10222 8.206189 ACAAATTCCACAACAAATCTCTTGATT 58.794 29.630 0.00 0.00 44.08 2.57
2055 10223 7.729116 ACAAATTCCACAACAAATCTCTTGAT 58.271 30.769 0.00 0.00 33.70 2.57
2056 10224 7.111247 ACAAATTCCACAACAAATCTCTTGA 57.889 32.000 0.00 0.00 0.00 3.02
2057 10225 6.979817 TGACAAATTCCACAACAAATCTCTTG 59.020 34.615 0.00 0.00 0.00 3.02
2058 10226 7.111247 TGACAAATTCCACAACAAATCTCTT 57.889 32.000 0.00 0.00 0.00 2.85
2059 10227 6.713762 TGACAAATTCCACAACAAATCTCT 57.286 33.333 0.00 0.00 0.00 3.10
2060 10228 6.980397 AGTTGACAAATTCCACAACAAATCTC 59.020 34.615 17.38 0.00 43.06 2.75
2061 10229 6.757947 CAGTTGACAAATTCCACAACAAATCT 59.242 34.615 17.38 1.89 43.06 2.40
2062 10230 6.756074 TCAGTTGACAAATTCCACAACAAATC 59.244 34.615 17.38 0.00 43.06 2.17
2063 10231 6.638610 TCAGTTGACAAATTCCACAACAAAT 58.361 32.000 17.38 0.00 43.06 2.32
2064 10232 6.030548 TCAGTTGACAAATTCCACAACAAA 57.969 33.333 17.38 7.52 43.06 2.83
2065 10233 5.184864 ACTCAGTTGACAAATTCCACAACAA 59.815 36.000 17.38 8.88 43.06 2.83
2066 10234 4.704540 ACTCAGTTGACAAATTCCACAACA 59.295 37.500 17.38 4.25 43.06 3.33
2067 10235 5.248870 ACTCAGTTGACAAATTCCACAAC 57.751 39.130 0.00 0.00 41.61 3.32
2068 10236 7.122055 ACTTTACTCAGTTGACAAATTCCACAA 59.878 33.333 0.00 0.00 0.00 3.33
2069 10237 6.601613 ACTTTACTCAGTTGACAAATTCCACA 59.398 34.615 0.00 0.00 0.00 4.17
2070 10238 7.027778 ACTTTACTCAGTTGACAAATTCCAC 57.972 36.000 0.00 0.00 0.00 4.02
2071 10239 8.740123 TTACTTTACTCAGTTGACAAATTCCA 57.260 30.769 0.00 0.00 0.00 3.53
2100 10268 9.892444 TGGGGTTAGATGATCTAGTTCTTAATA 57.108 33.333 2.03 0.00 29.56 0.98
2101 10269 8.798975 TGGGGTTAGATGATCTAGTTCTTAAT 57.201 34.615 2.03 0.00 29.56 1.40
2102 10270 8.798975 ATGGGGTTAGATGATCTAGTTCTTAA 57.201 34.615 2.03 0.00 29.56 1.85
2103 10271 8.651389 CAATGGGGTTAGATGATCTAGTTCTTA 58.349 37.037 2.03 0.00 29.56 2.10
2104 10272 7.348274 TCAATGGGGTTAGATGATCTAGTTCTT 59.652 37.037 2.03 0.00 29.56 2.52
2105 10273 6.846505 TCAATGGGGTTAGATGATCTAGTTCT 59.153 38.462 2.03 0.00 29.56 3.01
2106 10274 7.067496 TCAATGGGGTTAGATGATCTAGTTC 57.933 40.000 2.03 0.00 29.56 3.01
2107 10275 7.451731 TTCAATGGGGTTAGATGATCTAGTT 57.548 36.000 2.03 0.00 29.56 2.24
2108 10276 7.293299 TCATTCAATGGGGTTAGATGATCTAGT 59.707 37.037 2.03 0.00 29.56 2.57
2109 10277 7.683578 TCATTCAATGGGGTTAGATGATCTAG 58.316 38.462 2.03 0.00 29.56 2.43
2110 10278 7.631510 TCATTCAATGGGGTTAGATGATCTA 57.368 36.000 0.00 0.00 0.00 1.98
2111 10279 6.520021 TCATTCAATGGGGTTAGATGATCT 57.480 37.500 0.00 0.00 0.00 2.75
2112 10280 7.587037 TTTCATTCAATGGGGTTAGATGATC 57.413 36.000 0.00 0.00 0.00 2.92
2113 10281 7.976414 TTTTCATTCAATGGGGTTAGATGAT 57.024 32.000 0.00 0.00 0.00 2.45
2114 10282 7.789202 TTTTTCATTCAATGGGGTTAGATGA 57.211 32.000 0.00 0.00 0.00 2.92
2144 10312 9.631257 ACTCAAAAATTTCCCTGAAAATTGAAT 57.369 25.926 12.57 5.18 38.51 2.57
2145 10313 8.891720 CACTCAAAAATTTCCCTGAAAATTGAA 58.108 29.630 12.57 0.00 38.51 2.69
2146 10314 8.046107 ACACTCAAAAATTTCCCTGAAAATTGA 58.954 29.630 0.00 11.68 38.51 2.57
2147 10315 8.212317 ACACTCAAAAATTTCCCTGAAAATTG 57.788 30.769 0.00 1.43 38.51 2.32
2148 10316 8.676401 CAACACTCAAAAATTTCCCTGAAAATT 58.324 29.630 0.00 0.00 39.83 1.82
2149 10317 7.828717 ACAACACTCAAAAATTTCCCTGAAAAT 59.171 29.630 0.00 0.00 35.11 1.82
2150 10318 7.164803 ACAACACTCAAAAATTTCCCTGAAAA 58.835 30.769 0.00 0.00 35.11 2.29
2151 10319 6.706295 ACAACACTCAAAAATTTCCCTGAAA 58.294 32.000 0.00 0.00 35.94 2.69
2152 10320 6.293004 ACAACACTCAAAAATTTCCCTGAA 57.707 33.333 0.00 0.00 0.00 3.02
2153 10321 5.930837 ACAACACTCAAAAATTTCCCTGA 57.069 34.783 0.00 0.00 0.00 3.86
2154 10322 5.523552 GGAACAACACTCAAAAATTTCCCTG 59.476 40.000 0.00 0.00 0.00 4.45
2155 10323 5.396324 GGGAACAACACTCAAAAATTTCCCT 60.396 40.000 8.54 0.00 45.18 4.20
2156 10324 4.814234 GGGAACAACACTCAAAAATTTCCC 59.186 41.667 0.00 0.00 43.13 3.97
2157 10325 4.814234 GGGGAACAACACTCAAAAATTTCC 59.186 41.667 0.00 0.00 0.00 3.13
2158 10326 5.670485 AGGGGAACAACACTCAAAAATTTC 58.330 37.500 0.00 0.00 0.00 2.17
2159 10327 5.692115 AGGGGAACAACACTCAAAAATTT 57.308 34.783 0.00 0.00 0.00 1.82
2160 10328 6.800072 TTAGGGGAACAACACTCAAAAATT 57.200 33.333 0.00 0.00 0.00 1.82
2161 10329 6.800072 TTTAGGGGAACAACACTCAAAAAT 57.200 33.333 0.00 0.00 0.00 1.82
2162 10330 6.800072 ATTTAGGGGAACAACACTCAAAAA 57.200 33.333 0.00 0.00 0.00 1.94
2163 10331 6.800072 AATTTAGGGGAACAACACTCAAAA 57.200 33.333 0.00 0.00 0.00 2.44
2164 10332 6.800072 AAATTTAGGGGAACAACACTCAAA 57.200 33.333 0.00 0.00 0.00 2.69
2165 10333 6.155393 ACAAAATTTAGGGGAACAACACTCAA 59.845 34.615 0.00 0.00 0.00 3.02
2166 10334 5.659079 ACAAAATTTAGGGGAACAACACTCA 59.341 36.000 0.00 0.00 0.00 3.41
2167 10335 6.156748 ACAAAATTTAGGGGAACAACACTC 57.843 37.500 0.00 0.00 0.00 3.51
2168 10336 7.663043 TTACAAAATTTAGGGGAACAACACT 57.337 32.000 0.00 0.00 0.00 3.55
2169 10337 7.929245 ACATTACAAAATTTAGGGGAACAACAC 59.071 33.333 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.