Multiple sequence alignment - TraesCS2A01G454300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G454300 chr2A 100.000 2291 0 0 1 2291 703290243 703292533 0.000000e+00 4231.0
1 TraesCS2A01G454300 chr2A 93.038 474 15 2 877 1332 703282278 703282751 0.000000e+00 676.0
2 TraesCS2A01G454300 chr2A 94.359 390 18 4 949 1336 703337542 703337929 1.520000e-166 595.0
3 TraesCS2A01G454300 chr2A 93.916 263 14 1 585 845 703282018 703282280 1.650000e-106 396.0
4 TraesCS2A01G454300 chr2A 80.617 454 59 20 857 1295 703448078 703448517 7.890000e-85 324.0
5 TraesCS2A01G454300 chr2A 84.384 333 41 7 1945 2272 703209279 703209605 1.320000e-82 316.0
6 TraesCS2A01G454300 chr2A 82.571 350 46 11 1602 1944 703208777 703209118 6.190000e-76 294.0
7 TraesCS2A01G454300 chr2A 93.130 131 9 0 660 790 703337222 703337352 2.320000e-45 193.0
8 TraesCS2A01G454300 chr2A 85.802 162 11 7 563 722 703122437 703122588 6.550000e-36 161.0
9 TraesCS2A01G454300 chr2A 83.030 165 21 5 563 722 703349901 703350063 2.370000e-30 143.0
10 TraesCS2A01G454300 chr2D 90.660 1788 80 32 528 2289 562734638 562736364 0.000000e+00 2296.0
11 TraesCS2A01G454300 chr2D 89.220 1141 50 26 528 1623 562785087 562786199 0.000000e+00 1358.0
12 TraesCS2A01G454300 chr2D 94.409 626 24 6 1668 2291 562786198 562786814 0.000000e+00 952.0
13 TraesCS2A01G454300 chr2D 81.836 1013 106 44 925 1885 562587874 562588860 0.000000e+00 780.0
14 TraesCS2A01G454300 chr2D 83.560 736 65 24 911 1609 562839588 562840304 2.480000e-179 638.0
15 TraesCS2A01G454300 chr2D 85.535 636 49 15 861 1469 562845225 562845844 1.930000e-175 625.0
16 TraesCS2A01G454300 chr2D 87.705 488 34 10 911 1384 562807825 562808300 1.550000e-151 545.0
17 TraesCS2A01G454300 chr2D 81.988 322 45 10 1945 2261 562687534 562687847 6.280000e-66 261.0
18 TraesCS2A01G454300 chr2D 90.196 204 12 3 655 856 562753689 562753886 2.260000e-65 259.0
19 TraesCS2A01G454300 chr2D 92.593 162 8 4 563 722 562585166 562585325 1.770000e-56 230.0
20 TraesCS2A01G454300 chr2D 83.962 212 21 10 1666 1873 562685752 562685954 8.350000e-45 191.0
21 TraesCS2A01G454300 chr2D 87.500 136 17 0 562 697 562684373 562684508 8.470000e-35 158.0
22 TraesCS2A01G454300 chr2D 95.402 87 4 0 704 790 562807540 562807626 3.070000e-29 139.0
23 TraesCS2A01G454300 chr2D 91.358 81 6 1 784 864 562845082 562845161 2.410000e-20 110.0
24 TraesCS2A01G454300 chr2D 92.727 55 4 0 868 922 562807767 562807821 1.890000e-11 80.5
25 TraesCS2A01G454300 chr2B 86.659 817 37 24 592 1353 673092575 673093374 0.000000e+00 839.0
26 TraesCS2A01G454300 chr2B 80.901 1021 115 52 923 1911 672797003 672796031 0.000000e+00 732.0
27 TraesCS2A01G454300 chr2B 92.991 428 27 1 949 1376 672646529 672646953 2.500000e-174 621.0
28 TraesCS2A01G454300 chr2B 88.170 448 40 5 1 437 254631193 254630748 2.610000e-144 521.0
29 TraesCS2A01G454300 chr2B 81.152 573 64 22 1404 1944 672669026 672669586 9.790000e-114 420.0
30 TraesCS2A01G454300 chr2B 81.306 444 56 14 865 1295 673595372 673595801 3.650000e-88 335.0
31 TraesCS2A01G454300 chr2B 87.543 289 18 6 592 864 673050437 673050723 3.670000e-83 318.0
32 TraesCS2A01G454300 chr2B 82.661 248 34 7 1695 1936 673051573 673051817 6.410000e-51 211.0
33 TraesCS2A01G454300 chr2B 90.062 161 14 2 563 722 672828398 672828239 8.290000e-50 207.0
34 TraesCS2A01G454300 chr2B 85.128 195 22 4 2083 2273 672823665 672823474 2.320000e-45 193.0
35 TraesCS2A01G454300 chr2B 91.270 126 10 1 562 687 672797625 672797501 1.090000e-38 171.0
36 TraesCS2A01G454300 chr2B 91.089 101 9 0 690 790 672776507 672776407 1.100000e-28 137.0
37 TraesCS2A01G454300 chr2B 86.957 69 6 3 797 864 672797252 672797186 8.780000e-10 75.0
38 TraesCS2A01G454300 chr2B 97.674 43 1 0 562 604 673002341 673002383 8.780000e-10 75.0
39 TraesCS2A01G454300 chr2B 86.957 69 5 3 857 922 673628513 673628580 8.780000e-10 75.0
40 TraesCS2A01G454300 chr7A 91.741 448 25 7 1 437 54982116 54982562 1.500000e-171 612.0
41 TraesCS2A01G454300 chr7A 91.741 448 24 2 1 437 40704546 40704991 5.410000e-171 610.0
42 TraesCS2A01G454300 chr5A 91.537 449 26 2 1 438 26958232 26957785 1.950000e-170 608.0
43 TraesCS2A01G454300 chr5A 88.419 449 40 7 1 438 387396314 387396761 4.330000e-147 531.0
44 TraesCS2A01G454300 chr6A 91.295 448 28 1 1 437 587759789 587760236 3.260000e-168 601.0
45 TraesCS2A01G454300 chr6A 91.071 448 29 1 1 437 256599451 256599898 1.520000e-166 595.0
46 TraesCS2A01G454300 chr4B 88.839 448 36 5 1 436 587776048 587776493 2.590000e-149 538.0
47 TraesCS2A01G454300 chr4B 86.331 278 26 4 170 435 541129583 541129306 2.230000e-75 292.0
48 TraesCS2A01G454300 chr3B 88.170 448 40 3 1 437 598984059 598984504 2.610000e-144 521.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G454300 chr2A 703290243 703292533 2290 False 4231.000000 4231 100.000000 1 2291 1 chr2A.!!$F2 2290
1 TraesCS2A01G454300 chr2A 703282018 703282751 733 False 536.000000 676 93.477000 585 1332 2 chr2A.!!$F6 747
2 TraesCS2A01G454300 chr2A 703337222 703337929 707 False 394.000000 595 93.744500 660 1336 2 chr2A.!!$F7 676
3 TraesCS2A01G454300 chr2A 703208777 703209605 828 False 305.000000 316 83.477500 1602 2272 2 chr2A.!!$F5 670
4 TraesCS2A01G454300 chr2D 562734638 562736364 1726 False 2296.000000 2296 90.660000 528 2289 1 chr2D.!!$F1 1761
5 TraesCS2A01G454300 chr2D 562785087 562786814 1727 False 1155.000000 1358 91.814500 528 2291 2 chr2D.!!$F6 1763
6 TraesCS2A01G454300 chr2D 562839588 562840304 716 False 638.000000 638 83.560000 911 1609 1 chr2D.!!$F3 698
7 TraesCS2A01G454300 chr2D 562585166 562588860 3694 False 505.000000 780 87.214500 563 1885 2 chr2D.!!$F4 1322
8 TraesCS2A01G454300 chr2D 562845082 562845844 762 False 367.500000 625 88.446500 784 1469 2 chr2D.!!$F8 685
9 TraesCS2A01G454300 chr2D 562807540 562808300 760 False 254.833333 545 91.944667 704 1384 3 chr2D.!!$F7 680
10 TraesCS2A01G454300 chr2D 562684373 562687847 3474 False 203.333333 261 84.483333 562 2261 3 chr2D.!!$F5 1699
11 TraesCS2A01G454300 chr2B 673092575 673093374 799 False 839.000000 839 86.659000 592 1353 1 chr2B.!!$F4 761
12 TraesCS2A01G454300 chr2B 672669026 672669586 560 False 420.000000 420 81.152000 1404 1944 1 chr2B.!!$F2 540
13 TraesCS2A01G454300 chr2B 672796031 672797625 1594 True 326.000000 732 86.376000 562 1911 3 chr2B.!!$R5 1349
14 TraesCS2A01G454300 chr2B 673050437 673051817 1380 False 264.500000 318 85.102000 592 1936 2 chr2B.!!$F7 1344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.027586 GCAATATTGTCACGGCGGAC 59.972 55.0 16.61 16.09 38.29 4.79 F
179 180 0.036022 GATGGCCTCCCTACTCATGC 59.964 60.0 3.32 0.00 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1012 3547 0.327591 AAGAAGAAGGAGCAGGCCAG 59.672 55.0 5.01 0.0 0.0 4.85 R
1599 4241 0.878416 CCTTGGCCATTTCGTTTCGA 59.122 50.0 6.09 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.109132 CGCACCTCCTTTTCCAATGC 60.109 55.000 0.00 0.00 0.00 3.56
20 21 0.247460 GCACCTCCTTTTCCAATGCC 59.753 55.000 0.00 0.00 0.00 4.40
21 22 0.527565 CACCTCCTTTTCCAATGCCG 59.472 55.000 0.00 0.00 0.00 5.69
22 23 0.404040 ACCTCCTTTTCCAATGCCGA 59.596 50.000 0.00 0.00 0.00 5.54
23 24 1.005924 ACCTCCTTTTCCAATGCCGAT 59.994 47.619 0.00 0.00 0.00 4.18
24 25 2.102578 CCTCCTTTTCCAATGCCGATT 58.897 47.619 0.00 0.00 0.00 3.34
25 26 2.497273 CCTCCTTTTCCAATGCCGATTT 59.503 45.455 0.00 0.00 0.00 2.17
26 27 3.055891 CCTCCTTTTCCAATGCCGATTTT 60.056 43.478 0.00 0.00 0.00 1.82
27 28 4.176271 CTCCTTTTCCAATGCCGATTTTC 58.824 43.478 0.00 0.00 0.00 2.29
28 29 2.923020 CCTTTTCCAATGCCGATTTTCG 59.077 45.455 0.00 0.00 40.07 3.46
38 39 3.465307 CGATTTTCGGTTGCGGTTT 57.535 47.368 0.00 0.00 36.00 3.27
39 40 1.049251 CGATTTTCGGTTGCGGTTTG 58.951 50.000 0.00 0.00 36.00 2.93
40 41 1.414378 GATTTTCGGTTGCGGTTTGG 58.586 50.000 0.00 0.00 0.00 3.28
41 42 1.001158 GATTTTCGGTTGCGGTTTGGA 60.001 47.619 0.00 0.00 0.00 3.53
42 43 0.815734 TTTTCGGTTGCGGTTTGGAA 59.184 45.000 0.00 0.00 0.00 3.53
43 44 1.033574 TTTCGGTTGCGGTTTGGAAT 58.966 45.000 0.00 0.00 0.00 3.01
44 45 0.312416 TTCGGTTGCGGTTTGGAATG 59.688 50.000 0.00 0.00 0.00 2.67
45 46 1.732683 CGGTTGCGGTTTGGAATGC 60.733 57.895 0.00 0.00 0.00 3.56
46 47 1.732683 GGTTGCGGTTTGGAATGCG 60.733 57.895 0.00 0.00 0.00 4.73
47 48 1.732683 GTTGCGGTTTGGAATGCGG 60.733 57.895 0.00 0.00 0.00 5.69
48 49 2.196925 TTGCGGTTTGGAATGCGGT 61.197 52.632 0.00 0.00 0.00 5.68
49 50 0.889638 TTGCGGTTTGGAATGCGGTA 60.890 50.000 0.00 0.00 0.00 4.02
50 51 0.889638 TGCGGTTTGGAATGCGGTAA 60.890 50.000 0.00 0.00 0.00 2.85
51 52 0.241481 GCGGTTTGGAATGCGGTAAA 59.759 50.000 0.00 0.00 0.00 2.01
52 53 1.731098 GCGGTTTGGAATGCGGTAAAG 60.731 52.381 0.00 0.00 0.00 1.85
53 54 1.135517 CGGTTTGGAATGCGGTAAAGG 60.136 52.381 0.00 0.00 0.00 3.11
54 55 1.403647 GGTTTGGAATGCGGTAAAGGC 60.404 52.381 0.00 0.00 0.00 4.35
55 56 0.523966 TTTGGAATGCGGTAAAGGCG 59.476 50.000 0.00 0.00 0.00 5.52
56 57 0.321741 TTGGAATGCGGTAAAGGCGA 60.322 50.000 0.00 0.00 0.00 5.54
57 58 0.321741 TGGAATGCGGTAAAGGCGAA 60.322 50.000 0.00 0.00 0.00 4.70
58 59 0.377203 GGAATGCGGTAAAGGCGAAG 59.623 55.000 0.00 0.00 0.00 3.79
59 60 1.365699 GAATGCGGTAAAGGCGAAGA 58.634 50.000 0.00 0.00 0.00 2.87
60 61 1.940613 GAATGCGGTAAAGGCGAAGAT 59.059 47.619 0.00 0.00 0.00 2.40
61 62 1.583054 ATGCGGTAAAGGCGAAGATC 58.417 50.000 0.00 0.00 0.00 2.75
62 63 0.804544 TGCGGTAAAGGCGAAGATCG 60.805 55.000 0.00 0.00 43.89 3.69
63 64 1.488261 GCGGTAAAGGCGAAGATCGG 61.488 60.000 1.64 0.00 40.84 4.18
64 65 0.874607 CGGTAAAGGCGAAGATCGGG 60.875 60.000 1.64 0.00 40.84 5.14
65 66 1.158484 GGTAAAGGCGAAGATCGGGC 61.158 60.000 1.64 0.79 40.84 6.13
69 70 4.951963 GGCGAAGATCGGGCCGAG 62.952 72.222 33.82 20.51 40.84 4.63
71 72 4.207281 CGAAGATCGGGCCGAGCA 62.207 66.667 40.91 17.96 45.07 4.26
72 73 2.186903 GAAGATCGGGCCGAGCAA 59.813 61.111 40.91 17.56 45.07 3.91
73 74 1.227674 GAAGATCGGGCCGAGCAAT 60.228 57.895 40.91 30.51 45.07 3.56
74 75 0.033504 GAAGATCGGGCCGAGCAATA 59.966 55.000 40.91 16.33 45.07 1.90
75 76 0.687354 AAGATCGGGCCGAGCAATAT 59.313 50.000 40.91 23.40 45.07 1.28
76 77 0.687354 AGATCGGGCCGAGCAATATT 59.313 50.000 40.91 21.23 45.07 1.28
77 78 0.798776 GATCGGGCCGAGCAATATTG 59.201 55.000 36.57 11.27 42.09 1.90
78 79 0.108585 ATCGGGCCGAGCAATATTGT 59.891 50.000 33.82 11.16 39.91 2.71
79 80 0.531974 TCGGGCCGAGCAATATTGTC 60.532 55.000 27.46 11.41 0.00 3.18
80 81 0.813610 CGGGCCGAGCAATATTGTCA 60.814 55.000 24.41 0.00 0.00 3.58
81 82 0.663153 GGGCCGAGCAATATTGTCAC 59.337 55.000 16.61 7.15 0.00 3.67
82 83 0.304705 GGCCGAGCAATATTGTCACG 59.695 55.000 16.61 16.55 0.00 4.35
83 84 0.304705 GCCGAGCAATATTGTCACGG 59.695 55.000 27.41 27.41 39.40 4.94
84 85 0.304705 CCGAGCAATATTGTCACGGC 59.695 55.000 23.81 9.48 34.29 5.68
85 86 0.043053 CGAGCAATATTGTCACGGCG 60.043 55.000 16.61 4.80 0.00 6.46
86 87 0.304705 GAGCAATATTGTCACGGCGG 59.695 55.000 16.61 0.00 0.00 6.13
87 88 0.107897 AGCAATATTGTCACGGCGGA 60.108 50.000 16.61 2.41 0.00 5.54
88 89 0.027586 GCAATATTGTCACGGCGGAC 59.972 55.000 16.61 16.09 38.29 4.79
89 90 1.651987 CAATATTGTCACGGCGGACT 58.348 50.000 22.60 10.98 38.61 3.85
90 91 1.327460 CAATATTGTCACGGCGGACTG 59.673 52.381 22.60 9.39 38.61 3.51
91 92 0.179084 ATATTGTCACGGCGGACTGG 60.179 55.000 22.60 4.68 38.61 4.00
92 93 1.537814 TATTGTCACGGCGGACTGGT 61.538 55.000 22.60 13.91 38.61 4.00
93 94 2.781595 ATTGTCACGGCGGACTGGTC 62.782 60.000 22.60 7.33 38.61 4.02
101 102 2.279517 CGGACTGGTCGGCTATGC 60.280 66.667 0.00 0.00 0.00 3.14
102 103 2.279517 GGACTGGTCGGCTATGCG 60.280 66.667 0.00 0.00 0.00 4.73
103 104 2.782222 GGACTGGTCGGCTATGCGA 61.782 63.158 0.00 0.00 0.00 5.10
104 105 1.141019 GACTGGTCGGCTATGCGAA 59.859 57.895 0.00 0.00 0.00 4.70
105 106 0.872021 GACTGGTCGGCTATGCGAAG 60.872 60.000 0.00 0.00 0.00 3.79
106 107 1.141881 CTGGTCGGCTATGCGAAGT 59.858 57.895 0.00 0.00 0.00 3.01
107 108 1.148157 CTGGTCGGCTATGCGAAGTG 61.148 60.000 0.00 0.00 0.00 3.16
108 109 1.153628 GGTCGGCTATGCGAAGTGT 60.154 57.895 0.00 0.00 0.00 3.55
109 110 1.146358 GGTCGGCTATGCGAAGTGTC 61.146 60.000 0.00 0.00 0.00 3.67
110 111 0.457853 GTCGGCTATGCGAAGTGTCA 60.458 55.000 0.00 0.00 0.00 3.58
111 112 0.179137 TCGGCTATGCGAAGTGTCAG 60.179 55.000 0.00 0.00 0.00 3.51
112 113 0.179137 CGGCTATGCGAAGTGTCAGA 60.179 55.000 0.00 0.00 0.00 3.27
113 114 1.281899 GGCTATGCGAAGTGTCAGAC 58.718 55.000 0.00 0.00 0.00 3.51
114 115 1.134965 GGCTATGCGAAGTGTCAGACT 60.135 52.381 1.31 0.00 35.94 3.24
116 117 2.996621 GCTATGCGAAGTGTCAGACTTT 59.003 45.455 1.31 0.00 45.48 2.66
117 118 3.181526 GCTATGCGAAGTGTCAGACTTTG 60.182 47.826 1.31 0.00 45.48 2.77
118 119 1.581934 TGCGAAGTGTCAGACTTTGG 58.418 50.000 4.14 0.00 45.48 3.28
119 120 1.134521 TGCGAAGTGTCAGACTTTGGT 60.135 47.619 4.14 0.00 45.48 3.67
120 121 1.261619 GCGAAGTGTCAGACTTTGGTG 59.738 52.381 4.14 0.00 45.48 4.17
121 122 1.867233 CGAAGTGTCAGACTTTGGTGG 59.133 52.381 1.31 0.00 45.48 4.61
122 123 2.483013 CGAAGTGTCAGACTTTGGTGGA 60.483 50.000 1.31 0.00 45.48 4.02
123 124 2.622064 AGTGTCAGACTTTGGTGGAC 57.378 50.000 1.31 0.00 0.00 4.02
124 125 1.141053 AGTGTCAGACTTTGGTGGACC 59.859 52.381 1.31 0.00 0.00 4.46
125 126 0.105964 TGTCAGACTTTGGTGGACCG 59.894 55.000 1.31 0.00 39.43 4.79
126 127 0.391597 GTCAGACTTTGGTGGACCGA 59.608 55.000 0.00 0.00 39.43 4.69
127 128 0.679505 TCAGACTTTGGTGGACCGAG 59.320 55.000 0.00 0.00 39.43 4.63
128 129 0.679505 CAGACTTTGGTGGACCGAGA 59.320 55.000 6.13 0.00 39.43 4.04
129 130 1.276421 CAGACTTTGGTGGACCGAGAT 59.724 52.381 6.13 0.00 39.43 2.75
130 131 1.978580 AGACTTTGGTGGACCGAGATT 59.021 47.619 6.13 0.00 39.43 2.40
131 132 2.076863 GACTTTGGTGGACCGAGATTG 58.923 52.381 6.13 0.00 39.43 2.67
132 133 0.804989 CTTTGGTGGACCGAGATTGC 59.195 55.000 0.00 0.00 39.43 3.56
133 134 0.953471 TTTGGTGGACCGAGATTGCG 60.953 55.000 0.00 0.00 39.43 4.85
134 135 3.195698 GGTGGACCGAGATTGCGC 61.196 66.667 0.00 0.00 0.00 6.09
135 136 2.125512 GTGGACCGAGATTGCGCT 60.126 61.111 9.73 0.00 0.00 5.92
136 137 2.167861 GTGGACCGAGATTGCGCTC 61.168 63.158 9.73 0.00 0.00 5.03
156 157 3.439540 GCGCTCGCCAAATGGGAA 61.440 61.111 0.00 0.00 40.01 3.97
157 158 2.988688 GCGCTCGCCAAATGGGAAA 61.989 57.895 0.00 0.00 40.01 3.13
158 159 1.137404 CGCTCGCCAAATGGGAAAG 59.863 57.895 0.90 0.00 40.01 2.62
159 160 1.512694 GCTCGCCAAATGGGAAAGG 59.487 57.895 0.90 0.00 40.01 3.11
160 161 1.948721 GCTCGCCAAATGGGAAAGGG 61.949 60.000 0.90 0.00 40.01 3.95
161 162 0.323360 CTCGCCAAATGGGAAAGGGA 60.323 55.000 0.90 0.00 40.01 4.20
162 163 0.334676 TCGCCAAATGGGAAAGGGAT 59.665 50.000 0.90 0.00 40.01 3.85
163 164 0.461135 CGCCAAATGGGAAAGGGATG 59.539 55.000 0.90 0.00 40.01 3.51
164 165 0.832626 GCCAAATGGGAAAGGGATGG 59.167 55.000 0.90 0.00 40.01 3.51
165 166 0.832626 CCAAATGGGAAAGGGATGGC 59.167 55.000 0.00 0.00 40.01 4.40
166 167 0.832626 CAAATGGGAAAGGGATGGCC 59.167 55.000 0.00 0.00 0.00 5.36
167 168 0.718408 AAATGGGAAAGGGATGGCCT 59.282 50.000 3.32 0.00 0.00 5.19
168 169 0.262876 AATGGGAAAGGGATGGCCTC 59.737 55.000 3.32 0.00 0.00 4.70
169 170 1.659035 ATGGGAAAGGGATGGCCTCC 61.659 60.000 3.32 8.58 44.11 4.30
176 177 4.728780 GGATGGCCTCCCTACTCA 57.271 61.111 3.32 0.00 38.19 3.41
177 178 3.172208 GGATGGCCTCCCTACTCAT 57.828 57.895 3.32 0.00 38.19 2.90
178 179 0.689623 GGATGGCCTCCCTACTCATG 59.310 60.000 3.32 0.00 38.19 3.07
179 180 0.036022 GATGGCCTCCCTACTCATGC 59.964 60.000 3.32 0.00 0.00 4.06
180 181 0.401105 ATGGCCTCCCTACTCATGCT 60.401 55.000 3.32 0.00 0.00 3.79
181 182 0.621571 TGGCCTCCCTACTCATGCTT 60.622 55.000 3.32 0.00 0.00 3.91
182 183 1.343985 TGGCCTCCCTACTCATGCTTA 60.344 52.381 3.32 0.00 0.00 3.09
183 184 1.981495 GGCCTCCCTACTCATGCTTAT 59.019 52.381 0.00 0.00 0.00 1.73
184 185 2.027653 GGCCTCCCTACTCATGCTTATC 60.028 54.545 0.00 0.00 0.00 1.75
185 186 2.903135 GCCTCCCTACTCATGCTTATCT 59.097 50.000 0.00 0.00 0.00 1.98
186 187 3.056179 GCCTCCCTACTCATGCTTATCTC 60.056 52.174 0.00 0.00 0.00 2.75
187 188 4.415596 CCTCCCTACTCATGCTTATCTCT 58.584 47.826 0.00 0.00 0.00 3.10
188 189 4.837860 CCTCCCTACTCATGCTTATCTCTT 59.162 45.833 0.00 0.00 0.00 2.85
189 190 5.279406 CCTCCCTACTCATGCTTATCTCTTG 60.279 48.000 0.00 0.00 0.00 3.02
190 191 4.590647 TCCCTACTCATGCTTATCTCTTGG 59.409 45.833 0.00 0.00 0.00 3.61
191 192 4.262808 CCCTACTCATGCTTATCTCTTGGG 60.263 50.000 0.00 0.00 0.00 4.12
192 193 4.590647 CCTACTCATGCTTATCTCTTGGGA 59.409 45.833 0.00 0.00 0.00 4.37
193 194 5.070981 CCTACTCATGCTTATCTCTTGGGAA 59.929 44.000 0.00 0.00 0.00 3.97
194 195 4.775236 ACTCATGCTTATCTCTTGGGAAC 58.225 43.478 0.00 0.00 0.00 3.62
195 196 4.472833 ACTCATGCTTATCTCTTGGGAACT 59.527 41.667 0.00 0.00 0.00 3.01
196 197 5.045286 ACTCATGCTTATCTCTTGGGAACTT 60.045 40.000 0.00 0.00 0.00 2.66
197 198 5.819991 TCATGCTTATCTCTTGGGAACTTT 58.180 37.500 0.00 0.00 0.00 2.66
198 199 5.649395 TCATGCTTATCTCTTGGGAACTTTG 59.351 40.000 0.00 0.00 0.00 2.77
199 200 5.241403 TGCTTATCTCTTGGGAACTTTGA 57.759 39.130 0.00 0.00 0.00 2.69
200 201 5.630121 TGCTTATCTCTTGGGAACTTTGAA 58.370 37.500 0.00 0.00 0.00 2.69
201 202 6.068010 TGCTTATCTCTTGGGAACTTTGAAA 58.932 36.000 0.00 0.00 0.00 2.69
202 203 6.207417 TGCTTATCTCTTGGGAACTTTGAAAG 59.793 38.462 2.89 2.89 0.00 2.62
203 204 6.349694 GCTTATCTCTTGGGAACTTTGAAAGG 60.350 42.308 10.02 0.00 0.00 3.11
204 205 4.788925 TCTCTTGGGAACTTTGAAAGGA 57.211 40.909 10.02 0.00 0.00 3.36
205 206 4.718961 TCTCTTGGGAACTTTGAAAGGAG 58.281 43.478 10.02 4.59 0.00 3.69
206 207 4.412199 TCTCTTGGGAACTTTGAAAGGAGA 59.588 41.667 10.02 6.77 0.00 3.71
207 208 4.718961 TCTTGGGAACTTTGAAAGGAGAG 58.281 43.478 10.02 0.00 0.00 3.20
208 209 3.508845 TGGGAACTTTGAAAGGAGAGG 57.491 47.619 10.02 0.00 0.00 3.69
209 210 3.053077 TGGGAACTTTGAAAGGAGAGGA 58.947 45.455 10.02 0.00 0.00 3.71
210 211 3.461831 TGGGAACTTTGAAAGGAGAGGAA 59.538 43.478 10.02 0.00 0.00 3.36
211 212 3.821600 GGGAACTTTGAAAGGAGAGGAAC 59.178 47.826 10.02 0.00 0.00 3.62
212 213 3.498777 GGAACTTTGAAAGGAGAGGAACG 59.501 47.826 10.02 0.00 0.00 3.95
213 214 2.495084 ACTTTGAAAGGAGAGGAACGC 58.505 47.619 10.02 0.00 0.00 4.84
214 215 2.104963 ACTTTGAAAGGAGAGGAACGCT 59.895 45.455 10.02 0.00 44.68 5.07
215 216 3.323979 ACTTTGAAAGGAGAGGAACGCTA 59.676 43.478 10.02 0.00 39.71 4.26
216 217 3.594603 TTGAAAGGAGAGGAACGCTAG 57.405 47.619 0.00 0.00 39.71 3.42
217 218 1.825474 TGAAAGGAGAGGAACGCTAGG 59.175 52.381 0.00 0.00 39.71 3.02
218 219 1.137282 GAAAGGAGAGGAACGCTAGGG 59.863 57.143 5.05 5.05 39.71 3.53
219 220 0.041386 AAGGAGAGGAACGCTAGGGT 59.959 55.000 6.62 6.62 39.71 4.34
220 221 0.396001 AGGAGAGGAACGCTAGGGTC 60.396 60.000 13.46 6.84 39.71 4.46
221 222 0.396001 GGAGAGGAACGCTAGGGTCT 60.396 60.000 13.46 6.88 39.71 3.85
222 223 1.476477 GAGAGGAACGCTAGGGTCTT 58.524 55.000 13.46 0.00 39.71 3.01
223 224 1.826096 GAGAGGAACGCTAGGGTCTTT 59.174 52.381 13.46 2.25 39.71 2.52
224 225 1.826096 AGAGGAACGCTAGGGTCTTTC 59.174 52.381 13.46 7.21 36.12 2.62
225 226 1.549170 GAGGAACGCTAGGGTCTTTCA 59.451 52.381 13.46 0.00 0.00 2.69
226 227 1.550976 AGGAACGCTAGGGTCTTTCAG 59.449 52.381 13.46 0.00 0.00 3.02
227 228 1.549170 GGAACGCTAGGGTCTTTCAGA 59.451 52.381 13.46 0.00 0.00 3.27
228 229 2.028385 GGAACGCTAGGGTCTTTCAGAA 60.028 50.000 13.46 0.00 0.00 3.02
229 230 2.745515 ACGCTAGGGTCTTTCAGAAC 57.254 50.000 6.62 0.00 0.00 3.01
230 231 1.067776 ACGCTAGGGTCTTTCAGAACG 60.068 52.381 6.62 0.00 31.09 3.95
231 232 1.067776 CGCTAGGGTCTTTCAGAACGT 60.068 52.381 0.00 0.00 31.09 3.99
232 233 2.608268 GCTAGGGTCTTTCAGAACGTC 58.392 52.381 0.00 0.00 31.09 4.34
233 234 2.231721 GCTAGGGTCTTTCAGAACGTCT 59.768 50.000 0.00 0.00 31.09 4.18
234 235 3.673866 GCTAGGGTCTTTCAGAACGTCTC 60.674 52.174 0.00 0.00 31.09 3.36
235 236 1.619332 AGGGTCTTTCAGAACGTCTCC 59.381 52.381 0.00 0.00 31.09 3.71
236 237 1.669211 GGGTCTTTCAGAACGTCTCCG 60.669 57.143 0.00 0.00 31.09 4.63
237 238 1.061485 GTCTTTCAGAACGTCTCCGC 58.939 55.000 0.00 0.00 37.70 5.54
238 239 0.386858 TCTTTCAGAACGTCTCCGCG 60.387 55.000 0.00 0.00 37.70 6.46
239 240 1.945776 CTTTCAGAACGTCTCCGCGC 61.946 60.000 0.00 0.00 37.70 6.86
240 241 3.909258 TTCAGAACGTCTCCGCGCC 62.909 63.158 0.00 0.00 37.70 6.53
250 251 4.690719 TCCGCGCCCACGACAATT 62.691 61.111 0.00 0.00 43.93 2.32
251 252 2.816083 CCGCGCCCACGACAATTA 60.816 61.111 0.00 0.00 43.93 1.40
252 253 2.177580 CCGCGCCCACGACAATTAT 61.178 57.895 0.00 0.00 43.93 1.28
253 254 1.711060 CCGCGCCCACGACAATTATT 61.711 55.000 0.00 0.00 43.93 1.40
254 255 0.588730 CGCGCCCACGACAATTATTG 60.589 55.000 0.00 3.07 43.93 1.90
256 257 1.793714 GCGCCCACGACAATTATTGTG 60.794 52.381 15.83 10.04 45.52 3.33
282 283 6.515272 AAAAATCATGAATAAGGCGACACT 57.485 33.333 0.00 0.00 0.00 3.55
283 284 5.490139 AAATCATGAATAAGGCGACACTG 57.510 39.130 0.00 0.00 0.00 3.66
284 285 3.610040 TCATGAATAAGGCGACACTGT 57.390 42.857 0.00 0.00 0.00 3.55
285 286 3.261580 TCATGAATAAGGCGACACTGTG 58.738 45.455 6.19 6.19 0.00 3.66
286 287 2.093306 TGAATAAGGCGACACTGTGG 57.907 50.000 13.09 0.00 0.00 4.17
287 288 1.621317 TGAATAAGGCGACACTGTGGA 59.379 47.619 13.09 0.00 0.00 4.02
288 289 2.000447 GAATAAGGCGACACTGTGGAC 59.000 52.381 13.09 5.07 0.00 4.02
289 290 0.108804 ATAAGGCGACACTGTGGACG 60.109 55.000 19.48 19.48 0.00 4.79
290 291 2.758770 TAAGGCGACACTGTGGACGC 62.759 60.000 30.73 30.73 42.75 5.19
291 292 4.664677 GGCGACACTGTGGACGCT 62.665 66.667 33.81 10.24 42.92 5.07
292 293 3.406361 GCGACACTGTGGACGCTG 61.406 66.667 31.00 11.18 41.29 5.18
293 294 2.734723 CGACACTGTGGACGCTGG 60.735 66.667 13.09 0.00 0.00 4.85
294 295 3.044305 GACACTGTGGACGCTGGC 61.044 66.667 13.09 0.00 0.00 4.85
295 296 3.807631 GACACTGTGGACGCTGGCA 62.808 63.158 13.09 0.00 0.00 4.92
296 297 3.046087 CACTGTGGACGCTGGCAG 61.046 66.667 10.94 10.94 35.31 4.85
297 298 4.320456 ACTGTGGACGCTGGCAGG 62.320 66.667 17.64 9.00 33.62 4.85
298 299 4.320456 CTGTGGACGCTGGCAGGT 62.320 66.667 17.64 12.37 0.00 4.00
299 300 4.624364 TGTGGACGCTGGCAGGTG 62.624 66.667 17.64 6.31 0.00 4.00
318 319 3.689832 CCAAAGGGCTGGGTGTAAT 57.310 52.632 0.00 0.00 32.32 1.89
319 320 1.937191 CCAAAGGGCTGGGTGTAATT 58.063 50.000 0.00 0.00 32.32 1.40
320 321 2.256306 CCAAAGGGCTGGGTGTAATTT 58.744 47.619 0.00 0.00 32.32 1.82
321 322 2.637382 CCAAAGGGCTGGGTGTAATTTT 59.363 45.455 0.00 0.00 32.32 1.82
322 323 3.835395 CCAAAGGGCTGGGTGTAATTTTA 59.165 43.478 0.00 0.00 32.32 1.52
323 324 4.284746 CCAAAGGGCTGGGTGTAATTTTAA 59.715 41.667 0.00 0.00 32.32 1.52
324 325 5.221742 CCAAAGGGCTGGGTGTAATTTTAAA 60.222 40.000 0.00 0.00 32.32 1.52
325 326 6.472016 CAAAGGGCTGGGTGTAATTTTAAAT 58.528 36.000 0.00 0.00 0.00 1.40
326 327 5.932619 AGGGCTGGGTGTAATTTTAAATC 57.067 39.130 0.00 0.00 0.00 2.17
327 328 4.401202 AGGGCTGGGTGTAATTTTAAATCG 59.599 41.667 0.00 0.00 0.00 3.34
328 329 4.109766 GGCTGGGTGTAATTTTAAATCGC 58.890 43.478 0.00 0.00 0.00 4.58
329 330 3.789224 GCTGGGTGTAATTTTAAATCGCG 59.211 43.478 0.00 0.00 0.00 5.87
330 331 4.437659 GCTGGGTGTAATTTTAAATCGCGA 60.438 41.667 13.09 13.09 0.00 5.87
331 332 5.224562 TGGGTGTAATTTTAAATCGCGAG 57.775 39.130 16.66 0.00 0.00 5.03
332 333 4.696402 TGGGTGTAATTTTAAATCGCGAGT 59.304 37.500 16.66 9.86 0.00 4.18
333 334 5.873712 TGGGTGTAATTTTAAATCGCGAGTA 59.126 36.000 16.66 6.58 0.00 2.59
334 335 6.036300 TGGGTGTAATTTTAAATCGCGAGTAG 59.964 38.462 16.66 0.00 0.00 2.57
335 336 6.036408 GGGTGTAATTTTAAATCGCGAGTAGT 59.964 38.462 16.66 0.00 0.00 2.73
336 337 7.413328 GGGTGTAATTTTAAATCGCGAGTAGTT 60.413 37.037 16.66 8.58 0.00 2.24
337 338 7.424452 GGTGTAATTTTAAATCGCGAGTAGTTG 59.576 37.037 16.66 0.00 0.00 3.16
338 339 6.957077 TGTAATTTTAAATCGCGAGTAGTTGC 59.043 34.615 16.66 4.64 0.00 4.17
339 340 5.796350 ATTTTAAATCGCGAGTAGTTGCT 57.204 34.783 16.66 0.00 0.00 3.91
340 341 5.600908 TTTTAAATCGCGAGTAGTTGCTT 57.399 34.783 16.66 0.00 0.00 3.91
341 342 5.600908 TTTAAATCGCGAGTAGTTGCTTT 57.399 34.783 16.66 10.06 0.00 3.51
342 343 6.709145 TTTAAATCGCGAGTAGTTGCTTTA 57.291 33.333 16.66 9.00 0.00 1.85
343 344 6.897259 TTAAATCGCGAGTAGTTGCTTTAT 57.103 33.333 16.66 0.00 0.00 1.40
344 345 5.391060 AAATCGCGAGTAGTTGCTTTATC 57.609 39.130 16.66 0.00 0.00 1.75
345 346 3.777465 TCGCGAGTAGTTGCTTTATCT 57.223 42.857 3.71 0.00 0.00 1.98
346 347 4.106029 TCGCGAGTAGTTGCTTTATCTT 57.894 40.909 3.71 0.00 0.00 2.40
347 348 4.103357 TCGCGAGTAGTTGCTTTATCTTC 58.897 43.478 3.71 0.00 0.00 2.87
348 349 3.061797 CGCGAGTAGTTGCTTTATCTTCG 60.062 47.826 0.00 0.00 0.00 3.79
349 350 3.301899 GCGAGTAGTTGCTTTATCTTCGC 60.302 47.826 2.21 0.00 34.74 4.70
350 351 3.243177 CGAGTAGTTGCTTTATCTTCGCC 59.757 47.826 0.00 0.00 0.00 5.54
351 352 4.434520 GAGTAGTTGCTTTATCTTCGCCT 58.565 43.478 0.00 0.00 0.00 5.52
352 353 4.833390 AGTAGTTGCTTTATCTTCGCCTT 58.167 39.130 0.00 0.00 0.00 4.35
353 354 5.246307 AGTAGTTGCTTTATCTTCGCCTTT 58.754 37.500 0.00 0.00 0.00 3.11
354 355 4.425577 AGTTGCTTTATCTTCGCCTTTG 57.574 40.909 0.00 0.00 0.00 2.77
355 356 3.821033 AGTTGCTTTATCTTCGCCTTTGT 59.179 39.130 0.00 0.00 0.00 2.83
356 357 4.278419 AGTTGCTTTATCTTCGCCTTTGTT 59.722 37.500 0.00 0.00 0.00 2.83
357 358 4.846779 TGCTTTATCTTCGCCTTTGTTT 57.153 36.364 0.00 0.00 0.00 2.83
358 359 4.545610 TGCTTTATCTTCGCCTTTGTTTG 58.454 39.130 0.00 0.00 0.00 2.93
359 360 3.920412 GCTTTATCTTCGCCTTTGTTTGG 59.080 43.478 0.00 0.00 0.00 3.28
360 361 3.569250 TTATCTTCGCCTTTGTTTGGC 57.431 42.857 0.00 0.00 46.42 4.52
365 366 4.756630 GCCTTTGTTTGGCTGTGG 57.243 55.556 0.00 0.00 46.38 4.17
366 367 1.822615 GCCTTTGTTTGGCTGTGGT 59.177 52.632 0.00 0.00 46.38 4.16
367 368 0.249447 GCCTTTGTTTGGCTGTGGTC 60.249 55.000 0.00 0.00 46.38 4.02
368 369 0.389025 CCTTTGTTTGGCTGTGGTCC 59.611 55.000 0.00 0.00 0.00 4.46
369 370 1.402787 CTTTGTTTGGCTGTGGTCCT 58.597 50.000 0.00 0.00 0.00 3.85
370 371 1.338020 CTTTGTTTGGCTGTGGTCCTC 59.662 52.381 0.00 0.00 0.00 3.71
371 372 0.817634 TTGTTTGGCTGTGGTCCTCG 60.818 55.000 0.00 0.00 0.00 4.63
372 373 1.966451 GTTTGGCTGTGGTCCTCGG 60.966 63.158 0.00 0.00 0.00 4.63
373 374 2.144078 TTTGGCTGTGGTCCTCGGA 61.144 57.895 3.84 0.00 0.00 4.55
374 375 2.391724 TTTGGCTGTGGTCCTCGGAC 62.392 60.000 7.57 7.57 43.87 4.79
382 383 3.967715 GTCCTCGGACCTTGTTGC 58.032 61.111 4.73 0.00 39.08 4.17
383 384 1.070786 GTCCTCGGACCTTGTTGCA 59.929 57.895 4.73 0.00 39.08 4.08
384 385 0.534203 GTCCTCGGACCTTGTTGCAA 60.534 55.000 4.73 0.00 39.08 4.08
385 386 0.534203 TCCTCGGACCTTGTTGCAAC 60.534 55.000 22.83 22.83 0.00 4.17
386 387 0.535102 CCTCGGACCTTGTTGCAACT 60.535 55.000 28.61 9.99 0.00 3.16
387 388 1.308998 CTCGGACCTTGTTGCAACTT 58.691 50.000 28.61 11.61 0.00 2.66
388 389 1.676006 CTCGGACCTTGTTGCAACTTT 59.324 47.619 28.61 11.27 0.00 2.66
389 390 1.673920 TCGGACCTTGTTGCAACTTTC 59.326 47.619 28.61 18.15 0.00 2.62
390 391 1.676006 CGGACCTTGTTGCAACTTTCT 59.324 47.619 28.61 10.22 0.00 2.52
391 392 2.287009 CGGACCTTGTTGCAACTTTCTC 60.287 50.000 28.61 17.28 0.00 2.87
392 393 2.952310 GGACCTTGTTGCAACTTTCTCT 59.048 45.455 28.61 7.80 0.00 3.10
393 394 3.381590 GGACCTTGTTGCAACTTTCTCTT 59.618 43.478 28.61 8.02 0.00 2.85
394 395 4.578928 GGACCTTGTTGCAACTTTCTCTTA 59.421 41.667 28.61 4.49 0.00 2.10
395 396 5.067283 GGACCTTGTTGCAACTTTCTCTTAA 59.933 40.000 28.61 12.06 0.00 1.85
396 397 6.239036 GGACCTTGTTGCAACTTTCTCTTAAT 60.239 38.462 28.61 4.99 0.00 1.40
397 398 7.112452 ACCTTGTTGCAACTTTCTCTTAATT 57.888 32.000 28.61 1.65 0.00 1.40
398 399 8.232913 ACCTTGTTGCAACTTTCTCTTAATTA 57.767 30.769 28.61 2.21 0.00 1.40
399 400 8.691797 ACCTTGTTGCAACTTTCTCTTAATTAA 58.308 29.630 28.61 10.04 0.00 1.40
400 401 9.696917 CCTTGTTGCAACTTTCTCTTAATTAAT 57.303 29.630 28.61 0.00 0.00 1.40
432 433 8.626093 GCAAACATTTTGCCTCATTTTTAAAA 57.374 26.923 11.77 0.00 39.38 1.52
433 434 9.080915 GCAAACATTTTGCCTCATTTTTAAAAA 57.919 25.926 15.38 15.38 39.38 1.94
454 455 2.134201 AAGTTTTAAAGGCTGCACGC 57.866 45.000 0.50 0.11 38.13 5.34
455 456 0.040425 AGTTTTAAAGGCTGCACGCG 60.040 50.000 3.53 3.53 40.44 6.01
456 457 1.371145 TTTTAAAGGCTGCACGCGC 60.371 52.632 5.73 0.00 40.44 6.86
466 467 3.741058 GCACGCGCAAACAAGATC 58.259 55.556 5.73 0.00 38.36 2.75
467 468 1.207593 GCACGCGCAAACAAGATCT 59.792 52.632 5.73 0.00 38.36 2.75
468 469 1.061799 GCACGCGCAAACAAGATCTG 61.062 55.000 5.73 0.00 38.36 2.90
469 470 1.061799 CACGCGCAAACAAGATCTGC 61.062 55.000 5.73 0.00 0.00 4.26
470 471 1.207339 CGCGCAAACAAGATCTGCA 59.793 52.632 8.75 0.00 35.78 4.41
471 472 0.385849 CGCGCAAACAAGATCTGCAA 60.386 50.000 8.75 0.00 35.78 4.08
472 473 1.334054 GCGCAAACAAGATCTGCAAG 58.666 50.000 0.30 0.00 35.78 4.01
473 474 1.335324 GCGCAAACAAGATCTGCAAGT 60.335 47.619 0.30 0.00 35.78 3.16
474 475 2.313234 CGCAAACAAGATCTGCAAGTG 58.687 47.619 0.00 0.00 35.78 3.16
475 476 2.056577 GCAAACAAGATCTGCAAGTGC 58.943 47.619 0.00 0.00 42.50 4.40
476 477 2.313234 CAAACAAGATCTGCAAGTGCG 58.687 47.619 0.00 0.00 45.83 5.34
477 478 0.239347 AACAAGATCTGCAAGTGCGC 59.761 50.000 0.00 0.00 45.83 6.09
478 479 1.225936 CAAGATCTGCAAGTGCGCG 60.226 57.895 0.00 0.00 45.83 6.86
479 480 3.031964 AAGATCTGCAAGTGCGCGC 62.032 57.895 27.26 27.26 45.83 6.86
480 481 4.858200 GATCTGCAAGTGCGCGCG 62.858 66.667 28.44 28.44 45.83 6.86
496 497 3.103911 CGCGAGTCCACGGTTCAC 61.104 66.667 0.00 0.00 0.00 3.18
507 508 3.799755 GGTTCACGGATGCGCCAC 61.800 66.667 6.51 0.23 35.94 5.01
508 509 3.047280 GTTCACGGATGCGCCACA 61.047 61.111 6.51 0.00 35.94 4.17
509 510 2.741985 TTCACGGATGCGCCACAG 60.742 61.111 6.51 1.85 35.94 3.66
514 515 2.747460 GGATGCGCCACAGCTCAA 60.747 61.111 4.18 0.00 37.25 3.02
515 516 2.758089 GGATGCGCCACAGCTCAAG 61.758 63.158 4.18 0.00 37.25 3.02
516 517 1.742880 GATGCGCCACAGCTCAAGA 60.743 57.895 4.18 0.00 37.25 3.02
517 518 1.077930 ATGCGCCACAGCTCAAGAT 60.078 52.632 4.18 0.00 37.25 2.40
518 519 0.679002 ATGCGCCACAGCTCAAGATT 60.679 50.000 4.18 0.00 37.25 2.40
519 520 0.890542 TGCGCCACAGCTCAAGATTT 60.891 50.000 4.18 0.00 38.13 2.17
520 521 0.242017 GCGCCACAGCTCAAGATTTT 59.758 50.000 0.00 0.00 36.60 1.82
521 522 1.336240 GCGCCACAGCTCAAGATTTTT 60.336 47.619 0.00 0.00 36.60 1.94
550 551 7.912056 TTCTGGTGTCTGAGAAAAATATCAG 57.088 36.000 0.00 0.00 43.53 2.90
551 552 5.877012 TCTGGTGTCTGAGAAAAATATCAGC 59.123 40.000 0.00 0.00 42.20 4.26
552 553 5.559770 TGGTGTCTGAGAAAAATATCAGCA 58.440 37.500 0.00 0.00 42.20 4.41
553 554 5.412594 TGGTGTCTGAGAAAAATATCAGCAC 59.587 40.000 15.25 15.25 42.85 4.40
554 555 5.645497 GGTGTCTGAGAAAAATATCAGCACT 59.355 40.000 19.33 0.00 42.98 4.40
556 557 7.334421 GGTGTCTGAGAAAAATATCAGCACTAA 59.666 37.037 19.33 0.00 42.98 2.24
558 559 9.453572 TGTCTGAGAAAAATATCAGCACTAATT 57.546 29.630 0.00 0.00 42.20 1.40
567 576 7.918536 AATATCAGCACTAATTATCAGGCAG 57.081 36.000 0.00 0.00 0.00 4.85
761 2973 7.174253 AGAGTTTTCAAATACGGCTACATTTCA 59.826 33.333 0.00 0.00 0.00 2.69
814 3118 4.477975 GACCTGGTCGACCTCGCG 62.478 72.222 33.39 19.82 39.60 5.87
883 3305 3.181486 CGCGCACCATATATACCTGAGAT 60.181 47.826 8.75 0.00 0.00 2.75
1012 3547 2.113860 ATATACCATGGCGCCATCAC 57.886 50.000 38.60 6.26 33.90 3.06
1413 4004 2.583593 GGCGTCTGATGTCTCCGC 60.584 66.667 0.00 0.00 43.35 5.54
1445 4036 1.068250 GCTCTAGCATGGACCGGTC 59.932 63.158 27.04 27.04 41.59 4.79
1452 4043 1.734137 CATGGACCGGTCGAGGTAG 59.266 63.158 27.68 11.88 46.09 3.18
1489 4126 1.663379 CCGCATCAGGTCGTAGGTGA 61.663 60.000 0.00 0.00 0.00 4.02
1572 4214 4.392047 TGTACTTGTTCTCGGTCTGTCTA 58.608 43.478 0.00 0.00 0.00 2.59
1591 4233 2.572191 ATGCTGTGCCGATGAATTTG 57.428 45.000 0.00 0.00 0.00 2.32
1592 4234 1.532523 TGCTGTGCCGATGAATTTGA 58.467 45.000 0.00 0.00 0.00 2.69
1597 4239 4.735985 CTGTGCCGATGAATTTGATTTGA 58.264 39.130 0.00 0.00 0.00 2.69
1599 4241 5.722263 TGTGCCGATGAATTTGATTTGATT 58.278 33.333 0.00 0.00 0.00 2.57
1600 4242 5.806502 TGTGCCGATGAATTTGATTTGATTC 59.193 36.000 0.00 0.00 33.83 2.52
1623 4270 2.044123 ACGAAATGGCCAAGGATCTC 57.956 50.000 10.96 0.00 0.00 2.75
1648 4295 5.168569 AGAAAGCAATCAAACATGATGCAG 58.831 37.500 0.00 0.00 0.00 4.41
1856 4597 6.586844 GCTTTTCGGATTTATAGCGTCTCTAT 59.413 38.462 0.00 0.00 40.86 1.98
1889 5979 6.835488 AGTGACATGCCAATATGATTTTACCT 59.165 34.615 0.00 0.00 0.00 3.08
2164 6427 5.912892 TGAGAACGATATTGTCATGCCTAA 58.087 37.500 0.00 0.00 0.00 2.69
2216 6479 3.762407 TGTCTTTCTTGATGGGTCGAA 57.238 42.857 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.109132 GCATTGGAAAAGGAGGTGCG 60.109 55.000 0.00 0.00 0.00 5.34
1 2 0.247460 GGCATTGGAAAAGGAGGTGC 59.753 55.000 0.00 0.00 0.00 5.01
2 3 0.527565 CGGCATTGGAAAAGGAGGTG 59.472 55.000 0.00 0.00 0.00 4.00
3 4 0.404040 TCGGCATTGGAAAAGGAGGT 59.596 50.000 0.00 0.00 0.00 3.85
4 5 1.767759 ATCGGCATTGGAAAAGGAGG 58.232 50.000 0.00 0.00 0.00 4.30
5 6 3.874392 AAATCGGCATTGGAAAAGGAG 57.126 42.857 0.00 0.00 0.00 3.69
6 7 3.366883 CGAAAATCGGCATTGGAAAAGGA 60.367 43.478 0.00 0.00 36.00 3.36
7 8 2.923020 CGAAAATCGGCATTGGAAAAGG 59.077 45.455 0.00 0.00 36.00 3.11
20 21 1.049251 CAAACCGCAACCGAAAATCG 58.951 50.000 0.00 0.00 40.07 3.34
21 22 1.001158 TCCAAACCGCAACCGAAAATC 60.001 47.619 0.00 0.00 36.29 2.17
22 23 1.033574 TCCAAACCGCAACCGAAAAT 58.966 45.000 0.00 0.00 36.29 1.82
23 24 0.815734 TTCCAAACCGCAACCGAAAA 59.184 45.000 0.00 0.00 36.29 2.29
24 25 1.033574 ATTCCAAACCGCAACCGAAA 58.966 45.000 0.00 0.00 36.29 3.46
25 26 0.312416 CATTCCAAACCGCAACCGAA 59.688 50.000 0.00 0.00 36.29 4.30
26 27 1.953017 CATTCCAAACCGCAACCGA 59.047 52.632 0.00 0.00 36.29 4.69
27 28 1.732683 GCATTCCAAACCGCAACCG 60.733 57.895 0.00 0.00 0.00 4.44
28 29 1.732683 CGCATTCCAAACCGCAACC 60.733 57.895 0.00 0.00 0.00 3.77
29 30 1.732683 CCGCATTCCAAACCGCAAC 60.733 57.895 0.00 0.00 0.00 4.17
30 31 0.889638 TACCGCATTCCAAACCGCAA 60.890 50.000 0.00 0.00 0.00 4.85
31 32 0.889638 TTACCGCATTCCAAACCGCA 60.890 50.000 0.00 0.00 0.00 5.69
32 33 0.241481 TTTACCGCATTCCAAACCGC 59.759 50.000 0.00 0.00 0.00 5.68
33 34 1.135517 CCTTTACCGCATTCCAAACCG 60.136 52.381 0.00 0.00 0.00 4.44
34 35 1.403647 GCCTTTACCGCATTCCAAACC 60.404 52.381 0.00 0.00 0.00 3.27
35 36 1.731098 CGCCTTTACCGCATTCCAAAC 60.731 52.381 0.00 0.00 0.00 2.93
36 37 0.523966 CGCCTTTACCGCATTCCAAA 59.476 50.000 0.00 0.00 0.00 3.28
37 38 0.321741 TCGCCTTTACCGCATTCCAA 60.322 50.000 0.00 0.00 0.00 3.53
38 39 0.321741 TTCGCCTTTACCGCATTCCA 60.322 50.000 0.00 0.00 0.00 3.53
39 40 0.377203 CTTCGCCTTTACCGCATTCC 59.623 55.000 0.00 0.00 0.00 3.01
40 41 1.365699 TCTTCGCCTTTACCGCATTC 58.634 50.000 0.00 0.00 0.00 2.67
41 42 1.940613 GATCTTCGCCTTTACCGCATT 59.059 47.619 0.00 0.00 0.00 3.56
42 43 1.583054 GATCTTCGCCTTTACCGCAT 58.417 50.000 0.00 0.00 0.00 4.73
43 44 0.804544 CGATCTTCGCCTTTACCGCA 60.805 55.000 0.00 0.00 31.14 5.69
44 45 1.488261 CCGATCTTCGCCTTTACCGC 61.488 60.000 0.00 0.00 38.82 5.68
45 46 0.874607 CCCGATCTTCGCCTTTACCG 60.875 60.000 0.00 0.00 38.82 4.02
46 47 1.158484 GCCCGATCTTCGCCTTTACC 61.158 60.000 0.00 0.00 38.82 2.85
47 48 1.158484 GGCCCGATCTTCGCCTTTAC 61.158 60.000 0.00 0.00 38.82 2.01
48 49 1.145377 GGCCCGATCTTCGCCTTTA 59.855 57.895 0.00 0.00 38.82 1.85
49 50 2.124695 GGCCCGATCTTCGCCTTT 60.125 61.111 0.00 0.00 38.82 3.11
50 51 4.530857 CGGCCCGATCTTCGCCTT 62.531 66.667 0.00 0.00 40.70 4.35
52 53 4.951963 CTCGGCCCGATCTTCGCC 62.952 72.222 6.16 4.85 38.82 5.54
54 55 2.978452 ATTGCTCGGCCCGATCTTCG 62.978 60.000 6.16 0.00 40.07 3.79
55 56 0.033504 TATTGCTCGGCCCGATCTTC 59.966 55.000 6.16 0.00 34.61 2.87
56 57 0.687354 ATATTGCTCGGCCCGATCTT 59.313 50.000 6.16 0.00 34.61 2.40
57 58 0.687354 AATATTGCTCGGCCCGATCT 59.313 50.000 6.16 0.00 34.61 2.75
58 59 0.798776 CAATATTGCTCGGCCCGATC 59.201 55.000 6.16 2.14 34.61 3.69
59 60 0.108585 ACAATATTGCTCGGCCCGAT 59.891 50.000 15.48 0.00 34.61 4.18
60 61 0.531974 GACAATATTGCTCGGCCCGA 60.532 55.000 15.48 5.37 0.00 5.14
61 62 0.813610 TGACAATATTGCTCGGCCCG 60.814 55.000 15.48 0.00 0.00 6.13
62 63 0.663153 GTGACAATATTGCTCGGCCC 59.337 55.000 15.48 0.00 0.00 5.80
63 64 0.304705 CGTGACAATATTGCTCGGCC 59.695 55.000 15.48 0.00 0.00 6.13
64 65 0.304705 CCGTGACAATATTGCTCGGC 59.695 55.000 25.57 14.97 35.94 5.54
65 66 0.304705 GCCGTGACAATATTGCTCGG 59.695 55.000 28.90 28.90 40.63 4.63
66 67 0.043053 CGCCGTGACAATATTGCTCG 60.043 55.000 15.48 17.53 0.00 5.03
67 68 0.304705 CCGCCGTGACAATATTGCTC 59.695 55.000 15.48 12.03 0.00 4.26
68 69 0.107897 TCCGCCGTGACAATATTGCT 60.108 50.000 15.48 2.96 0.00 3.91
69 70 0.027586 GTCCGCCGTGACAATATTGC 59.972 55.000 15.48 8.85 35.29 3.56
70 71 1.327460 CAGTCCGCCGTGACAATATTG 59.673 52.381 14.01 14.01 37.73 1.90
71 72 1.651987 CAGTCCGCCGTGACAATATT 58.348 50.000 8.13 0.00 37.73 1.28
72 73 0.179084 CCAGTCCGCCGTGACAATAT 60.179 55.000 8.13 0.00 37.73 1.28
73 74 1.216977 CCAGTCCGCCGTGACAATA 59.783 57.895 8.13 0.00 37.73 1.90
74 75 2.047274 CCAGTCCGCCGTGACAAT 60.047 61.111 8.13 0.00 37.73 2.71
75 76 3.509137 GACCAGTCCGCCGTGACAA 62.509 63.158 8.13 0.00 37.73 3.18
76 77 3.986006 GACCAGTCCGCCGTGACA 61.986 66.667 8.13 0.00 37.73 3.58
82 83 3.537874 ATAGCCGACCAGTCCGCC 61.538 66.667 7.38 0.00 35.01 6.13
83 84 2.279517 CATAGCCGACCAGTCCGC 60.280 66.667 3.32 3.32 34.74 5.54
84 85 2.279517 GCATAGCCGACCAGTCCG 60.280 66.667 0.00 0.00 0.00 4.79
85 86 2.279517 CGCATAGCCGACCAGTCC 60.280 66.667 0.00 0.00 0.00 3.85
86 87 0.872021 CTTCGCATAGCCGACCAGTC 60.872 60.000 0.00 0.00 36.90 3.51
87 88 1.141881 CTTCGCATAGCCGACCAGT 59.858 57.895 0.00 0.00 36.90 4.00
88 89 1.141881 ACTTCGCATAGCCGACCAG 59.858 57.895 0.00 0.00 36.90 4.00
89 90 1.153647 CACTTCGCATAGCCGACCA 60.154 57.895 0.00 0.00 36.90 4.02
90 91 1.146358 GACACTTCGCATAGCCGACC 61.146 60.000 0.00 0.00 36.90 4.79
91 92 0.457853 TGACACTTCGCATAGCCGAC 60.458 55.000 0.00 0.00 36.90 4.79
92 93 0.179137 CTGACACTTCGCATAGCCGA 60.179 55.000 0.00 0.00 35.09 5.54
93 94 0.179137 TCTGACACTTCGCATAGCCG 60.179 55.000 0.00 0.00 0.00 5.52
94 95 1.134965 AGTCTGACACTTCGCATAGCC 60.135 52.381 10.88 0.00 26.56 3.93
95 96 2.285827 AGTCTGACACTTCGCATAGC 57.714 50.000 10.88 0.00 26.56 2.97
96 97 3.369147 CCAAAGTCTGACACTTCGCATAG 59.631 47.826 10.88 0.00 45.32 2.23
97 98 3.244078 ACCAAAGTCTGACACTTCGCATA 60.244 43.478 10.88 0.00 45.32 3.14
98 99 2.146342 CCAAAGTCTGACACTTCGCAT 58.854 47.619 10.88 0.00 45.32 4.73
99 100 1.134521 ACCAAAGTCTGACACTTCGCA 60.135 47.619 10.88 0.00 45.32 5.10
100 101 1.261619 CACCAAAGTCTGACACTTCGC 59.738 52.381 10.88 0.00 45.32 4.70
101 102 1.867233 CCACCAAAGTCTGACACTTCG 59.133 52.381 10.88 0.00 45.32 3.79
102 103 2.872858 GTCCACCAAAGTCTGACACTTC 59.127 50.000 10.88 0.00 45.32 3.01
104 105 1.141053 GGTCCACCAAAGTCTGACACT 59.859 52.381 10.88 0.00 34.22 3.55
105 106 1.594331 GGTCCACCAAAGTCTGACAC 58.406 55.000 10.88 0.00 35.64 3.67
106 107 0.105964 CGGTCCACCAAAGTCTGACA 59.894 55.000 10.88 0.00 35.14 3.58
107 108 0.391597 TCGGTCCACCAAAGTCTGAC 59.608 55.000 0.00 0.00 35.14 3.51
108 109 0.679505 CTCGGTCCACCAAAGTCTGA 59.320 55.000 0.00 0.00 35.14 3.27
109 110 0.679505 TCTCGGTCCACCAAAGTCTG 59.320 55.000 0.00 0.00 35.14 3.51
110 111 1.645710 ATCTCGGTCCACCAAAGTCT 58.354 50.000 0.00 0.00 35.14 3.24
111 112 2.076863 CAATCTCGGTCCACCAAAGTC 58.923 52.381 0.00 0.00 35.14 3.01
112 113 1.882352 GCAATCTCGGTCCACCAAAGT 60.882 52.381 0.00 0.00 35.14 2.66
113 114 0.804989 GCAATCTCGGTCCACCAAAG 59.195 55.000 0.00 0.00 35.14 2.77
114 115 0.953471 CGCAATCTCGGTCCACCAAA 60.953 55.000 0.00 0.00 35.14 3.28
115 116 1.375396 CGCAATCTCGGTCCACCAA 60.375 57.895 0.00 0.00 35.14 3.67
116 117 2.264480 CGCAATCTCGGTCCACCA 59.736 61.111 0.00 0.00 35.14 4.17
117 118 3.195698 GCGCAATCTCGGTCCACC 61.196 66.667 0.30 0.00 0.00 4.61
118 119 2.125512 AGCGCAATCTCGGTCCAC 60.126 61.111 11.47 0.00 34.96 4.02
139 140 2.872337 CTTTCCCATTTGGCGAGCGC 62.872 60.000 6.27 6.27 41.06 5.92
140 141 1.137404 CTTTCCCATTTGGCGAGCG 59.863 57.895 0.00 0.00 0.00 5.03
141 142 1.512694 CCTTTCCCATTTGGCGAGC 59.487 57.895 0.00 0.00 0.00 5.03
142 143 0.323360 TCCCTTTCCCATTTGGCGAG 60.323 55.000 0.00 0.00 0.00 5.03
143 144 0.334676 ATCCCTTTCCCATTTGGCGA 59.665 50.000 0.00 0.00 0.00 5.54
144 145 0.461135 CATCCCTTTCCCATTTGGCG 59.539 55.000 0.00 0.00 0.00 5.69
145 146 0.832626 CCATCCCTTTCCCATTTGGC 59.167 55.000 0.00 0.00 0.00 4.52
146 147 0.832626 GCCATCCCTTTCCCATTTGG 59.167 55.000 0.00 0.00 0.00 3.28
147 148 0.832626 GGCCATCCCTTTCCCATTTG 59.167 55.000 0.00 0.00 0.00 2.32
148 149 0.718408 AGGCCATCCCTTTCCCATTT 59.282 50.000 5.01 0.00 43.06 2.32
149 150 0.262876 GAGGCCATCCCTTTCCCATT 59.737 55.000 5.01 0.00 46.60 3.16
150 151 1.659035 GGAGGCCATCCCTTTCCCAT 61.659 60.000 5.01 0.00 46.60 4.00
151 152 2.316586 GGAGGCCATCCCTTTCCCA 61.317 63.158 5.01 0.00 46.60 4.37
152 153 2.603580 GGAGGCCATCCCTTTCCC 59.396 66.667 5.01 0.00 46.60 3.97
160 161 0.036022 GCATGAGTAGGGAGGCCATC 59.964 60.000 5.01 0.00 0.00 3.51
161 162 0.401105 AGCATGAGTAGGGAGGCCAT 60.401 55.000 5.01 0.00 0.00 4.40
162 163 0.621571 AAGCATGAGTAGGGAGGCCA 60.622 55.000 5.01 0.00 0.00 5.36
163 164 1.424638 TAAGCATGAGTAGGGAGGCC 58.575 55.000 0.00 0.00 0.00 5.19
164 165 2.903135 AGATAAGCATGAGTAGGGAGGC 59.097 50.000 0.00 0.00 0.00 4.70
165 166 4.415596 AGAGATAAGCATGAGTAGGGAGG 58.584 47.826 0.00 0.00 0.00 4.30
166 167 5.279406 CCAAGAGATAAGCATGAGTAGGGAG 60.279 48.000 0.00 0.00 0.00 4.30
167 168 4.590647 CCAAGAGATAAGCATGAGTAGGGA 59.409 45.833 0.00 0.00 0.00 4.20
168 169 4.262808 CCCAAGAGATAAGCATGAGTAGGG 60.263 50.000 0.00 0.00 0.00 3.53
169 170 4.590647 TCCCAAGAGATAAGCATGAGTAGG 59.409 45.833 0.00 0.00 0.00 3.18
170 171 5.798125 TCCCAAGAGATAAGCATGAGTAG 57.202 43.478 0.00 0.00 0.00 2.57
171 172 5.663106 AGTTCCCAAGAGATAAGCATGAGTA 59.337 40.000 0.00 0.00 0.00 2.59
172 173 4.472833 AGTTCCCAAGAGATAAGCATGAGT 59.527 41.667 0.00 0.00 0.00 3.41
173 174 5.033589 AGTTCCCAAGAGATAAGCATGAG 57.966 43.478 0.00 0.00 0.00 2.90
174 175 5.441718 AAGTTCCCAAGAGATAAGCATGA 57.558 39.130 0.00 0.00 0.00 3.07
175 176 5.649395 TCAAAGTTCCCAAGAGATAAGCATG 59.351 40.000 0.00 0.00 0.00 4.06
176 177 5.819991 TCAAAGTTCCCAAGAGATAAGCAT 58.180 37.500 0.00 0.00 0.00 3.79
177 178 5.241403 TCAAAGTTCCCAAGAGATAAGCA 57.759 39.130 0.00 0.00 0.00 3.91
178 179 6.349694 CCTTTCAAAGTTCCCAAGAGATAAGC 60.350 42.308 0.00 0.00 0.00 3.09
179 180 6.942576 TCCTTTCAAAGTTCCCAAGAGATAAG 59.057 38.462 0.00 0.00 0.00 1.73
180 181 6.848069 TCCTTTCAAAGTTCCCAAGAGATAA 58.152 36.000 0.00 0.00 0.00 1.75
181 182 6.272324 TCTCCTTTCAAAGTTCCCAAGAGATA 59.728 38.462 0.00 0.00 0.00 1.98
182 183 5.073691 TCTCCTTTCAAAGTTCCCAAGAGAT 59.926 40.000 0.00 0.00 0.00 2.75
183 184 4.412199 TCTCCTTTCAAAGTTCCCAAGAGA 59.588 41.667 0.00 0.00 0.00 3.10
184 185 4.718961 TCTCCTTTCAAAGTTCCCAAGAG 58.281 43.478 0.00 0.00 0.00 2.85
185 186 4.446311 CCTCTCCTTTCAAAGTTCCCAAGA 60.446 45.833 0.00 0.00 0.00 3.02
186 187 3.823304 CCTCTCCTTTCAAAGTTCCCAAG 59.177 47.826 0.00 0.00 0.00 3.61
187 188 3.461831 TCCTCTCCTTTCAAAGTTCCCAA 59.538 43.478 0.00 0.00 0.00 4.12
188 189 3.053077 TCCTCTCCTTTCAAAGTTCCCA 58.947 45.455 0.00 0.00 0.00 4.37
189 190 3.790089 TCCTCTCCTTTCAAAGTTCCC 57.210 47.619 0.00 0.00 0.00 3.97
190 191 3.498777 CGTTCCTCTCCTTTCAAAGTTCC 59.501 47.826 0.00 0.00 0.00 3.62
191 192 3.058846 GCGTTCCTCTCCTTTCAAAGTTC 60.059 47.826 0.00 0.00 0.00 3.01
192 193 2.879026 GCGTTCCTCTCCTTTCAAAGTT 59.121 45.455 0.00 0.00 0.00 2.66
193 194 2.104963 AGCGTTCCTCTCCTTTCAAAGT 59.895 45.455 0.00 0.00 0.00 2.66
194 195 2.772287 AGCGTTCCTCTCCTTTCAAAG 58.228 47.619 0.00 0.00 0.00 2.77
195 196 2.930826 AGCGTTCCTCTCCTTTCAAA 57.069 45.000 0.00 0.00 0.00 2.69
196 197 2.233922 CCTAGCGTTCCTCTCCTTTCAA 59.766 50.000 0.00 0.00 0.00 2.69
197 198 1.825474 CCTAGCGTTCCTCTCCTTTCA 59.175 52.381 0.00 0.00 0.00 2.69
198 199 1.137282 CCCTAGCGTTCCTCTCCTTTC 59.863 57.143 0.00 0.00 0.00 2.62
199 200 1.196012 CCCTAGCGTTCCTCTCCTTT 58.804 55.000 0.00 0.00 0.00 3.11
200 201 0.041386 ACCCTAGCGTTCCTCTCCTT 59.959 55.000 0.00 0.00 0.00 3.36
201 202 0.396001 GACCCTAGCGTTCCTCTCCT 60.396 60.000 0.00 0.00 0.00 3.69
202 203 0.396001 AGACCCTAGCGTTCCTCTCC 60.396 60.000 0.00 0.00 0.00 3.71
203 204 1.476477 AAGACCCTAGCGTTCCTCTC 58.524 55.000 0.00 0.00 0.00 3.20
204 205 1.826096 GAAAGACCCTAGCGTTCCTCT 59.174 52.381 0.00 0.00 0.00 3.69
205 206 1.549170 TGAAAGACCCTAGCGTTCCTC 59.451 52.381 0.00 0.00 0.00 3.71
206 207 1.550976 CTGAAAGACCCTAGCGTTCCT 59.449 52.381 0.00 0.00 34.07 3.36
207 208 1.549170 TCTGAAAGACCCTAGCGTTCC 59.451 52.381 0.00 0.00 38.67 3.62
233 234 2.581208 ATAATTGTCGTGGGCGCGGA 62.581 55.000 8.83 0.00 38.14 5.54
234 235 1.711060 AATAATTGTCGTGGGCGCGG 61.711 55.000 8.83 0.00 38.14 6.46
235 236 0.588730 CAATAATTGTCGTGGGCGCG 60.589 55.000 0.00 0.00 38.14 6.86
236 237 0.450184 ACAATAATTGTCGTGGGCGC 59.550 50.000 0.00 0.00 40.56 6.53
237 238 1.202132 CCACAATAATTGTCGTGGGCG 60.202 52.381 4.45 0.00 44.26 6.13
238 239 2.559998 CCACAATAATTGTCGTGGGC 57.440 50.000 4.45 0.00 44.26 5.36
259 260 6.071952 ACAGTGTCGCCTTATTCATGATTTTT 60.072 34.615 0.00 0.00 0.00 1.94
260 261 5.415701 ACAGTGTCGCCTTATTCATGATTTT 59.584 36.000 0.00 0.00 0.00 1.82
261 262 4.943705 ACAGTGTCGCCTTATTCATGATTT 59.056 37.500 0.00 0.00 0.00 2.17
262 263 4.333649 CACAGTGTCGCCTTATTCATGATT 59.666 41.667 0.00 0.00 0.00 2.57
263 264 3.873361 CACAGTGTCGCCTTATTCATGAT 59.127 43.478 0.00 0.00 0.00 2.45
264 265 3.261580 CACAGTGTCGCCTTATTCATGA 58.738 45.455 0.00 0.00 0.00 3.07
265 266 2.352651 CCACAGTGTCGCCTTATTCATG 59.647 50.000 0.00 0.00 0.00 3.07
266 267 2.236146 TCCACAGTGTCGCCTTATTCAT 59.764 45.455 0.00 0.00 0.00 2.57
267 268 1.621317 TCCACAGTGTCGCCTTATTCA 59.379 47.619 0.00 0.00 0.00 2.57
268 269 2.000447 GTCCACAGTGTCGCCTTATTC 59.000 52.381 0.00 0.00 0.00 1.75
269 270 1.671850 CGTCCACAGTGTCGCCTTATT 60.672 52.381 0.00 0.00 0.00 1.40
270 271 0.108804 CGTCCACAGTGTCGCCTTAT 60.109 55.000 0.00 0.00 0.00 1.73
271 272 1.287815 CGTCCACAGTGTCGCCTTA 59.712 57.895 0.00 0.00 0.00 2.69
272 273 2.029073 CGTCCACAGTGTCGCCTT 59.971 61.111 0.00 0.00 0.00 4.35
273 274 4.664677 GCGTCCACAGTGTCGCCT 62.665 66.667 21.94 0.00 42.33 5.52
276 277 2.734723 CCAGCGTCCACAGTGTCG 60.735 66.667 9.97 9.97 0.00 4.35
277 278 3.044305 GCCAGCGTCCACAGTGTC 61.044 66.667 0.00 0.00 0.00 3.67
278 279 3.814615 CTGCCAGCGTCCACAGTGT 62.815 63.158 0.00 0.00 0.00 3.55
279 280 3.046087 CTGCCAGCGTCCACAGTG 61.046 66.667 0.00 0.00 0.00 3.66
280 281 4.320456 CCTGCCAGCGTCCACAGT 62.320 66.667 0.00 0.00 0.00 3.55
281 282 4.320456 ACCTGCCAGCGTCCACAG 62.320 66.667 0.00 0.00 0.00 3.66
282 283 4.624364 CACCTGCCAGCGTCCACA 62.624 66.667 0.00 0.00 0.00 4.17
300 301 1.937191 AATTACACCCAGCCCTTTGG 58.063 50.000 0.00 0.00 38.00 3.28
301 302 5.476091 TTAAAATTACACCCAGCCCTTTG 57.524 39.130 0.00 0.00 0.00 2.77
302 303 6.573485 CGATTTAAAATTACACCCAGCCCTTT 60.573 38.462 0.00 0.00 0.00 3.11
303 304 5.105513 CGATTTAAAATTACACCCAGCCCTT 60.106 40.000 0.00 0.00 0.00 3.95
304 305 4.401202 CGATTTAAAATTACACCCAGCCCT 59.599 41.667 0.00 0.00 0.00 5.19
305 306 4.678622 CGATTTAAAATTACACCCAGCCC 58.321 43.478 0.00 0.00 0.00 5.19
306 307 4.109766 GCGATTTAAAATTACACCCAGCC 58.890 43.478 0.00 0.00 0.00 4.85
307 308 3.789224 CGCGATTTAAAATTACACCCAGC 59.211 43.478 0.00 0.00 0.00 4.85
308 309 5.163794 ACTCGCGATTTAAAATTACACCCAG 60.164 40.000 10.36 0.00 0.00 4.45
309 310 4.696402 ACTCGCGATTTAAAATTACACCCA 59.304 37.500 10.36 0.00 0.00 4.51
310 311 5.225899 ACTCGCGATTTAAAATTACACCC 57.774 39.130 10.36 0.00 0.00 4.61
311 312 6.997222 ACTACTCGCGATTTAAAATTACACC 58.003 36.000 10.36 0.00 0.00 4.16
312 313 7.045804 GCAACTACTCGCGATTTAAAATTACAC 60.046 37.037 10.36 0.00 0.00 2.90
313 314 6.957077 GCAACTACTCGCGATTTAAAATTACA 59.043 34.615 10.36 0.00 0.00 2.41
314 315 7.178074 AGCAACTACTCGCGATTTAAAATTAC 58.822 34.615 10.36 0.00 0.00 1.89
315 316 7.298507 AGCAACTACTCGCGATTTAAAATTA 57.701 32.000 10.36 0.00 0.00 1.40
316 317 6.178239 AGCAACTACTCGCGATTTAAAATT 57.822 33.333 10.36 0.00 0.00 1.82
317 318 5.796350 AGCAACTACTCGCGATTTAAAAT 57.204 34.783 10.36 0.00 0.00 1.82
318 319 5.600908 AAGCAACTACTCGCGATTTAAAA 57.399 34.783 10.36 0.00 0.00 1.52
319 320 5.600908 AAAGCAACTACTCGCGATTTAAA 57.399 34.783 10.36 0.00 0.00 1.52
320 321 6.755141 AGATAAAGCAACTACTCGCGATTTAA 59.245 34.615 10.36 0.00 0.00 1.52
321 322 6.270815 AGATAAAGCAACTACTCGCGATTTA 58.729 36.000 10.36 9.50 0.00 1.40
322 323 5.109903 AGATAAAGCAACTACTCGCGATTT 58.890 37.500 10.36 7.31 0.00 2.17
323 324 4.683832 AGATAAAGCAACTACTCGCGATT 58.316 39.130 10.36 6.77 0.00 3.34
324 325 4.308899 AGATAAAGCAACTACTCGCGAT 57.691 40.909 10.36 2.40 0.00 4.58
325 326 3.777465 AGATAAAGCAACTACTCGCGA 57.223 42.857 9.26 9.26 0.00 5.87
326 327 3.061797 CGAAGATAAAGCAACTACTCGCG 60.062 47.826 0.00 0.00 0.00 5.87
327 328 3.301899 GCGAAGATAAAGCAACTACTCGC 60.302 47.826 0.00 0.00 34.74 5.03
328 329 3.243177 GGCGAAGATAAAGCAACTACTCG 59.757 47.826 0.00 0.00 0.00 4.18
329 330 4.434520 AGGCGAAGATAAAGCAACTACTC 58.565 43.478 0.00 0.00 0.00 2.59
330 331 4.473477 AGGCGAAGATAAAGCAACTACT 57.527 40.909 0.00 0.00 0.00 2.57
331 332 5.106673 ACAAAGGCGAAGATAAAGCAACTAC 60.107 40.000 0.00 0.00 0.00 2.73
332 333 5.001232 ACAAAGGCGAAGATAAAGCAACTA 58.999 37.500 0.00 0.00 0.00 2.24
333 334 3.821033 ACAAAGGCGAAGATAAAGCAACT 59.179 39.130 0.00 0.00 0.00 3.16
334 335 4.160736 ACAAAGGCGAAGATAAAGCAAC 57.839 40.909 0.00 0.00 0.00 4.17
335 336 4.846779 AACAAAGGCGAAGATAAAGCAA 57.153 36.364 0.00 0.00 0.00 3.91
336 337 4.545610 CAAACAAAGGCGAAGATAAAGCA 58.454 39.130 0.00 0.00 0.00 3.91
337 338 3.920412 CCAAACAAAGGCGAAGATAAAGC 59.080 43.478 0.00 0.00 0.00 3.51
338 339 3.920412 GCCAAACAAAGGCGAAGATAAAG 59.080 43.478 0.00 0.00 43.15 1.85
339 340 3.908213 GCCAAACAAAGGCGAAGATAAA 58.092 40.909 0.00 0.00 43.15 1.40
340 341 3.569250 GCCAAACAAAGGCGAAGATAA 57.431 42.857 0.00 0.00 43.15 1.75
349 350 0.389025 GGACCACAGCCAAACAAAGG 59.611 55.000 0.00 0.00 0.00 3.11
350 351 1.338020 GAGGACCACAGCCAAACAAAG 59.662 52.381 0.00 0.00 0.00 2.77
351 352 1.398692 GAGGACCACAGCCAAACAAA 58.601 50.000 0.00 0.00 0.00 2.83
352 353 0.817634 CGAGGACCACAGCCAAACAA 60.818 55.000 0.00 0.00 0.00 2.83
353 354 1.227823 CGAGGACCACAGCCAAACA 60.228 57.895 0.00 0.00 0.00 2.83
354 355 1.966451 CCGAGGACCACAGCCAAAC 60.966 63.158 0.00 0.00 0.00 2.93
355 356 2.144078 TCCGAGGACCACAGCCAAA 61.144 57.895 0.00 0.00 0.00 3.28
356 357 2.525629 TCCGAGGACCACAGCCAA 60.526 61.111 0.00 0.00 0.00 4.52
357 358 3.311110 GTCCGAGGACCACAGCCA 61.311 66.667 11.07 0.00 39.08 4.75
365 366 0.534203 TTGCAACAAGGTCCGAGGAC 60.534 55.000 13.61 13.61 43.87 3.85
366 367 0.534203 GTTGCAACAAGGTCCGAGGA 60.534 55.000 24.52 0.00 0.00 3.71
367 368 0.535102 AGTTGCAACAAGGTCCGAGG 60.535 55.000 30.11 0.00 0.00 4.63
368 369 1.308998 AAGTTGCAACAAGGTCCGAG 58.691 50.000 30.11 0.00 0.00 4.63
369 370 1.673920 GAAAGTTGCAACAAGGTCCGA 59.326 47.619 30.11 0.00 0.00 4.55
370 371 1.676006 AGAAAGTTGCAACAAGGTCCG 59.324 47.619 30.11 0.00 0.00 4.79
371 372 2.952310 AGAGAAAGTTGCAACAAGGTCC 59.048 45.455 30.11 14.46 0.00 4.46
372 373 4.639135 AAGAGAAAGTTGCAACAAGGTC 57.361 40.909 30.11 19.88 0.00 3.85
373 374 6.715347 ATTAAGAGAAAGTTGCAACAAGGT 57.285 33.333 30.11 12.78 0.00 3.50
374 375 9.696917 ATTAATTAAGAGAAAGTTGCAACAAGG 57.303 29.630 30.11 0.00 0.00 3.61
407 408 8.626093 TTTTAAAAATGAGGCAAAATGTTTGC 57.374 26.923 15.64 15.64 44.22 3.68
432 433 3.308595 GCGTGCAGCCTTTAAAACTTTTT 59.691 39.130 0.00 0.00 40.81 1.94
433 434 2.863740 GCGTGCAGCCTTTAAAACTTTT 59.136 40.909 0.00 0.00 40.81 2.27
434 435 2.469826 GCGTGCAGCCTTTAAAACTTT 58.530 42.857 0.00 0.00 40.81 2.66
435 436 1.599419 CGCGTGCAGCCTTTAAAACTT 60.599 47.619 0.00 0.00 44.76 2.66
436 437 0.040425 CGCGTGCAGCCTTTAAAACT 60.040 50.000 0.00 0.00 44.76 2.66
437 438 1.605481 GCGCGTGCAGCCTTTAAAAC 61.605 55.000 17.66 0.00 44.76 2.43
438 439 1.371145 GCGCGTGCAGCCTTTAAAA 60.371 52.632 17.66 0.00 44.76 1.52
439 440 2.254051 GCGCGTGCAGCCTTTAAA 59.746 55.556 17.66 0.00 44.76 1.52
449 450 1.061799 CAGATCTTGTTTGCGCGTGC 61.062 55.000 15.48 15.48 43.20 5.34
450 451 1.061799 GCAGATCTTGTTTGCGCGTG 61.062 55.000 8.43 0.00 0.00 5.34
451 452 1.207593 GCAGATCTTGTTTGCGCGT 59.792 52.632 8.43 0.00 0.00 6.01
452 453 0.385849 TTGCAGATCTTGTTTGCGCG 60.386 50.000 0.00 0.00 40.62 6.86
453 454 1.334054 CTTGCAGATCTTGTTTGCGC 58.666 50.000 0.00 0.00 40.62 6.09
454 455 2.313234 CACTTGCAGATCTTGTTTGCG 58.687 47.619 0.00 0.00 40.62 4.85
455 456 2.056577 GCACTTGCAGATCTTGTTTGC 58.943 47.619 0.00 0.00 41.59 3.68
456 457 2.313234 CGCACTTGCAGATCTTGTTTG 58.687 47.619 1.48 0.00 42.21 2.93
457 458 1.335324 GCGCACTTGCAGATCTTGTTT 60.335 47.619 0.30 0.00 42.21 2.83
458 459 0.239347 GCGCACTTGCAGATCTTGTT 59.761 50.000 0.30 0.00 42.21 2.83
459 460 1.871772 GCGCACTTGCAGATCTTGT 59.128 52.632 0.30 0.00 42.21 3.16
460 461 1.225936 CGCGCACTTGCAGATCTTG 60.226 57.895 8.75 0.00 42.21 3.02
461 462 3.031964 GCGCGCACTTGCAGATCTT 62.032 57.895 29.10 0.00 42.21 2.40
462 463 3.494336 GCGCGCACTTGCAGATCT 61.494 61.111 29.10 0.00 42.21 2.75
463 464 4.858200 CGCGCGCACTTGCAGATC 62.858 66.667 32.61 0.00 42.21 2.75
479 480 3.103911 GTGAACCGTGGACTCGCG 61.104 66.667 0.00 0.00 45.47 5.87
480 481 3.103911 CGTGAACCGTGGACTCGC 61.104 66.667 0.00 0.00 0.00 5.03
481 482 2.209064 ATCCGTGAACCGTGGACTCG 62.209 60.000 0.00 0.00 33.91 4.18
482 483 0.736325 CATCCGTGAACCGTGGACTC 60.736 60.000 0.00 0.00 33.91 3.36
483 484 1.292223 CATCCGTGAACCGTGGACT 59.708 57.895 0.00 0.00 33.91 3.85
484 485 2.388232 GCATCCGTGAACCGTGGAC 61.388 63.158 0.00 0.00 33.91 4.02
485 486 2.047655 GCATCCGTGAACCGTGGA 60.048 61.111 0.00 0.00 35.96 4.02
486 487 3.487202 CGCATCCGTGAACCGTGG 61.487 66.667 0.00 0.00 33.66 4.94
487 488 4.147322 GCGCATCCGTGAACCGTG 62.147 66.667 0.30 0.00 36.67 4.94
490 491 3.799755 GTGGCGCATCCGTGAACC 61.800 66.667 10.83 0.00 37.80 3.62
491 492 3.027170 CTGTGGCGCATCCGTGAAC 62.027 63.158 10.83 0.00 37.80 3.18
492 493 2.741985 CTGTGGCGCATCCGTGAA 60.742 61.111 10.83 0.00 37.80 3.18
497 498 2.747460 TTGAGCTGTGGCGCATCC 60.747 61.111 10.83 0.00 46.63 3.51
498 499 1.094073 ATCTTGAGCTGTGGCGCATC 61.094 55.000 10.83 0.00 46.63 3.91
499 500 0.679002 AATCTTGAGCTGTGGCGCAT 60.679 50.000 10.83 0.00 46.63 4.73
500 501 0.890542 AAATCTTGAGCTGTGGCGCA 60.891 50.000 10.83 0.00 45.83 6.09
501 502 0.242017 AAAATCTTGAGCTGTGGCGC 59.758 50.000 0.00 0.00 44.37 6.53
502 503 2.712057 AAAAATCTTGAGCTGTGGCG 57.288 45.000 0.00 0.00 44.37 5.69
523 524 9.300681 TGATATTTTTCTCAGACACCAGAAATT 57.699 29.630 0.00 0.00 38.21 1.82
524 525 8.868522 TGATATTTTTCTCAGACACCAGAAAT 57.131 30.769 0.00 0.00 38.21 2.17
525 526 7.094634 GCTGATATTTTTCTCAGACACCAGAAA 60.095 37.037 3.84 0.00 41.13 2.52
526 527 6.372659 GCTGATATTTTTCTCAGACACCAGAA 59.627 38.462 3.84 0.00 41.13 3.02
530 531 5.645497 AGTGCTGATATTTTTCTCAGACACC 59.355 40.000 16.27 6.25 41.79 4.16
550 551 4.396166 ACACAACTGCCTGATAATTAGTGC 59.604 41.667 0.00 0.00 0.00 4.40
551 552 5.877012 AGACACAACTGCCTGATAATTAGTG 59.123 40.000 0.00 0.00 0.00 2.74
552 553 6.054860 AGACACAACTGCCTGATAATTAGT 57.945 37.500 0.00 0.00 0.00 2.24
553 554 8.668510 AATAGACACAACTGCCTGATAATTAG 57.331 34.615 0.00 0.00 0.00 1.73
556 557 9.060347 CAATAATAGACACAACTGCCTGATAAT 57.940 33.333 0.00 0.00 0.00 1.28
558 559 6.992123 CCAATAATAGACACAACTGCCTGATA 59.008 38.462 0.00 0.00 0.00 2.15
559 560 5.824624 CCAATAATAGACACAACTGCCTGAT 59.175 40.000 0.00 0.00 0.00 2.90
560 561 5.185454 CCAATAATAGACACAACTGCCTGA 58.815 41.667 0.00 0.00 0.00 3.86
567 576 3.064820 CCCACGCCAATAATAGACACAAC 59.935 47.826 0.00 0.00 0.00 3.32
667 676 5.714047 AGATTAGGCAGCTTTGCTTAAAAC 58.286 37.500 6.60 5.05 39.26 2.43
761 2973 5.079643 AGTTGTGATATTTTGTGAAGGCCT 58.920 37.500 0.00 0.00 0.00 5.19
814 3118 2.649257 GCGATCGTGCTATGTCCGC 61.649 63.158 17.81 0.00 0.00 5.54
883 3305 3.038280 TGTGTGAAGAAAGGAGTGGAGA 58.962 45.455 0.00 0.00 0.00 3.71
1012 3547 0.327591 AAGAAGAAGGAGCAGGCCAG 59.672 55.000 5.01 0.00 0.00 4.85
1356 3947 9.607333 AGATATGGATGGTTCTTCAGAATACTA 57.393 33.333 0.00 0.00 36.33 1.82
1357 3948 8.503428 AGATATGGATGGTTCTTCAGAATACT 57.497 34.615 0.00 0.00 36.33 2.12
1358 3949 8.592809 AGAGATATGGATGGTTCTTCAGAATAC 58.407 37.037 0.00 0.00 36.33 1.89
1435 4026 2.125961 GCTACCTCGACCGGTCCAT 61.126 63.158 28.52 13.66 38.49 3.41
1445 4036 1.819229 AGGTGCATCTGCTACCTCG 59.181 57.895 15.89 0.00 43.80 4.63
1452 4043 3.200593 CGCCAGAGGTGCATCTGC 61.201 66.667 2.86 0.00 44.47 4.26
1489 4126 2.102588 GACACATATGGGAAGCTACGGT 59.897 50.000 13.12 0.00 0.00 4.83
1491 4128 2.102420 TGGACACATATGGGAAGCTACG 59.898 50.000 13.12 0.00 0.00 3.51
1572 4214 2.093890 TCAAATTCATCGGCACAGCAT 58.906 42.857 0.00 0.00 0.00 3.79
1591 4233 4.265320 GGCCATTTCGTTTCGAATCAAATC 59.735 41.667 0.00 0.00 45.28 2.17
1592 4234 4.173256 GGCCATTTCGTTTCGAATCAAAT 58.827 39.130 0.00 5.02 45.28 2.32
1597 4239 2.094752 CCTTGGCCATTTCGTTTCGAAT 60.095 45.455 6.09 0.00 45.28 3.34
1599 4241 0.878416 CCTTGGCCATTTCGTTTCGA 59.122 50.000 6.09 0.00 0.00 3.71
1600 4242 0.878416 TCCTTGGCCATTTCGTTTCG 59.122 50.000 6.09 0.00 0.00 3.46
1623 4270 5.407084 TGCATCATGTTTGATTGCTTTCTTG 59.593 36.000 0.00 0.00 40.70 3.02
1815 4556 7.887381 TCCGAAAAGCATAACAAAATTTAGGA 58.113 30.769 0.00 0.00 31.87 2.94
1856 4597 6.883756 TCATATTGGCATGTCACTAGAAACAA 59.116 34.615 0.00 0.00 0.00 2.83
1944 6041 7.436080 CAGGCCAATTTATTCACACATAATCAC 59.564 37.037 5.01 0.00 0.00 3.06
2164 6427 6.565247 CGTGAAAATCTTTTAACGGTGTAGCT 60.565 38.462 14.74 0.00 46.32 3.32
2216 6479 0.467290 TGAAGCGGTTCTTGGCCTTT 60.467 50.000 26.05 0.00 34.56 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.