Multiple sequence alignment - TraesCS2A01G454200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G454200 chr2A 100.000 2291 0 0 1 2291 703281420 703283710 0.000000e+00 4231.0
1 TraesCS2A01G454200 chr2A 93.038 474 15 2 859 1332 703291119 703291574 0.000000e+00 676.0
2 TraesCS2A01G454200 chr2A 93.590 390 19 3 943 1332 703337542 703337925 5.490000e-161 577.0
3 TraesCS2A01G454200 chr2A 93.916 263 14 1 599 861 703290827 703291087 1.650000e-106 396.0
4 TraesCS2A01G454200 chr2A 83.938 386 27 16 1688 2051 703208582 703208954 1.010000e-88 337.0
5 TraesCS2A01G454200 chr2A 85.017 287 41 2 1010 1295 703448232 703448517 8.010000e-75 291.0
6 TraesCS2A01G454200 chr2A 92.481 133 8 1 674 806 703337222 703337352 3.000000e-44 189.0
7 TraesCS2A01G454200 chr2A 89.630 135 14 0 236 370 703288867 703289001 3.030000e-39 172.0
8 TraesCS2A01G454200 chr2A 78.472 288 35 14 236 507 703333466 703333742 1.820000e-36 163.0
9 TraesCS2A01G454200 chr2A 91.011 89 7 1 279 367 703116353 703116440 4.000000e-23 119.0
10 TraesCS2A01G454200 chr2A 97.297 37 0 1 204 239 703116269 703116305 6.830000e-06 62.1
11 TraesCS2A01G454200 chr2D 85.433 762 63 16 599 1332 562734703 562735444 0.000000e+00 749.0
12 TraesCS2A01G454200 chr2D 94.748 476 23 1 859 1332 562785459 562785934 0.000000e+00 739.0
13 TraesCS2A01G454200 chr2D 94.318 352 18 2 985 1334 562684994 562685345 2.590000e-149 538.0
14 TraesCS2A01G454200 chr2D 88.063 444 34 10 859 1301 562845241 562845666 2.030000e-140 508.0
15 TraesCS2A01G454200 chr2D 85.132 491 42 16 859 1332 562807776 562808252 7.410000e-130 473.0
16 TraesCS2A01G454200 chr2D 91.988 337 15 9 1639 1967 562685342 562685674 1.600000e-126 462.0
17 TraesCS2A01G454200 chr2D 84.921 378 40 11 1676 2051 562754442 562754804 1.290000e-97 366.0
18 TraesCS2A01G454200 chr2D 88.848 269 19 8 599 861 562785152 562785415 1.020000e-83 320.0
19 TraesCS2A01G454200 chr2D 84.411 263 22 5 236 483 562784659 562784917 8.180000e-60 241.0
20 TraesCS2A01G454200 chr2D 96.528 144 5 0 377 520 562734356 562734499 2.940000e-59 239.0
21 TraesCS2A01G454200 chr2D 91.329 173 11 2 669 839 562753689 562753859 1.370000e-57 233.0
22 TraesCS2A01G454200 chr2D 90.076 131 13 0 236 366 562734176 562734306 1.090000e-38 171.0
23 TraesCS2A01G454200 chr2D 81.778 225 11 11 42 239 562784405 562784626 6.550000e-36 161.0
24 TraesCS2A01G454200 chr2D 87.879 132 10 3 377 507 562804623 562804749 1.420000e-32 150.0
25 TraesCS2A01G454200 chr2D 94.318 88 5 0 719 806 562807539 562807626 3.970000e-28 135.0
26 TraesCS2A01G454200 chr2D 90.000 90 9 0 138 227 562838713 562838802 1.440000e-22 117.0
27 TraesCS2A01G454200 chr2D 76.305 249 23 14 137 372 562804366 562804591 1.450000e-17 100.0
28 TraesCS2A01G454200 chr2D 96.552 58 2 0 545 602 562785056 562785113 1.870000e-16 97.1
29 TraesCS2A01G454200 chr2D 94.828 58 3 0 545 602 562684300 562684357 8.720000e-15 91.6
30 TraesCS2A01G454200 chr2D 94.828 58 3 0 545 602 562734607 562734664 8.720000e-15 91.6
31 TraesCS2A01G454200 chr2D 91.045 67 5 1 172 237 562584649 562584715 3.130000e-14 89.8
32 TraesCS2A01G454200 chr2D 81.443 97 11 5 653 742 562844913 562845009 3.160000e-09 73.1
33 TraesCS2A01G454200 chr2B 93.067 476 26 6 862 1332 673092880 673093353 0.000000e+00 689.0
34 TraesCS2A01G454200 chr2B 90.023 441 31 5 893 1331 672646482 672646911 1.990000e-155 558.0
35 TraesCS2A01G454200 chr2B 90.000 410 32 6 893 1299 672797027 672796624 2.610000e-144 521.0
36 TraesCS2A01G454200 chr2B 86.623 456 42 9 889 1331 673003605 673004054 9.510000e-134 486.0
37 TraesCS2A01G454200 chr2B 79.864 442 60 19 859 1295 673595384 673595801 1.720000e-76 296.0
38 TraesCS2A01G454200 chr2B 80.000 400 34 20 1676 2051 673051284 673051661 1.050000e-63 254.0
39 TraesCS2A01G454200 chr2B 78.667 375 43 18 138 496 673001723 673002076 4.960000e-52 215.0
40 TraesCS2A01G454200 chr2B 82.418 273 14 13 606 861 673092575 673092830 8.290000e-50 207.0
41 TraesCS2A01G454200 chr2B 82.400 250 21 11 252 501 672798068 672797842 1.800000e-46 196.0
42 TraesCS2A01G454200 chr2B 94.017 117 6 1 113 228 673090656 673090772 2.340000e-40 176.0
43 TraesCS2A01G454200 chr2B 87.234 141 14 3 599 738 672828376 672828239 8.470000e-35 158.0
44 TraesCS2A01G454200 chr2B 92.079 101 8 0 706 806 672776507 672776407 2.370000e-30 143.0
45 TraesCS2A01G454200 chr2B 86.538 104 11 3 138 239 673049789 673049891 6.690000e-21 111.0
46 TraesCS2A01G454200 chr2B 82.946 129 11 4 743 861 673003314 673003441 3.110000e-19 106.0
47 TraesCS2A01G454200 chr2B 97.297 37 0 1 868 904 673628545 673628580 6.830000e-06 62.1
48 TraesCS2A01G454200 chr1A 94.904 314 15 1 1331 1643 369512478 369512791 7.350000e-135 490.0
49 TraesCS2A01G454200 chr4A 94.340 318 17 1 1326 1643 590230536 590230220 9.510000e-134 486.0
50 TraesCS2A01G454200 chrUn 94.805 308 15 1 1334 1640 122294750 122294443 1.590000e-131 479.0
51 TraesCS2A01G454200 chr6A 94.788 307 16 0 1334 1640 546707197 546707503 1.590000e-131 479.0
52 TraesCS2A01G454200 chr5A 94.788 307 16 0 1334 1640 121639770 121639464 1.590000e-131 479.0
53 TraesCS2A01G454200 chr3A 94.788 307 16 0 1334 1640 22781803 22781497 1.590000e-131 479.0
54 TraesCS2A01G454200 chr3A 94.231 312 18 0 1331 1642 51751574 51751885 5.730000e-131 477.0
55 TraesCS2A01G454200 chr7B 93.671 316 19 1 1327 1642 462883219 462882905 2.660000e-129 472.0
56 TraesCS2A01G454200 chr7B 91.770 243 20 0 2049 2291 626945770 626945528 2.820000e-89 339.0
57 TraesCS2A01G454200 chr7A 93.125 320 22 0 1325 1644 512097613 512097932 9.580000e-129 470.0
58 TraesCS2A01G454200 chr4B 91.803 244 20 0 2048 2291 83180223 83180466 7.840000e-90 340.0
59 TraesCS2A01G454200 chr4B 91.358 243 21 0 2049 2291 432587608 432587366 1.310000e-87 333.0
60 TraesCS2A01G454200 chr5B 91.393 244 21 0 2048 2291 254822734 254822491 3.650000e-88 335.0
61 TraesCS2A01G454200 chr5B 91.393 244 21 0 2048 2291 449090991 449090748 3.650000e-88 335.0
62 TraesCS2A01G454200 chr3B 91.393 244 21 0 2048 2291 147214866 147215109 3.650000e-88 335.0
63 TraesCS2A01G454200 chr3B 91.393 244 21 0 2048 2291 158430331 158430574 3.650000e-88 335.0
64 TraesCS2A01G454200 chr1B 91.393 244 21 0 2048 2291 621664876 621665119 3.650000e-88 335.0
65 TraesCS2A01G454200 chr1B 91.358 243 21 0 2049 2291 460289502 460289260 1.310000e-87 333.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G454200 chr2A 703281420 703283710 2290 False 4231.000000 4231 100.000000 1 2291 1 chr2A.!!$F2 2290
1 TraesCS2A01G454200 chr2A 703288867 703291574 2707 False 414.666667 676 92.194667 236 1332 3 chr2A.!!$F5 1096
2 TraesCS2A01G454200 chr2A 703333466 703337925 4459 False 309.666667 577 88.181000 236 1332 3 chr2A.!!$F6 1096
3 TraesCS2A01G454200 chr2D 562684300 562685674 1374 False 363.866667 538 93.711333 545 1967 3 chr2D.!!$F3 1422
4 TraesCS2A01G454200 chr2D 562734176 562735444 1268 False 312.650000 749 91.716250 236 1332 4 chr2D.!!$F4 1096
5 TraesCS2A01G454200 chr2D 562784405 562785934 1529 False 311.620000 739 89.267400 42 1332 5 chr2D.!!$F6 1290
6 TraesCS2A01G454200 chr2D 562753689 562754804 1115 False 299.500000 366 88.125000 669 2051 2 chr2D.!!$F5 1382
7 TraesCS2A01G454200 chr2D 562844913 562845666 753 False 290.550000 508 84.753000 653 1301 2 chr2D.!!$F8 648
8 TraesCS2A01G454200 chr2D 562804366 562808252 3886 False 214.500000 473 85.908500 137 1332 4 chr2D.!!$F7 1195
9 TraesCS2A01G454200 chr2B 672796624 672798068 1444 True 358.500000 521 86.200000 252 1299 2 chr2B.!!$R3 1047
10 TraesCS2A01G454200 chr2B 673090656 673093353 2697 False 357.333333 689 89.834000 113 1332 3 chr2B.!!$F6 1219
11 TraesCS2A01G454200 chr2B 673001723 673004054 2331 False 269.000000 486 82.745333 138 1331 3 chr2B.!!$F4 1193

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 618 0.539438 CAAACCTGGCTGGCAACCTA 60.539 55.0 10.71 0.0 40.22 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 11276 0.040157 CCACTGCATGTCGTGTTTGG 60.04 55.0 13.12 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.735478 CGCCGTCACCGCTTTGTA 60.735 61.111 0.00 0.00 0.00 2.41
24 25 2.726691 CGCCGTCACCGCTTTGTAG 61.727 63.158 0.00 0.00 0.00 2.74
25 26 3.023591 GCCGTCACCGCTTTGTAGC 62.024 63.158 0.00 0.00 44.21 3.58
26 27 2.388232 CCGTCACCGCTTTGTAGCC 61.388 63.158 0.00 0.00 44.86 3.93
27 28 2.388232 CGTCACCGCTTTGTAGCCC 61.388 63.158 0.00 0.00 44.86 5.19
28 29 2.047655 TCACCGCTTTGTAGCCCG 60.048 61.111 0.00 0.00 44.86 6.13
29 30 2.358247 CACCGCTTTGTAGCCCGT 60.358 61.111 0.00 0.00 44.86 5.28
30 31 2.358247 ACCGCTTTGTAGCCCGTG 60.358 61.111 0.00 0.00 44.86 4.94
31 32 2.047655 CCGCTTTGTAGCCCGTGA 60.048 61.111 0.00 0.00 44.86 4.35
32 33 2.388232 CCGCTTTGTAGCCCGTGAC 61.388 63.158 0.00 0.00 44.86 3.67
33 34 1.374252 CGCTTTGTAGCCCGTGACT 60.374 57.895 0.00 0.00 44.86 3.41
34 35 1.352156 CGCTTTGTAGCCCGTGACTC 61.352 60.000 0.00 0.00 44.86 3.36
35 36 1.352156 GCTTTGTAGCCCGTGACTCG 61.352 60.000 0.00 0.00 41.74 4.18
90 101 1.279271 GGCCAATACTCCACACTCTGT 59.721 52.381 0.00 0.00 0.00 3.41
107 118 2.948979 TCTGTAGCCAAGGTTTGTTGTG 59.051 45.455 0.00 0.00 0.00 3.33
119 142 3.712881 GTTGTGGTCGGCAGTCGC 61.713 66.667 0.00 0.00 39.05 5.19
170 196 0.768221 TTCACTCCCCAGCTGAAGGT 60.768 55.000 17.39 5.54 0.00 3.50
233 261 1.797713 CGTCCGATGCGTCAGTGTTAT 60.798 52.381 6.75 0.00 0.00 1.89
234 262 2.540157 CGTCCGATGCGTCAGTGTTATA 60.540 50.000 6.75 0.00 0.00 0.98
239 378 2.554806 TGCGTCAGTGTTATACTCGG 57.445 50.000 0.00 0.00 37.60 4.63
240 379 1.814394 TGCGTCAGTGTTATACTCGGT 59.186 47.619 0.00 0.00 37.60 4.69
246 385 5.514204 CGTCAGTGTTATACTCGGTAAAAGG 59.486 44.000 0.00 0.00 37.60 3.11
249 388 6.015180 TCAGTGTTATACTCGGTAAAAGGTGT 60.015 38.462 0.00 0.00 37.60 4.16
296 458 1.597027 CGCCAAGAAAGACCGGTGT 60.597 57.895 14.63 4.35 0.00 4.16
300 462 2.028748 GCCAAGAAAGACCGGTGTACTA 60.029 50.000 14.63 0.00 0.00 1.82
301 463 3.582780 CCAAGAAAGACCGGTGTACTAC 58.417 50.000 14.63 0.00 0.00 2.73
414 618 0.539438 CAAACCTGGCTGGCAACCTA 60.539 55.000 10.71 0.00 40.22 3.08
434 638 4.631813 CCTACTTGGCTAGTTAAACAGCTG 59.368 45.833 13.48 13.48 38.33 4.24
538 3245 0.539986 TCAAGATTGCCCTCCCGTAC 59.460 55.000 0.00 0.00 0.00 3.67
550 5302 1.931172 CTCCCGTACGGCACTTAATTG 59.069 52.381 29.15 11.75 0.00 2.32
602 5521 7.812309 TGTGTCTGAGAAAAATATCACGTAG 57.188 36.000 0.00 0.00 0.00 3.51
603 5522 6.811665 TGTGTCTGAGAAAAATATCACGTAGG 59.188 38.462 0.00 0.00 0.00 3.18
618 5582 0.916809 GTAGGCTAACCATGTGGGGT 59.083 55.000 3.77 0.00 45.04 4.95
642 8533 3.120199 CCTGTCTCGTATGTTGGCAAAAG 60.120 47.826 0.00 0.00 0.00 2.27
694 8849 5.331830 GCATTAGCGCTATTTTAAGCAAAGC 60.332 40.000 19.60 6.60 42.91 3.51
695 8850 5.560966 TTAGCGCTATTTTAAGCAAAGCT 57.439 34.783 19.60 0.09 42.91 3.74
786 9485 2.446435 GGCTACATTTCTGGCCTTCAA 58.554 47.619 3.32 0.00 41.20 2.69
787 9486 2.164422 GGCTACATTTCTGGCCTTCAAC 59.836 50.000 3.32 0.00 41.20 3.18
822 9614 5.487488 ACTTACATTATTCAGGACCTGGTCA 59.513 40.000 26.94 8.09 33.68 4.02
939 9984 1.110442 CAACCAAGCTCACCACCAAA 58.890 50.000 0.00 0.00 0.00 3.28
1102 10160 4.254709 TCTGCACCAAGCCGCTGT 62.255 61.111 0.00 0.00 44.83 4.40
1340 10403 3.802948 TCGACAAGATCTAAGGCCTTC 57.197 47.619 24.49 7.84 0.00 3.46
1341 10404 3.366396 TCGACAAGATCTAAGGCCTTCT 58.634 45.455 24.49 10.55 0.00 2.85
1342 10405 3.769844 TCGACAAGATCTAAGGCCTTCTT 59.230 43.478 24.49 16.69 39.40 2.52
1343 10406 4.223032 TCGACAAGATCTAAGGCCTTCTTT 59.777 41.667 24.49 7.55 36.93 2.52
1344 10407 4.331168 CGACAAGATCTAAGGCCTTCTTTG 59.669 45.833 24.49 20.29 36.93 2.77
1345 10408 4.593956 ACAAGATCTAAGGCCTTCTTTGG 58.406 43.478 24.49 10.63 36.93 3.28
1346 10409 4.043435 ACAAGATCTAAGGCCTTCTTTGGT 59.957 41.667 24.49 11.27 36.93 3.67
1347 10410 4.936685 AGATCTAAGGCCTTCTTTGGTT 57.063 40.909 24.49 0.00 36.93 3.67
1348 10411 5.262455 AGATCTAAGGCCTTCTTTGGTTT 57.738 39.130 24.49 0.00 36.93 3.27
1349 10412 5.012893 AGATCTAAGGCCTTCTTTGGTTTG 58.987 41.667 24.49 0.00 36.93 2.93
1350 10413 3.496331 TCTAAGGCCTTCTTTGGTTTGG 58.504 45.455 24.49 0.00 36.93 3.28
1351 10414 2.470057 AAGGCCTTCTTTGGTTTGGA 57.530 45.000 13.78 0.00 29.99 3.53
1352 10415 2.001076 AGGCCTTCTTTGGTTTGGAG 57.999 50.000 0.00 0.00 0.00 3.86
1353 10416 0.969149 GGCCTTCTTTGGTTTGGAGG 59.031 55.000 0.00 0.00 0.00 4.30
1354 10417 1.480498 GGCCTTCTTTGGTTTGGAGGA 60.480 52.381 0.00 0.00 0.00 3.71
1355 10418 2.316108 GCCTTCTTTGGTTTGGAGGAA 58.684 47.619 0.00 0.00 0.00 3.36
1356 10419 2.899900 GCCTTCTTTGGTTTGGAGGAAT 59.100 45.455 0.00 0.00 0.00 3.01
1357 10420 3.324846 GCCTTCTTTGGTTTGGAGGAATT 59.675 43.478 0.00 0.00 0.00 2.17
1358 10421 4.202357 GCCTTCTTTGGTTTGGAGGAATTT 60.202 41.667 0.00 0.00 0.00 1.82
1359 10422 5.687441 GCCTTCTTTGGTTTGGAGGAATTTT 60.687 40.000 0.00 0.00 0.00 1.82
1360 10423 6.463755 GCCTTCTTTGGTTTGGAGGAATTTTA 60.464 38.462 0.00 0.00 0.00 1.52
1361 10424 7.679783 CCTTCTTTGGTTTGGAGGAATTTTAT 58.320 34.615 0.00 0.00 0.00 1.40
1362 10425 8.811994 CCTTCTTTGGTTTGGAGGAATTTTATA 58.188 33.333 0.00 0.00 0.00 0.98
1363 10426 9.860898 CTTCTTTGGTTTGGAGGAATTTTATAG 57.139 33.333 0.00 0.00 0.00 1.31
1364 10427 8.361169 TCTTTGGTTTGGAGGAATTTTATAGG 57.639 34.615 0.00 0.00 0.00 2.57
1365 10428 8.174085 TCTTTGGTTTGGAGGAATTTTATAGGA 58.826 33.333 0.00 0.00 0.00 2.94
1366 10429 8.909423 TTTGGTTTGGAGGAATTTTATAGGAT 57.091 30.769 0.00 0.00 0.00 3.24
1367 10430 8.909423 TTGGTTTGGAGGAATTTTATAGGATT 57.091 30.769 0.00 0.00 0.00 3.01
1368 10431 8.909423 TGGTTTGGAGGAATTTTATAGGATTT 57.091 30.769 0.00 0.00 0.00 2.17
1369 10432 9.332713 TGGTTTGGAGGAATTTTATAGGATTTT 57.667 29.630 0.00 0.00 0.00 1.82
1370 10433 9.817809 GGTTTGGAGGAATTTTATAGGATTTTC 57.182 33.333 0.00 0.00 0.00 2.29
1412 10475 5.973899 GGAAAAATTCCTTCAGAGCTCTT 57.026 39.130 15.27 0.00 46.57 2.85
1413 10476 6.338214 GGAAAAATTCCTTCAGAGCTCTTT 57.662 37.500 15.27 1.02 46.57 2.52
1414 10477 6.155136 GGAAAAATTCCTTCAGAGCTCTTTG 58.845 40.000 15.27 4.87 46.57 2.77
1415 10478 5.718724 AAAATTCCTTCAGAGCTCTTTGG 57.281 39.130 15.27 15.93 0.00 3.28
1416 10479 4.379302 AATTCCTTCAGAGCTCTTTGGT 57.621 40.909 15.27 0.00 0.00 3.67
1417 10480 3.864789 TTCCTTCAGAGCTCTTTGGTT 57.135 42.857 15.27 0.00 0.00 3.67
1418 10481 3.864789 TCCTTCAGAGCTCTTTGGTTT 57.135 42.857 15.27 0.00 0.00 3.27
1419 10482 3.480470 TCCTTCAGAGCTCTTTGGTTTG 58.520 45.455 15.27 1.50 0.00 2.93
1420 10483 3.117888 TCCTTCAGAGCTCTTTGGTTTGT 60.118 43.478 15.27 0.00 31.30 2.83
1421 10484 4.102524 TCCTTCAGAGCTCTTTGGTTTGTA 59.897 41.667 15.27 0.00 31.30 2.41
1422 10485 4.453819 CCTTCAGAGCTCTTTGGTTTGTAG 59.546 45.833 15.27 5.08 31.30 2.74
1423 10486 4.008074 TCAGAGCTCTTTGGTTTGTAGG 57.992 45.455 15.27 0.00 31.30 3.18
1424 10487 3.646162 TCAGAGCTCTTTGGTTTGTAGGA 59.354 43.478 15.27 0.20 31.30 2.94
1425 10488 4.102524 TCAGAGCTCTTTGGTTTGTAGGAA 59.897 41.667 15.27 0.00 31.30 3.36
1426 10489 5.006386 CAGAGCTCTTTGGTTTGTAGGAAT 58.994 41.667 15.27 0.00 0.00 3.01
1427 10490 5.006386 AGAGCTCTTTGGTTTGTAGGAATG 58.994 41.667 11.45 0.00 0.00 2.67
1428 10491 4.985538 AGCTCTTTGGTTTGTAGGAATGA 58.014 39.130 0.00 0.00 0.00 2.57
1429 10492 5.385198 AGCTCTTTGGTTTGTAGGAATGAA 58.615 37.500 0.00 0.00 0.00 2.57
1430 10493 5.833131 AGCTCTTTGGTTTGTAGGAATGAAA 59.167 36.000 0.00 0.00 0.00 2.69
1431 10494 6.494835 AGCTCTTTGGTTTGTAGGAATGAAAT 59.505 34.615 0.00 0.00 0.00 2.17
1432 10495 6.808704 GCTCTTTGGTTTGTAGGAATGAAATC 59.191 38.462 0.00 0.00 0.00 2.17
1433 10496 7.227049 TCTTTGGTTTGTAGGAATGAAATCC 57.773 36.000 0.00 0.00 39.96 3.01
1446 10509 7.659652 GGAATGAAATCCTATTCCTACGAAG 57.340 40.000 8.37 0.00 45.66 3.79
1447 10510 6.651225 GGAATGAAATCCTATTCCTACGAAGG 59.349 42.308 8.37 0.00 45.66 3.46
1448 10511 7.472945 GGAATGAAATCCTATTCCTACGAAGGA 60.473 40.741 8.37 0.00 45.66 3.36
1470 10533 9.539194 AAGGAATTCTTTCTATCCTTCACATTT 57.461 29.630 5.23 0.00 46.70 2.32
1471 10534 9.183368 AGGAATTCTTTCTATCCTTCACATTTC 57.817 33.333 5.23 0.00 39.23 2.17
1472 10535 8.960591 GGAATTCTTTCTATCCTTCACATTTCA 58.039 33.333 5.23 0.00 32.16 2.69
1476 10539 9.618890 TTCTTTCTATCCTTCACATTTCATAGG 57.381 33.333 0.00 0.00 0.00 2.57
1477 10540 8.992349 TCTTTCTATCCTTCACATTTCATAGGA 58.008 33.333 0.00 0.00 39.21 2.94
1478 10541 9.618890 CTTTCTATCCTTCACATTTCATAGGAA 57.381 33.333 0.00 0.00 38.42 3.36
1479 10542 9.973661 TTTCTATCCTTCACATTTCATAGGAAA 57.026 29.630 4.85 4.85 46.36 3.13
1480 10543 9.973661 TTCTATCCTTCACATTTCATAGGAAAA 57.026 29.630 6.65 0.00 45.52 2.29
1500 10563 9.975218 AGGAAAATAAAAATTAGCCTAGACTCA 57.025 29.630 0.00 0.00 0.00 3.41
1531 10594 6.780457 AAATCCTATGGTGTGAATCAAAGG 57.220 37.500 0.00 0.00 0.00 3.11
1532 10595 5.715439 ATCCTATGGTGTGAATCAAAGGA 57.285 39.130 0.00 0.00 36.39 3.36
1533 10596 4.843728 TCCTATGGTGTGAATCAAAGGAC 58.156 43.478 0.00 0.00 0.00 3.85
1534 10597 4.288366 TCCTATGGTGTGAATCAAAGGACA 59.712 41.667 0.00 0.00 0.00 4.02
1535 10598 5.044919 TCCTATGGTGTGAATCAAAGGACAT 60.045 40.000 0.00 0.00 0.00 3.06
1536 10599 5.297776 CCTATGGTGTGAATCAAAGGACATC 59.702 44.000 0.00 0.00 0.00 3.06
1537 10600 4.371624 TGGTGTGAATCAAAGGACATCT 57.628 40.909 0.00 0.00 0.00 2.90
1538 10601 4.326826 TGGTGTGAATCAAAGGACATCTC 58.673 43.478 0.00 0.00 0.00 2.75
1539 10602 3.691609 GGTGTGAATCAAAGGACATCTCC 59.308 47.826 0.00 0.00 36.71 3.71
1555 10618 7.936301 AGGACATCTCCTTTTCTATTTCTATGC 59.064 37.037 0.00 0.00 45.77 3.14
1556 10619 7.716998 GGACATCTCCTTTTCTATTTCTATGCA 59.283 37.037 0.00 0.00 33.07 3.96
1557 10620 9.282569 GACATCTCCTTTTCTATTTCTATGCAT 57.717 33.333 3.79 3.79 0.00 3.96
1577 10640 6.068473 GCATAAGATTTGAGATGCATGTCA 57.932 37.500 21.70 21.70 43.36 3.58
1578 10641 6.678878 GCATAAGATTTGAGATGCATGTCAT 58.321 36.000 25.41 13.07 43.36 3.06
1587 10650 3.599046 GATGCATGTCATCTCGTTTCC 57.401 47.619 2.46 0.00 46.29 3.13
1588 10651 2.768253 TGCATGTCATCTCGTTTCCT 57.232 45.000 0.00 0.00 0.00 3.36
1589 10652 3.885724 TGCATGTCATCTCGTTTCCTA 57.114 42.857 0.00 0.00 0.00 2.94
1590 10653 4.406648 TGCATGTCATCTCGTTTCCTAT 57.593 40.909 0.00 0.00 0.00 2.57
1591 10654 4.122046 TGCATGTCATCTCGTTTCCTATG 58.878 43.478 0.00 0.00 0.00 2.23
1592 10655 4.141959 TGCATGTCATCTCGTTTCCTATGA 60.142 41.667 0.00 0.00 0.00 2.15
1593 10656 4.210120 GCATGTCATCTCGTTTCCTATGAC 59.790 45.833 7.23 7.23 45.40 3.06
1594 10657 5.595885 CATGTCATCTCGTTTCCTATGACT 58.404 41.667 13.59 0.19 45.40 3.41
1595 10658 5.661056 TGTCATCTCGTTTCCTATGACTT 57.339 39.130 13.59 0.00 45.40 3.01
1596 10659 6.037786 TGTCATCTCGTTTCCTATGACTTT 57.962 37.500 13.59 0.00 45.40 2.66
1597 10660 6.464222 TGTCATCTCGTTTCCTATGACTTTT 58.536 36.000 13.59 0.00 45.40 2.27
1598 10661 6.590292 TGTCATCTCGTTTCCTATGACTTTTC 59.410 38.462 13.59 0.00 45.40 2.29
1599 10662 6.814146 GTCATCTCGTTTCCTATGACTTTTCT 59.186 38.462 0.00 0.00 43.07 2.52
1600 10663 7.974501 GTCATCTCGTTTCCTATGACTTTTCTA 59.025 37.037 0.00 0.00 43.07 2.10
1601 10664 8.696374 TCATCTCGTTTCCTATGACTTTTCTAT 58.304 33.333 0.00 0.00 0.00 1.98
1602 10665 9.319143 CATCTCGTTTCCTATGACTTTTCTATT 57.681 33.333 0.00 0.00 0.00 1.73
1603 10666 8.928270 TCTCGTTTCCTATGACTTTTCTATTC 57.072 34.615 0.00 0.00 0.00 1.75
1604 10667 7.980099 TCTCGTTTCCTATGACTTTTCTATTCC 59.020 37.037 0.00 0.00 0.00 3.01
1605 10668 7.848128 TCGTTTCCTATGACTTTTCTATTCCT 58.152 34.615 0.00 0.00 0.00 3.36
1606 10669 8.974238 TCGTTTCCTATGACTTTTCTATTCCTA 58.026 33.333 0.00 0.00 0.00 2.94
1607 10670 9.765795 CGTTTCCTATGACTTTTCTATTCCTAT 57.234 33.333 0.00 0.00 0.00 2.57
1628 10691 9.354673 TCCTATGATTTTTCAATCCTATGAACC 57.645 33.333 0.00 0.00 38.95 3.62
1629 10692 9.135189 CCTATGATTTTTCAATCCTATGAACCA 57.865 33.333 0.00 0.00 38.95 3.67
1632 10695 9.880157 ATGATTTTTCAATCCTATGAACCAAAG 57.120 29.630 0.00 0.00 38.95 2.77
1633 10696 8.313292 TGATTTTTCAATCCTATGAACCAAAGG 58.687 33.333 0.00 0.00 38.95 3.11
1634 10697 7.847711 TTTTTCAATCCTATGAACCAAAGGA 57.152 32.000 0.00 0.00 43.38 3.36
1635 10698 7.466746 TTTTCAATCCTATGAACCAAAGGAG 57.533 36.000 0.00 0.00 42.53 3.69
1636 10699 5.116084 TCAATCCTATGAACCAAAGGAGG 57.884 43.478 0.00 0.00 42.53 4.30
1637 10700 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
1638 10701 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
1639 10702 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
1640 10703 2.777692 CCTATGAACCAAAGGAGGCCTA 59.222 50.000 4.42 0.00 31.13 3.93
1641 10704 3.202151 CCTATGAACCAAAGGAGGCCTAA 59.798 47.826 4.42 0.00 31.13 2.69
1660 10723 7.121315 AGGCCTAAATTCAGAAGAATACAACAC 59.879 37.037 1.29 0.00 43.52 3.32
1734 10798 4.803426 GTCTCTCGGCCGGTGCTG 62.803 72.222 27.83 11.51 45.75 4.41
1795 10859 0.318762 CCTATCGGAGGCAAGGTAGC 59.681 60.000 0.00 0.00 38.96 3.58
1873 10944 6.192970 CCAGATGGGAGGAAATTGTATACT 57.807 41.667 4.17 0.00 40.01 2.12
1933 11004 5.220815 GGATCTGATGAGAGCAATCAAACAC 60.221 44.000 0.00 0.00 36.24 3.32
1944 11015 7.370383 AGAGCAATCAAACACGATTAACATTT 58.630 30.769 0.00 0.00 33.82 2.32
1945 11016 7.867403 AGAGCAATCAAACACGATTAACATTTT 59.133 29.630 0.00 0.00 33.82 1.82
1952 11023 9.746711 TCAAACACGATTAACATTTTTGTTTTG 57.253 25.926 0.00 0.00 34.35 2.44
1967 11038 4.252971 TGTTTTGACTTCTACTCCCTCG 57.747 45.455 0.00 0.00 0.00 4.63
1977 11048 3.428532 TCTACTCCCTCGCTTGTTTAGT 58.571 45.455 0.00 0.00 0.00 2.24
1995 11066 7.957002 TGTTTAGTTTGCCTTTAATGATTGGA 58.043 30.769 0.00 0.00 0.00 3.53
2017 11089 5.182570 GGATCTGTTTGGTTTTAGGTACCAC 59.817 44.000 15.94 2.78 45.00 4.16
2019 11091 5.697067 TCTGTTTGGTTTTAGGTACCACAT 58.303 37.500 15.94 0.00 45.00 3.21
2023 11095 4.295141 TGGTTTTAGGTACCACATCCAG 57.705 45.455 15.94 0.00 40.65 3.86
2041 11113 1.810755 CAGATGCAACAGCAGTGTCAT 59.189 47.619 0.00 0.00 42.36 3.06
2043 11115 2.486982 AGATGCAACAGCAGTGTCATTC 59.513 45.455 0.00 0.00 42.36 2.67
2051 11123 6.128172 GCAACAGCAGTGTCATTCTAAATACT 60.128 38.462 0.00 0.00 35.08 2.12
2052 11124 7.459486 CAACAGCAGTGTCATTCTAAATACTC 58.541 38.462 0.00 0.00 35.08 2.59
2053 11125 6.109359 ACAGCAGTGTCATTCTAAATACTCC 58.891 40.000 0.00 0.00 26.76 3.85
2054 11126 6.070538 ACAGCAGTGTCATTCTAAATACTCCT 60.071 38.462 0.00 0.00 26.76 3.69
2055 11127 6.820656 CAGCAGTGTCATTCTAAATACTCCTT 59.179 38.462 0.00 0.00 0.00 3.36
2056 11128 7.010923 CAGCAGTGTCATTCTAAATACTCCTTC 59.989 40.741 0.00 0.00 0.00 3.46
2057 11129 6.258947 GCAGTGTCATTCTAAATACTCCTTCC 59.741 42.308 0.00 0.00 0.00 3.46
2058 11130 6.477033 CAGTGTCATTCTAAATACTCCTTCCG 59.523 42.308 0.00 0.00 0.00 4.30
2059 11131 6.154706 AGTGTCATTCTAAATACTCCTTCCGT 59.845 38.462 0.00 0.00 0.00 4.69
2060 11132 6.476053 GTGTCATTCTAAATACTCCTTCCGTC 59.524 42.308 0.00 0.00 0.00 4.79
2061 11133 6.380274 TGTCATTCTAAATACTCCTTCCGTCT 59.620 38.462 0.00 0.00 0.00 4.18
2062 11134 7.558807 TGTCATTCTAAATACTCCTTCCGTCTA 59.441 37.037 0.00 0.00 0.00 2.59
2063 11135 8.077386 GTCATTCTAAATACTCCTTCCGTCTAG 58.923 40.741 0.00 0.00 0.00 2.43
2064 11136 7.997223 TCATTCTAAATACTCCTTCCGTCTAGA 59.003 37.037 0.00 0.00 0.00 2.43
2065 11137 8.798402 CATTCTAAATACTCCTTCCGTCTAGAT 58.202 37.037 0.00 0.00 0.00 1.98
2066 11138 7.747155 TCTAAATACTCCTTCCGTCTAGATG 57.253 40.000 4.85 4.85 0.00 2.90
2067 11139 7.288560 TCTAAATACTCCTTCCGTCTAGATGT 58.711 38.462 11.03 0.00 0.00 3.06
2068 11140 5.776173 AATACTCCTTCCGTCTAGATGTG 57.224 43.478 11.03 3.07 0.00 3.21
2069 11141 3.088789 ACTCCTTCCGTCTAGATGTGT 57.911 47.619 11.03 0.00 0.00 3.72
2070 11142 4.232188 ACTCCTTCCGTCTAGATGTGTA 57.768 45.455 11.03 0.00 0.00 2.90
2071 11143 4.597004 ACTCCTTCCGTCTAGATGTGTAA 58.403 43.478 11.03 2.11 0.00 2.41
2072 11144 4.641094 ACTCCTTCCGTCTAGATGTGTAAG 59.359 45.833 11.03 10.46 0.00 2.34
2073 11145 4.597004 TCCTTCCGTCTAGATGTGTAAGT 58.403 43.478 11.03 0.00 0.00 2.24
2074 11146 4.639310 TCCTTCCGTCTAGATGTGTAAGTC 59.361 45.833 11.03 0.00 0.00 3.01
2075 11147 4.398358 CCTTCCGTCTAGATGTGTAAGTCA 59.602 45.833 11.03 0.00 0.00 3.41
2076 11148 5.067936 CCTTCCGTCTAGATGTGTAAGTCAT 59.932 44.000 11.03 0.00 0.00 3.06
2077 11149 6.262496 CCTTCCGTCTAGATGTGTAAGTCATA 59.738 42.308 11.03 0.00 0.00 2.15
2078 11150 7.040340 CCTTCCGTCTAGATGTGTAAGTCATAT 60.040 40.741 11.03 0.00 0.00 1.78
2079 11151 7.818997 TCCGTCTAGATGTGTAAGTCATATT 57.181 36.000 11.03 0.00 0.00 1.28
2080 11152 8.913487 TCCGTCTAGATGTGTAAGTCATATTA 57.087 34.615 11.03 0.00 0.00 0.98
2081 11153 8.781196 TCCGTCTAGATGTGTAAGTCATATTAC 58.219 37.037 11.03 0.00 36.40 1.89
2082 11154 7.745155 CCGTCTAGATGTGTAAGTCATATTACG 59.255 40.741 11.03 0.00 38.28 3.18
2083 11155 8.493547 CGTCTAGATGTGTAAGTCATATTACGA 58.506 37.037 3.59 0.00 38.28 3.43
2099 11171 9.839817 TCATATTACGAAAATCAAATAGTCCCA 57.160 29.630 0.00 0.00 0.00 4.37
2106 11178 9.020731 ACGAAAATCAAATAGTCCCAAAATACT 57.979 29.630 0.00 0.00 0.00 2.12
2107 11179 9.855021 CGAAAATCAAATAGTCCCAAAATACTT 57.145 29.630 0.00 0.00 0.00 2.24
2115 11187 8.980481 AATAGTCCCAAAATACTTAGACATGG 57.020 34.615 0.00 0.00 0.00 3.66
2116 11188 6.388619 AGTCCCAAAATACTTAGACATGGT 57.611 37.500 0.00 0.00 0.00 3.55
2117 11189 6.180472 AGTCCCAAAATACTTAGACATGGTG 58.820 40.000 0.00 0.00 0.00 4.17
2118 11190 4.947388 TCCCAAAATACTTAGACATGGTGC 59.053 41.667 0.00 0.00 0.00 5.01
2119 11191 4.704540 CCCAAAATACTTAGACATGGTGCA 59.295 41.667 0.00 0.00 0.00 4.57
2120 11192 5.360714 CCCAAAATACTTAGACATGGTGCAT 59.639 40.000 0.00 0.00 0.00 3.96
2121 11193 6.127366 CCCAAAATACTTAGACATGGTGCATT 60.127 38.462 0.00 0.00 0.00 3.56
2122 11194 6.753279 CCAAAATACTTAGACATGGTGCATTG 59.247 38.462 0.00 0.00 0.00 2.82
2123 11195 7.362834 CCAAAATACTTAGACATGGTGCATTGA 60.363 37.037 0.00 0.00 0.00 2.57
2124 11196 6.683974 AATACTTAGACATGGTGCATTGAC 57.316 37.500 0.00 0.00 0.00 3.18
2125 11197 4.292186 ACTTAGACATGGTGCATTGACT 57.708 40.909 0.00 0.00 0.00 3.41
2126 11198 4.655963 ACTTAGACATGGTGCATTGACTT 58.344 39.130 0.00 0.00 0.00 3.01
2127 11199 4.697352 ACTTAGACATGGTGCATTGACTTC 59.303 41.667 0.00 0.00 0.00 3.01
2128 11200 3.430042 AGACATGGTGCATTGACTTCT 57.570 42.857 0.00 0.00 0.00 2.85
2129 11201 4.558226 AGACATGGTGCATTGACTTCTA 57.442 40.909 0.00 0.00 0.00 2.10
2130 11202 4.256920 AGACATGGTGCATTGACTTCTAC 58.743 43.478 0.00 0.00 0.00 2.59
2131 11203 4.002982 GACATGGTGCATTGACTTCTACA 58.997 43.478 0.00 0.00 0.00 2.74
2132 11204 4.592942 ACATGGTGCATTGACTTCTACAT 58.407 39.130 0.00 0.00 0.00 2.29
2133 11205 5.012239 ACATGGTGCATTGACTTCTACATT 58.988 37.500 0.00 0.00 0.00 2.71
2134 11206 5.106038 ACATGGTGCATTGACTTCTACATTG 60.106 40.000 0.00 0.00 0.00 2.82
2135 11207 4.397420 TGGTGCATTGACTTCTACATTGT 58.603 39.130 0.00 0.00 0.00 2.71
2136 11208 4.826733 TGGTGCATTGACTTCTACATTGTT 59.173 37.500 0.00 0.00 0.00 2.83
2137 11209 5.301551 TGGTGCATTGACTTCTACATTGTTT 59.698 36.000 0.00 0.00 0.00 2.83
2138 11210 6.183360 TGGTGCATTGACTTCTACATTGTTTT 60.183 34.615 0.00 0.00 0.00 2.43
2139 11211 6.701400 GGTGCATTGACTTCTACATTGTTTTT 59.299 34.615 0.00 0.00 0.00 1.94
2159 11231 6.959671 TTTTTGTTTCTTGACACATCAACC 57.040 33.333 0.00 0.00 40.01 3.77
2160 11232 5.651387 TTTGTTTCTTGACACATCAACCA 57.349 34.783 0.00 0.00 40.01 3.67
2161 11233 5.651387 TTGTTTCTTGACACATCAACCAA 57.349 34.783 0.00 0.00 40.01 3.67
2162 11234 5.850557 TGTTTCTTGACACATCAACCAAT 57.149 34.783 0.00 0.00 40.01 3.16
2163 11235 6.951062 TGTTTCTTGACACATCAACCAATA 57.049 33.333 0.00 0.00 40.01 1.90
2164 11236 7.340122 TGTTTCTTGACACATCAACCAATAA 57.660 32.000 0.00 0.00 40.01 1.40
2165 11237 7.424803 TGTTTCTTGACACATCAACCAATAAG 58.575 34.615 0.00 0.00 40.01 1.73
2166 11238 7.284261 TGTTTCTTGACACATCAACCAATAAGA 59.716 33.333 0.00 0.00 40.01 2.10
2167 11239 7.439157 TTCTTGACACATCAACCAATAAGAG 57.561 36.000 0.00 0.00 40.01 2.85
2168 11240 6.768483 TCTTGACACATCAACCAATAAGAGA 58.232 36.000 0.00 0.00 40.01 3.10
2169 11241 7.397221 TCTTGACACATCAACCAATAAGAGAT 58.603 34.615 0.00 0.00 40.01 2.75
2170 11242 6.990341 TGACACATCAACCAATAAGAGATG 57.010 37.500 0.00 0.00 41.28 2.90
2171 11243 6.710278 TGACACATCAACCAATAAGAGATGA 58.290 36.000 7.62 0.00 38.62 2.92
2172 11244 6.820152 TGACACATCAACCAATAAGAGATGAG 59.180 38.462 7.62 2.73 38.62 2.90
2173 11245 6.118170 ACACATCAACCAATAAGAGATGAGG 58.882 40.000 7.62 2.72 38.62 3.86
2174 11246 5.530171 CACATCAACCAATAAGAGATGAGGG 59.470 44.000 7.62 0.00 38.62 4.30
2175 11247 4.778213 TCAACCAATAAGAGATGAGGGG 57.222 45.455 0.00 0.00 0.00 4.79
2176 11248 4.111577 TCAACCAATAAGAGATGAGGGGT 58.888 43.478 0.00 0.00 0.00 4.95
2177 11249 4.080356 TCAACCAATAAGAGATGAGGGGTG 60.080 45.833 0.00 0.00 32.98 4.61
2178 11250 3.464828 ACCAATAAGAGATGAGGGGTGT 58.535 45.455 0.00 0.00 0.00 4.16
2179 11251 3.200825 ACCAATAAGAGATGAGGGGTGTG 59.799 47.826 0.00 0.00 0.00 3.82
2180 11252 3.200825 CCAATAAGAGATGAGGGGTGTGT 59.799 47.826 0.00 0.00 0.00 3.72
2181 11253 4.408921 CCAATAAGAGATGAGGGGTGTGTA 59.591 45.833 0.00 0.00 0.00 2.90
2182 11254 5.072329 CCAATAAGAGATGAGGGGTGTGTAT 59.928 44.000 0.00 0.00 0.00 2.29
2183 11255 5.815233 ATAAGAGATGAGGGGTGTGTATG 57.185 43.478 0.00 0.00 0.00 2.39
2184 11256 1.765314 AGAGATGAGGGGTGTGTATGC 59.235 52.381 0.00 0.00 0.00 3.14
2185 11257 1.765314 GAGATGAGGGGTGTGTATGCT 59.235 52.381 0.00 0.00 0.00 3.79
2186 11258 2.171448 GAGATGAGGGGTGTGTATGCTT 59.829 50.000 0.00 0.00 0.00 3.91
2187 11259 2.578021 AGATGAGGGGTGTGTATGCTTT 59.422 45.455 0.00 0.00 0.00 3.51
2188 11260 2.969821 TGAGGGGTGTGTATGCTTTT 57.030 45.000 0.00 0.00 0.00 2.27
2189 11261 4.227300 AGATGAGGGGTGTGTATGCTTTTA 59.773 41.667 0.00 0.00 0.00 1.52
2190 11262 4.374689 TGAGGGGTGTGTATGCTTTTAA 57.625 40.909 0.00 0.00 0.00 1.52
2191 11263 4.929479 TGAGGGGTGTGTATGCTTTTAAT 58.071 39.130 0.00 0.00 0.00 1.40
2192 11264 4.704540 TGAGGGGTGTGTATGCTTTTAATG 59.295 41.667 0.00 0.00 0.00 1.90
2193 11265 4.023291 AGGGGTGTGTATGCTTTTAATGG 58.977 43.478 0.00 0.00 0.00 3.16
2194 11266 3.430236 GGGGTGTGTATGCTTTTAATGGC 60.430 47.826 0.00 0.00 0.00 4.40
2195 11267 3.447229 GGGTGTGTATGCTTTTAATGGCT 59.553 43.478 2.67 0.00 0.00 4.75
2196 11268 4.081697 GGGTGTGTATGCTTTTAATGGCTT 60.082 41.667 2.67 0.00 0.00 4.35
2197 11269 4.864247 GGTGTGTATGCTTTTAATGGCTTG 59.136 41.667 2.67 0.00 0.00 4.01
2198 11270 5.336372 GGTGTGTATGCTTTTAATGGCTTGA 60.336 40.000 2.67 0.00 0.00 3.02
2199 11271 5.801947 GTGTGTATGCTTTTAATGGCTTGAG 59.198 40.000 2.67 0.00 0.00 3.02
2200 11272 5.709631 TGTGTATGCTTTTAATGGCTTGAGA 59.290 36.000 2.67 0.00 0.00 3.27
2201 11273 6.377996 TGTGTATGCTTTTAATGGCTTGAGAT 59.622 34.615 2.67 0.00 0.00 2.75
2202 11274 7.093814 TGTGTATGCTTTTAATGGCTTGAGATT 60.094 33.333 2.67 0.00 0.00 2.40
2203 11275 8.405531 GTGTATGCTTTTAATGGCTTGAGATTA 58.594 33.333 2.67 0.00 0.00 1.75
2204 11276 8.405531 TGTATGCTTTTAATGGCTTGAGATTAC 58.594 33.333 2.67 0.00 0.00 1.89
2205 11277 6.207691 TGCTTTTAATGGCTTGAGATTACC 57.792 37.500 2.67 0.00 0.00 2.85
2206 11278 5.714333 TGCTTTTAATGGCTTGAGATTACCA 59.286 36.000 0.00 0.00 36.43 3.25
2207 11279 6.210385 TGCTTTTAATGGCTTGAGATTACCAA 59.790 34.615 0.00 0.00 35.41 3.67
2208 11280 7.096551 GCTTTTAATGGCTTGAGATTACCAAA 58.903 34.615 0.00 0.00 35.41 3.28
2209 11281 7.063426 GCTTTTAATGGCTTGAGATTACCAAAC 59.937 37.037 0.00 0.00 35.41 2.93
2210 11282 7.531857 TTTAATGGCTTGAGATTACCAAACA 57.468 32.000 0.00 0.00 35.41 2.83
2211 11283 5.391312 AATGGCTTGAGATTACCAAACAC 57.609 39.130 0.00 0.00 35.41 3.32
2212 11284 2.811431 TGGCTTGAGATTACCAAACACG 59.189 45.455 0.00 0.00 0.00 4.49
2213 11285 3.071479 GGCTTGAGATTACCAAACACGA 58.929 45.455 0.00 0.00 0.00 4.35
2214 11286 3.120304 GGCTTGAGATTACCAAACACGAC 60.120 47.826 0.00 0.00 0.00 4.34
2215 11287 3.496884 GCTTGAGATTACCAAACACGACA 59.503 43.478 0.00 0.00 0.00 4.35
2216 11288 4.154195 GCTTGAGATTACCAAACACGACAT 59.846 41.667 0.00 0.00 0.00 3.06
2217 11289 5.605564 TTGAGATTACCAAACACGACATG 57.394 39.130 0.00 0.00 0.00 3.21
2218 11290 3.435327 TGAGATTACCAAACACGACATGC 59.565 43.478 0.00 0.00 0.00 4.06
2219 11291 3.407698 AGATTACCAAACACGACATGCA 58.592 40.909 0.00 0.00 0.00 3.96
2220 11292 3.436704 AGATTACCAAACACGACATGCAG 59.563 43.478 0.00 0.00 0.00 4.41
2221 11293 2.248280 TACCAAACACGACATGCAGT 57.752 45.000 0.00 0.00 0.00 4.40
2222 11294 0.662619 ACCAAACACGACATGCAGTG 59.337 50.000 16.62 16.62 43.46 3.66
2223 11295 0.040157 CCAAACACGACATGCAGTGG 60.040 55.000 20.60 3.36 42.25 4.00
2224 11296 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
2225 11297 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
2226 11298 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
2227 11299 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
2228 11300 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
2229 11301 2.143122 CACGACATGCAGTGGTTAGTT 58.857 47.619 11.93 0.00 37.03 2.24
2230 11302 2.157668 CACGACATGCAGTGGTTAGTTC 59.842 50.000 11.93 0.00 37.03 3.01
2231 11303 2.224185 ACGACATGCAGTGGTTAGTTCA 60.224 45.455 0.00 0.00 35.47 3.18
2232 11304 3.002791 CGACATGCAGTGGTTAGTTCAT 58.997 45.455 0.00 0.00 0.00 2.57
2233 11305 3.436704 CGACATGCAGTGGTTAGTTCATT 59.563 43.478 0.00 0.00 0.00 2.57
2234 11306 4.669965 CGACATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
2235 11307 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
2237 11309 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
2238 11310 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
2239 11311 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
2240 11312 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
2241 11313 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
2242 11314 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
2285 11357 6.510879 ACATTAAAATCTCTCGTTTTCCCC 57.489 37.500 0.00 0.00 31.71 4.81
2286 11358 6.246163 ACATTAAAATCTCTCGTTTTCCCCT 58.754 36.000 0.00 0.00 31.71 4.79
2287 11359 6.374613 ACATTAAAATCTCTCGTTTTCCCCTC 59.625 38.462 0.00 0.00 31.71 4.30
2288 11360 3.351794 AAATCTCTCGTTTTCCCCTCC 57.648 47.619 0.00 0.00 0.00 4.30
2289 11361 2.255770 ATCTCTCGTTTTCCCCTCCT 57.744 50.000 0.00 0.00 0.00 3.69
2290 11362 1.558233 TCTCTCGTTTTCCCCTCCTC 58.442 55.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.738147 CGAGTCACGGGCTACAAAG 58.262 57.895 0.00 0.00 38.46 2.77
18 19 4.979204 CGAGTCACGGGCTACAAA 57.021 55.556 0.00 0.00 38.46 2.83
27 28 2.276493 CGTACTCGCCGAGTCACG 60.276 66.667 24.89 24.21 42.40 4.35
28 29 2.099831 CCGTACTCGCCGAGTCAC 59.900 66.667 24.89 17.68 42.40 3.67
29 30 3.807538 GCCGTACTCGCCGAGTCA 61.808 66.667 24.89 7.65 42.40 3.41
30 31 4.549516 GGCCGTACTCGCCGAGTC 62.550 72.222 24.89 14.03 42.40 3.36
32 33 4.253257 GAGGCCGTACTCGCCGAG 62.253 72.222 13.52 13.52 37.94 4.63
33 34 4.790962 AGAGGCCGTACTCGCCGA 62.791 66.667 13.42 0.00 42.31 5.54
34 35 2.830704 AAAAGAGGCCGTACTCGCCG 62.831 60.000 13.42 0.00 42.31 6.46
35 36 0.672711 AAAAAGAGGCCGTACTCGCC 60.673 55.000 11.83 11.83 42.31 5.54
36 37 0.442699 CAAAAAGAGGCCGTACTCGC 59.557 55.000 0.00 0.00 42.31 5.03
37 38 1.076332 CCAAAAAGAGGCCGTACTCG 58.924 55.000 0.00 0.00 42.31 4.18
38 39 2.180432 ACCAAAAAGAGGCCGTACTC 57.820 50.000 0.00 0.00 37.77 2.59
39 40 2.227194 CAACCAAAAAGAGGCCGTACT 58.773 47.619 0.00 0.00 0.00 2.73
40 41 1.951602 ACAACCAAAAAGAGGCCGTAC 59.048 47.619 0.00 0.00 0.00 3.67
90 101 2.303175 GACCACAACAAACCTTGGCTA 58.697 47.619 0.00 0.00 31.76 3.93
119 142 3.121030 CTTGGAAGCACTCGCGGG 61.121 66.667 3.27 3.27 45.49 6.13
170 196 0.179026 CGGGAGGAGGTCGACATCTA 60.179 60.000 27.24 0.00 0.00 1.98
233 261 1.002315 GGGCACACCTTTTACCGAGTA 59.998 52.381 0.00 0.00 35.85 2.59
234 262 0.250597 GGGCACACCTTTTACCGAGT 60.251 55.000 0.00 0.00 35.85 4.18
239 378 0.111639 TCCTGGGGCACACCTTTTAC 59.888 55.000 0.00 0.00 40.03 2.01
240 379 0.404040 CTCCTGGGGCACACCTTTTA 59.596 55.000 0.00 0.00 40.03 1.52
246 385 2.607750 TCTCCTCCTGGGGCACAC 60.608 66.667 0.00 0.00 32.58 3.82
249 388 3.615811 AGGTCTCCTCCTGGGGCA 61.616 66.667 0.00 0.00 36.35 5.36
280 419 2.833631 AGTACACCGGTCTTTCTTGG 57.166 50.000 2.59 0.00 0.00 3.61
296 458 1.913778 TTGGCACTCACCTCGTAGTA 58.086 50.000 0.00 0.00 0.00 1.82
300 462 1.003355 CCATTGGCACTCACCTCGT 60.003 57.895 0.00 0.00 0.00 4.18
301 463 0.321564 TTCCATTGGCACTCACCTCG 60.322 55.000 0.00 0.00 0.00 4.63
372 537 1.551452 AGCTAGCTCGGGGATCATAC 58.449 55.000 12.68 0.00 0.00 2.39
373 538 3.451402 TTAGCTAGCTCGGGGATCATA 57.549 47.619 23.26 0.00 0.00 2.15
375 540 1.687123 GTTTAGCTAGCTCGGGGATCA 59.313 52.381 23.26 0.00 0.00 2.92
414 618 4.351874 TCAGCTGTTTAACTAGCCAAGT 57.648 40.909 14.67 0.00 40.76 3.16
538 3245 1.089920 AGAGCAGCAATTAAGTGCCG 58.910 50.000 23.17 15.16 46.14 5.69
550 5302 6.672147 TGAAGAAAAGAAAATACAGAGCAGC 58.328 36.000 0.00 0.00 0.00 5.25
602 5521 0.106868 GGTACCCCACATGGTTAGCC 60.107 60.000 0.00 0.00 39.91 3.93
603 5522 0.916809 AGGTACCCCACATGGTTAGC 59.083 55.000 8.74 0.00 39.91 3.09
618 5582 2.172679 TGCCAACATACGAGACAGGTA 58.827 47.619 0.00 0.00 0.00 3.08
657 8548 3.870007 CGCTAATGCTTAGTGCTGATTG 58.130 45.455 4.34 0.00 43.37 2.67
694 8849 7.043961 TGTGTGAGTATAAGATTAGGCAGAG 57.956 40.000 0.00 0.00 0.00 3.35
695 8850 7.124298 ACTTGTGTGAGTATAAGATTAGGCAGA 59.876 37.037 0.00 0.00 0.00 4.26
822 9614 3.090219 GCTATGTCCGGGCGAGGTT 62.090 63.158 0.00 0.00 0.00 3.50
854 9647 1.276705 GGAGTGGAGGTCTCAGGAAAC 59.723 57.143 0.14 0.00 34.04 2.78
939 9984 3.505464 GCAAAATGCTGAGCAGAGATT 57.495 42.857 14.36 0.00 43.65 2.40
1302 10365 4.097135 TGTCGATCCAAGCAAAACTTTCAA 59.903 37.500 0.00 0.00 36.04 2.69
1334 10397 0.969149 CCTCCAAACCAAAGAAGGCC 59.031 55.000 0.00 0.00 0.00 5.19
1335 10398 1.995376 TCCTCCAAACCAAAGAAGGC 58.005 50.000 0.00 0.00 0.00 4.35
1336 10399 5.551305 AAATTCCTCCAAACCAAAGAAGG 57.449 39.130 0.00 0.00 0.00 3.46
1337 10400 9.860898 CTATAAAATTCCTCCAAACCAAAGAAG 57.139 33.333 0.00 0.00 0.00 2.85
1338 10401 8.811994 CCTATAAAATTCCTCCAAACCAAAGAA 58.188 33.333 0.00 0.00 0.00 2.52
1339 10402 8.174085 TCCTATAAAATTCCTCCAAACCAAAGA 58.826 33.333 0.00 0.00 0.00 2.52
1340 10403 8.361169 TCCTATAAAATTCCTCCAAACCAAAG 57.639 34.615 0.00 0.00 0.00 2.77
1341 10404 8.909423 ATCCTATAAAATTCCTCCAAACCAAA 57.091 30.769 0.00 0.00 0.00 3.28
1342 10405 8.909423 AATCCTATAAAATTCCTCCAAACCAA 57.091 30.769 0.00 0.00 0.00 3.67
1343 10406 8.909423 AAATCCTATAAAATTCCTCCAAACCA 57.091 30.769 0.00 0.00 0.00 3.67
1344 10407 9.817809 GAAAATCCTATAAAATTCCTCCAAACC 57.182 33.333 0.00 0.00 0.00 3.27
1391 10454 6.155136 CCAAAGAGCTCTGAAGGAATTTTTC 58.845 40.000 19.06 0.00 0.00 2.29
1392 10455 5.600069 ACCAAAGAGCTCTGAAGGAATTTTT 59.400 36.000 27.00 9.59 0.00 1.94
1393 10456 5.143369 ACCAAAGAGCTCTGAAGGAATTTT 58.857 37.500 27.00 10.23 0.00 1.82
1394 10457 4.734266 ACCAAAGAGCTCTGAAGGAATTT 58.266 39.130 27.00 10.86 0.00 1.82
1395 10458 4.379302 ACCAAAGAGCTCTGAAGGAATT 57.621 40.909 27.00 11.51 0.00 2.17
1396 10459 4.379302 AACCAAAGAGCTCTGAAGGAAT 57.621 40.909 27.00 16.39 0.00 3.01
1397 10460 3.864789 AACCAAAGAGCTCTGAAGGAA 57.135 42.857 27.00 0.00 0.00 3.36
1398 10461 3.117888 ACAAACCAAAGAGCTCTGAAGGA 60.118 43.478 27.00 0.00 0.00 3.36
1399 10462 3.217626 ACAAACCAAAGAGCTCTGAAGG 58.782 45.455 19.06 20.58 0.00 3.46
1400 10463 4.453819 CCTACAAACCAAAGAGCTCTGAAG 59.546 45.833 19.06 11.19 0.00 3.02
1401 10464 4.102524 TCCTACAAACCAAAGAGCTCTGAA 59.897 41.667 19.06 0.00 0.00 3.02
1402 10465 3.646162 TCCTACAAACCAAAGAGCTCTGA 59.354 43.478 19.06 2.19 0.00 3.27
1403 10466 4.008074 TCCTACAAACCAAAGAGCTCTG 57.992 45.455 19.06 7.57 0.00 3.35
1404 10467 4.706842 TTCCTACAAACCAAAGAGCTCT 57.293 40.909 11.45 11.45 0.00 4.09
1405 10468 5.003804 TCATTCCTACAAACCAAAGAGCTC 58.996 41.667 5.27 5.27 0.00 4.09
1406 10469 4.985538 TCATTCCTACAAACCAAAGAGCT 58.014 39.130 0.00 0.00 0.00 4.09
1407 10470 5.705609 TTCATTCCTACAAACCAAAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
1408 10471 7.177392 AGGATTTCATTCCTACAAACCAAAGAG 59.823 37.037 0.00 0.00 44.50 2.85
1409 10472 7.010160 AGGATTTCATTCCTACAAACCAAAGA 58.990 34.615 0.00 0.00 44.50 2.52
1410 10473 7.232118 AGGATTTCATTCCTACAAACCAAAG 57.768 36.000 0.00 0.00 44.50 2.77
1423 10486 7.659652 CCTTCGTAGGAATAGGATTTCATTC 57.340 40.000 0.98 0.00 45.05 2.67
1438 10501 7.056844 AGGATAGAAAGAATTCCTTCGTAGG 57.943 40.000 10.44 0.79 43.46 3.18
1439 10502 8.198109 TGAAGGATAGAAAGAATTCCTTCGTAG 58.802 37.037 19.94 0.00 36.12 3.51
1440 10503 7.980099 GTGAAGGATAGAAAGAATTCCTTCGTA 59.020 37.037 19.94 6.36 36.12 3.43
1441 10504 6.819146 GTGAAGGATAGAAAGAATTCCTTCGT 59.181 38.462 19.94 4.74 36.12 3.85
1442 10505 6.818644 TGTGAAGGATAGAAAGAATTCCTTCG 59.181 38.462 19.94 0.00 36.12 3.79
1443 10506 8.744568 ATGTGAAGGATAGAAAGAATTCCTTC 57.255 34.615 19.00 19.00 36.12 3.46
1444 10507 9.539194 AAATGTGAAGGATAGAAAGAATTCCTT 57.461 29.630 0.65 2.83 36.12 3.36
1445 10508 9.183368 GAAATGTGAAGGATAGAAAGAATTCCT 57.817 33.333 0.65 0.00 36.12 3.36
1446 10509 8.960591 TGAAATGTGAAGGATAGAAAGAATTCC 58.039 33.333 0.65 0.00 36.12 3.01
1450 10513 9.618890 CCTATGAAATGTGAAGGATAGAAAGAA 57.381 33.333 0.00 0.00 0.00 2.52
1451 10514 8.992349 TCCTATGAAATGTGAAGGATAGAAAGA 58.008 33.333 0.00 0.00 31.41 2.52
1452 10515 9.618890 TTCCTATGAAATGTGAAGGATAGAAAG 57.381 33.333 0.00 0.00 36.28 2.62
1453 10516 9.973661 TTTCCTATGAAATGTGAAGGATAGAAA 57.026 29.630 0.00 0.00 36.28 2.52
1454 10517 9.973661 TTTTCCTATGAAATGTGAAGGATAGAA 57.026 29.630 0.00 0.00 40.08 2.10
1474 10537 9.975218 TGAGTCTAGGCTAATTTTTATTTTCCT 57.025 29.630 0.00 0.00 0.00 3.36
1506 10569 7.454380 TCCTTTGATTCACACCATAGGATTTTT 59.546 33.333 0.00 0.00 36.21 1.94
1507 10570 6.953520 TCCTTTGATTCACACCATAGGATTTT 59.046 34.615 0.00 0.00 36.21 1.82
1508 10571 6.378280 GTCCTTTGATTCACACCATAGGATTT 59.622 38.462 0.00 0.00 40.71 2.17
1509 10572 5.888161 GTCCTTTGATTCACACCATAGGATT 59.112 40.000 0.00 0.00 40.71 3.01
1510 10573 5.044919 TGTCCTTTGATTCACACCATAGGAT 60.045 40.000 0.00 0.00 40.71 3.24
1511 10574 4.288366 TGTCCTTTGATTCACACCATAGGA 59.712 41.667 0.00 0.00 37.90 2.94
1512 10575 4.588899 TGTCCTTTGATTCACACCATAGG 58.411 43.478 0.00 0.00 34.26 2.57
1513 10576 6.118170 AGATGTCCTTTGATTCACACCATAG 58.882 40.000 0.00 0.00 0.00 2.23
1514 10577 6.065976 AGATGTCCTTTGATTCACACCATA 57.934 37.500 0.00 0.00 0.00 2.74
1515 10578 4.927049 AGATGTCCTTTGATTCACACCAT 58.073 39.130 0.00 0.00 0.00 3.55
1516 10579 4.326826 GAGATGTCCTTTGATTCACACCA 58.673 43.478 0.00 0.00 0.00 4.17
1517 10580 3.691609 GGAGATGTCCTTTGATTCACACC 59.308 47.826 0.54 0.00 40.17 4.16
1518 10581 4.954092 GGAGATGTCCTTTGATTCACAC 57.046 45.455 0.54 0.00 40.17 3.82
1530 10593 7.716998 TGCATAGAAATAGAAAAGGAGATGTCC 59.283 37.037 0.00 0.00 44.33 4.02
1531 10594 8.668510 TGCATAGAAATAGAAAAGGAGATGTC 57.331 34.615 0.00 0.00 0.00 3.06
1554 10617 6.068473 TGACATGCATCTCAAATCTTATGC 57.932 37.500 1.73 0.00 43.92 3.14
1568 10631 3.272574 AGGAAACGAGATGACATGCAT 57.727 42.857 0.00 0.00 40.77 3.96
1569 10632 2.768253 AGGAAACGAGATGACATGCA 57.232 45.000 0.00 0.00 0.00 3.96
1570 10633 4.210120 GTCATAGGAAACGAGATGACATGC 59.790 45.833 8.58 0.00 43.42 4.06
1571 10634 5.595885 AGTCATAGGAAACGAGATGACATG 58.404 41.667 14.37 0.00 44.92 3.21
1572 10635 5.860941 AGTCATAGGAAACGAGATGACAT 57.139 39.130 14.37 0.00 44.92 3.06
1573 10636 5.661056 AAGTCATAGGAAACGAGATGACA 57.339 39.130 14.37 0.00 44.92 3.58
1574 10637 6.814146 AGAAAAGTCATAGGAAACGAGATGAC 59.186 38.462 5.86 5.86 43.86 3.06
1575 10638 6.936279 AGAAAAGTCATAGGAAACGAGATGA 58.064 36.000 0.00 0.00 0.00 2.92
1576 10639 8.879342 ATAGAAAAGTCATAGGAAACGAGATG 57.121 34.615 0.00 0.00 0.00 2.90
1577 10640 9.535878 GAATAGAAAAGTCATAGGAAACGAGAT 57.464 33.333 0.00 0.00 0.00 2.75
1578 10641 7.980099 GGAATAGAAAAGTCATAGGAAACGAGA 59.020 37.037 0.00 0.00 0.00 4.04
1579 10642 7.982354 AGGAATAGAAAAGTCATAGGAAACGAG 59.018 37.037 0.00 0.00 0.00 4.18
1580 10643 7.848128 AGGAATAGAAAAGTCATAGGAAACGA 58.152 34.615 0.00 0.00 0.00 3.85
1581 10644 9.765795 ATAGGAATAGAAAAGTCATAGGAAACG 57.234 33.333 0.00 0.00 0.00 3.60
1602 10665 9.354673 GGTTCATAGGATTGAAAAATCATAGGA 57.645 33.333 4.08 4.08 37.36 2.94
1603 10666 9.135189 TGGTTCATAGGATTGAAAAATCATAGG 57.865 33.333 1.28 0.58 37.36 2.57
1606 10669 9.880157 CTTTGGTTCATAGGATTGAAAAATCAT 57.120 29.630 1.28 0.00 37.36 2.45
1607 10670 8.313292 CCTTTGGTTCATAGGATTGAAAAATCA 58.687 33.333 0.00 0.00 37.36 2.57
1608 10671 8.531146 TCCTTTGGTTCATAGGATTGAAAAATC 58.469 33.333 3.54 0.00 36.84 2.17
1609 10672 8.434589 TCCTTTGGTTCATAGGATTGAAAAAT 57.565 30.769 3.54 0.00 36.84 1.82
1610 10673 7.039082 CCTCCTTTGGTTCATAGGATTGAAAAA 60.039 37.037 7.38 0.00 39.94 1.94
1611 10674 6.437162 CCTCCTTTGGTTCATAGGATTGAAAA 59.563 38.462 7.38 0.00 39.94 2.29
1612 10675 5.951747 CCTCCTTTGGTTCATAGGATTGAAA 59.048 40.000 7.38 0.00 39.94 2.69
1613 10676 5.509498 CCTCCTTTGGTTCATAGGATTGAA 58.491 41.667 7.38 0.00 39.94 2.69
1614 10677 4.628715 GCCTCCTTTGGTTCATAGGATTGA 60.629 45.833 7.38 0.00 39.94 2.57
1615 10678 3.633986 GCCTCCTTTGGTTCATAGGATTG 59.366 47.826 7.38 4.49 39.94 2.67
1616 10679 3.373110 GGCCTCCTTTGGTTCATAGGATT 60.373 47.826 0.00 0.00 39.94 3.01
1617 10680 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
1618 10681 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
1619 10682 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
1620 10683 4.503714 TTAGGCCTCCTTTGGTTCATAG 57.496 45.455 9.68 0.00 34.61 2.23
1621 10684 4.938575 TTTAGGCCTCCTTTGGTTCATA 57.061 40.909 9.68 0.00 34.61 2.15
1622 10685 3.825908 TTTAGGCCTCCTTTGGTTCAT 57.174 42.857 9.68 0.00 34.61 2.57
1623 10686 3.825908 ATTTAGGCCTCCTTTGGTTCA 57.174 42.857 9.68 0.00 34.61 3.18
1624 10687 4.086457 TGAATTTAGGCCTCCTTTGGTTC 58.914 43.478 9.68 6.27 34.61 3.62
1625 10688 4.089361 CTGAATTTAGGCCTCCTTTGGTT 58.911 43.478 9.68 0.00 34.61 3.67
1626 10689 3.333680 TCTGAATTTAGGCCTCCTTTGGT 59.666 43.478 9.68 0.00 34.61 3.67
1627 10690 3.968265 TCTGAATTTAGGCCTCCTTTGG 58.032 45.455 9.68 0.00 34.61 3.28
1628 10691 5.256474 TCTTCTGAATTTAGGCCTCCTTTG 58.744 41.667 9.68 0.00 34.61 2.77
1629 10692 5.520748 TCTTCTGAATTTAGGCCTCCTTT 57.479 39.130 9.68 0.00 34.61 3.11
1630 10693 5.520748 TTCTTCTGAATTTAGGCCTCCTT 57.479 39.130 9.68 0.17 34.61 3.36
1631 10694 5.723860 ATTCTTCTGAATTTAGGCCTCCT 57.276 39.130 9.68 0.00 39.68 3.69
1632 10695 6.357367 TGTATTCTTCTGAATTTAGGCCTCC 58.643 40.000 9.68 0.00 42.37 4.30
1633 10696 7.336931 TGTTGTATTCTTCTGAATTTAGGCCTC 59.663 37.037 9.68 0.00 42.37 4.70
1634 10697 7.121315 GTGTTGTATTCTTCTGAATTTAGGCCT 59.879 37.037 11.78 11.78 42.37 5.19
1635 10698 7.251281 GTGTTGTATTCTTCTGAATTTAGGCC 58.749 38.462 0.00 0.00 42.37 5.19
1636 10699 7.121315 AGGTGTTGTATTCTTCTGAATTTAGGC 59.879 37.037 0.00 0.00 42.37 3.93
1637 10700 8.454106 CAGGTGTTGTATTCTTCTGAATTTAGG 58.546 37.037 0.00 0.00 42.37 2.69
1638 10701 9.003658 ACAGGTGTTGTATTCTTCTGAATTTAG 57.996 33.333 0.00 0.00 42.37 1.85
1639 10702 8.918202 ACAGGTGTTGTATTCTTCTGAATTTA 57.082 30.769 0.00 0.00 42.37 1.40
1640 10703 7.823745 ACAGGTGTTGTATTCTTCTGAATTT 57.176 32.000 0.00 0.00 42.37 1.82
1641 10704 7.040409 GGAACAGGTGTTGTATTCTTCTGAATT 60.040 37.037 0.00 0.00 38.16 2.17
1696 10759 1.531470 GGAGACGACGACGATTCTTCC 60.531 57.143 15.32 8.97 42.66 3.46
1734 10798 2.682494 TCCACCGGACCAGGCTAC 60.682 66.667 9.46 0.00 33.69 3.58
1780 10844 4.143333 GCGCTACCTTGCCTCCGA 62.143 66.667 0.00 0.00 0.00 4.55
1781 10845 4.451150 TGCGCTACCTTGCCTCCG 62.451 66.667 9.73 0.00 0.00 4.63
1792 10856 2.202974 CCTGATGCTGCTGCGCTA 60.203 61.111 9.73 0.00 43.34 4.26
1870 10941 4.431809 TGTTTTCGACCGAGAACAAAGTA 58.568 39.130 20.93 3.28 43.22 2.24
1871 10942 3.264104 TGTTTTCGACCGAGAACAAAGT 58.736 40.909 20.93 0.00 43.22 2.66
1872 10943 3.554324 TCTGTTTTCGACCGAGAACAAAG 59.446 43.478 22.53 15.13 44.68 2.77
1873 10944 3.523547 TCTGTTTTCGACCGAGAACAAA 58.476 40.909 22.53 12.16 44.68 2.83
1944 11015 5.054477 CGAGGGAGTAGAAGTCAAAACAAA 58.946 41.667 0.00 0.00 0.00 2.83
1945 11016 4.628074 CGAGGGAGTAGAAGTCAAAACAA 58.372 43.478 0.00 0.00 0.00 2.83
1952 11023 1.819903 ACAAGCGAGGGAGTAGAAGTC 59.180 52.381 0.00 0.00 0.00 3.01
1967 11038 7.889589 ATCATTAAAGGCAAACTAAACAAGC 57.110 32.000 0.00 0.00 0.00 4.01
1977 11048 6.855763 ACAGATCCAATCATTAAAGGCAAA 57.144 33.333 0.00 0.00 0.00 3.68
2009 11081 1.583556 TGCATCTGGATGTGGTACCT 58.416 50.000 14.36 0.00 40.80 3.08
2041 11113 7.778853 ACATCTAGACGGAAGGAGTATTTAGAA 59.221 37.037 0.00 0.00 0.00 2.10
2043 11115 7.013464 ACACATCTAGACGGAAGGAGTATTTAG 59.987 40.741 0.00 0.00 0.00 1.85
2051 11123 4.597004 ACTTACACATCTAGACGGAAGGA 58.403 43.478 12.83 0.00 0.00 3.36
2052 11124 4.398358 TGACTTACACATCTAGACGGAAGG 59.602 45.833 12.83 0.00 0.00 3.46
2053 11125 5.562506 TGACTTACACATCTAGACGGAAG 57.437 43.478 0.00 1.75 0.00 3.46
2054 11126 7.818997 ATATGACTTACACATCTAGACGGAA 57.181 36.000 0.00 0.00 0.00 4.30
2055 11127 7.818997 AATATGACTTACACATCTAGACGGA 57.181 36.000 0.00 0.00 0.00 4.69
2056 11128 7.745155 CGTAATATGACTTACACATCTAGACGG 59.255 40.741 0.00 0.00 32.27 4.79
2057 11129 8.493547 TCGTAATATGACTTACACATCTAGACG 58.506 37.037 0.00 0.00 32.27 4.18
2073 11145 9.839817 TGGGACTATTTGATTTTCGTAATATGA 57.160 29.630 0.00 0.00 0.00 2.15
2080 11152 9.020731 AGTATTTTGGGACTATTTGATTTTCGT 57.979 29.630 0.00 0.00 0.00 3.85
2081 11153 9.855021 AAGTATTTTGGGACTATTTGATTTTCG 57.145 29.630 0.00 0.00 0.00 3.46
2089 11161 9.408648 CCATGTCTAAGTATTTTGGGACTATTT 57.591 33.333 0.00 0.00 0.00 1.40
2090 11162 8.557450 ACCATGTCTAAGTATTTTGGGACTATT 58.443 33.333 0.00 0.00 0.00 1.73
2091 11163 7.993183 CACCATGTCTAAGTATTTTGGGACTAT 59.007 37.037 0.00 0.00 0.00 2.12
2092 11164 7.335627 CACCATGTCTAAGTATTTTGGGACTA 58.664 38.462 0.00 0.00 0.00 2.59
2093 11165 6.180472 CACCATGTCTAAGTATTTTGGGACT 58.820 40.000 0.00 0.00 0.00 3.85
2094 11166 5.163652 GCACCATGTCTAAGTATTTTGGGAC 60.164 44.000 0.00 0.00 0.00 4.46
2095 11167 4.947388 GCACCATGTCTAAGTATTTTGGGA 59.053 41.667 0.00 0.00 0.00 4.37
2096 11168 4.704540 TGCACCATGTCTAAGTATTTTGGG 59.295 41.667 0.00 0.00 0.00 4.12
2097 11169 5.895636 TGCACCATGTCTAAGTATTTTGG 57.104 39.130 0.00 0.00 0.00 3.28
2098 11170 7.485913 GTCAATGCACCATGTCTAAGTATTTTG 59.514 37.037 0.00 0.00 0.00 2.44
2099 11171 7.394359 AGTCAATGCACCATGTCTAAGTATTTT 59.606 33.333 0.00 0.00 0.00 1.82
2100 11172 6.886459 AGTCAATGCACCATGTCTAAGTATTT 59.114 34.615 0.00 0.00 0.00 1.40
2101 11173 6.418101 AGTCAATGCACCATGTCTAAGTATT 58.582 36.000 0.00 0.00 0.00 1.89
2102 11174 5.994250 AGTCAATGCACCATGTCTAAGTAT 58.006 37.500 0.00 0.00 0.00 2.12
2103 11175 5.420725 AGTCAATGCACCATGTCTAAGTA 57.579 39.130 0.00 0.00 0.00 2.24
2104 11176 4.292186 AGTCAATGCACCATGTCTAAGT 57.708 40.909 0.00 0.00 0.00 2.24
2105 11177 4.940046 AGAAGTCAATGCACCATGTCTAAG 59.060 41.667 0.00 0.00 0.00 2.18
2106 11178 4.910195 AGAAGTCAATGCACCATGTCTAA 58.090 39.130 0.00 0.00 0.00 2.10
2107 11179 4.558226 AGAAGTCAATGCACCATGTCTA 57.442 40.909 0.00 0.00 0.00 2.59
2108 11180 3.430042 AGAAGTCAATGCACCATGTCT 57.570 42.857 0.00 0.00 0.00 3.41
2109 11181 4.002982 TGTAGAAGTCAATGCACCATGTC 58.997 43.478 0.00 0.00 0.00 3.06
2110 11182 4.019792 TGTAGAAGTCAATGCACCATGT 57.980 40.909 0.00 0.00 0.00 3.21
2111 11183 5.106038 ACAATGTAGAAGTCAATGCACCATG 60.106 40.000 0.00 0.00 0.00 3.66
2112 11184 5.012239 ACAATGTAGAAGTCAATGCACCAT 58.988 37.500 0.00 0.00 0.00 3.55
2113 11185 4.397420 ACAATGTAGAAGTCAATGCACCA 58.603 39.130 0.00 0.00 0.00 4.17
2114 11186 5.376854 AACAATGTAGAAGTCAATGCACC 57.623 39.130 0.00 0.00 0.00 5.01
2115 11187 7.698836 AAAAACAATGTAGAAGTCAATGCAC 57.301 32.000 0.00 0.00 0.00 4.57
2136 11208 6.459066 TGGTTGATGTGTCAAGAAACAAAAA 58.541 32.000 0.00 0.00 44.58 1.94
2137 11209 6.030548 TGGTTGATGTGTCAAGAAACAAAA 57.969 33.333 0.00 0.00 44.58 2.44
2138 11210 5.651387 TGGTTGATGTGTCAAGAAACAAA 57.349 34.783 0.00 0.00 44.58 2.83
2139 11211 5.651387 TTGGTTGATGTGTCAAGAAACAA 57.349 34.783 0.00 0.00 44.58 2.83
2140 11212 5.850557 ATTGGTTGATGTGTCAAGAAACA 57.149 34.783 0.00 0.00 44.58 2.83
2141 11213 7.648142 TCTTATTGGTTGATGTGTCAAGAAAC 58.352 34.615 0.00 0.00 44.58 2.78
2142 11214 7.719193 TCTCTTATTGGTTGATGTGTCAAGAAA 59.281 33.333 0.00 0.00 44.58 2.52
2143 11215 7.223584 TCTCTTATTGGTTGATGTGTCAAGAA 58.776 34.615 0.00 0.00 44.58 2.52
2144 11216 6.768483 TCTCTTATTGGTTGATGTGTCAAGA 58.232 36.000 0.00 0.00 44.58 3.02
2145 11217 7.335171 TCATCTCTTATTGGTTGATGTGTCAAG 59.665 37.037 0.00 0.00 44.58 3.02
2146 11218 7.167535 TCATCTCTTATTGGTTGATGTGTCAA 58.832 34.615 0.00 0.00 41.89 3.18
2147 11219 6.710278 TCATCTCTTATTGGTTGATGTGTCA 58.290 36.000 0.00 0.00 36.74 3.58
2148 11220 6.259608 CCTCATCTCTTATTGGTTGATGTGTC 59.740 42.308 0.00 0.00 36.74 3.67
2149 11221 6.118170 CCTCATCTCTTATTGGTTGATGTGT 58.882 40.000 0.00 0.00 36.74 3.72
2150 11222 5.530171 CCCTCATCTCTTATTGGTTGATGTG 59.470 44.000 0.00 0.00 36.74 3.21
2151 11223 5.398353 CCCCTCATCTCTTATTGGTTGATGT 60.398 44.000 0.00 0.00 36.74 3.06
2152 11224 5.068636 CCCCTCATCTCTTATTGGTTGATG 58.931 45.833 0.00 0.00 36.73 3.07
2153 11225 4.728860 ACCCCTCATCTCTTATTGGTTGAT 59.271 41.667 0.00 0.00 0.00 2.57
2154 11226 4.080356 CACCCCTCATCTCTTATTGGTTGA 60.080 45.833 0.00 0.00 0.00 3.18
2155 11227 4.202441 CACCCCTCATCTCTTATTGGTTG 58.798 47.826 0.00 0.00 0.00 3.77
2156 11228 3.852578 ACACCCCTCATCTCTTATTGGTT 59.147 43.478 0.00 0.00 0.00 3.67
2157 11229 3.200825 CACACCCCTCATCTCTTATTGGT 59.799 47.826 0.00 0.00 0.00 3.67
2158 11230 3.200825 ACACACCCCTCATCTCTTATTGG 59.799 47.826 0.00 0.00 0.00 3.16
2159 11231 4.494091 ACACACCCCTCATCTCTTATTG 57.506 45.455 0.00 0.00 0.00 1.90
2160 11232 5.455326 GCATACACACCCCTCATCTCTTATT 60.455 44.000 0.00 0.00 0.00 1.40
2161 11233 4.040952 GCATACACACCCCTCATCTCTTAT 59.959 45.833 0.00 0.00 0.00 1.73
2162 11234 3.388024 GCATACACACCCCTCATCTCTTA 59.612 47.826 0.00 0.00 0.00 2.10
2163 11235 2.171448 GCATACACACCCCTCATCTCTT 59.829 50.000 0.00 0.00 0.00 2.85
2164 11236 1.765314 GCATACACACCCCTCATCTCT 59.235 52.381 0.00 0.00 0.00 3.10
2165 11237 1.765314 AGCATACACACCCCTCATCTC 59.235 52.381 0.00 0.00 0.00 2.75
2166 11238 1.885049 AGCATACACACCCCTCATCT 58.115 50.000 0.00 0.00 0.00 2.90
2167 11239 2.717639 AAGCATACACACCCCTCATC 57.282 50.000 0.00 0.00 0.00 2.92
2168 11240 3.456380 AAAAGCATACACACCCCTCAT 57.544 42.857 0.00 0.00 0.00 2.90
2169 11241 2.969821 AAAAGCATACACACCCCTCA 57.030 45.000 0.00 0.00 0.00 3.86
2170 11242 4.097892 CCATTAAAAGCATACACACCCCTC 59.902 45.833 0.00 0.00 0.00 4.30
2171 11243 4.023291 CCATTAAAAGCATACACACCCCT 58.977 43.478 0.00 0.00 0.00 4.79
2172 11244 3.430236 GCCATTAAAAGCATACACACCCC 60.430 47.826 0.00 0.00 0.00 4.95
2173 11245 3.447229 AGCCATTAAAAGCATACACACCC 59.553 43.478 3.26 0.00 0.00 4.61
2174 11246 4.718940 AGCCATTAAAAGCATACACACC 57.281 40.909 3.26 0.00 0.00 4.16
2175 11247 5.708948 TCAAGCCATTAAAAGCATACACAC 58.291 37.500 3.26 0.00 0.00 3.82
2176 11248 5.709631 TCTCAAGCCATTAAAAGCATACACA 59.290 36.000 3.26 0.00 0.00 3.72
2177 11249 6.194796 TCTCAAGCCATTAAAAGCATACAC 57.805 37.500 3.26 0.00 0.00 2.90
2178 11250 7.408756 AATCTCAAGCCATTAAAAGCATACA 57.591 32.000 3.26 0.00 0.00 2.29
2179 11251 7.862873 GGTAATCTCAAGCCATTAAAAGCATAC 59.137 37.037 3.26 0.00 0.00 2.39
2180 11252 7.559533 TGGTAATCTCAAGCCATTAAAAGCATA 59.440 33.333 3.26 0.00 0.00 3.14
2181 11253 6.380846 TGGTAATCTCAAGCCATTAAAAGCAT 59.619 34.615 3.26 0.00 0.00 3.79
2182 11254 5.714333 TGGTAATCTCAAGCCATTAAAAGCA 59.286 36.000 3.26 0.00 0.00 3.91
2183 11255 6.207691 TGGTAATCTCAAGCCATTAAAAGC 57.792 37.500 0.00 0.00 0.00 3.51
2184 11256 8.087750 TGTTTGGTAATCTCAAGCCATTAAAAG 58.912 33.333 0.00 0.00 0.00 2.27
2185 11257 7.870445 GTGTTTGGTAATCTCAAGCCATTAAAA 59.130 33.333 0.00 0.00 0.00 1.52
2186 11258 7.375053 GTGTTTGGTAATCTCAAGCCATTAAA 58.625 34.615 0.00 0.00 0.00 1.52
2187 11259 6.348950 CGTGTTTGGTAATCTCAAGCCATTAA 60.349 38.462 0.00 0.00 0.00 1.40
2188 11260 5.123186 CGTGTTTGGTAATCTCAAGCCATTA 59.877 40.000 0.00 0.00 0.00 1.90
2189 11261 4.082787 CGTGTTTGGTAATCTCAAGCCATT 60.083 41.667 0.00 0.00 0.00 3.16
2190 11262 3.440173 CGTGTTTGGTAATCTCAAGCCAT 59.560 43.478 0.00 0.00 0.00 4.40
2191 11263 2.811431 CGTGTTTGGTAATCTCAAGCCA 59.189 45.455 0.00 0.00 0.00 4.75
2192 11264 3.071479 TCGTGTTTGGTAATCTCAAGCC 58.929 45.455 0.00 0.00 0.00 4.35
2193 11265 3.496884 TGTCGTGTTTGGTAATCTCAAGC 59.503 43.478 0.00 0.00 0.00 4.01
2194 11266 5.621422 CATGTCGTGTTTGGTAATCTCAAG 58.379 41.667 0.00 0.00 0.00 3.02
2195 11267 4.083537 GCATGTCGTGTTTGGTAATCTCAA 60.084 41.667 0.00 0.00 0.00 3.02
2196 11268 3.435327 GCATGTCGTGTTTGGTAATCTCA 59.565 43.478 0.00 0.00 0.00 3.27
2197 11269 3.435327 TGCATGTCGTGTTTGGTAATCTC 59.565 43.478 0.00 0.00 0.00 2.75
2198 11270 3.407698 TGCATGTCGTGTTTGGTAATCT 58.592 40.909 0.00 0.00 0.00 2.40
2199 11271 3.188460 ACTGCATGTCGTGTTTGGTAATC 59.812 43.478 0.00 0.00 0.00 1.75
2200 11272 3.058293 CACTGCATGTCGTGTTTGGTAAT 60.058 43.478 7.95 0.00 0.00 1.89
2201 11273 2.289274 CACTGCATGTCGTGTTTGGTAA 59.711 45.455 7.95 0.00 0.00 2.85
2202 11274 1.870402 CACTGCATGTCGTGTTTGGTA 59.130 47.619 7.95 0.00 0.00 3.25
2203 11275 0.662619 CACTGCATGTCGTGTTTGGT 59.337 50.000 7.95 0.00 0.00 3.67
2204 11276 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.000 13.12 0.00 0.00 3.28
2205 11277 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
2206 11278 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
2207 11279 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
2208 11280 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
2209 11281 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
2210 11282 2.224185 TGAACTAACCACTGCATGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
2211 11283 2.412870 TGAACTAACCACTGCATGTCG 58.587 47.619 0.00 0.00 0.00 4.35
2212 11284 4.726416 CAATGAACTAACCACTGCATGTC 58.274 43.478 0.00 0.00 0.00 3.06
2213 11285 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
2214 11286 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
2215 11287 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
2216 11288 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
2217 11289 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
2231 11303 8.890124 TGCTAATTAATAACATTGCATGCAAT 57.110 26.923 34.78 34.78 46.35 3.56
2232 11304 8.713737 TTGCTAATTAATAACATTGCATGCAA 57.286 26.923 33.57 33.57 40.47 4.08
2233 11305 8.713737 TTTGCTAATTAATAACATTGCATGCA 57.286 26.923 18.46 18.46 0.00 3.96
2259 11331 8.517056 GGGGAAAACGAGAGATTTTAATGTTTA 58.483 33.333 0.00 0.00 36.15 2.01
2260 11332 7.232737 AGGGGAAAACGAGAGATTTTAATGTTT 59.767 33.333 0.00 0.00 36.15 2.83
2261 11333 6.719829 AGGGGAAAACGAGAGATTTTAATGTT 59.280 34.615 0.00 0.00 36.15 2.71
2262 11334 6.246163 AGGGGAAAACGAGAGATTTTAATGT 58.754 36.000 0.00 0.00 36.15 2.71
2263 11335 6.183360 GGAGGGGAAAACGAGAGATTTTAATG 60.183 42.308 0.00 0.00 36.15 1.90
2264 11336 5.886474 GGAGGGGAAAACGAGAGATTTTAAT 59.114 40.000 0.00 0.00 36.15 1.40
2265 11337 5.013808 AGGAGGGGAAAACGAGAGATTTTAA 59.986 40.000 0.00 0.00 36.15 1.52
2266 11338 4.534897 AGGAGGGGAAAACGAGAGATTTTA 59.465 41.667 0.00 0.00 36.15 1.52
2267 11339 3.330998 AGGAGGGGAAAACGAGAGATTTT 59.669 43.478 0.00 0.00 36.15 1.82
2268 11340 2.913617 AGGAGGGGAAAACGAGAGATTT 59.086 45.455 0.00 0.00 38.89 2.17
2269 11341 2.502130 GAGGAGGGGAAAACGAGAGATT 59.498 50.000 0.00 0.00 0.00 2.40
2270 11342 2.112190 GAGGAGGGGAAAACGAGAGAT 58.888 52.381 0.00 0.00 0.00 2.75
2271 11343 1.558233 GAGGAGGGGAAAACGAGAGA 58.442 55.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.