Multiple sequence alignment - TraesCS2A01G452800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G452800 chr2A 100.000 2528 0 0 1 2528 702195102 702192575 0.000000e+00 4669.0
1 TraesCS2A01G452800 chr2A 76.923 247 51 6 1033 1276 717878439 717878196 4.390000e-28 135.0
2 TraesCS2A01G452800 chr2A 95.833 48 2 0 4 51 79325839 79325792 7.500000e-11 78.7
3 TraesCS2A01G452800 chr2D 84.554 1379 141 37 614 1947 561935741 561934390 0.000000e+00 1301.0
4 TraesCS2A01G452800 chr2D 90.722 291 20 3 587 871 561935844 561935555 5.100000e-102 381.0
5 TraesCS2A01G452800 chr2D 82.067 329 40 9 2056 2375 561934338 561934020 1.930000e-66 263.0
6 TraesCS2A01G452800 chr2D 77.912 249 45 7 1033 1276 580003863 580003620 2.030000e-31 147.0
7 TraesCS2A01G452800 chr2D 94.872 78 4 0 2451 2528 561934018 561933941 3.420000e-24 122.0
8 TraesCS2A01G452800 chr2D 97.222 36 0 1 808 842 634867626 634867661 2.720000e-05 60.2
9 TraesCS2A01G452800 chr2B 88.319 1130 68 18 690 1767 671214029 671212912 0.000000e+00 1297.0
10 TraesCS2A01G452800 chr2B 92.624 583 36 6 1 580 671240413 671239835 0.000000e+00 832.0
11 TraesCS2A01G452800 chr2B 91.503 306 13 7 284 580 671214646 671214345 2.340000e-110 409.0
12 TraesCS2A01G452800 chr3A 79.384 747 115 19 984 1703 8903461 8902727 8.130000e-135 490.0
13 TraesCS2A01G452800 chr5B 83.803 142 19 2 2105 2243 572134853 572134713 5.670000e-27 132.0
14 TraesCS2A01G452800 chr4D 94.231 52 1 2 2 51 195015803 195015752 7.500000e-11 78.7
15 TraesCS2A01G452800 chr4A 94.000 50 3 0 2 51 412312359 412312310 2.700000e-10 76.8
16 TraesCS2A01G452800 chr4A 95.238 42 1 1 802 842 589505509 589505468 5.840000e-07 65.8
17 TraesCS2A01G452800 chr1D 94.000 50 3 0 2 51 44977209 44977160 2.700000e-10 76.8
18 TraesCS2A01G452800 chr1D 94.000 50 3 0 2 51 45095636 45095587 2.700000e-10 76.8
19 TraesCS2A01G452800 chr1D 94.000 50 3 0 2 51 45133222 45133173 2.700000e-10 76.8
20 TraesCS2A01G452800 chr6A 93.878 49 3 0 1 49 44092092 44092044 9.700000e-10 75.0
21 TraesCS2A01G452800 chr6A 93.878 49 3 0 1 49 44183389 44183341 9.700000e-10 75.0
22 TraesCS2A01G452800 chr7A 100.000 28 0 0 599 626 19784129 19784156 5.000000e-03 52.8
23 TraesCS2A01G452800 chr6B 87.234 47 5 1 599 644 164040175 164040221 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G452800 chr2A 702192575 702195102 2527 True 4669.00 4669 100.00000 1 2528 1 chr2A.!!$R2 2527
1 TraesCS2A01G452800 chr2D 561933941 561935844 1903 True 516.75 1301 88.05375 587 2528 4 chr2D.!!$R2 1941
2 TraesCS2A01G452800 chr2B 671212912 671214646 1734 True 853.00 1297 89.91100 284 1767 2 chr2B.!!$R2 1483
3 TraesCS2A01G452800 chr2B 671239835 671240413 578 True 832.00 832 92.62400 1 580 1 chr2B.!!$R1 579
4 TraesCS2A01G452800 chr3A 8902727 8903461 734 True 490.00 490 79.38400 984 1703 1 chr3A.!!$R1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 179 0.107268 TCATGATGATCGTGGCCCAG 59.893 55.0 14.18 0.0 34.27 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2555 0.251916 CGGCAAGGTGGGAGTGAATA 59.748 55.0 0.0 0.0 0.0 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 1.002274 AAAACTTGGTGGTGGGGCA 59.998 52.632 0.00 0.00 0.00 5.36
65 67 4.932105 GGTGGTGGGGCAAGGCAA 62.932 66.667 0.00 0.00 0.00 4.52
91 93 3.075005 GAGGTAGGGCTGGCGACA 61.075 66.667 0.00 0.00 39.59 4.35
105 107 1.674057 CGACAGGAAGTCTTGGGCT 59.326 57.895 0.00 0.00 45.32 5.19
127 129 5.097742 TGTTGAGGGTGGATGTTAGTATG 57.902 43.478 0.00 0.00 0.00 2.39
138 140 3.088941 TTAGTATGGCGCCGCAGCT 62.089 57.895 23.90 18.61 36.60 4.24
168 170 3.624900 CGGCAACAACATCATGATGATC 58.375 45.455 36.37 16.13 41.20 2.92
177 179 0.107268 TCATGATGATCGTGGCCCAG 59.893 55.000 14.18 0.00 34.27 4.45
205 207 1.519455 GGCTCTTCATGTCGTCGGG 60.519 63.158 0.00 0.00 0.00 5.14
209 211 0.526211 TCTTCATGTCGTCGGGACTG 59.474 55.000 8.60 5.38 46.24 3.51
278 280 0.620556 ACATGGCAACCCTGACTAGG 59.379 55.000 0.00 0.00 44.18 3.02
282 284 1.218316 GCAACCCTGACTAGGTCGG 59.782 63.158 0.00 0.00 42.96 4.79
320 322 3.181500 GCGGGAATTGTAGCGAAAAGATT 60.181 43.478 0.00 0.00 0.00 2.40
353 355 9.717942 TTTGGAAAGTCAAATTTTCTCTTCAAA 57.282 25.926 0.00 0.00 35.42 2.69
354 356 9.717942 TTGGAAAGTCAAATTTTCTCTTCAAAA 57.282 25.926 0.00 0.00 35.42 2.44
543 554 9.927668 AAAATTCAAACCAATATTCGAGAACAT 57.072 25.926 0.00 0.00 0.00 2.71
546 557 7.680442 TCAAACCAATATTCGAGAACATGAA 57.320 32.000 0.00 0.00 0.00 2.57
547 558 7.526608 TCAAACCAATATTCGAGAACATGAAC 58.473 34.615 0.00 0.00 0.00 3.18
548 559 7.174080 TCAAACCAATATTCGAGAACATGAACA 59.826 33.333 0.00 0.00 0.00 3.18
549 560 7.630242 AACCAATATTCGAGAACATGAACAT 57.370 32.000 0.00 0.00 0.00 2.71
596 607 8.716646 TTCTGAAAAATTCTGAAAAGGGAAAC 57.283 30.769 9.17 0.00 42.28 2.78
714 1009 8.048514 TGATCCATGTTAATTCTGAGTGATTCA 58.951 33.333 0.00 0.00 0.00 2.57
739 1040 9.803315 CAGTACAACTCTATACTAAATGAGCAA 57.197 33.333 0.00 0.00 30.36 3.91
743 1044 8.936864 ACAACTCTATACTAAATGAGCAACAAC 58.063 33.333 0.00 0.00 0.00 3.32
818 1119 3.261981 ACTTTGGACTAAATCGGCGAT 57.738 42.857 18.14 18.14 0.00 4.58
856 1157 7.391620 TCGGGGGAGTAATTTATTAATAGCAG 58.608 38.462 0.00 0.00 0.00 4.24
968 1346 8.725606 TCATGGCTATATATATGCACCATCTA 57.274 34.615 16.94 9.84 34.26 1.98
971 1349 8.317776 TGGCTATATATATGCACCATCTACAA 57.682 34.615 5.44 0.00 0.00 2.41
973 1351 9.046296 GGCTATATATATGCACCATCTACAAAC 57.954 37.037 5.44 0.00 0.00 2.93
1038 1452 1.000771 TCCCTCCTGTCTCCTCGTG 60.001 63.158 0.00 0.00 0.00 4.35
1080 1494 1.028905 CCGAGGCTTCCACTCTAGAG 58.971 60.000 18.49 18.49 32.83 2.43
1217 1631 0.105039 GCCACTAAGATCACCCGAGG 59.895 60.000 0.00 0.00 0.00 4.63
1397 1811 2.087009 CGAAGACGAACCTCACGGC 61.087 63.158 0.00 0.00 42.66 5.68
1503 1917 4.845580 AAGGGCTGCTCCATCGCG 62.846 66.667 0.00 0.00 36.21 5.87
1515 1929 2.661866 ATCGCGCTCGCCATAACC 60.662 61.111 5.56 0.00 37.98 2.85
1531 1946 5.189928 CCATAACCACCATGTTGTAGCTAA 58.810 41.667 0.00 0.00 0.00 3.09
1533 1948 2.695359 ACCACCATGTTGTAGCTAACG 58.305 47.619 0.00 0.00 33.28 3.18
1551 1989 1.202582 ACGTGGTAACTGCTCTAGCTG 59.797 52.381 0.00 7.24 44.21 4.24
1606 2046 3.960102 ACTCTTGGAACCTGCAATTTCAA 59.040 39.130 8.75 6.60 0.00 2.69
1624 2064 7.846644 ATTTCAAATCAGTGAACTTTGCAAA 57.153 28.000 12.14 12.14 37.24 3.68
1649 2089 6.597262 ATGTTTGGACGGAAATTTTGTTTC 57.403 33.333 0.00 0.00 0.00 2.78
1781 2222 2.563942 GCATGGCGCACGGTTTTA 59.436 55.556 10.83 0.00 41.79 1.52
1782 2223 1.138671 GCATGGCGCACGGTTTTAT 59.861 52.632 10.83 0.00 41.79 1.40
1790 2231 2.844281 GCGCACGGTTTTATGTACGATG 60.844 50.000 0.30 0.00 0.00 3.84
1796 2237 2.286184 GGTTTTATGTACGATGGCGCTG 60.286 50.000 7.64 0.00 42.48 5.18
1815 2256 2.621998 CTGATGGAGGAAATGGATGTGC 59.378 50.000 0.00 0.00 0.00 4.57
1819 2260 0.033208 GAGGAAATGGATGTGCCCCA 60.033 55.000 0.00 0.00 38.19 4.96
1835 2276 4.892934 GTGCCCCATTAATGTTCATCCTTA 59.107 41.667 14.25 0.00 0.00 2.69
1860 2301 3.047115 AGGAGATCTGATGCCACAAGAT 58.953 45.455 0.00 0.00 0.00 2.40
1864 2305 5.411977 GGAGATCTGATGCCACAAGATTATG 59.588 44.000 0.00 0.00 0.00 1.90
1867 2308 7.687388 AGATCTGATGCCACAAGATTATGTAT 58.313 34.615 0.00 0.00 30.84 2.29
1876 2317 6.992715 GCCACAAGATTATGTATAACCAGACT 59.007 38.462 0.00 0.00 30.84 3.24
1880 2321 7.347222 ACAAGATTATGTATAACCAGACTCCCA 59.653 37.037 0.00 0.00 0.00 4.37
1886 2327 5.391256 TGTATAACCAGACTCCCATATCGT 58.609 41.667 0.00 0.00 0.00 3.73
1887 2328 5.836898 TGTATAACCAGACTCCCATATCGTT 59.163 40.000 0.00 0.00 0.00 3.85
1890 2331 2.320781 CCAGACTCCCATATCGTTCCT 58.679 52.381 0.00 0.00 0.00 3.36
1917 2358 3.628646 GAGCAGGTTGCCCGGTCAT 62.629 63.158 0.00 0.00 46.52 3.06
1919 2360 2.993471 GCAGGTTGCCCGGTCATTG 61.993 63.158 0.00 0.00 37.42 2.82
1955 2396 8.986477 AAAAATAGTATCAAACCAGCATTGAC 57.014 30.769 0.00 0.00 39.43 3.18
1957 2398 3.009723 AGTATCAAACCAGCATTGACCG 58.990 45.455 0.00 0.00 39.43 4.79
1958 2399 1.176527 ATCAAACCAGCATTGACCGG 58.823 50.000 0.00 0.00 39.43 5.28
1959 2400 0.109532 TCAAACCAGCATTGACCGGA 59.890 50.000 9.46 0.00 32.10 5.14
1960 2401 0.240945 CAAACCAGCATTGACCGGAC 59.759 55.000 9.46 1.07 0.00 4.79
1961 2402 1.234615 AAACCAGCATTGACCGGACG 61.235 55.000 9.46 0.00 0.00 4.79
1962 2403 2.107041 AACCAGCATTGACCGGACGA 62.107 55.000 9.46 0.77 0.00 4.20
1963 2404 1.375396 CCAGCATTGACCGGACGAA 60.375 57.895 9.46 0.00 0.00 3.85
1964 2405 0.953471 CCAGCATTGACCGGACGAAA 60.953 55.000 9.46 0.00 0.00 3.46
1965 2406 0.871722 CAGCATTGACCGGACGAAAA 59.128 50.000 9.46 0.00 0.00 2.29
1966 2407 1.265635 CAGCATTGACCGGACGAAAAA 59.734 47.619 9.46 0.00 0.00 1.94
2021 2462 2.747022 GGGCCCGCACCAATTTTT 59.253 55.556 5.69 0.00 0.00 1.94
2070 2511 2.442643 GGTATGGGGACGTCCGGA 60.443 66.667 27.68 16.99 36.71 5.14
2071 2512 1.835712 GGTATGGGGACGTCCGGAT 60.836 63.158 27.68 22.27 36.71 4.18
2100 2545 0.321122 CAGAATGATCGCTAGGGCCC 60.321 60.000 16.46 16.46 39.69 5.80
2101 2546 1.374758 GAATGATCGCTAGGGCCCG 60.375 63.158 18.44 3.70 34.44 6.13
2102 2547 3.537206 AATGATCGCTAGGGCCCGC 62.537 63.158 18.44 14.51 34.44 6.13
2116 2561 4.012895 CCGCGCGCCCATATTCAC 62.013 66.667 27.36 0.00 0.00 3.18
2120 2565 1.961277 CGCGCCCATATTCACTCCC 60.961 63.158 0.00 0.00 0.00 4.30
2121 2566 1.148273 GCGCCCATATTCACTCCCA 59.852 57.895 0.00 0.00 0.00 4.37
2129 2578 0.251916 TATTCACTCCCACCTTGCCG 59.748 55.000 0.00 0.00 0.00 5.69
2164 2613 4.369182 TCTCTTCTTTGTTTGTCCTCGTC 58.631 43.478 0.00 0.00 0.00 4.20
2165 2614 3.463944 TCTTCTTTGTTTGTCCTCGTCC 58.536 45.455 0.00 0.00 0.00 4.79
2166 2615 2.992124 TCTTTGTTTGTCCTCGTCCA 57.008 45.000 0.00 0.00 0.00 4.02
2172 2621 2.000447 GTTTGTCCTCGTCCATACAGC 59.000 52.381 0.00 0.00 0.00 4.40
2175 2624 1.379443 TCCTCGTCCATACAGCCGT 60.379 57.895 0.00 0.00 0.00 5.68
2178 2627 1.340248 CCTCGTCCATACAGCCGTAAT 59.660 52.381 0.00 0.00 0.00 1.89
2195 2644 1.056660 AATCGGTCAAGGTCACCACT 58.943 50.000 0.00 0.00 32.89 4.00
2197 2646 0.963962 TCGGTCAAGGTCACCACTAC 59.036 55.000 0.00 0.00 32.89 2.73
2268 2717 3.047857 TGGAATGATGGCTATGAGTGGA 58.952 45.455 0.00 0.00 0.00 4.02
2308 2757 4.499037 AACTTTCTAAATGTGAACGGCC 57.501 40.909 0.00 0.00 0.00 6.13
2314 2763 2.723124 AAATGTGAACGGCCATCAAC 57.277 45.000 9.66 5.72 0.00 3.18
2316 2765 1.922135 ATGTGAACGGCCATCAACGC 61.922 55.000 9.66 0.00 0.00 4.84
2318 2767 2.032634 TGAACGGCCATCAACGCTC 61.033 57.895 2.24 0.00 0.00 5.03
2319 2768 2.031919 AACGGCCATCAACGCTCA 59.968 55.556 2.24 0.00 0.00 4.26
2322 2771 2.034879 CGGCCATCAACGCTCACTT 61.035 57.895 2.24 0.00 0.00 3.16
2323 2772 1.577328 CGGCCATCAACGCTCACTTT 61.577 55.000 2.24 0.00 0.00 2.66
2324 2773 0.598065 GGCCATCAACGCTCACTTTT 59.402 50.000 0.00 0.00 0.00 2.27
2325 2774 1.666888 GGCCATCAACGCTCACTTTTG 60.667 52.381 0.00 0.00 0.00 2.44
2326 2775 1.001378 GCCATCAACGCTCACTTTTGT 60.001 47.619 0.00 0.00 0.00 2.83
2349 2798 7.722363 TGTGAAGTTGTGAAGAGTATGAACTA 58.278 34.615 0.00 0.00 35.56 2.24
2370 2819 0.179081 GACTCGGCTGTTCATACCCC 60.179 60.000 0.00 0.00 0.00 4.95
2375 2824 0.618458 GGCTGTTCATACCCCTCACA 59.382 55.000 0.00 0.00 0.00 3.58
2376 2825 1.004277 GGCTGTTCATACCCCTCACAA 59.996 52.381 0.00 0.00 0.00 3.33
2377 2826 2.554344 GGCTGTTCATACCCCTCACAAA 60.554 50.000 0.00 0.00 0.00 2.83
2378 2827 2.749621 GCTGTTCATACCCCTCACAAAG 59.250 50.000 0.00 0.00 0.00 2.77
2379 2828 3.347216 CTGTTCATACCCCTCACAAAGG 58.653 50.000 0.00 0.00 45.77 3.11
2386 2835 4.872293 CCTCACAAAGGGGGCATT 57.128 55.556 0.00 0.00 42.03 3.56
2387 2836 2.279842 CCTCACAAAGGGGGCATTG 58.720 57.895 0.00 0.00 42.03 2.82
2388 2837 0.251742 CCTCACAAAGGGGGCATTGA 60.252 55.000 0.00 0.00 42.03 2.57
2389 2838 1.620524 CCTCACAAAGGGGGCATTGAT 60.621 52.381 0.00 0.00 42.03 2.57
2390 2839 1.479323 CTCACAAAGGGGGCATTGATG 59.521 52.381 0.00 0.00 0.00 3.07
2391 2840 0.538118 CACAAAGGGGGCATTGATGG 59.462 55.000 0.00 0.00 0.00 3.51
2392 2841 0.116940 ACAAAGGGGGCATTGATGGT 59.883 50.000 0.00 0.00 0.00 3.55
2393 2842 0.826062 CAAAGGGGGCATTGATGGTC 59.174 55.000 0.00 0.00 0.00 4.02
2394 2843 0.413037 AAAGGGGGCATTGATGGTCA 59.587 50.000 0.00 0.00 0.00 4.02
2395 2844 0.638292 AAGGGGGCATTGATGGTCAT 59.362 50.000 0.00 0.00 0.00 3.06
2396 2845 1.533187 AGGGGGCATTGATGGTCATA 58.467 50.000 0.00 0.00 0.00 2.15
2397 2846 1.145738 AGGGGGCATTGATGGTCATAC 59.854 52.381 0.00 0.00 0.00 2.39
2398 2847 1.145738 GGGGGCATTGATGGTCATACT 59.854 52.381 0.00 0.00 0.00 2.12
2399 2848 2.233271 GGGGCATTGATGGTCATACTG 58.767 52.381 0.00 0.00 0.00 2.74
2400 2849 2.158623 GGGGCATTGATGGTCATACTGA 60.159 50.000 0.00 0.00 0.00 3.41
2401 2850 3.144506 GGGCATTGATGGTCATACTGAG 58.855 50.000 0.00 0.00 0.00 3.35
2402 2851 3.181451 GGGCATTGATGGTCATACTGAGA 60.181 47.826 0.00 0.00 0.00 3.27
2403 2852 4.063689 GGCATTGATGGTCATACTGAGAG 58.936 47.826 0.00 0.00 0.00 3.20
2404 2853 4.202295 GGCATTGATGGTCATACTGAGAGA 60.202 45.833 0.00 0.00 0.00 3.10
2405 2854 4.989797 GCATTGATGGTCATACTGAGAGAG 59.010 45.833 0.00 0.00 0.00 3.20
2406 2855 5.221402 GCATTGATGGTCATACTGAGAGAGA 60.221 44.000 0.00 0.00 0.00 3.10
2407 2856 6.684865 GCATTGATGGTCATACTGAGAGAGAA 60.685 42.308 0.00 0.00 0.00 2.87
2408 2857 6.462552 TTGATGGTCATACTGAGAGAGAAG 57.537 41.667 0.00 0.00 0.00 2.85
2409 2858 5.760131 TGATGGTCATACTGAGAGAGAAGA 58.240 41.667 0.00 0.00 0.00 2.87
2410 2859 6.372104 TGATGGTCATACTGAGAGAGAAGAT 58.628 40.000 0.00 0.00 0.00 2.40
2411 2860 6.838090 TGATGGTCATACTGAGAGAGAAGATT 59.162 38.462 0.00 0.00 0.00 2.40
2412 2861 8.001292 TGATGGTCATACTGAGAGAGAAGATTA 58.999 37.037 0.00 0.00 0.00 1.75
2413 2862 7.575414 TGGTCATACTGAGAGAGAAGATTAC 57.425 40.000 0.00 0.00 0.00 1.89
2414 2863 7.350382 TGGTCATACTGAGAGAGAAGATTACT 58.650 38.462 0.00 0.00 0.00 2.24
2415 2864 7.284261 TGGTCATACTGAGAGAGAAGATTACTG 59.716 40.741 0.00 0.00 0.00 2.74
2416 2865 7.138736 GTCATACTGAGAGAGAAGATTACTGC 58.861 42.308 0.00 0.00 0.00 4.40
2417 2866 7.013274 GTCATACTGAGAGAGAAGATTACTGCT 59.987 40.741 0.00 0.00 34.14 4.24
2418 2867 7.559533 TCATACTGAGAGAGAAGATTACTGCTT 59.440 37.037 0.00 0.00 31.04 3.91
2419 2868 6.603940 ACTGAGAGAGAAGATTACTGCTTT 57.396 37.500 0.00 0.00 31.04 3.51
2420 2869 7.003402 ACTGAGAGAGAAGATTACTGCTTTT 57.997 36.000 0.00 0.00 31.04 2.27
2421 2870 6.873076 ACTGAGAGAGAAGATTACTGCTTTTG 59.127 38.462 0.00 0.00 31.04 2.44
2441 2890 1.396301 GCATGATGCGGCTATCTAAGC 59.604 52.381 0.00 5.37 41.65 3.09
2448 2897 2.738904 GCTATCTAAGCCGGCCGC 60.739 66.667 26.15 16.01 46.25 6.53
2449 2898 2.734591 CTATCTAAGCCGGCCGCA 59.265 61.111 26.15 7.53 41.38 5.69
2508 2957 0.170339 CCGCCGGACCTGAAATTTTC 59.830 55.000 5.05 2.05 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 93 1.072965 CTCAACAGCCCAAGACTTCCT 59.927 52.381 0.00 0.00 0.00 3.36
92 94 1.528129 CTCAACAGCCCAAGACTTCC 58.472 55.000 0.00 0.00 0.00 3.46
105 107 4.080582 CCATACTAACATCCACCCTCAACA 60.081 45.833 0.00 0.00 0.00 3.33
145 147 1.133598 CATCATGATGTTGTTGCCGCT 59.866 47.619 24.87 0.00 34.23 5.52
147 149 3.624900 GATCATCATGATGTTGTTGCCG 58.375 45.455 30.01 6.57 37.20 5.69
177 179 2.436824 GAAGAGCCCAACCTCCGC 60.437 66.667 0.00 0.00 32.17 5.54
271 273 1.622607 CCATTGGGCCGACCTAGTCA 61.623 60.000 0.00 0.00 41.11 3.41
392 394 8.879227 TGTTCTCCTTTTCCATAAAATCCAAAT 58.121 29.630 0.00 0.00 34.18 2.32
581 592 9.020731 GGAGTAATTATGTTTCCCTTTTCAGAA 57.979 33.333 0.00 0.00 0.00 3.02
582 593 7.614192 GGGAGTAATTATGTTTCCCTTTTCAGA 59.386 37.037 14.97 0.00 43.39 3.27
583 594 7.772166 GGGAGTAATTATGTTTCCCTTTTCAG 58.228 38.462 14.97 0.00 43.39 3.02
584 595 7.712204 GGGAGTAATTATGTTTCCCTTTTCA 57.288 36.000 14.97 0.00 43.39 2.69
590 601 5.382664 TGGAGGGAGTAATTATGTTTCCC 57.617 43.478 14.65 14.65 46.41 3.97
591 602 6.490381 GGATTGGAGGGAGTAATTATGTTTCC 59.510 42.308 0.00 0.00 0.00 3.13
594 605 6.590656 TGGATTGGAGGGAGTAATTATGTT 57.409 37.500 0.00 0.00 0.00 2.71
714 1009 9.804758 GTTGCTCATTTAGTATAGAGTTGTACT 57.195 33.333 0.00 0.00 35.66 2.73
718 1013 9.155975 AGTTGTTGCTCATTTAGTATAGAGTTG 57.844 33.333 0.00 0.00 0.00 3.16
725 1020 8.677300 CCATGTTAGTTGTTGCTCATTTAGTAT 58.323 33.333 0.00 0.00 0.00 2.12
739 1040 4.023980 TCTCTCCGATCCATGTTAGTTGT 58.976 43.478 0.00 0.00 0.00 3.32
743 1044 6.015856 ACATTACTCTCTCCGATCCATGTTAG 60.016 42.308 0.00 0.00 0.00 2.34
818 1119 8.632731 ATTACTCCCCCGATCCATATTAATTA 57.367 34.615 0.00 0.00 0.00 1.40
867 1168 9.165035 CCAATGAAAAAGGTATGTATTGCAAAT 57.835 29.630 1.71 0.00 0.00 2.32
926 1301 7.054491 AGCCATGATTGATACAAAAATACCC 57.946 36.000 0.00 0.00 0.00 3.69
971 1349 4.247258 TGGCACGACTATAACAAATCGTT 58.753 39.130 0.00 0.00 44.98 3.85
973 1351 4.850859 TTGGCACGACTATAACAAATCG 57.149 40.909 0.00 0.00 40.39 3.34
1038 1452 1.027792 AGACGAGGACGAAGAGGAGC 61.028 60.000 0.00 0.00 42.66 4.70
1080 1494 1.626654 CGACGGACTTGCATGTGTCC 61.627 60.000 18.47 18.47 46.69 4.02
1305 1719 3.564027 GCCGCCGTGTAGTGCATC 61.564 66.667 0.00 0.00 0.00 3.91
1413 1827 1.376037 CCTTTCCTCGCAGGTGTCC 60.376 63.158 2.68 0.00 36.53 4.02
1476 1890 1.130054 AGCAGCCCTTGGAGAACTCA 61.130 55.000 4.23 0.00 0.00 3.41
1503 1917 0.748005 ACATGGTGGTTATGGCGAGC 60.748 55.000 0.00 0.00 0.00 5.03
1515 1929 2.415168 CCACGTTAGCTACAACATGGTG 59.585 50.000 9.83 9.83 37.07 4.17
1531 1946 1.202582 CAGCTAGAGCAGTTACCACGT 59.797 52.381 4.01 0.00 45.16 4.49
1533 1948 1.646189 GCAGCTAGAGCAGTTACCAC 58.354 55.000 4.01 0.00 45.16 4.16
1551 1989 2.564771 TCCAAATGATCATGGACTCGC 58.435 47.619 13.08 0.00 40.74 5.03
1578 2018 6.670695 ATTGCAGGTTCCAAGAGTTTATTT 57.329 33.333 0.00 0.00 0.00 1.40
1606 2046 8.767085 CAAACATATTTGCAAAGTTCACTGATT 58.233 29.630 18.19 6.57 38.92 2.57
1624 2064 7.386573 GGAAACAAAATTTCCGTCCAAACATAT 59.613 33.333 2.80 0.00 38.62 1.78
1659 2099 9.874205 CTCCAGAAAAATAATAATTCAAGGCAA 57.126 29.630 0.00 0.00 0.00 4.52
1660 2100 7.981225 GCTCCAGAAAAATAATAATTCAAGGCA 59.019 33.333 0.00 0.00 0.00 4.75
1661 2101 8.200120 AGCTCCAGAAAAATAATAATTCAAGGC 58.800 33.333 0.00 0.00 0.00 4.35
1719 2159 7.870445 GGAGTATTTCTATTCTGTAAGCTCCAG 59.130 40.741 6.96 6.96 37.95 3.86
1721 2161 7.727181 TGGAGTATTTCTATTCTGTAAGCTCC 58.273 38.462 0.00 0.00 38.37 4.70
1722 2162 9.418045 GATGGAGTATTTCTATTCTGTAAGCTC 57.582 37.037 0.00 0.00 0.00 4.09
1729 2170 7.730084 TGGACAGATGGAGTATTTCTATTCTG 58.270 38.462 0.00 0.00 32.95 3.02
1775 2216 1.937899 AGCGCCATCGTACATAAAACC 59.062 47.619 2.29 0.00 38.14 3.27
1778 2219 2.588027 TCAGCGCCATCGTACATAAA 57.412 45.000 2.29 0.00 38.14 1.40
1780 2221 1.336795 CCATCAGCGCCATCGTACATA 60.337 52.381 2.29 0.00 38.14 2.29
1781 2222 0.601046 CCATCAGCGCCATCGTACAT 60.601 55.000 2.29 0.00 38.14 2.29
1782 2223 1.227234 CCATCAGCGCCATCGTACA 60.227 57.895 2.29 0.00 38.14 2.90
1790 2231 1.450531 CCATTTCCTCCATCAGCGCC 61.451 60.000 2.29 0.00 0.00 6.53
1796 2237 1.959282 GGCACATCCATTTCCTCCATC 59.041 52.381 0.00 0.00 34.01 3.51
1835 2276 5.131642 TCTTGTGGCATCAGATCTCCTAAAT 59.868 40.000 0.00 0.00 0.00 1.40
1855 2296 7.735917 TGGGAGTCTGGTTATACATAATCTTG 58.264 38.462 0.00 0.00 0.00 3.02
1860 2301 7.672660 ACGATATGGGAGTCTGGTTATACATAA 59.327 37.037 0.00 0.00 0.00 1.90
1864 2305 5.979288 ACGATATGGGAGTCTGGTTATAC 57.021 43.478 0.00 0.00 0.00 1.47
1867 2308 3.640029 GGAACGATATGGGAGTCTGGTTA 59.360 47.826 0.00 0.00 0.00 2.85
1876 2317 4.560716 CGAGCATTTAGGAACGATATGGGA 60.561 45.833 0.00 0.00 0.00 4.37
1880 2321 4.238514 GCTCGAGCATTTAGGAACGATAT 58.761 43.478 31.91 0.00 41.59 1.63
1942 2383 1.234615 CGTCCGGTCAATGCTGGTTT 61.235 55.000 0.00 0.00 36.33 3.27
1947 2388 1.600023 TTTTTCGTCCGGTCAATGCT 58.400 45.000 0.00 0.00 0.00 3.79
1964 2405 8.364894 GTGGAAACCTGGTTTGATACTATTTTT 58.635 33.333 28.31 0.08 35.77 1.94
1965 2406 7.039293 GGTGGAAACCTGGTTTGATACTATTTT 60.039 37.037 28.31 0.30 35.77 1.82
1966 2407 6.436218 GGTGGAAACCTGGTTTGATACTATTT 59.564 38.462 28.31 0.86 35.77 1.40
1967 2408 5.949952 GGTGGAAACCTGGTTTGATACTATT 59.050 40.000 28.31 1.66 35.77 1.73
1968 2409 5.014755 TGGTGGAAACCTGGTTTGATACTAT 59.985 40.000 28.31 2.45 35.77 2.12
1969 2410 4.351407 TGGTGGAAACCTGGTTTGATACTA 59.649 41.667 28.31 17.61 35.77 1.82
1970 2411 3.139397 TGGTGGAAACCTGGTTTGATACT 59.861 43.478 28.31 4.06 35.77 2.12
1971 2412 3.492337 TGGTGGAAACCTGGTTTGATAC 58.508 45.455 28.31 20.93 35.77 2.24
1972 2413 3.761897 CTGGTGGAAACCTGGTTTGATA 58.238 45.455 28.31 11.80 35.77 2.15
1973 2414 2.597455 CTGGTGGAAACCTGGTTTGAT 58.403 47.619 28.31 5.69 35.77 2.57
1974 2415 2.026905 GCTGGTGGAAACCTGGTTTGA 61.027 52.381 28.31 12.40 35.77 2.69
1975 2416 0.389025 GCTGGTGGAAACCTGGTTTG 59.611 55.000 28.31 14.05 35.77 2.93
1976 2417 0.759060 GGCTGGTGGAAACCTGGTTT 60.759 55.000 24.06 24.06 38.54 3.27
1977 2418 1.152546 GGCTGGTGGAAACCTGGTT 60.153 57.895 6.18 6.18 0.00 3.67
1978 2419 2.520968 GGCTGGTGGAAACCTGGT 59.479 61.111 0.00 0.00 0.00 4.00
1979 2420 2.283173 GGGCTGGTGGAAACCTGG 60.283 66.667 0.00 0.00 0.00 4.45
1980 2421 0.758685 TTTGGGCTGGTGGAAACCTG 60.759 55.000 0.00 0.00 0.00 4.00
1981 2422 0.759060 GTTTGGGCTGGTGGAAACCT 60.759 55.000 0.00 0.00 0.00 3.50
1982 2423 1.745890 GTTTGGGCTGGTGGAAACC 59.254 57.895 0.00 0.00 0.00 3.27
1983 2424 1.362355 CGTTTGGGCTGGTGGAAAC 59.638 57.895 0.00 0.00 0.00 2.78
1984 2425 2.494530 GCGTTTGGGCTGGTGGAAA 61.495 57.895 0.00 0.00 0.00 3.13
1985 2426 2.909965 GCGTTTGGGCTGGTGGAA 60.910 61.111 0.00 0.00 0.00 3.53
1986 2427 4.966787 GGCGTTTGGGCTGGTGGA 62.967 66.667 0.00 0.00 38.40 4.02
2004 2445 2.747022 AAAAATTGGTGCGGGCCC 59.253 55.556 13.57 13.57 0.00 5.80
2029 2470 1.234529 CCCCTCCACCACCCAAAAA 59.765 57.895 0.00 0.00 0.00 1.94
2030 2471 2.784654 CCCCCTCCACCACCCAAAA 61.785 63.158 0.00 0.00 0.00 2.44
2031 2472 3.189646 CCCCCTCCACCACCCAAA 61.190 66.667 0.00 0.00 0.00 3.28
2051 2492 3.543641 CGGACGTCCCCATACCCC 61.544 72.222 28.52 1.12 0.00 4.95
2053 2494 1.835712 ATCCGGACGTCCCCATACC 60.836 63.158 28.52 2.75 0.00 2.73
2054 2495 1.366366 CATCCGGACGTCCCCATAC 59.634 63.158 28.52 2.92 0.00 2.39
2070 2511 3.242969 GCGATCATTCTGATGTTGCACAT 60.243 43.478 2.02 2.02 42.43 3.21
2071 2512 2.096335 GCGATCATTCTGATGTTGCACA 59.904 45.455 0.00 0.00 37.20 4.57
2082 2527 1.821061 CGGGCCCTAGCGATCATTCT 61.821 60.000 22.43 0.00 41.24 2.40
2085 2530 4.008933 GCGGGCCCTAGCGATCAT 62.009 66.667 22.43 0.00 41.24 2.45
2100 2545 2.943345 GAGTGAATATGGGCGCGCG 61.943 63.158 28.44 28.44 0.00 6.86
2101 2546 2.607892 GGAGTGAATATGGGCGCGC 61.608 63.158 25.94 25.94 0.00 6.86
2102 2547 1.961277 GGGAGTGAATATGGGCGCG 60.961 63.158 0.00 0.00 0.00 6.86
2103 2548 1.148273 TGGGAGTGAATATGGGCGC 59.852 57.895 0.00 0.00 0.00 6.53
2105 2550 0.846693 AGGTGGGAGTGAATATGGGC 59.153 55.000 0.00 0.00 0.00 5.36
2106 2551 2.936202 CAAGGTGGGAGTGAATATGGG 58.064 52.381 0.00 0.00 0.00 4.00
2107 2552 2.301346 GCAAGGTGGGAGTGAATATGG 58.699 52.381 0.00 0.00 0.00 2.74
2108 2553 2.301346 GGCAAGGTGGGAGTGAATATG 58.699 52.381 0.00 0.00 0.00 1.78
2109 2554 1.134098 CGGCAAGGTGGGAGTGAATAT 60.134 52.381 0.00 0.00 0.00 1.28
2110 2555 0.251916 CGGCAAGGTGGGAGTGAATA 59.748 55.000 0.00 0.00 0.00 1.75
2111 2556 1.002134 CGGCAAGGTGGGAGTGAAT 60.002 57.895 0.00 0.00 0.00 2.57
2112 2557 2.429930 CGGCAAGGTGGGAGTGAA 59.570 61.111 0.00 0.00 0.00 3.18
2113 2558 3.636231 CCGGCAAGGTGGGAGTGA 61.636 66.667 0.00 0.00 34.51 3.41
2114 2559 3.636231 TCCGGCAAGGTGGGAGTG 61.636 66.667 0.00 0.00 41.99 3.51
2115 2560 3.637273 GTCCGGCAAGGTGGGAGT 61.637 66.667 0.00 0.00 41.99 3.85
2116 2561 4.410400 GGTCCGGCAAGGTGGGAG 62.410 72.222 0.00 0.00 41.99 4.30
2129 2578 0.539518 GAAGAGAAGAGGGCTGGTCC 59.460 60.000 0.00 0.00 0.00 4.46
2175 2624 2.253610 AGTGGTGACCTTGACCGATTA 58.746 47.619 2.11 0.00 36.12 1.75
2178 2627 0.963962 GTAGTGGTGACCTTGACCGA 59.036 55.000 2.11 0.00 36.12 4.69
2211 2660 7.767250 TCGATGATCTAGAAGTAATGACCAT 57.233 36.000 0.00 0.00 0.00 3.55
2243 2692 4.454847 CACTCATAGCCATCATTCCATGAC 59.545 45.833 0.00 0.00 43.01 3.06
2244 2693 4.506095 CCACTCATAGCCATCATTCCATGA 60.506 45.833 0.00 0.00 44.55 3.07
2246 2695 3.654321 TCCACTCATAGCCATCATTCCAT 59.346 43.478 0.00 0.00 0.00 3.41
2289 2738 4.155826 TGATGGCCGTTCACATTTAGAAAG 59.844 41.667 0.00 0.00 0.00 2.62
2295 2744 1.068610 CGTTGATGGCCGTTCACATTT 60.069 47.619 7.66 0.00 0.00 2.32
2297 2746 1.922135 GCGTTGATGGCCGTTCACAT 61.922 55.000 7.66 0.00 0.00 3.21
2300 2749 2.031919 AGCGTTGATGGCCGTTCA 59.968 55.556 0.00 0.54 0.00 3.18
2304 2753 1.577328 AAAGTGAGCGTTGATGGCCG 61.577 55.000 0.00 0.00 0.00 6.13
2308 2757 3.607422 TCACAAAAGTGAGCGTTGATG 57.393 42.857 0.00 0.00 0.00 3.07
2314 2763 3.100817 CACAACTTCACAAAAGTGAGCG 58.899 45.455 0.00 0.00 34.56 5.03
2316 2765 6.128172 ACTCTTCACAACTTCACAAAAGTGAG 60.128 38.462 0.00 0.00 37.32 3.51
2318 2767 5.942872 ACTCTTCACAACTTCACAAAAGTG 58.057 37.500 0.00 0.00 0.00 3.16
2319 2768 7.552687 TCATACTCTTCACAACTTCACAAAAGT 59.447 33.333 0.00 0.00 0.00 2.66
2322 2771 7.552687 AGTTCATACTCTTCACAACTTCACAAA 59.447 33.333 0.00 0.00 0.00 2.83
2323 2772 7.047891 AGTTCATACTCTTCACAACTTCACAA 58.952 34.615 0.00 0.00 0.00 3.33
2324 2773 6.582636 AGTTCATACTCTTCACAACTTCACA 58.417 36.000 0.00 0.00 0.00 3.58
2325 2774 8.651588 CATAGTTCATACTCTTCACAACTTCAC 58.348 37.037 0.00 0.00 35.78 3.18
2326 2775 8.585018 TCATAGTTCATACTCTTCACAACTTCA 58.415 33.333 0.00 0.00 35.78 3.02
2327 2776 8.865001 GTCATAGTTCATACTCTTCACAACTTC 58.135 37.037 0.00 0.00 35.78 3.01
2328 2777 8.589338 AGTCATAGTTCATACTCTTCACAACTT 58.411 33.333 0.00 0.00 35.78 2.66
2329 2778 8.128322 AGTCATAGTTCATACTCTTCACAACT 57.872 34.615 0.00 0.00 35.78 3.16
2330 2779 7.219154 CGAGTCATAGTTCATACTCTTCACAAC 59.781 40.741 0.00 0.00 36.94 3.32
2331 2780 7.251281 CGAGTCATAGTTCATACTCTTCACAA 58.749 38.462 0.00 0.00 36.94 3.33
2340 2789 4.308899 ACAGCCGAGTCATAGTTCATAC 57.691 45.455 0.00 0.00 0.00 2.39
2349 2798 1.139058 GGGTATGAACAGCCGAGTCAT 59.861 52.381 0.00 0.00 0.00 3.06
2370 2819 1.479323 CATCAATGCCCCCTTTGTGAG 59.521 52.381 0.00 0.00 0.00 3.51
2375 2824 0.413037 TGACCATCAATGCCCCCTTT 59.587 50.000 0.00 0.00 0.00 3.11
2376 2825 0.638292 ATGACCATCAATGCCCCCTT 59.362 50.000 0.00 0.00 0.00 3.95
2377 2826 1.145738 GTATGACCATCAATGCCCCCT 59.854 52.381 0.00 0.00 0.00 4.79
2378 2827 1.145738 AGTATGACCATCAATGCCCCC 59.854 52.381 0.00 0.00 0.00 5.40
2379 2828 2.158623 TCAGTATGACCATCAATGCCCC 60.159 50.000 0.00 0.00 42.56 5.80
2380 2829 3.144506 CTCAGTATGACCATCAATGCCC 58.855 50.000 0.00 0.00 42.56 5.36
2381 2830 4.063689 CTCTCAGTATGACCATCAATGCC 58.936 47.826 0.00 0.00 42.56 4.40
2382 2831 4.953667 TCTCTCAGTATGACCATCAATGC 58.046 43.478 0.00 0.00 42.56 3.56
2383 2832 6.402456 TCTCTCTCAGTATGACCATCAATG 57.598 41.667 0.00 0.00 42.56 2.82
2384 2833 6.838090 TCTTCTCTCTCAGTATGACCATCAAT 59.162 38.462 0.00 0.00 42.56 2.57
2385 2834 6.190587 TCTTCTCTCTCAGTATGACCATCAA 58.809 40.000 0.00 0.00 42.56 2.57
2386 2835 5.760131 TCTTCTCTCTCAGTATGACCATCA 58.240 41.667 0.00 0.00 42.56 3.07
2387 2836 6.899393 ATCTTCTCTCTCAGTATGACCATC 57.101 41.667 0.00 0.00 42.56 3.51
2388 2837 8.004215 AGTAATCTTCTCTCTCAGTATGACCAT 58.996 37.037 0.00 0.00 42.56 3.55
2389 2838 7.284261 CAGTAATCTTCTCTCTCAGTATGACCA 59.716 40.741 0.00 0.00 42.56 4.02
2390 2839 7.648142 CAGTAATCTTCTCTCTCAGTATGACC 58.352 42.308 0.00 0.00 42.56 4.02
2391 2840 7.013274 AGCAGTAATCTTCTCTCTCAGTATGAC 59.987 40.741 0.00 0.00 42.56 3.06
2393 2842 7.275888 AGCAGTAATCTTCTCTCTCAGTATG 57.724 40.000 0.00 0.00 37.54 2.39
2394 2843 7.896383 AAGCAGTAATCTTCTCTCTCAGTAT 57.104 36.000 0.00 0.00 0.00 2.12
2395 2844 7.710676 AAAGCAGTAATCTTCTCTCTCAGTA 57.289 36.000 0.00 0.00 0.00 2.74
2396 2845 6.603940 AAAGCAGTAATCTTCTCTCTCAGT 57.396 37.500 0.00 0.00 0.00 3.41
2397 2846 6.183360 GCAAAAGCAGTAATCTTCTCTCTCAG 60.183 42.308 0.00 0.00 0.00 3.35
2398 2847 5.641209 GCAAAAGCAGTAATCTTCTCTCTCA 59.359 40.000 0.00 0.00 0.00 3.27
2399 2848 5.641209 TGCAAAAGCAGTAATCTTCTCTCTC 59.359 40.000 0.00 0.00 0.00 3.20
2400 2849 5.555017 TGCAAAAGCAGTAATCTTCTCTCT 58.445 37.500 0.00 0.00 0.00 3.10
2401 2850 5.869753 TGCAAAAGCAGTAATCTTCTCTC 57.130 39.130 0.00 0.00 0.00 3.20
2402 2851 5.942236 TCATGCAAAAGCAGTAATCTTCTCT 59.058 36.000 0.00 0.00 0.00 3.10
2403 2852 6.187125 TCATGCAAAAGCAGTAATCTTCTC 57.813 37.500 0.00 0.00 0.00 2.87
2404 2853 6.561614 CATCATGCAAAAGCAGTAATCTTCT 58.438 36.000 0.00 0.00 0.00 2.85
2405 2854 5.231568 GCATCATGCAAAAGCAGTAATCTTC 59.768 40.000 4.20 0.00 44.26 2.87
2406 2855 5.107133 GCATCATGCAAAAGCAGTAATCTT 58.893 37.500 4.20 0.00 44.26 2.40
2407 2856 4.679662 GCATCATGCAAAAGCAGTAATCT 58.320 39.130 4.20 0.00 44.26 2.40
2408 2857 3.484649 CGCATCATGCAAAAGCAGTAATC 59.515 43.478 11.00 0.00 45.36 1.75
2409 2858 3.441163 CGCATCATGCAAAAGCAGTAAT 58.559 40.909 11.00 0.00 45.36 1.89
2410 2859 2.415759 CCGCATCATGCAAAAGCAGTAA 60.416 45.455 11.00 0.00 45.36 2.24
2411 2860 1.132834 CCGCATCATGCAAAAGCAGTA 59.867 47.619 11.00 0.00 45.36 2.74
2412 2861 0.108992 CCGCATCATGCAAAAGCAGT 60.109 50.000 11.00 0.00 45.36 4.40
2413 2862 1.418342 GCCGCATCATGCAAAAGCAG 61.418 55.000 11.00 0.00 45.36 4.24
2414 2863 1.446445 GCCGCATCATGCAAAAGCA 60.446 52.632 11.00 0.00 45.36 3.91
2415 2864 0.101040 TAGCCGCATCATGCAAAAGC 59.899 50.000 11.00 6.63 45.36 3.51
2416 2865 2.292569 AGATAGCCGCATCATGCAAAAG 59.707 45.455 11.00 0.00 45.36 2.27
2417 2866 2.300433 AGATAGCCGCATCATGCAAAA 58.700 42.857 11.00 0.00 45.36 2.44
2418 2867 1.971481 AGATAGCCGCATCATGCAAA 58.029 45.000 11.00 0.00 45.36 3.68
2419 2868 2.837532 TAGATAGCCGCATCATGCAA 57.162 45.000 11.00 0.00 45.36 4.08
2420 2869 2.691927 CTTAGATAGCCGCATCATGCA 58.308 47.619 11.00 0.00 45.36 3.96
2421 2870 1.396301 GCTTAGATAGCCGCATCATGC 59.604 52.381 0.00 0.00 44.48 4.06
2432 2881 0.737715 GATGCGGCCGGCTTAGATAG 60.738 60.000 29.38 10.09 44.05 2.08
2433 2882 1.292223 GATGCGGCCGGCTTAGATA 59.708 57.895 29.38 11.04 44.05 1.98
2434 2883 2.031163 GATGCGGCCGGCTTAGAT 59.969 61.111 29.38 13.31 44.05 1.98
2435 2884 4.585526 CGATGCGGCCGGCTTAGA 62.586 66.667 29.38 8.50 44.05 2.10
2447 2896 3.260483 CTGCACGAGGAGCGATGC 61.260 66.667 0.00 0.00 44.57 3.91
2462 2911 1.429463 GGTTTAGTGTCACCTCGCTG 58.571 55.000 0.00 0.00 0.00 5.18
2463 2912 0.320697 GGGTTTAGTGTCACCTCGCT 59.679 55.000 0.00 0.00 33.09 4.93
2473 2922 1.303806 CGGGGTTGGGGGTTTAGTG 60.304 63.158 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.