Multiple sequence alignment - TraesCS2A01G452500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G452500 chr2A 100.000 3261 0 0 1 3261 701869361 701866101 0.000000e+00 6023.0
1 TraesCS2A01G452500 chr2A 89.115 1277 108 18 998 2262 701497127 701498384 0.000000e+00 1559.0
2 TraesCS2A01G452500 chr2A 92.829 516 35 2 1 516 569287076 569287589 0.000000e+00 747.0
3 TraesCS2A01G452500 chr2A 91.876 517 41 1 1 516 726094412 726094928 0.000000e+00 721.0
4 TraesCS2A01G452500 chr2A 92.899 338 23 1 1185 1522 628063331 628062995 1.050000e-134 490.0
5 TraesCS2A01G452500 chr2D 94.724 1668 61 6 605 2271 561909541 561907900 0.000000e+00 2567.0
6 TraesCS2A01G452500 chr2D 85.257 1655 156 45 645 2262 561851272 561852875 0.000000e+00 1624.0
7 TraesCS2A01G452500 chr2D 90.452 398 34 2 2866 3259 561907686 561907289 3.730000e-144 521.0
8 TraesCS2A01G452500 chr2D 92.593 108 5 3 2331 2438 561907798 561907694 5.640000e-33 152.0
9 TraesCS2A01G452500 chr2B 94.320 1690 70 9 608 2279 671040466 671038785 0.000000e+00 2566.0
10 TraesCS2A01G452500 chr2B 89.437 1278 103 19 998 2262 670853254 670854512 0.000000e+00 1583.0
11 TraesCS2A01G452500 chr2B 86.038 265 34 3 2995 3259 671036975 671036714 6.890000e-72 281.0
12 TraesCS2A01G452500 chr2B 88.660 97 10 1 2341 2437 671037068 671036973 2.060000e-22 117.0
13 TraesCS2A01G452500 chr4A 93.037 517 33 2 1 516 319198355 319198869 0.000000e+00 752.0
14 TraesCS2A01G452500 chr3A 92.857 518 34 2 1 516 663280183 663279667 0.000000e+00 749.0
15 TraesCS2A01G452500 chr3A 91.892 518 40 1 1 516 518484835 518484318 0.000000e+00 723.0
16 TraesCS2A01G452500 chr3A 80.925 173 29 4 2730 2901 508219095 508218926 2.040000e-27 134.0
17 TraesCS2A01G452500 chr1A 92.636 516 37 1 1 516 489642828 489643342 0.000000e+00 741.0
18 TraesCS2A01G452500 chr1A 92.456 517 35 4 1 516 469648177 469648690 0.000000e+00 736.0
19 TraesCS2A01G452500 chr6B 92.115 520 38 2 1 520 129267303 129266787 0.000000e+00 730.0
20 TraesCS2A01G452500 chr6A 91.892 518 40 2 1 516 91382313 91381796 0.000000e+00 723.0
21 TraesCS2A01G452500 chr6A 97.059 34 1 0 2573 2606 7344098 7344131 1.260000e-04 58.4
22 TraesCS2A01G452500 chr1B 85.211 426 49 9 2575 2988 41854705 41855128 3.010000e-115 425.0
23 TraesCS2A01G452500 chr1B 83.974 156 23 2 2694 2847 633783006 633782851 7.290000e-32 148.0
24 TraesCS2A01G452500 chr6D 75.962 416 86 11 2574 2983 10094554 10094147 5.520000e-48 202.0
25 TraesCS2A01G452500 chr6D 74.384 203 43 7 2582 2777 237520407 237520207 9.700000e-11 78.7
26 TraesCS2A01G452500 chr7B 93.182 132 9 0 1545 1676 506596659 506596790 9.230000e-46 195.0
27 TraesCS2A01G452500 chr7B 84.746 59 8 1 2575 2633 41022077 41022020 1.260000e-04 58.4
28 TraesCS2A01G452500 chr7A 80.078 256 49 2 2730 2983 19509290 19509035 4.300000e-44 189.0
29 TraesCS2A01G452500 chr7A 83.333 156 24 2 2694 2847 715757596 715757441 3.390000e-30 143.0
30 TraesCS2A01G452500 chr7A 79.845 129 18 7 2738 2861 45693899 45693774 1.610000e-13 87.9
31 TraesCS2A01G452500 chr7A 79.518 83 15 2 2574 2655 667199905 667199986 1.260000e-04 58.4
32 TraesCS2A01G452500 chr5D 95.614 114 5 0 1300 1413 436205412 436205525 2.000000e-42 183.0
33 TraesCS2A01G452500 chrUn 79.845 129 18 7 2738 2861 370393160 370393285 1.610000e-13 87.9
34 TraesCS2A01G452500 chr7D 100.000 28 0 0 2579 2606 448758420 448758447 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G452500 chr2A 701866101 701869361 3260 True 6023 6023 100.000000 1 3261 1 chr2A.!!$R2 3260
1 TraesCS2A01G452500 chr2A 701497127 701498384 1257 False 1559 1559 89.115000 998 2262 1 chr2A.!!$F2 1264
2 TraesCS2A01G452500 chr2A 569287076 569287589 513 False 747 747 92.829000 1 516 1 chr2A.!!$F1 515
3 TraesCS2A01G452500 chr2A 726094412 726094928 516 False 721 721 91.876000 1 516 1 chr2A.!!$F3 515
4 TraesCS2A01G452500 chr2D 561851272 561852875 1603 False 1624 1624 85.257000 645 2262 1 chr2D.!!$F1 1617
5 TraesCS2A01G452500 chr2D 561907289 561909541 2252 True 1080 2567 92.589667 605 3259 3 chr2D.!!$R1 2654
6 TraesCS2A01G452500 chr2B 670853254 670854512 1258 False 1583 1583 89.437000 998 2262 1 chr2B.!!$F1 1264
7 TraesCS2A01G452500 chr2B 671036714 671040466 3752 True 988 2566 89.672667 608 3259 3 chr2B.!!$R1 2651
8 TraesCS2A01G452500 chr4A 319198355 319198869 514 False 752 752 93.037000 1 516 1 chr4A.!!$F1 515
9 TraesCS2A01G452500 chr3A 663279667 663280183 516 True 749 749 92.857000 1 516 1 chr3A.!!$R3 515
10 TraesCS2A01G452500 chr3A 518484318 518484835 517 True 723 723 91.892000 1 516 1 chr3A.!!$R2 515
11 TraesCS2A01G452500 chr1A 489642828 489643342 514 False 741 741 92.636000 1 516 1 chr1A.!!$F2 515
12 TraesCS2A01G452500 chr1A 469648177 469648690 513 False 736 736 92.456000 1 516 1 chr1A.!!$F1 515
13 TraesCS2A01G452500 chr6B 129266787 129267303 516 True 730 730 92.115000 1 520 1 chr6B.!!$R1 519
14 TraesCS2A01G452500 chr6A 91381796 91382313 517 True 723 723 91.892000 1 516 1 chr6A.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 545 0.250858 TGCCTGACCATCACAAGTGG 60.251 55.0 0.00 0.0 42.55 4.00 F
553 559 0.321671 AAGTGGTCACGATCACCTGG 59.678 55.0 6.82 0.0 43.27 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2222 2302 0.034896 ACAGTCCGGTGTTGGTCATC 59.965 55.0 0.0 0.0 0.00 2.92 R
2531 4273 0.107848 CGGCGGACCTCCAAATTAGT 60.108 55.0 0.0 0.0 35.14 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 2.251642 GCCAGTGAAAACGGCGACT 61.252 57.895 16.62 2.36 35.79 4.18
371 377 3.773418 TTTTATTCACGTCCACCCTGA 57.227 42.857 0.00 0.00 0.00 3.86
382 388 3.606687 GTCCACCCTGAACACGATTTAT 58.393 45.455 0.00 0.00 0.00 1.40
520 526 0.994247 TGATGGAGTTGGCCTCACAT 59.006 50.000 3.32 6.38 42.40 3.21
521 527 1.340308 TGATGGAGTTGGCCTCACATG 60.340 52.381 3.32 0.00 42.40 3.21
522 528 0.682209 ATGGAGTTGGCCTCACATGC 60.682 55.000 3.32 0.00 42.40 4.06
528 534 2.439156 GGCCTCACATGCCTGACC 60.439 66.667 0.00 0.00 45.70 4.02
529 535 2.352422 GCCTCACATGCCTGACCA 59.648 61.111 0.00 0.00 0.00 4.02
530 536 1.077212 GCCTCACATGCCTGACCAT 60.077 57.895 0.00 0.00 0.00 3.55
531 537 1.099879 GCCTCACATGCCTGACCATC 61.100 60.000 0.00 0.00 0.00 3.51
532 538 0.253894 CCTCACATGCCTGACCATCA 59.746 55.000 0.00 0.00 0.00 3.07
533 539 1.376543 CTCACATGCCTGACCATCAC 58.623 55.000 0.00 0.00 0.00 3.06
534 540 0.691904 TCACATGCCTGACCATCACA 59.308 50.000 0.00 0.00 0.00 3.58
535 541 1.073603 TCACATGCCTGACCATCACAA 59.926 47.619 0.00 0.00 0.00 3.33
536 542 1.471287 CACATGCCTGACCATCACAAG 59.529 52.381 0.00 0.00 0.00 3.16
537 543 1.074405 ACATGCCTGACCATCACAAGT 59.926 47.619 0.00 0.00 0.00 3.16
538 544 1.471287 CATGCCTGACCATCACAAGTG 59.529 52.381 0.00 0.00 0.00 3.16
539 545 0.250858 TGCCTGACCATCACAAGTGG 60.251 55.000 0.00 0.00 42.55 4.00
544 550 3.305709 ACCATCACAAGTGGTCACG 57.694 52.632 0.00 0.00 46.79 4.35
545 551 0.756294 ACCATCACAAGTGGTCACGA 59.244 50.000 0.00 0.00 46.79 4.35
546 552 1.347707 ACCATCACAAGTGGTCACGAT 59.652 47.619 0.00 0.00 46.79 3.73
547 553 2.002586 CCATCACAAGTGGTCACGATC 58.997 52.381 0.00 0.00 36.20 3.69
548 554 2.612721 CCATCACAAGTGGTCACGATCA 60.613 50.000 0.00 0.00 36.20 2.92
549 555 2.148916 TCACAAGTGGTCACGATCAC 57.851 50.000 2.05 2.05 42.60 3.06
550 556 1.148310 CACAAGTGGTCACGATCACC 58.852 55.000 6.82 0.00 43.27 4.02
551 557 1.048601 ACAAGTGGTCACGATCACCT 58.951 50.000 6.82 0.00 43.27 4.00
552 558 1.270305 ACAAGTGGTCACGATCACCTG 60.270 52.381 6.82 7.12 43.27 4.00
553 559 0.321671 AAGTGGTCACGATCACCTGG 59.678 55.000 6.82 0.00 43.27 4.45
554 560 1.079127 GTGGTCACGATCACCTGGG 60.079 63.158 0.00 0.00 36.46 4.45
555 561 2.290287 TGGTCACGATCACCTGGGG 61.290 63.158 0.00 0.00 34.66 4.96
556 562 1.987855 GGTCACGATCACCTGGGGA 60.988 63.158 0.00 0.00 0.00 4.81
557 563 1.517832 GTCACGATCACCTGGGGAG 59.482 63.158 4.33 0.00 0.00 4.30
558 564 0.970937 GTCACGATCACCTGGGGAGA 60.971 60.000 4.33 0.00 0.00 3.71
559 565 0.684479 TCACGATCACCTGGGGAGAG 60.684 60.000 4.33 3.19 0.00 3.20
560 566 2.060980 ACGATCACCTGGGGAGAGC 61.061 63.158 4.33 0.00 0.00 4.09
561 567 2.060383 CGATCACCTGGGGAGAGCA 61.060 63.158 4.33 0.00 28.46 4.26
562 568 1.617018 CGATCACCTGGGGAGAGCAA 61.617 60.000 4.33 0.00 28.46 3.91
563 569 0.620556 GATCACCTGGGGAGAGCAAA 59.379 55.000 4.33 0.00 29.60 3.68
564 570 1.004745 GATCACCTGGGGAGAGCAAAA 59.995 52.381 4.33 0.00 29.60 2.44
565 571 1.075601 TCACCTGGGGAGAGCAAAAT 58.924 50.000 0.00 0.00 0.00 1.82
566 572 1.004745 TCACCTGGGGAGAGCAAAATC 59.995 52.381 0.00 0.00 0.00 2.17
567 573 1.005215 CACCTGGGGAGAGCAAAATCT 59.995 52.381 0.00 0.00 0.00 2.40
568 574 1.283321 ACCTGGGGAGAGCAAAATCTC 59.717 52.381 0.00 0.00 44.21 2.75
569 575 1.661341 CTGGGGAGAGCAAAATCTCG 58.339 55.000 0.00 0.00 45.60 4.04
574 580 3.868888 GGAGAGCAAAATCTCGCATAC 57.131 47.619 0.00 0.00 45.60 2.39
575 581 3.462021 GGAGAGCAAAATCTCGCATACT 58.538 45.455 0.00 0.00 45.60 2.12
576 582 3.873952 GGAGAGCAAAATCTCGCATACTT 59.126 43.478 0.00 0.00 45.60 2.24
577 583 5.050490 GGAGAGCAAAATCTCGCATACTTA 58.950 41.667 0.00 0.00 45.60 2.24
578 584 5.176590 GGAGAGCAAAATCTCGCATACTTAG 59.823 44.000 0.00 0.00 45.60 2.18
579 585 5.907207 AGAGCAAAATCTCGCATACTTAGA 58.093 37.500 0.00 0.00 38.12 2.10
580 586 6.520272 AGAGCAAAATCTCGCATACTTAGAT 58.480 36.000 0.00 0.00 38.12 1.98
581 587 6.989169 AGAGCAAAATCTCGCATACTTAGATT 59.011 34.615 0.00 0.00 40.74 2.40
582 588 7.497249 AGAGCAAAATCTCGCATACTTAGATTT 59.503 33.333 0.00 0.00 46.65 2.17
583 589 7.412853 AGCAAAATCTCGCATACTTAGATTTG 58.587 34.615 9.57 6.33 44.92 2.32
584 590 7.280876 AGCAAAATCTCGCATACTTAGATTTGA 59.719 33.333 9.57 0.00 44.92 2.69
585 591 7.910162 GCAAAATCTCGCATACTTAGATTTGAA 59.090 33.333 9.57 0.00 44.92 2.69
586 592 9.773328 CAAAATCTCGCATACTTAGATTTGAAA 57.227 29.630 9.57 0.00 44.92 2.69
589 595 9.941664 AATCTCGCATACTTAGATTTGAAATTG 57.058 29.630 0.00 0.00 36.76 2.32
590 596 8.716646 TCTCGCATACTTAGATTTGAAATTGA 57.283 30.769 0.00 0.00 0.00 2.57
591 597 8.820933 TCTCGCATACTTAGATTTGAAATTGAG 58.179 33.333 0.00 0.00 0.00 3.02
592 598 8.716646 TCGCATACTTAGATTTGAAATTGAGA 57.283 30.769 0.00 0.00 0.00 3.27
593 599 9.330063 TCGCATACTTAGATTTGAAATTGAGAT 57.670 29.630 0.00 0.00 0.00 2.75
707 713 5.316987 GTCTGGATTCTTTTTCCTCCAAGA 58.683 41.667 0.00 0.00 37.34 3.02
852 871 1.091771 TACTCGATCGACGGTGGTCC 61.092 60.000 15.15 0.00 40.17 4.46
909 936 1.368345 CCGTGCGCAATTGGATCAGA 61.368 55.000 14.00 0.00 0.00 3.27
913 940 3.605461 CGTGCGCAATTGGATCAGATTAG 60.605 47.826 14.00 0.00 0.00 1.73
928 955 5.165652 TCAGATTAGGATTATTCCCCTGCT 58.834 41.667 0.00 0.00 43.76 4.24
933 960 1.546548 GGATTATTCCCCTGCTCCAGC 60.547 57.143 0.00 0.00 37.55 4.85
944 971 0.463295 TGCTCCAGCTGCTATCTTGC 60.463 55.000 8.66 3.72 42.66 4.01
992 1019 4.727507 TTGCAGGATACAGAGAACTCTC 57.272 45.455 0.99 0.00 43.17 3.20
1241 1318 3.403057 CGGTGGTGCTCGTCAACG 61.403 66.667 0.00 0.00 37.75 4.10
1324 1401 3.512516 GGCGGCAGCTTGTGGATC 61.513 66.667 9.17 0.00 44.37 3.36
1593 1670 3.259374 TCCTACTTCCTCAACAAGCAGAG 59.741 47.826 0.00 0.00 0.00 3.35
1753 1830 3.141488 TCGGCGCTCTTCTCCCTC 61.141 66.667 7.64 0.00 0.00 4.30
1777 1854 1.297689 GTCCCTGATGCAGCTGACA 59.702 57.895 20.43 15.57 34.31 3.58
1808 1885 1.216710 CTCAGGAGCGACACCTTCC 59.783 63.158 0.00 0.00 35.35 3.46
1923 2000 1.065928 GCGAGATGGACGGGTACAG 59.934 63.158 0.00 0.00 0.00 2.74
1925 2002 1.442148 GAGATGGACGGGTACAGGC 59.558 63.158 0.00 0.00 0.00 4.85
2047 2124 0.392706 TCACCAACGTGATCAGCACT 59.607 50.000 0.00 0.00 44.20 4.40
2220 2300 2.398803 CTGAGAGATCAGCCGACGA 58.601 57.895 0.00 0.00 0.00 4.20
2221 2301 0.028770 CTGAGAGATCAGCCGACGAC 59.971 60.000 0.00 0.00 0.00 4.34
2222 2302 1.010574 GAGAGATCAGCCGACGACG 60.011 63.158 0.00 0.00 39.43 5.12
2271 2351 4.149922 CGCTACAGAGTGAACAAAATTCGA 59.850 41.667 0.00 0.00 34.95 3.71
2272 2352 5.612865 GCTACAGAGTGAACAAAATTCGAG 58.387 41.667 0.00 0.00 0.00 4.04
2273 2353 4.474226 ACAGAGTGAACAAAATTCGAGC 57.526 40.909 0.00 0.00 0.00 5.03
2274 2354 4.130118 ACAGAGTGAACAAAATTCGAGCT 58.870 39.130 0.00 0.00 0.00 4.09
2275 2355 4.024556 ACAGAGTGAACAAAATTCGAGCTG 60.025 41.667 0.00 0.00 0.00 4.24
2280 3994 5.066505 AGTGAACAAAATTCGAGCTGAAACT 59.933 36.000 0.00 0.00 40.71 2.66
2288 4002 6.713792 AATTCGAGCTGAAACTAGAAGAAC 57.286 37.500 0.00 0.00 40.71 3.01
2290 4004 4.799678 TCGAGCTGAAACTAGAAGAACAG 58.200 43.478 0.00 0.00 0.00 3.16
2291 4005 4.519350 TCGAGCTGAAACTAGAAGAACAGA 59.481 41.667 0.00 0.00 0.00 3.41
2292 4006 4.856487 CGAGCTGAAACTAGAAGAACAGAG 59.144 45.833 0.00 0.00 0.00 3.35
2293 4007 4.565022 AGCTGAAACTAGAAGAACAGAGC 58.435 43.478 0.00 0.00 0.00 4.09
2294 4008 4.039730 AGCTGAAACTAGAAGAACAGAGCA 59.960 41.667 0.00 0.00 0.00 4.26
2295 4009 4.934602 GCTGAAACTAGAAGAACAGAGCAT 59.065 41.667 0.00 0.00 0.00 3.79
2296 4010 5.411053 GCTGAAACTAGAAGAACAGAGCATT 59.589 40.000 0.00 0.00 0.00 3.56
2297 4011 6.072783 GCTGAAACTAGAAGAACAGAGCATTT 60.073 38.462 0.00 0.00 0.00 2.32
2298 4012 7.521261 GCTGAAACTAGAAGAACAGAGCATTTT 60.521 37.037 0.00 0.00 0.00 1.82
2299 4013 7.865707 TGAAACTAGAAGAACAGAGCATTTTC 58.134 34.615 0.00 0.00 0.00 2.29
2300 4014 6.473397 AACTAGAAGAACAGAGCATTTTCG 57.527 37.500 0.00 0.00 0.00 3.46
2301 4015 4.932200 ACTAGAAGAACAGAGCATTTTCGG 59.068 41.667 0.00 0.00 0.00 4.30
2302 4016 3.077359 AGAAGAACAGAGCATTTTCGGG 58.923 45.455 0.00 0.00 0.00 5.14
2398 4140 0.378257 CACATCGAAATTCAGGGGCG 59.622 55.000 0.00 0.00 0.00 6.13
2438 4180 3.945285 GGGGGATTTATGTATGTATGCCG 59.055 47.826 0.00 0.00 30.06 5.69
2440 4182 4.394920 GGGGATTTATGTATGTATGCCGTG 59.605 45.833 0.00 0.00 30.06 4.94
2441 4183 4.142687 GGGATTTATGTATGTATGCCGTGC 60.143 45.833 0.00 0.00 0.00 5.34
2442 4184 4.142687 GGATTTATGTATGTATGCCGTGCC 60.143 45.833 0.00 0.00 0.00 5.01
2443 4185 2.073117 TATGTATGTATGCCGTGCCG 57.927 50.000 0.00 0.00 0.00 5.69
2444 4186 1.227999 ATGTATGTATGCCGTGCCGC 61.228 55.000 0.00 0.00 0.00 6.53
2445 4187 1.594293 GTATGTATGCCGTGCCGCT 60.594 57.895 0.00 0.00 0.00 5.52
2446 4188 0.319211 GTATGTATGCCGTGCCGCTA 60.319 55.000 0.00 0.00 0.00 4.26
2447 4189 0.389757 TATGTATGCCGTGCCGCTAA 59.610 50.000 0.00 0.00 0.00 3.09
2448 4190 0.462937 ATGTATGCCGTGCCGCTAAA 60.463 50.000 0.00 0.00 0.00 1.85
2449 4191 0.462937 TGTATGCCGTGCCGCTAAAT 60.463 50.000 0.00 0.00 0.00 1.40
2450 4192 0.041312 GTATGCCGTGCCGCTAAATG 60.041 55.000 0.00 0.00 0.00 2.32
2451 4193 1.163420 TATGCCGTGCCGCTAAATGG 61.163 55.000 0.00 0.00 0.00 3.16
2458 4200 3.924507 CCGCTAAATGGCCTTGCT 58.075 55.556 3.32 0.00 0.00 3.91
2459 4201 2.192605 CCGCTAAATGGCCTTGCTT 58.807 52.632 3.32 0.00 0.00 3.91
2460 4202 0.532115 CCGCTAAATGGCCTTGCTTT 59.468 50.000 3.32 1.34 0.00 3.51
2461 4203 1.748493 CCGCTAAATGGCCTTGCTTTA 59.252 47.619 3.32 2.50 0.00 1.85
2462 4204 2.223572 CCGCTAAATGGCCTTGCTTTAG 60.224 50.000 3.32 12.69 36.17 1.85
2463 4205 2.223572 CGCTAAATGGCCTTGCTTTAGG 60.224 50.000 19.77 11.72 34.51 2.69
2471 4213 1.251251 CCTTGCTTTAGGCTTGCTGT 58.749 50.000 0.00 0.00 42.39 4.40
2472 4214 2.436417 CCTTGCTTTAGGCTTGCTGTA 58.564 47.619 0.00 0.00 42.39 2.74
2473 4215 2.421424 CCTTGCTTTAGGCTTGCTGTAG 59.579 50.000 0.00 0.00 42.39 2.74
2474 4216 1.453155 TGCTTTAGGCTTGCTGTAGC 58.547 50.000 0.00 0.00 42.39 3.58
2482 4224 2.626088 GCTTGCTGTAGCCTTTTCAG 57.374 50.000 0.80 0.00 41.18 3.02
2504 4246 4.137849 CATGATACCGTGCTGCTAAATG 57.862 45.455 0.00 0.00 0.00 2.32
2505 4247 2.560504 TGATACCGTGCTGCTAAATGG 58.439 47.619 0.00 0.00 0.00 3.16
2506 4248 2.093181 TGATACCGTGCTGCTAAATGGT 60.093 45.455 0.00 4.38 39.12 3.55
2507 4249 2.018542 TACCGTGCTGCTAAATGGTC 57.981 50.000 5.70 0.00 36.98 4.02
2508 4250 0.324943 ACCGTGCTGCTAAATGGTCT 59.675 50.000 0.00 0.00 29.31 3.85
2509 4251 1.009829 CCGTGCTGCTAAATGGTCTC 58.990 55.000 0.00 0.00 0.00 3.36
2510 4252 1.675714 CCGTGCTGCTAAATGGTCTCA 60.676 52.381 0.00 0.00 0.00 3.27
2511 4253 2.283298 CGTGCTGCTAAATGGTCTCAT 58.717 47.619 0.00 0.00 34.56 2.90
2512 4254 2.031314 CGTGCTGCTAAATGGTCTCATG 59.969 50.000 0.00 0.00 33.18 3.07
2513 4255 3.012518 GTGCTGCTAAATGGTCTCATGT 58.987 45.455 0.00 0.00 33.18 3.21
2514 4256 4.191544 GTGCTGCTAAATGGTCTCATGTA 58.808 43.478 0.00 0.00 33.18 2.29
2515 4257 4.034510 GTGCTGCTAAATGGTCTCATGTAC 59.965 45.833 0.00 0.00 33.18 2.90
2516 4258 4.191544 GCTGCTAAATGGTCTCATGTACA 58.808 43.478 0.00 0.00 33.18 2.90
2517 4259 4.635765 GCTGCTAAATGGTCTCATGTACAA 59.364 41.667 0.00 0.00 33.18 2.41
2518 4260 5.123820 GCTGCTAAATGGTCTCATGTACAAA 59.876 40.000 0.00 0.00 33.18 2.83
2519 4261 6.183360 GCTGCTAAATGGTCTCATGTACAAAT 60.183 38.462 0.00 0.00 33.18 2.32
2520 4262 7.087409 TGCTAAATGGTCTCATGTACAAATG 57.913 36.000 0.00 0.00 33.18 2.32
2521 4263 6.658816 TGCTAAATGGTCTCATGTACAAATGT 59.341 34.615 0.00 0.00 33.18 2.71
2522 4264 6.968904 GCTAAATGGTCTCATGTACAAATGTG 59.031 38.462 0.00 0.00 33.18 3.21
2523 4265 6.899393 AAATGGTCTCATGTACAAATGTGT 57.101 33.333 0.00 0.00 36.34 3.72
2524 4266 6.500684 AATGGTCTCATGTACAAATGTGTC 57.499 37.500 0.00 0.00 34.93 3.67
2525 4267 3.993736 TGGTCTCATGTACAAATGTGTCG 59.006 43.478 0.00 0.00 39.30 4.35
2526 4268 3.181520 GGTCTCATGTACAAATGTGTCGC 60.182 47.826 0.00 0.00 39.30 5.19
2527 4269 3.679980 GTCTCATGTACAAATGTGTCGCT 59.320 43.478 0.00 0.00 39.30 4.93
2528 4270 4.862574 GTCTCATGTACAAATGTGTCGCTA 59.137 41.667 0.00 0.00 39.30 4.26
2529 4271 5.520288 GTCTCATGTACAAATGTGTCGCTAT 59.480 40.000 0.00 0.00 39.30 2.97
2530 4272 6.695713 GTCTCATGTACAAATGTGTCGCTATA 59.304 38.462 0.00 0.00 39.30 1.31
2531 4273 7.222031 GTCTCATGTACAAATGTGTCGCTATAA 59.778 37.037 0.00 0.00 39.30 0.98
2532 4274 7.222031 TCTCATGTACAAATGTGTCGCTATAAC 59.778 37.037 0.00 0.00 39.30 1.89
2533 4275 7.039270 TCATGTACAAATGTGTCGCTATAACT 58.961 34.615 0.00 0.00 39.30 2.24
2534 4276 8.192110 TCATGTACAAATGTGTCGCTATAACTA 58.808 33.333 0.00 0.00 39.30 2.24
2535 4277 8.813282 CATGTACAAATGTGTCGCTATAACTAA 58.187 33.333 0.00 0.00 39.30 2.24
2536 4278 8.936070 TGTACAAATGTGTCGCTATAACTAAT 57.064 30.769 0.00 0.00 39.30 1.73
2537 4279 9.373603 TGTACAAATGTGTCGCTATAACTAATT 57.626 29.630 0.00 0.00 39.30 1.40
2540 4282 8.181573 ACAAATGTGTCGCTATAACTAATTTGG 58.818 33.333 0.00 0.00 36.06 3.28
2541 4283 8.394877 CAAATGTGTCGCTATAACTAATTTGGA 58.605 33.333 0.00 0.00 32.52 3.53
2542 4284 7.715265 ATGTGTCGCTATAACTAATTTGGAG 57.285 36.000 0.00 0.00 0.00 3.86
2543 4285 6.046593 TGTGTCGCTATAACTAATTTGGAGG 58.953 40.000 0.00 0.00 0.00 4.30
2544 4286 6.047231 GTGTCGCTATAACTAATTTGGAGGT 58.953 40.000 0.00 0.00 0.00 3.85
2545 4287 6.200475 GTGTCGCTATAACTAATTTGGAGGTC 59.800 42.308 0.00 0.00 0.00 3.85
2546 4288 5.695363 GTCGCTATAACTAATTTGGAGGTCC 59.305 44.000 0.00 0.00 0.00 4.46
2547 4289 4.684703 CGCTATAACTAATTTGGAGGTCCG 59.315 45.833 0.00 0.00 39.43 4.79
2548 4290 4.451435 GCTATAACTAATTTGGAGGTCCGC 59.549 45.833 0.00 0.00 39.43 5.54
2549 4291 2.124277 AACTAATTTGGAGGTCCGCC 57.876 50.000 4.35 4.35 39.43 6.13
2550 4292 0.107848 ACTAATTTGGAGGTCCGCCG 60.108 55.000 7.20 0.00 40.50 6.46
2551 4293 1.436983 CTAATTTGGAGGTCCGCCGC 61.437 60.000 7.20 0.00 40.50 6.53
2552 4294 1.906105 TAATTTGGAGGTCCGCCGCT 61.906 55.000 7.20 0.00 40.50 5.52
2553 4295 1.906105 AATTTGGAGGTCCGCCGCTA 61.906 55.000 7.20 0.00 40.50 4.26
2554 4296 2.311688 ATTTGGAGGTCCGCCGCTAG 62.312 60.000 7.20 0.00 40.50 3.42
2555 4297 4.753662 TGGAGGTCCGCCGCTAGT 62.754 66.667 7.20 0.00 40.50 2.57
2556 4298 3.459063 GGAGGTCCGCCGCTAGTT 61.459 66.667 0.00 0.00 40.50 2.24
2557 4299 2.123428 GGAGGTCCGCCGCTAGTTA 61.123 63.158 0.00 0.00 40.50 2.24
2558 4300 1.669999 GGAGGTCCGCCGCTAGTTAA 61.670 60.000 0.00 0.00 40.50 2.01
2559 4301 0.174162 GAGGTCCGCCGCTAGTTAAA 59.826 55.000 0.00 0.00 40.50 1.52
2560 4302 0.609662 AGGTCCGCCGCTAGTTAAAA 59.390 50.000 0.00 0.00 40.50 1.52
2561 4303 0.723414 GGTCCGCCGCTAGTTAAAAC 59.277 55.000 0.00 0.00 0.00 2.43
2562 4304 1.431496 GTCCGCCGCTAGTTAAAACA 58.569 50.000 0.00 0.00 0.00 2.83
2563 4305 1.127397 GTCCGCCGCTAGTTAAAACAC 59.873 52.381 0.00 0.00 0.00 3.32
2564 4306 1.001181 TCCGCCGCTAGTTAAAACACT 59.999 47.619 0.00 0.00 0.00 3.55
2565 4307 2.230992 TCCGCCGCTAGTTAAAACACTA 59.769 45.455 0.00 0.00 0.00 2.74
2566 4308 2.995258 CCGCCGCTAGTTAAAACACTAA 59.005 45.455 0.00 0.00 0.00 2.24
2567 4309 3.619929 CCGCCGCTAGTTAAAACACTAAT 59.380 43.478 0.00 0.00 0.00 1.73
2568 4310 4.493545 CCGCCGCTAGTTAAAACACTAATG 60.494 45.833 0.00 0.00 0.00 1.90
2569 4311 4.092383 CGCCGCTAGTTAAAACACTAATGT 59.908 41.667 0.00 0.00 42.46 2.71
2570 4312 5.289193 CGCCGCTAGTTAAAACACTAATGTA 59.711 40.000 0.00 0.00 38.45 2.29
2571 4313 6.019318 CGCCGCTAGTTAAAACACTAATGTAT 60.019 38.462 0.00 0.00 38.45 2.29
2572 4314 7.123830 GCCGCTAGTTAAAACACTAATGTATG 58.876 38.462 0.00 0.00 38.45 2.39
2573 4315 7.627340 CCGCTAGTTAAAACACTAATGTATGG 58.373 38.462 0.00 0.00 38.45 2.74
2574 4316 7.493320 CCGCTAGTTAAAACACTAATGTATGGA 59.507 37.037 0.00 0.00 38.45 3.41
2575 4317 8.540492 CGCTAGTTAAAACACTAATGTATGGAG 58.460 37.037 0.00 0.00 38.45 3.86
2576 4318 9.379791 GCTAGTTAAAACACTAATGTATGGAGT 57.620 33.333 0.00 0.00 38.45 3.85
2578 4320 8.561738 AGTTAAAACACTAATGTATGGAGTGG 57.438 34.615 6.25 0.00 43.98 4.00
2579 4321 7.610305 AGTTAAAACACTAATGTATGGAGTGGG 59.390 37.037 6.25 0.00 43.98 4.61
2580 4322 4.503714 AACACTAATGTATGGAGTGGGG 57.496 45.455 6.25 0.00 43.98 4.96
2581 4323 2.172717 ACACTAATGTATGGAGTGGGGC 59.827 50.000 6.25 0.00 43.98 5.80
2582 4324 2.172505 CACTAATGTATGGAGTGGGGCA 59.827 50.000 0.00 0.00 37.52 5.36
2583 4325 3.056080 ACTAATGTATGGAGTGGGGCAT 58.944 45.455 0.00 0.00 0.00 4.40
2584 4326 3.463329 ACTAATGTATGGAGTGGGGCATT 59.537 43.478 0.00 0.00 0.00 3.56
2585 4327 3.403228 AATGTATGGAGTGGGGCATTT 57.597 42.857 0.00 0.00 0.00 2.32
2586 4328 2.917713 TGTATGGAGTGGGGCATTTT 57.082 45.000 0.00 0.00 0.00 1.82
2587 4329 2.455557 TGTATGGAGTGGGGCATTTTG 58.544 47.619 0.00 0.00 0.00 2.44
2588 4330 1.756538 GTATGGAGTGGGGCATTTTGG 59.243 52.381 0.00 0.00 0.00 3.28
2589 4331 0.413037 ATGGAGTGGGGCATTTTGGA 59.587 50.000 0.00 0.00 0.00 3.53
2590 4332 0.251742 TGGAGTGGGGCATTTTGGAG 60.252 55.000 0.00 0.00 0.00 3.86
2591 4333 0.972471 GGAGTGGGGCATTTTGGAGG 60.972 60.000 0.00 0.00 0.00 4.30
2592 4334 1.607801 GAGTGGGGCATTTTGGAGGC 61.608 60.000 0.00 0.00 0.00 4.70
2596 4338 3.200522 GGCATTTTGGAGGCCGAG 58.799 61.111 0.00 0.00 38.04 4.63
2597 4339 2.491621 GCATTTTGGAGGCCGAGC 59.508 61.111 0.00 0.00 0.00 5.03
2598 4340 2.048603 GCATTTTGGAGGCCGAGCT 61.049 57.895 0.00 0.00 0.00 4.09
2599 4341 1.997928 GCATTTTGGAGGCCGAGCTC 61.998 60.000 2.73 2.73 0.00 4.09
2600 4342 1.077429 ATTTTGGAGGCCGAGCTCC 60.077 57.895 8.47 0.00 40.05 4.70
2601 4343 1.852157 ATTTTGGAGGCCGAGCTCCA 61.852 55.000 8.47 7.35 46.84 3.86
2603 4345 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
2604 4346 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
2605 4347 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
2606 4348 3.453070 GAGGCCGAGCTCCATGGAC 62.453 68.421 11.44 5.95 0.00 4.02
2607 4349 3.785859 GGCCGAGCTCCATGGACA 61.786 66.667 11.44 0.00 0.00 4.02
2608 4350 2.507944 GCCGAGCTCCATGGACAT 59.492 61.111 11.44 1.25 0.00 3.06
2609 4351 1.596477 GCCGAGCTCCATGGACATC 60.596 63.158 11.44 10.74 0.00 3.06
2610 4352 1.825341 CCGAGCTCCATGGACATCA 59.175 57.895 11.44 0.00 0.00 3.07
2611 4353 0.395686 CCGAGCTCCATGGACATCAT 59.604 55.000 11.44 0.00 36.31 2.45
2612 4354 1.202734 CCGAGCTCCATGGACATCATT 60.203 52.381 11.44 0.00 32.92 2.57
2613 4355 2.037641 CCGAGCTCCATGGACATCATTA 59.962 50.000 11.44 0.00 32.92 1.90
2614 4356 3.307269 CCGAGCTCCATGGACATCATTAT 60.307 47.826 11.44 0.00 32.92 1.28
2615 4357 4.321718 CGAGCTCCATGGACATCATTATT 58.678 43.478 11.44 0.00 32.92 1.40
2616 4358 4.758674 CGAGCTCCATGGACATCATTATTT 59.241 41.667 11.44 0.00 32.92 1.40
2617 4359 5.240183 CGAGCTCCATGGACATCATTATTTT 59.760 40.000 11.44 0.00 32.92 1.82
2618 4360 6.238842 CGAGCTCCATGGACATCATTATTTTT 60.239 38.462 11.44 0.00 32.92 1.94
2619 4361 7.041167 CGAGCTCCATGGACATCATTATTTTTA 60.041 37.037 11.44 0.00 32.92 1.52
2620 4362 8.537728 AGCTCCATGGACATCATTATTTTTAA 57.462 30.769 11.44 0.00 32.92 1.52
2621 4363 9.151177 AGCTCCATGGACATCATTATTTTTAAT 57.849 29.630 11.44 0.00 32.92 1.40
2622 4364 9.768662 GCTCCATGGACATCATTATTTTTAATT 57.231 29.630 11.44 0.00 32.92 1.40
2673 4415 4.545823 AAAGTCACACATGTTTGTACGG 57.454 40.909 11.59 0.00 33.76 4.02
2674 4416 3.462483 AGTCACACATGTTTGTACGGA 57.538 42.857 11.59 0.00 33.76 4.69
2675 4417 4.002906 AGTCACACATGTTTGTACGGAT 57.997 40.909 11.59 0.00 33.76 4.18
2676 4418 3.745975 AGTCACACATGTTTGTACGGATG 59.254 43.478 11.59 0.00 33.76 3.51
2677 4419 3.496884 GTCACACATGTTTGTACGGATGT 59.503 43.478 11.59 0.00 33.76 3.06
2678 4420 4.687018 GTCACACATGTTTGTACGGATGTA 59.313 41.667 11.59 0.00 33.76 2.29
2695 4437 7.948357 ACGGATGTACAGTATATTATGTGTGT 58.052 34.615 0.33 0.00 0.00 3.72
2696 4438 7.865889 ACGGATGTACAGTATATTATGTGTGTG 59.134 37.037 0.33 0.00 0.00 3.82
2697 4439 7.865889 CGGATGTACAGTATATTATGTGTGTGT 59.134 37.037 0.33 0.00 0.00 3.72
2731 4473 9.947669 GAAGATAATATGCATTATGATCCAAGC 57.052 33.333 3.54 0.00 37.44 4.01
2732 4474 9.696572 AAGATAATATGCATTATGATCCAAGCT 57.303 29.630 3.54 0.00 37.44 3.74
2737 4479 6.964807 ATGCATTATGATCCAAGCTAAACA 57.035 33.333 0.00 0.00 0.00 2.83
2738 4480 6.772360 TGCATTATGATCCAAGCTAAACAA 57.228 33.333 0.00 0.00 0.00 2.83
2739 4481 7.167924 TGCATTATGATCCAAGCTAAACAAA 57.832 32.000 0.00 0.00 0.00 2.83
2740 4482 7.609960 TGCATTATGATCCAAGCTAAACAAAA 58.390 30.769 0.00 0.00 0.00 2.44
2741 4483 8.093307 TGCATTATGATCCAAGCTAAACAAAAA 58.907 29.630 0.00 0.00 0.00 1.94
2783 4525 8.615878 TTTTTATAGTGAACAGTGCACATACT 57.384 30.769 21.04 16.22 38.70 2.12
2784 4526 7.827819 TTTATAGTGAACAGTGCACATACTC 57.172 36.000 21.04 10.18 38.70 2.59
2785 4527 5.667539 ATAGTGAACAGTGCACATACTCT 57.332 39.130 21.04 14.42 38.70 3.24
2786 4528 4.342862 AGTGAACAGTGCACATACTCTT 57.657 40.909 21.04 0.00 38.70 2.85
2787 4529 4.310769 AGTGAACAGTGCACATACTCTTC 58.689 43.478 21.04 9.86 38.70 2.87
2788 4530 4.058124 GTGAACAGTGCACATACTCTTCA 58.942 43.478 21.04 12.16 34.58 3.02
2789 4531 4.692625 GTGAACAGTGCACATACTCTTCAT 59.307 41.667 21.04 0.00 37.71 2.57
2790 4532 4.931601 TGAACAGTGCACATACTCTTCATC 59.068 41.667 21.04 3.12 32.86 2.92
2791 4533 4.541973 ACAGTGCACATACTCTTCATCA 57.458 40.909 21.04 0.00 0.00 3.07
2792 4534 5.095145 ACAGTGCACATACTCTTCATCAT 57.905 39.130 21.04 0.00 0.00 2.45
2793 4535 5.494724 ACAGTGCACATACTCTTCATCATT 58.505 37.500 21.04 0.00 0.00 2.57
2794 4536 5.942236 ACAGTGCACATACTCTTCATCATTT 59.058 36.000 21.04 0.00 0.00 2.32
2795 4537 6.093219 ACAGTGCACATACTCTTCATCATTTC 59.907 38.462 21.04 0.00 0.00 2.17
2796 4538 6.093082 CAGTGCACATACTCTTCATCATTTCA 59.907 38.462 21.04 0.00 0.00 2.69
2797 4539 6.656270 AGTGCACATACTCTTCATCATTTCAA 59.344 34.615 21.04 0.00 0.00 2.69
2798 4540 7.175467 AGTGCACATACTCTTCATCATTTCAAA 59.825 33.333 21.04 0.00 0.00 2.69
2799 4541 7.809331 GTGCACATACTCTTCATCATTTCAAAA 59.191 33.333 13.17 0.00 0.00 2.44
2800 4542 8.525316 TGCACATACTCTTCATCATTTCAAAAT 58.475 29.630 0.00 0.00 0.00 1.82
2801 4543 9.017669 GCACATACTCTTCATCATTTCAAAATC 57.982 33.333 0.00 0.00 0.00 2.17
2802 4544 9.218359 CACATACTCTTCATCATTTCAAAATCG 57.782 33.333 0.00 0.00 0.00 3.34
2803 4545 7.912250 ACATACTCTTCATCATTTCAAAATCGC 59.088 33.333 0.00 0.00 0.00 4.58
2804 4546 6.258230 ACTCTTCATCATTTCAAAATCGCA 57.742 33.333 0.00 0.00 0.00 5.10
2805 4547 6.680810 ACTCTTCATCATTTCAAAATCGCAA 58.319 32.000 0.00 0.00 0.00 4.85
2806 4548 7.318141 ACTCTTCATCATTTCAAAATCGCAAT 58.682 30.769 0.00 0.00 0.00 3.56
2807 4549 7.816031 ACTCTTCATCATTTCAAAATCGCAATT 59.184 29.630 0.00 0.00 0.00 2.32
2808 4550 8.537049 TCTTCATCATTTCAAAATCGCAATTT 57.463 26.923 0.00 0.00 36.64 1.82
2809 4551 8.991026 TCTTCATCATTTCAAAATCGCAATTTT 58.009 25.926 0.00 0.00 44.12 1.82
2810 4552 9.257865 CTTCATCATTTCAAAATCGCAATTTTC 57.742 29.630 0.00 0.00 41.96 2.29
2811 4553 8.537049 TCATCATTTCAAAATCGCAATTTTCT 57.463 26.923 0.00 0.00 41.96 2.52
2812 4554 8.649841 TCATCATTTCAAAATCGCAATTTTCTC 58.350 29.630 0.00 0.00 41.96 2.87
2813 4555 8.653338 CATCATTTCAAAATCGCAATTTTCTCT 58.347 29.630 0.00 0.00 41.96 3.10
2814 4556 8.592105 TCATTTCAAAATCGCAATTTTCTCTT 57.408 26.923 0.00 0.00 41.96 2.85
2815 4557 9.044150 TCATTTCAAAATCGCAATTTTCTCTTT 57.956 25.926 0.00 0.00 41.96 2.52
2816 4558 9.654417 CATTTCAAAATCGCAATTTTCTCTTTT 57.346 25.926 0.00 0.00 41.96 2.27
2839 4581 6.822667 TTTGTGTTGCTCTCATCATAATGT 57.177 33.333 0.00 0.00 34.32 2.71
2840 4582 7.920160 TTTGTGTTGCTCTCATCATAATGTA 57.080 32.000 0.00 0.00 34.32 2.29
2841 4583 8.510243 TTTGTGTTGCTCTCATCATAATGTAT 57.490 30.769 0.00 0.00 34.32 2.29
2842 4584 9.612066 TTTGTGTTGCTCTCATCATAATGTATA 57.388 29.630 0.00 0.00 34.32 1.47
2843 4585 9.783081 TTGTGTTGCTCTCATCATAATGTATAT 57.217 29.630 0.00 0.00 34.32 0.86
2844 4586 9.428097 TGTGTTGCTCTCATCATAATGTATATC 57.572 33.333 0.00 0.00 34.32 1.63
2845 4587 9.428097 GTGTTGCTCTCATCATAATGTATATCA 57.572 33.333 0.00 0.00 34.32 2.15
2966 4708 5.441718 AATAAAGGACTTCATGGAGCTCA 57.558 39.130 17.19 1.87 0.00 4.26
2968 4710 0.540923 AGGACTTCATGGAGCTCAGC 59.459 55.000 17.19 0.00 0.00 4.26
2983 4725 1.667724 CTCAGCCTCCGTTTAGCATTG 59.332 52.381 0.00 0.00 0.00 2.82
2993 4735 2.518949 GTTTAGCATTGCCGTGATGTG 58.481 47.619 4.70 0.00 0.00 3.21
3008 4750 4.678742 CGTGATGTGTGCTCTATCATACTG 59.321 45.833 8.69 0.00 33.82 2.74
3211 4957 7.282224 GCATATAGTTGGACCATAAGTGACAAA 59.718 37.037 0.00 0.00 0.00 2.83
3212 4958 8.830580 CATATAGTTGGACCATAAGTGACAAAG 58.169 37.037 0.00 0.00 0.00 2.77
3213 4959 5.048846 AGTTGGACCATAAGTGACAAAGT 57.951 39.130 0.00 0.00 0.00 2.66
3215 4961 5.891551 AGTTGGACCATAAGTGACAAAGTTT 59.108 36.000 0.00 0.00 0.00 2.66
3217 4963 5.441500 TGGACCATAAGTGACAAAGTTTGA 58.558 37.500 22.23 0.00 0.00 2.69
3226 4972 5.119694 AGTGACAAAGTTTGAGAGGAGTTC 58.880 41.667 22.23 7.07 0.00 3.01
3233 4979 4.888917 AGTTTGAGAGGAGTTCTGTAAGC 58.111 43.478 0.00 0.00 35.87 3.09
3241 4987 1.207329 GAGTTCTGTAAGCGGGTGGAT 59.793 52.381 0.00 0.00 0.00 3.41
3259 5005 3.118149 TGGATGCATGAGTTGTATGAGCT 60.118 43.478 2.46 0.00 29.94 4.09
3260 5006 3.250280 GGATGCATGAGTTGTATGAGCTG 59.750 47.826 2.46 0.00 29.94 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
369 375 1.735018 CCGCACCATAAATCGTGTTCA 59.265 47.619 0.00 0.00 32.40 3.18
371 377 0.450184 GCCGCACCATAAATCGTGTT 59.550 50.000 0.00 0.00 32.40 3.32
404 410 2.112380 TGTCAGATGGGTCGTACGTA 57.888 50.000 16.05 0.00 0.00 3.57
408 414 1.066430 GGCTTTGTCAGATGGGTCGTA 60.066 52.381 0.00 0.00 0.00 3.43
496 502 3.499737 GCCAACTCCATCACGCGG 61.500 66.667 12.47 0.00 0.00 6.46
520 526 0.250858 CCACTTGTGATGGTCAGGCA 60.251 55.000 1.89 0.00 32.08 4.75
521 527 2.559785 CCACTTGTGATGGTCAGGC 58.440 57.895 1.89 0.00 32.08 4.85
527 533 2.002586 GATCGTGACCACTTGTGATGG 58.997 52.381 1.89 0.00 43.43 3.51
528 534 2.413112 GTGATCGTGACCACTTGTGATG 59.587 50.000 1.89 0.00 0.00 3.07
529 535 2.612972 GGTGATCGTGACCACTTGTGAT 60.613 50.000 1.89 0.00 33.25 3.06
530 536 1.270094 GGTGATCGTGACCACTTGTGA 60.270 52.381 1.89 0.00 33.25 3.58
531 537 1.148310 GGTGATCGTGACCACTTGTG 58.852 55.000 0.00 0.00 33.25 3.33
532 538 1.048601 AGGTGATCGTGACCACTTGT 58.951 50.000 3.73 0.00 35.76 3.16
533 539 1.432514 CAGGTGATCGTGACCACTTG 58.567 55.000 3.73 0.00 35.76 3.16
534 540 0.321671 CCAGGTGATCGTGACCACTT 59.678 55.000 3.73 0.00 35.76 3.16
535 541 1.544825 CCCAGGTGATCGTGACCACT 61.545 60.000 3.73 0.00 35.76 4.00
536 542 1.079127 CCCAGGTGATCGTGACCAC 60.079 63.158 3.73 0.00 35.76 4.16
537 543 2.290287 CCCCAGGTGATCGTGACCA 61.290 63.158 3.73 0.00 35.76 4.02
538 544 1.961180 CTCCCCAGGTGATCGTGACC 61.961 65.000 0.00 0.00 0.00 4.02
539 545 0.970937 TCTCCCCAGGTGATCGTGAC 60.971 60.000 0.00 0.00 0.00 3.67
540 546 0.684479 CTCTCCCCAGGTGATCGTGA 60.684 60.000 0.00 0.00 0.00 4.35
541 547 1.819229 CTCTCCCCAGGTGATCGTG 59.181 63.158 0.00 0.00 0.00 4.35
542 548 2.060980 GCTCTCCCCAGGTGATCGT 61.061 63.158 0.00 0.00 0.00 3.73
543 549 1.617018 TTGCTCTCCCCAGGTGATCG 61.617 60.000 0.00 0.00 0.00 3.69
544 550 0.620556 TTTGCTCTCCCCAGGTGATC 59.379 55.000 0.00 0.00 0.00 2.92
545 551 1.075601 TTTTGCTCTCCCCAGGTGAT 58.924 50.000 0.00 0.00 0.00 3.06
546 552 1.004745 GATTTTGCTCTCCCCAGGTGA 59.995 52.381 0.00 0.00 0.00 4.02
547 553 1.005215 AGATTTTGCTCTCCCCAGGTG 59.995 52.381 0.00 0.00 0.00 4.00
548 554 1.283321 GAGATTTTGCTCTCCCCAGGT 59.717 52.381 0.00 0.00 36.47 4.00
549 555 1.745141 CGAGATTTTGCTCTCCCCAGG 60.745 57.143 0.00 0.00 38.78 4.45
550 556 1.661341 CGAGATTTTGCTCTCCCCAG 58.339 55.000 0.00 0.00 38.78 4.45
551 557 0.392998 GCGAGATTTTGCTCTCCCCA 60.393 55.000 0.00 0.00 38.78 4.96
552 558 0.392998 TGCGAGATTTTGCTCTCCCC 60.393 55.000 0.00 0.00 38.78 4.81
553 559 1.673168 ATGCGAGATTTTGCTCTCCC 58.327 50.000 0.00 0.00 38.78 4.30
554 560 3.462021 AGTATGCGAGATTTTGCTCTCC 58.538 45.455 0.00 0.00 38.78 3.71
555 561 5.980116 TCTAAGTATGCGAGATTTTGCTCTC 59.020 40.000 0.00 0.00 38.64 3.20
556 562 5.907207 TCTAAGTATGCGAGATTTTGCTCT 58.093 37.500 0.00 0.00 34.60 4.09
557 563 6.777526 ATCTAAGTATGCGAGATTTTGCTC 57.222 37.500 0.00 0.00 34.60 4.26
558 564 7.280876 TCAAATCTAAGTATGCGAGATTTTGCT 59.719 33.333 17.77 2.58 43.91 3.91
559 565 7.409697 TCAAATCTAAGTATGCGAGATTTTGC 58.590 34.615 17.77 0.00 43.91 3.68
560 566 9.773328 TTTCAAATCTAAGTATGCGAGATTTTG 57.227 29.630 17.77 14.50 43.91 2.44
563 569 9.941664 CAATTTCAAATCTAAGTATGCGAGATT 57.058 29.630 7.76 7.76 40.77 2.40
564 570 9.330063 TCAATTTCAAATCTAAGTATGCGAGAT 57.670 29.630 0.00 0.00 0.00 2.75
565 571 8.716646 TCAATTTCAAATCTAAGTATGCGAGA 57.283 30.769 0.00 0.00 0.00 4.04
566 572 8.820933 TCTCAATTTCAAATCTAAGTATGCGAG 58.179 33.333 0.00 0.00 0.00 5.03
567 573 8.716646 TCTCAATTTCAAATCTAAGTATGCGA 57.283 30.769 0.00 0.00 0.00 5.10
707 713 0.404040 TGAGTCAATTTTCCCGGCCT 59.596 50.000 0.00 0.00 0.00 5.19
852 871 1.471676 CCTCCTCTCGTTGAAATCGGG 60.472 57.143 0.00 0.00 0.00 5.14
909 936 4.251169 TGGAGCAGGGGAATAATCCTAAT 58.749 43.478 0.00 0.00 45.77 1.73
913 940 1.546548 GCTGGAGCAGGGGAATAATCC 60.547 57.143 0.00 0.00 42.25 3.01
933 960 1.602851 GGATGTGCAGCAAGATAGCAG 59.397 52.381 0.00 0.00 39.21 4.24
944 971 0.109597 GTGCCGAAAAGGATGTGCAG 60.110 55.000 0.00 0.00 45.00 4.41
992 1019 2.393768 GCATCGCCCATATCCGCAG 61.394 63.158 0.00 0.00 0.00 5.18
1324 1401 3.041940 GACTGAACCACCGTGGCG 61.042 66.667 17.99 6.36 42.67 5.69
1593 1670 3.195698 GGATGAGCGCGGTGAACC 61.196 66.667 18.92 13.02 0.00 3.62
1753 1830 0.818445 GCTGCATCAGGGACAGGATG 60.818 60.000 0.00 0.00 42.59 3.51
1777 1854 0.976641 TCCTGAGCACCTTGTCGAAT 59.023 50.000 0.00 0.00 0.00 3.34
1808 1885 0.458370 TGCATCTCCATCACGTCGTG 60.458 55.000 19.38 19.38 34.45 4.35
1871 1948 0.613260 CACTCCCCGGAGATGAACAA 59.387 55.000 17.73 0.00 44.53 2.83
2014 2091 2.081212 GGTGAAGAGCGACGACACG 61.081 63.158 0.00 0.00 33.30 4.49
2188 2265 7.509141 TGATCTCTCAGCTAGTATCTTCTTG 57.491 40.000 0.00 0.00 0.00 3.02
2222 2302 0.034896 ACAGTCCGGTGTTGGTCATC 59.965 55.000 0.00 0.00 0.00 2.92
2264 2344 6.706270 TGTTCTTCTAGTTTCAGCTCGAATTT 59.294 34.615 0.00 0.00 32.32 1.82
2271 2351 4.039730 TGCTCTGTTCTTCTAGTTTCAGCT 59.960 41.667 0.00 0.00 0.00 4.24
2272 2352 4.310769 TGCTCTGTTCTTCTAGTTTCAGC 58.689 43.478 0.00 0.00 0.00 4.26
2273 2353 7.432350 AAATGCTCTGTTCTTCTAGTTTCAG 57.568 36.000 0.00 0.00 0.00 3.02
2274 2354 7.307396 CGAAAATGCTCTGTTCTTCTAGTTTCA 60.307 37.037 0.00 0.00 0.00 2.69
2275 2355 7.012358 CGAAAATGCTCTGTTCTTCTAGTTTC 58.988 38.462 0.00 0.00 0.00 2.78
2280 3994 4.020573 TCCCGAAAATGCTCTGTTCTTCTA 60.021 41.667 0.00 0.00 0.00 2.10
2288 4002 1.089920 CCTGTCCCGAAAATGCTCTG 58.910 55.000 0.00 0.00 0.00 3.35
2290 4004 2.044123 ATCCTGTCCCGAAAATGCTC 57.956 50.000 0.00 0.00 0.00 4.26
2291 4005 2.158755 CCTATCCTGTCCCGAAAATGCT 60.159 50.000 0.00 0.00 0.00 3.79
2292 4006 2.158813 TCCTATCCTGTCCCGAAAATGC 60.159 50.000 0.00 0.00 0.00 3.56
2293 4007 3.134804 AGTCCTATCCTGTCCCGAAAATG 59.865 47.826 0.00 0.00 0.00 2.32
2294 4008 3.385115 AGTCCTATCCTGTCCCGAAAAT 58.615 45.455 0.00 0.00 0.00 1.82
2295 4009 2.829023 AGTCCTATCCTGTCCCGAAAA 58.171 47.619 0.00 0.00 0.00 2.29
2296 4010 2.544844 AGTCCTATCCTGTCCCGAAA 57.455 50.000 0.00 0.00 0.00 3.46
2297 4011 2.385803 GAAGTCCTATCCTGTCCCGAA 58.614 52.381 0.00 0.00 0.00 4.30
2298 4012 1.411216 GGAAGTCCTATCCTGTCCCGA 60.411 57.143 0.00 0.00 33.98 5.14
2299 4013 1.041437 GGAAGTCCTATCCTGTCCCG 58.959 60.000 0.00 0.00 33.98 5.14
2300 4014 2.480642 AGGAAGTCCTATCCTGTCCC 57.519 55.000 0.00 0.00 45.60 4.46
2324 4038 2.800985 CGTCACATCATAGAGTGGGCAG 60.801 54.545 0.00 0.00 36.43 4.85
2398 4140 1.024579 CCCTAATCGCCCACACACAC 61.025 60.000 0.00 0.00 0.00 3.82
2441 4183 0.532115 AAAGCAAGGCCATTTAGCGG 59.468 50.000 5.01 0.00 0.00 5.52
2442 4184 2.223572 CCTAAAGCAAGGCCATTTAGCG 60.224 50.000 5.01 5.05 35.92 4.26
2443 4185 3.443099 CCTAAAGCAAGGCCATTTAGC 57.557 47.619 5.01 0.46 35.92 3.09
2452 4194 5.273668 GCTACAGCAAGCCTAAAGCAAGG 62.274 52.174 0.00 0.00 42.38 3.61
2453 4195 2.159462 GCTACAGCAAGCCTAAAGCAAG 60.159 50.000 0.00 0.00 42.38 4.01
2454 4196 1.812571 GCTACAGCAAGCCTAAAGCAA 59.187 47.619 0.00 0.00 42.38 3.91
2455 4197 1.453155 GCTACAGCAAGCCTAAAGCA 58.547 50.000 0.00 0.00 42.38 3.91
2463 4205 2.626088 CTGAAAAGGCTACAGCAAGC 57.374 50.000 3.24 0.00 44.36 4.01
2468 4210 4.274459 GGTATCATGCTGAAAAGGCTACAG 59.726 45.833 10.50 10.50 35.14 2.74
2469 4211 4.199310 GGTATCATGCTGAAAAGGCTACA 58.801 43.478 0.00 0.00 0.00 2.74
2470 4212 3.248602 CGGTATCATGCTGAAAAGGCTAC 59.751 47.826 0.00 0.00 0.00 3.58
2471 4213 3.118408 ACGGTATCATGCTGAAAAGGCTA 60.118 43.478 0.00 0.00 0.00 3.93
2472 4214 2.292267 CGGTATCATGCTGAAAAGGCT 58.708 47.619 0.00 0.00 0.00 4.58
2473 4215 2.017049 ACGGTATCATGCTGAAAAGGC 58.983 47.619 0.00 0.00 0.00 4.35
2474 4216 2.223340 GCACGGTATCATGCTGAAAAGG 60.223 50.000 0.00 0.00 38.84 3.11
2475 4217 3.056952 GCACGGTATCATGCTGAAAAG 57.943 47.619 0.00 0.00 38.84 2.27
2482 4224 1.581934 TTAGCAGCACGGTATCATGC 58.418 50.000 0.00 0.00 42.39 4.06
2483 4225 3.058708 CCATTTAGCAGCACGGTATCATG 60.059 47.826 0.00 0.00 0.00 3.07
2484 4226 3.141398 CCATTTAGCAGCACGGTATCAT 58.859 45.455 0.00 0.00 0.00 2.45
2485 4227 2.093181 ACCATTTAGCAGCACGGTATCA 60.093 45.455 0.00 0.00 0.00 2.15
2486 4228 2.544267 GACCATTTAGCAGCACGGTATC 59.456 50.000 0.00 0.00 0.00 2.24
2487 4229 2.170607 AGACCATTTAGCAGCACGGTAT 59.829 45.455 0.00 0.00 0.00 2.73
2488 4230 1.553248 AGACCATTTAGCAGCACGGTA 59.447 47.619 0.00 0.00 0.00 4.02
2489 4231 0.324943 AGACCATTTAGCAGCACGGT 59.675 50.000 0.00 0.00 0.00 4.83
2490 4232 1.009829 GAGACCATTTAGCAGCACGG 58.990 55.000 0.00 0.00 0.00 4.94
2491 4233 1.725641 TGAGACCATTTAGCAGCACG 58.274 50.000 0.00 0.00 0.00 5.34
2492 4234 3.012518 ACATGAGACCATTTAGCAGCAC 58.987 45.455 0.00 0.00 0.00 4.40
2493 4235 3.354948 ACATGAGACCATTTAGCAGCA 57.645 42.857 0.00 0.00 0.00 4.41
2494 4236 4.191544 TGTACATGAGACCATTTAGCAGC 58.808 43.478 0.00 0.00 0.00 5.25
2495 4237 6.741992 TTTGTACATGAGACCATTTAGCAG 57.258 37.500 0.00 0.00 0.00 4.24
2496 4238 6.658816 ACATTTGTACATGAGACCATTTAGCA 59.341 34.615 0.00 0.00 0.00 3.49
2497 4239 6.968904 CACATTTGTACATGAGACCATTTAGC 59.031 38.462 0.00 0.00 0.00 3.09
2498 4240 8.044060 ACACATTTGTACATGAGACCATTTAG 57.956 34.615 0.00 0.00 32.60 1.85
2499 4241 7.148490 CGACACATTTGTACATGAGACCATTTA 60.148 37.037 0.00 0.00 35.47 1.40
2500 4242 6.348458 CGACACATTTGTACATGAGACCATTT 60.348 38.462 0.00 0.00 35.47 2.32
2501 4243 5.122239 CGACACATTTGTACATGAGACCATT 59.878 40.000 0.00 0.00 35.47 3.16
2502 4244 4.631377 CGACACATTTGTACATGAGACCAT 59.369 41.667 0.00 0.00 35.47 3.55
2503 4245 3.993736 CGACACATTTGTACATGAGACCA 59.006 43.478 0.00 0.00 35.47 4.02
2504 4246 3.181520 GCGACACATTTGTACATGAGACC 60.182 47.826 0.00 0.00 35.47 3.85
2505 4247 3.679980 AGCGACACATTTGTACATGAGAC 59.320 43.478 0.00 0.00 35.47 3.36
2506 4248 3.925379 AGCGACACATTTGTACATGAGA 58.075 40.909 0.00 0.00 35.47 3.27
2507 4249 5.973651 ATAGCGACACATTTGTACATGAG 57.026 39.130 0.00 0.00 35.47 2.90
2508 4250 7.039270 AGTTATAGCGACACATTTGTACATGA 58.961 34.615 0.00 0.00 35.47 3.07
2509 4251 7.234187 AGTTATAGCGACACATTTGTACATG 57.766 36.000 0.00 0.00 35.47 3.21
2510 4252 8.936070 TTAGTTATAGCGACACATTTGTACAT 57.064 30.769 0.00 0.00 35.47 2.29
2511 4253 8.936070 ATTAGTTATAGCGACACATTTGTACA 57.064 30.769 0.00 0.00 35.47 2.90
2514 4256 8.181573 CCAAATTAGTTATAGCGACACATTTGT 58.818 33.333 0.00 0.00 39.32 2.83
2515 4257 8.394877 TCCAAATTAGTTATAGCGACACATTTG 58.605 33.333 0.00 0.00 33.22 2.32
2516 4258 8.500753 TCCAAATTAGTTATAGCGACACATTT 57.499 30.769 0.00 0.00 0.00 2.32
2517 4259 7.226720 CCTCCAAATTAGTTATAGCGACACATT 59.773 37.037 0.00 0.00 0.00 2.71
2518 4260 6.706270 CCTCCAAATTAGTTATAGCGACACAT 59.294 38.462 0.00 0.00 0.00 3.21
2519 4261 6.046593 CCTCCAAATTAGTTATAGCGACACA 58.953 40.000 0.00 0.00 0.00 3.72
2520 4262 6.047231 ACCTCCAAATTAGTTATAGCGACAC 58.953 40.000 0.00 0.00 0.00 3.67
2521 4263 6.229936 ACCTCCAAATTAGTTATAGCGACA 57.770 37.500 0.00 0.00 0.00 4.35
2522 4264 5.695363 GGACCTCCAAATTAGTTATAGCGAC 59.305 44.000 0.00 0.00 35.64 5.19
2523 4265 5.508489 CGGACCTCCAAATTAGTTATAGCGA 60.508 44.000 0.00 0.00 35.14 4.93
2524 4266 4.684703 CGGACCTCCAAATTAGTTATAGCG 59.315 45.833 0.00 0.00 35.14 4.26
2525 4267 4.451435 GCGGACCTCCAAATTAGTTATAGC 59.549 45.833 0.00 0.00 35.14 2.97
2526 4268 4.995487 GGCGGACCTCCAAATTAGTTATAG 59.005 45.833 0.00 0.00 35.14 1.31
2527 4269 4.501915 CGGCGGACCTCCAAATTAGTTATA 60.502 45.833 0.00 0.00 35.14 0.98
2528 4270 3.743269 CGGCGGACCTCCAAATTAGTTAT 60.743 47.826 0.00 0.00 35.14 1.89
2529 4271 2.419021 CGGCGGACCTCCAAATTAGTTA 60.419 50.000 0.00 0.00 35.14 2.24
2530 4272 1.677820 CGGCGGACCTCCAAATTAGTT 60.678 52.381 0.00 0.00 35.14 2.24
2531 4273 0.107848 CGGCGGACCTCCAAATTAGT 60.108 55.000 0.00 0.00 35.14 2.24
2532 4274 1.436983 GCGGCGGACCTCCAAATTAG 61.437 60.000 9.78 0.00 35.14 1.73
2533 4275 1.450669 GCGGCGGACCTCCAAATTA 60.451 57.895 9.78 0.00 35.14 1.40
2534 4276 1.906105 TAGCGGCGGACCTCCAAATT 61.906 55.000 9.78 0.00 35.14 1.82
2535 4277 2.311688 CTAGCGGCGGACCTCCAAAT 62.312 60.000 9.78 0.00 35.14 2.32
2536 4278 2.998480 TAGCGGCGGACCTCCAAA 60.998 61.111 9.78 0.00 35.14 3.28
2537 4279 3.458163 CTAGCGGCGGACCTCCAA 61.458 66.667 9.78 0.00 35.14 3.53
2538 4280 2.842188 TAACTAGCGGCGGACCTCCA 62.842 60.000 9.78 0.00 35.14 3.86
2539 4281 1.669999 TTAACTAGCGGCGGACCTCC 61.670 60.000 9.78 0.00 0.00 4.30
2540 4282 0.174162 TTTAACTAGCGGCGGACCTC 59.826 55.000 9.78 0.00 0.00 3.85
2541 4283 0.609662 TTTTAACTAGCGGCGGACCT 59.390 50.000 9.78 0.00 0.00 3.85
2542 4284 0.723414 GTTTTAACTAGCGGCGGACC 59.277 55.000 9.78 0.00 0.00 4.46
2543 4285 1.127397 GTGTTTTAACTAGCGGCGGAC 59.873 52.381 9.78 0.00 0.00 4.79
2544 4286 1.001181 AGTGTTTTAACTAGCGGCGGA 59.999 47.619 9.78 0.00 0.00 5.54
2545 4287 1.435577 AGTGTTTTAACTAGCGGCGG 58.564 50.000 9.78 0.00 0.00 6.13
2546 4288 4.092383 ACATTAGTGTTTTAACTAGCGGCG 59.908 41.667 0.51 0.51 34.01 6.46
2547 4289 5.541098 ACATTAGTGTTTTAACTAGCGGC 57.459 39.130 0.00 0.00 34.01 6.53
2548 4290 7.493320 TCCATACATTAGTGTTTTAACTAGCGG 59.507 37.037 0.00 0.00 39.77 5.52
2549 4291 8.415192 TCCATACATTAGTGTTTTAACTAGCG 57.585 34.615 0.00 0.00 39.77 4.26
2550 4292 9.379791 ACTCCATACATTAGTGTTTTAACTAGC 57.620 33.333 0.00 0.00 39.77 3.42
2552 4294 9.661563 CCACTCCATACATTAGTGTTTTAACTA 57.338 33.333 0.00 0.00 39.17 2.24
2553 4295 7.610305 CCCACTCCATACATTAGTGTTTTAACT 59.390 37.037 0.00 0.00 39.17 2.24
2554 4296 7.148137 CCCCACTCCATACATTAGTGTTTTAAC 60.148 40.741 0.00 0.00 39.17 2.01
2555 4297 6.887545 CCCCACTCCATACATTAGTGTTTTAA 59.112 38.462 0.00 0.00 39.17 1.52
2556 4298 6.419791 CCCCACTCCATACATTAGTGTTTTA 58.580 40.000 0.00 0.00 39.17 1.52
2557 4299 5.261216 CCCCACTCCATACATTAGTGTTTT 58.739 41.667 0.00 0.00 39.17 2.43
2558 4300 4.855340 CCCCACTCCATACATTAGTGTTT 58.145 43.478 0.00 0.00 39.17 2.83
2559 4301 3.371595 GCCCCACTCCATACATTAGTGTT 60.372 47.826 0.00 0.00 39.17 3.32
2560 4302 2.172717 GCCCCACTCCATACATTAGTGT 59.827 50.000 0.00 0.00 39.17 3.55
2561 4303 2.172505 TGCCCCACTCCATACATTAGTG 59.827 50.000 0.00 0.00 40.24 2.74
2562 4304 2.487775 TGCCCCACTCCATACATTAGT 58.512 47.619 0.00 0.00 0.00 2.24
2563 4305 3.795688 ATGCCCCACTCCATACATTAG 57.204 47.619 0.00 0.00 0.00 1.73
2564 4306 4.534647 AAATGCCCCACTCCATACATTA 57.465 40.909 0.00 0.00 0.00 1.90
2565 4307 3.403228 AAATGCCCCACTCCATACATT 57.597 42.857 0.00 0.00 0.00 2.71
2566 4308 3.033184 CAAAATGCCCCACTCCATACAT 58.967 45.455 0.00 0.00 0.00 2.29
2567 4309 2.455557 CAAAATGCCCCACTCCATACA 58.544 47.619 0.00 0.00 0.00 2.29
2568 4310 1.756538 CCAAAATGCCCCACTCCATAC 59.243 52.381 0.00 0.00 0.00 2.39
2569 4311 1.643286 TCCAAAATGCCCCACTCCATA 59.357 47.619 0.00 0.00 0.00 2.74
2570 4312 0.413037 TCCAAAATGCCCCACTCCAT 59.587 50.000 0.00 0.00 0.00 3.41
2571 4313 0.251742 CTCCAAAATGCCCCACTCCA 60.252 55.000 0.00 0.00 0.00 3.86
2572 4314 0.972471 CCTCCAAAATGCCCCACTCC 60.972 60.000 0.00 0.00 0.00 3.85
2573 4315 1.607801 GCCTCCAAAATGCCCCACTC 61.608 60.000 0.00 0.00 0.00 3.51
2574 4316 1.610379 GCCTCCAAAATGCCCCACT 60.610 57.895 0.00 0.00 0.00 4.00
2575 4317 2.659063 GGCCTCCAAAATGCCCCAC 61.659 63.158 0.00 0.00 39.30 4.61
2576 4318 2.284552 GGCCTCCAAAATGCCCCA 60.285 61.111 0.00 0.00 39.30 4.96
2577 4319 3.460868 CGGCCTCCAAAATGCCCC 61.461 66.667 0.00 0.00 42.29 5.80
2578 4320 2.362375 TCGGCCTCCAAAATGCCC 60.362 61.111 0.00 0.00 42.29 5.36
2579 4321 3.068729 GCTCGGCCTCCAAAATGCC 62.069 63.158 0.00 0.00 41.85 4.40
2580 4322 1.997928 GAGCTCGGCCTCCAAAATGC 61.998 60.000 0.00 0.00 0.00 3.56
2581 4323 2.101700 GAGCTCGGCCTCCAAAATG 58.898 57.895 0.00 0.00 0.00 2.32
2582 4324 4.645809 GAGCTCGGCCTCCAAAAT 57.354 55.556 0.00 0.00 0.00 1.82
2588 4330 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
2589 4331 3.474570 GTCCATGGAGCTCGGCCT 61.475 66.667 16.81 0.00 0.00 5.19
2590 4332 3.112205 ATGTCCATGGAGCTCGGCC 62.112 63.158 16.81 1.46 0.00 6.13
2591 4333 1.596477 GATGTCCATGGAGCTCGGC 60.596 63.158 16.81 2.30 0.00 5.54
2592 4334 0.395686 ATGATGTCCATGGAGCTCGG 59.604 55.000 16.81 3.50 33.39 4.63
2593 4335 2.251409 AATGATGTCCATGGAGCTCG 57.749 50.000 16.81 0.00 35.24 5.03
2594 4336 6.645790 AAAATAATGATGTCCATGGAGCTC 57.354 37.500 16.81 15.14 35.24 4.09
2595 4337 8.537728 TTAAAAATAATGATGTCCATGGAGCT 57.462 30.769 16.81 4.99 35.24 4.09
2596 4338 9.768662 AATTAAAAATAATGATGTCCATGGAGC 57.231 29.630 16.81 10.93 35.24 4.70
2650 4392 5.124138 TCCGTACAAACATGTGTGACTTTTT 59.876 36.000 23.05 1.34 32.75 1.94
2651 4393 4.636648 TCCGTACAAACATGTGTGACTTTT 59.363 37.500 23.05 2.09 32.75 2.27
2652 4394 4.193090 TCCGTACAAACATGTGTGACTTT 58.807 39.130 23.05 2.48 32.75 2.66
2653 4395 3.799366 TCCGTACAAACATGTGTGACTT 58.201 40.909 23.05 2.87 32.75 3.01
2654 4396 3.462483 TCCGTACAAACATGTGTGACT 57.538 42.857 23.05 3.63 32.75 3.41
2655 4397 3.496884 ACATCCGTACAAACATGTGTGAC 59.503 43.478 23.05 14.19 32.75 3.67
2656 4398 3.734463 ACATCCGTACAAACATGTGTGA 58.266 40.909 23.05 3.64 32.75 3.58
2657 4399 4.953269 GTACATCCGTACAAACATGTGTG 58.047 43.478 14.75 14.75 46.18 3.82
2668 4410 9.338291 CACACATAATATACTGTACATCCGTAC 57.662 37.037 0.00 0.00 46.94 3.67
2669 4411 9.070179 ACACACATAATATACTGTACATCCGTA 57.930 33.333 0.00 0.00 0.00 4.02
2670 4412 7.865889 CACACACATAATATACTGTACATCCGT 59.134 37.037 0.00 0.00 0.00 4.69
2671 4413 7.865889 ACACACACATAATATACTGTACATCCG 59.134 37.037 0.00 0.00 0.00 4.18
2705 4447 9.947669 GCTTGGATCATAATGCATATTATCTTC 57.052 33.333 0.00 0.00 37.38 2.87
2706 4448 9.696572 AGCTTGGATCATAATGCATATTATCTT 57.303 29.630 0.00 0.00 37.38 2.40
2711 4453 9.081204 TGTTTAGCTTGGATCATAATGCATATT 57.919 29.630 0.00 0.00 32.79 1.28
2712 4454 8.640063 TGTTTAGCTTGGATCATAATGCATAT 57.360 30.769 0.00 0.00 32.79 1.78
2713 4455 8.462589 TTGTTTAGCTTGGATCATAATGCATA 57.537 30.769 0.00 0.00 32.79 3.14
2714 4456 6.964807 TGTTTAGCTTGGATCATAATGCAT 57.035 33.333 0.00 0.00 32.79 3.96
2715 4457 6.772360 TTGTTTAGCTTGGATCATAATGCA 57.228 33.333 0.00 0.00 0.00 3.96
2716 4458 8.477984 TTTTTGTTTAGCTTGGATCATAATGC 57.522 30.769 0.00 0.00 0.00 3.56
2758 4500 8.615878 AGTATGTGCACTGTTCACTATAAAAA 57.384 30.769 19.41 0.00 35.58 1.94
2759 4501 8.094548 AGAGTATGTGCACTGTTCACTATAAAA 58.905 33.333 19.41 0.00 35.58 1.52
2760 4502 7.611770 AGAGTATGTGCACTGTTCACTATAAA 58.388 34.615 19.41 0.00 35.58 1.40
2761 4503 7.170393 AGAGTATGTGCACTGTTCACTATAA 57.830 36.000 19.41 0.00 35.58 0.98
2762 4504 6.775594 AGAGTATGTGCACTGTTCACTATA 57.224 37.500 19.41 1.67 35.58 1.31
2763 4505 5.667539 AGAGTATGTGCACTGTTCACTAT 57.332 39.130 19.41 8.08 35.58 2.12
2764 4506 5.468540 AAGAGTATGTGCACTGTTCACTA 57.531 39.130 19.41 0.00 35.58 2.74
2765 4507 4.310769 GAAGAGTATGTGCACTGTTCACT 58.689 43.478 19.41 12.86 44.27 3.41
2766 4508 4.653806 GAAGAGTATGTGCACTGTTCAC 57.346 45.455 19.41 3.55 44.27 3.18
2768 4510 4.931601 TGATGAAGAGTATGTGCACTGTTC 59.068 41.667 19.41 12.05 44.80 3.18
2769 4511 4.898320 TGATGAAGAGTATGTGCACTGTT 58.102 39.130 19.41 1.76 34.94 3.16
2770 4512 4.541973 TGATGAAGAGTATGTGCACTGT 57.458 40.909 19.41 9.43 0.00 3.55
2771 4513 6.093082 TGAAATGATGAAGAGTATGTGCACTG 59.907 38.462 19.41 0.00 0.00 3.66
2772 4514 6.175471 TGAAATGATGAAGAGTATGTGCACT 58.825 36.000 19.41 6.22 0.00 4.40
2773 4515 6.426980 TGAAATGATGAAGAGTATGTGCAC 57.573 37.500 10.75 10.75 0.00 4.57
2774 4516 7.451501 TTTGAAATGATGAAGAGTATGTGCA 57.548 32.000 0.00 0.00 0.00 4.57
2775 4517 8.922058 ATTTTGAAATGATGAAGAGTATGTGC 57.078 30.769 0.00 0.00 0.00 4.57
2776 4518 9.218359 CGATTTTGAAATGATGAAGAGTATGTG 57.782 33.333 0.00 0.00 0.00 3.21
2777 4519 7.912250 GCGATTTTGAAATGATGAAGAGTATGT 59.088 33.333 0.00 0.00 0.00 2.29
2778 4520 7.911727 TGCGATTTTGAAATGATGAAGAGTATG 59.088 33.333 0.00 0.00 0.00 2.39
2779 4521 7.988737 TGCGATTTTGAAATGATGAAGAGTAT 58.011 30.769 0.00 0.00 0.00 2.12
2780 4522 7.376435 TGCGATTTTGAAATGATGAAGAGTA 57.624 32.000 0.00 0.00 0.00 2.59
2781 4523 6.258230 TGCGATTTTGAAATGATGAAGAGT 57.742 33.333 0.00 0.00 0.00 3.24
2782 4524 7.751047 ATTGCGATTTTGAAATGATGAAGAG 57.249 32.000 0.00 0.00 0.00 2.85
2783 4525 8.537049 AAATTGCGATTTTGAAATGATGAAGA 57.463 26.923 6.06 0.00 31.48 2.87
2784 4526 9.257865 GAAAATTGCGATTTTGAAATGATGAAG 57.742 29.630 25.93 0.00 43.61 3.02
2785 4527 8.991026 AGAAAATTGCGATTTTGAAATGATGAA 58.009 25.926 25.93 0.00 43.61 2.57
2786 4528 8.537049 AGAAAATTGCGATTTTGAAATGATGA 57.463 26.923 25.93 0.00 43.61 2.92
2787 4529 8.653338 AGAGAAAATTGCGATTTTGAAATGATG 58.347 29.630 25.93 0.00 43.61 3.07
2788 4530 8.767478 AGAGAAAATTGCGATTTTGAAATGAT 57.233 26.923 25.93 2.78 43.61 2.45
2789 4531 8.592105 AAGAGAAAATTGCGATTTTGAAATGA 57.408 26.923 25.93 0.00 43.61 2.57
2790 4532 9.654417 AAAAGAGAAAATTGCGATTTTGAAATG 57.346 25.926 25.93 0.00 43.61 2.32
2814 4556 7.660112 ACATTATGATGAGAGCAACACAAAAA 58.340 30.769 4.20 0.00 36.73 1.94
2815 4557 7.218228 ACATTATGATGAGAGCAACACAAAA 57.782 32.000 4.20 0.00 36.73 2.44
2816 4558 6.822667 ACATTATGATGAGAGCAACACAAA 57.177 33.333 4.20 0.00 36.73 2.83
2817 4559 9.783081 ATATACATTATGATGAGAGCAACACAA 57.217 29.630 4.20 0.00 36.73 3.33
2818 4560 9.428097 GATATACATTATGATGAGAGCAACACA 57.572 33.333 4.20 0.00 36.73 3.72
2819 4561 9.428097 TGATATACATTATGATGAGAGCAACAC 57.572 33.333 4.20 0.00 36.73 3.32
2863 4605 7.566868 CGTGTTGATACGGATGTACAATACATG 60.567 40.741 0.00 0.00 42.45 3.21
2864 4606 6.419710 CGTGTTGATACGGATGTACAATACAT 59.580 38.462 0.00 1.10 42.30 2.29
2951 4693 0.540923 AGGCTGAGCTCCATGAAGTC 59.459 55.000 12.15 2.53 0.00 3.01
2952 4694 0.540923 GAGGCTGAGCTCCATGAAGT 59.459 55.000 12.15 0.00 0.00 3.01
2955 4697 2.429767 CGGAGGCTGAGCTCCATGA 61.430 63.158 12.15 0.00 39.62 3.07
2960 4702 0.808060 GCTAAACGGAGGCTGAGCTC 60.808 60.000 6.82 6.82 0.00 4.09
2966 4708 1.032114 GGCAATGCTAAACGGAGGCT 61.032 55.000 4.82 0.00 0.00 4.58
2968 4710 1.024579 ACGGCAATGCTAAACGGAGG 61.025 55.000 4.82 0.00 0.00 4.30
2972 4714 1.130373 ACATCACGGCAATGCTAAACG 59.870 47.619 4.82 2.29 0.00 3.60
2983 4725 1.212616 GATAGAGCACACATCACGGC 58.787 55.000 0.00 0.00 0.00 5.68
3059 4801 1.054406 AGATATGTCGGGTGGTGGGG 61.054 60.000 0.00 0.00 0.00 4.96
3211 4957 4.559704 CGCTTACAGAACTCCTCTCAAACT 60.560 45.833 0.00 0.00 29.07 2.66
3212 4958 3.675698 CGCTTACAGAACTCCTCTCAAAC 59.324 47.826 0.00 0.00 29.07 2.93
3213 4959 3.306088 CCGCTTACAGAACTCCTCTCAAA 60.306 47.826 0.00 0.00 29.07 2.69
3215 4961 1.819288 CCGCTTACAGAACTCCTCTCA 59.181 52.381 0.00 0.00 29.07 3.27
3217 4963 1.187087 CCCGCTTACAGAACTCCTCT 58.813 55.000 0.00 0.00 33.23 3.69
3226 4972 0.464373 ATGCATCCACCCGCTTACAG 60.464 55.000 0.00 0.00 0.00 2.74
3233 4979 0.677731 ACAACTCATGCATCCACCCG 60.678 55.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.