Multiple sequence alignment - TraesCS2A01G452200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G452200 chr2A 100.000 4766 0 0 1 4766 701484104 701488869 0.000000e+00 8802
1 TraesCS2A01G452200 chr2B 92.869 3744 198 31 420 4116 670833893 670837614 0.000000e+00 5371
2 TraesCS2A01G452200 chr2B 89.858 1193 64 28 3605 4765 670841311 670842478 0.000000e+00 1480
3 TraesCS2A01G452200 chr2B 86.762 559 58 8 2784 3327 670840100 670840657 4.080000e-170 608
4 TraesCS2A01G452200 chr2B 83.539 243 28 7 2230 2467 670838372 670838607 2.890000e-52 217
5 TraesCS2A01G452200 chr2B 87.135 171 9 6 226 392 670833652 670833813 1.050000e-41 182
6 TraesCS2A01G452200 chr2B 85.841 113 7 4 3 106 670753730 670753842 1.400000e-20 111
7 TraesCS2A01G452200 chr2D 93.541 2756 123 21 171 2919 561838059 561840766 0.000000e+00 4052
8 TraesCS2A01G452200 chr2D 90.717 1228 85 10 2906 4116 561840864 561842079 0.000000e+00 1609
9 TraesCS2A01G452200 chr2D 89.221 1206 54 29 3606 4766 561844502 561845676 0.000000e+00 1437
10 TraesCS2A01G452200 chr2D 89.306 533 43 10 2519 3045 561843695 561844219 0.000000e+00 656
11 TraesCS2A01G452200 chr2D 87.160 257 26 6 2213 2467 561842933 561843184 7.810000e-73 285
12 TraesCS2A01G452200 chr2D 100.000 40 0 0 38 77 561838016 561838055 1.840000e-09 75
13 TraesCS2A01G452200 chr6B 80.683 1522 166 53 981 2455 347224479 347223039 0.000000e+00 1064
14 TraesCS2A01G452200 chr6B 85.462 736 85 14 2482 3208 347222902 347222180 0.000000e+00 747
15 TraesCS2A01G452200 chr6B 82.477 331 36 13 3615 3934 347221791 347221472 2.190000e-68 270
16 TraesCS2A01G452200 chr6D 80.210 1526 168 56 981 2455 262776842 262778284 0.000000e+00 1022
17 TraesCS2A01G452200 chr6D 86.878 663 69 13 2553 3208 262778512 262779163 0.000000e+00 726
18 TraesCS2A01G452200 chr6D 82.282 333 37 11 3612 3934 262779545 262779865 7.860000e-68 268
19 TraesCS2A01G452200 chr6A 81.737 1002 107 39 981 1953 356975974 356976928 0.000000e+00 767
20 TraesCS2A01G452200 chr6A 85.812 733 87 13 2483 3208 356977553 356978275 0.000000e+00 761
21 TraesCS2A01G452200 chr6A 80.556 504 61 16 1981 2455 356976922 356977417 2.110000e-93 353
22 TraesCS2A01G452200 chr6A 82.934 334 37 11 3612 3934 356978659 356978983 2.810000e-72 283
23 TraesCS2A01G452200 chr5D 80.702 399 37 21 421 793 356980699 356980315 1.690000e-69 274
24 TraesCS2A01G452200 chr5D 94.000 150 9 0 814 963 356979861 356979712 1.330000e-55 228
25 TraesCS2A01G452200 chr5D 90.426 94 8 1 964 1056 356979326 356979233 6.480000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G452200 chr2A 701484104 701488869 4765 False 8802.000000 8802 100.000000 1 4766 1 chr2A.!!$F1 4765
1 TraesCS2A01G452200 chr2B 670833652 670842478 8826 False 1571.600000 5371 88.032600 226 4765 5 chr2B.!!$F2 4539
2 TraesCS2A01G452200 chr2D 561838016 561845676 7660 False 1352.333333 4052 91.657500 38 4766 6 chr2D.!!$F1 4728
3 TraesCS2A01G452200 chr6B 347221472 347224479 3007 True 693.666667 1064 82.874000 981 3934 3 chr6B.!!$R1 2953
4 TraesCS2A01G452200 chr6D 262776842 262779865 3023 False 672.000000 1022 83.123333 981 3934 3 chr6D.!!$F1 2953
5 TraesCS2A01G452200 chr6A 356975974 356978983 3009 False 541.000000 767 82.759750 981 3934 4 chr6A.!!$F1 2953
6 TraesCS2A01G452200 chr5D 356979233 356980699 1466 True 208.000000 274 88.376000 421 1056 3 chr5D.!!$R1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 260 0.383231 CCAAATCTGAATGGGCTCGC 59.617 55.000 5.24 0.00 32.87 5.03 F
522 589 0.395312 CGACCCCGGCATAGGTAAAT 59.605 55.000 0.00 0.00 36.17 1.40 F
1226 2146 0.037232 GCGTGTTACCCTCTCTGCTT 60.037 55.000 0.00 0.00 0.00 3.91 F
1479 2412 1.143305 CACATACTATGCTCGCTGCC 58.857 55.000 0.00 0.00 42.00 4.85 F
2058 3009 1.625315 TCACACCATGGAGGAACTGAG 59.375 52.381 21.47 3.68 41.55 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1226 2146 0.399949 ACCACCACCAGAGAACTCCA 60.400 55.000 0.00 0.00 0.00 3.86 R
1601 2538 1.402259 CGCACCACAAACAACTAACCA 59.598 47.619 0.00 0.00 0.00 3.67 R
2058 3009 3.134127 GATGGTTGCCGGTGAGCC 61.134 66.667 1.90 2.03 0.00 4.70 R
3235 4472 1.674322 GTGCACCAGCGGTACCAAT 60.674 57.895 13.54 0.00 46.23 3.16 R
3771 9786 0.101759 TCATTAGTACAGTCGCCCGC 59.898 55.000 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.822652 AATCAGAAGAAAAAGTAAGCAATTGG 57.177 30.769 7.72 0.00 0.00 3.16
29 30 7.581213 TCAGAAGAAAAAGTAAGCAATTGGA 57.419 32.000 7.72 0.00 0.00 3.53
30 31 8.181904 TCAGAAGAAAAAGTAAGCAATTGGAT 57.818 30.769 7.72 0.00 0.00 3.41
31 32 8.084073 TCAGAAGAAAAAGTAAGCAATTGGATG 58.916 33.333 7.72 0.00 0.00 3.51
32 33 8.084073 CAGAAGAAAAAGTAAGCAATTGGATGA 58.916 33.333 7.72 0.00 0.00 2.92
33 34 8.641541 AGAAGAAAAAGTAAGCAATTGGATGAA 58.358 29.630 7.72 0.00 0.00 2.57
34 35 9.260002 GAAGAAAAAGTAAGCAATTGGATGAAA 57.740 29.630 7.72 0.00 0.00 2.69
35 36 9.612066 AAGAAAAAGTAAGCAATTGGATGAAAA 57.388 25.926 7.72 0.00 0.00 2.29
36 37 9.264719 AGAAAAAGTAAGCAATTGGATGAAAAG 57.735 29.630 7.72 0.00 0.00 2.27
77 78 6.702329 ACATGAGGACTAGGAGTTTACTTTG 58.298 40.000 0.00 0.00 0.00 2.77
78 79 5.740290 TGAGGACTAGGAGTTTACTTTGG 57.260 43.478 0.00 0.00 0.00 3.28
79 80 5.399991 TGAGGACTAGGAGTTTACTTTGGA 58.600 41.667 0.00 0.00 0.00 3.53
81 82 6.154706 TGAGGACTAGGAGTTTACTTTGGATC 59.845 42.308 0.00 0.00 0.00 3.36
82 83 5.425862 AGGACTAGGAGTTTACTTTGGATCC 59.574 44.000 4.20 4.20 0.00 3.36
83 84 5.425862 GGACTAGGAGTTTACTTTGGATCCT 59.574 44.000 14.23 0.00 40.26 3.24
84 85 6.070136 GGACTAGGAGTTTACTTTGGATCCTT 60.070 42.308 14.23 0.00 38.17 3.36
85 86 6.712276 ACTAGGAGTTTACTTTGGATCCTTG 58.288 40.000 14.23 5.52 38.17 3.61
86 87 5.843019 AGGAGTTTACTTTGGATCCTTGA 57.157 39.130 14.23 0.00 33.37 3.02
87 88 5.810095 AGGAGTTTACTTTGGATCCTTGAG 58.190 41.667 14.23 10.32 33.37 3.02
88 89 5.548056 AGGAGTTTACTTTGGATCCTTGAGA 59.452 40.000 14.23 0.00 33.37 3.27
89 90 6.216456 AGGAGTTTACTTTGGATCCTTGAGAT 59.784 38.462 14.23 0.00 33.37 2.75
90 91 6.887002 GGAGTTTACTTTGGATCCTTGAGATT 59.113 38.462 14.23 0.00 34.42 2.40
91 92 7.066404 GGAGTTTACTTTGGATCCTTGAGATTC 59.934 40.741 14.23 1.01 34.42 2.52
92 93 7.461749 AGTTTACTTTGGATCCTTGAGATTCA 58.538 34.615 14.23 0.00 38.85 2.57
93 94 8.112183 AGTTTACTTTGGATCCTTGAGATTCAT 58.888 33.333 14.23 0.00 40.37 2.57
94 95 7.870509 TTACTTTGGATCCTTGAGATTCATG 57.129 36.000 14.23 0.00 40.37 3.07
95 96 5.198965 ACTTTGGATCCTTGAGATTCATGG 58.801 41.667 14.23 4.99 40.37 3.66
96 97 3.219176 TGGATCCTTGAGATTCATGGC 57.781 47.619 14.23 0.00 40.40 4.40
97 98 2.158564 TGGATCCTTGAGATTCATGGCC 60.159 50.000 14.23 0.00 40.40 5.36
98 99 2.149578 GATCCTTGAGATTCATGGCCG 58.850 52.381 0.00 0.00 40.40 6.13
99 100 0.911769 TCCTTGAGATTCATGGCCGT 59.088 50.000 0.00 0.00 40.40 5.68
100 101 1.281867 TCCTTGAGATTCATGGCCGTT 59.718 47.619 0.00 0.00 40.40 4.44
101 102 1.672881 CCTTGAGATTCATGGCCGTTC 59.327 52.381 0.00 0.00 35.35 3.95
102 103 2.636830 CTTGAGATTCATGGCCGTTCT 58.363 47.619 0.00 0.00 0.00 3.01
103 104 2.315925 TGAGATTCATGGCCGTTCTC 57.684 50.000 15.56 15.56 34.70 2.87
104 105 1.554617 TGAGATTCATGGCCGTTCTCA 59.445 47.619 19.62 19.62 40.22 3.27
105 106 2.171237 TGAGATTCATGGCCGTTCTCAT 59.829 45.455 19.62 0.00 38.25 2.90
106 107 2.805099 GAGATTCATGGCCGTTCTCATC 59.195 50.000 16.98 7.14 34.36 2.92
107 108 2.171237 AGATTCATGGCCGTTCTCATCA 59.829 45.455 0.00 0.00 0.00 3.07
108 109 2.715749 TTCATGGCCGTTCTCATCAT 57.284 45.000 0.00 0.00 0.00 2.45
109 110 2.245159 TCATGGCCGTTCTCATCATC 57.755 50.000 0.00 0.00 0.00 2.92
110 111 1.764723 TCATGGCCGTTCTCATCATCT 59.235 47.619 0.00 0.00 0.00 2.90
111 112 2.141517 CATGGCCGTTCTCATCATCTC 58.858 52.381 0.00 0.00 0.00 2.75
112 113 1.194218 TGGCCGTTCTCATCATCTCA 58.806 50.000 0.00 0.00 0.00 3.27
113 114 1.764723 TGGCCGTTCTCATCATCTCAT 59.235 47.619 0.00 0.00 0.00 2.90
114 115 2.141517 GGCCGTTCTCATCATCTCATG 58.858 52.381 0.00 0.00 0.00 3.07
115 116 2.224137 GGCCGTTCTCATCATCTCATGA 60.224 50.000 0.00 0.00 44.55 3.07
127 128 5.480642 TCATCTCATGATTCCTAGCCTTC 57.519 43.478 0.00 0.00 33.59 3.46
128 129 4.021632 TCATCTCATGATTCCTAGCCTTCG 60.022 45.833 0.00 0.00 33.59 3.79
129 130 2.036475 TCTCATGATTCCTAGCCTTCGC 59.964 50.000 0.00 0.00 0.00 4.70
130 131 1.070758 TCATGATTCCTAGCCTTCGCC 59.929 52.381 0.00 0.00 34.57 5.54
131 132 1.071385 CATGATTCCTAGCCTTCGCCT 59.929 52.381 0.00 0.00 34.57 5.52
132 133 0.753262 TGATTCCTAGCCTTCGCCTC 59.247 55.000 0.00 0.00 34.57 4.70
133 134 1.044611 GATTCCTAGCCTTCGCCTCT 58.955 55.000 0.00 0.00 34.57 3.69
134 135 0.755686 ATTCCTAGCCTTCGCCTCTG 59.244 55.000 0.00 0.00 34.57 3.35
135 136 1.961180 TTCCTAGCCTTCGCCTCTGC 61.961 60.000 0.00 0.00 34.57 4.26
136 137 2.725312 CCTAGCCTTCGCCTCTGCA 61.725 63.158 0.00 0.00 37.32 4.41
137 138 1.445095 CTAGCCTTCGCCTCTGCAT 59.555 57.895 0.00 0.00 37.32 3.96
138 139 0.879400 CTAGCCTTCGCCTCTGCATG 60.879 60.000 0.00 0.00 37.32 4.06
139 140 2.315781 TAGCCTTCGCCTCTGCATGG 62.316 60.000 0.00 1.87 37.32 3.66
140 141 2.270205 CCTTCGCCTCTGCATGGT 59.730 61.111 7.58 0.00 37.32 3.55
141 142 1.377725 CCTTCGCCTCTGCATGGTT 60.378 57.895 7.58 0.00 37.32 3.67
142 143 0.962356 CCTTCGCCTCTGCATGGTTT 60.962 55.000 7.58 0.00 37.32 3.27
143 144 1.678728 CCTTCGCCTCTGCATGGTTTA 60.679 52.381 7.58 0.00 37.32 2.01
144 145 2.083774 CTTCGCCTCTGCATGGTTTAA 58.916 47.619 7.58 0.69 37.32 1.52
145 146 1.737838 TCGCCTCTGCATGGTTTAAG 58.262 50.000 7.58 0.00 37.32 1.85
146 147 1.277842 TCGCCTCTGCATGGTTTAAGA 59.722 47.619 7.58 0.00 37.32 2.10
147 148 1.398390 CGCCTCTGCATGGTTTAAGAC 59.602 52.381 7.58 0.00 37.32 3.01
148 149 1.398390 GCCTCTGCATGGTTTAAGACG 59.602 52.381 7.58 0.00 37.47 4.18
149 150 1.398390 CCTCTGCATGGTTTAAGACGC 59.602 52.381 0.00 0.00 0.00 5.19
150 151 1.398390 CTCTGCATGGTTTAAGACGCC 59.602 52.381 0.00 0.00 0.00 5.68
151 152 1.164411 CTGCATGGTTTAAGACGCCA 58.836 50.000 0.00 0.00 36.64 5.69
152 153 1.539388 CTGCATGGTTTAAGACGCCAA 59.461 47.619 0.00 0.00 35.74 4.52
153 154 1.957177 TGCATGGTTTAAGACGCCAAA 59.043 42.857 0.00 0.00 35.74 3.28
154 155 2.287909 TGCATGGTTTAAGACGCCAAAC 60.288 45.455 0.00 0.00 35.74 2.93
169 170 0.457035 CAAACCATGGAGATTGGCGG 59.543 55.000 21.47 0.00 37.81 6.13
173 174 1.185315 CCATGGAGATTGGCGGTTTT 58.815 50.000 5.56 0.00 0.00 2.43
250 251 2.312741 AGGAGCCCAATCCAAATCTGAA 59.687 45.455 0.00 0.00 42.26 3.02
256 257 3.036091 CCAATCCAAATCTGAATGGGCT 58.964 45.455 11.53 0.12 37.31 5.19
257 258 3.069158 CCAATCCAAATCTGAATGGGCTC 59.931 47.826 11.53 0.00 37.31 4.70
258 259 2.042686 TCCAAATCTGAATGGGCTCG 57.957 50.000 11.53 0.00 37.31 5.03
259 260 0.383231 CCAAATCTGAATGGGCTCGC 59.617 55.000 5.24 0.00 32.87 5.03
263 266 1.913951 ATCTGAATGGGCTCGCCACA 61.914 55.000 10.51 5.96 37.98 4.17
324 328 3.551890 CACGATGAAAAGTGGACTATCCG 59.448 47.826 0.00 0.00 40.17 4.18
507 574 2.509561 GCCGCTTCTTCCTCGACC 60.510 66.667 0.00 0.00 0.00 4.79
522 589 0.395312 CGACCCCGGCATAGGTAAAT 59.605 55.000 0.00 0.00 36.17 1.40
535 602 0.529992 GGTAAATCCACTCGCTCGGG 60.530 60.000 0.00 0.00 35.97 5.14
558 640 1.078848 CTCCCCCTGCGTTCTCTTG 60.079 63.158 0.00 0.00 0.00 3.02
572 654 3.357079 CTTGTGCTCCGTGTGCCC 61.357 66.667 0.00 0.00 0.00 5.36
738 827 5.237048 CCATTGGGTAAACAAATGACTTGG 58.763 41.667 3.89 0.00 39.56 3.61
762 851 3.067883 GTCGATTAAGTACAGGGTCCCTC 59.932 52.174 7.76 0.00 0.00 4.30
809 923 2.631418 TCTAGAAACGGTCTCTTGCG 57.369 50.000 0.00 0.00 37.84 4.85
836 1359 4.899502 AGTGTTCTCTGTTGGGTGATAAG 58.100 43.478 0.00 0.00 0.00 1.73
852 1375 5.300752 GTGATAAGTCCAGATGTATGGGTG 58.699 45.833 0.00 0.00 41.01 4.61
857 1380 1.138859 TCCAGATGTATGGGTGCTTCG 59.861 52.381 0.00 0.00 41.01 3.79
894 1417 7.692460 ATGGATTATTGATATGTGACGCATT 57.308 32.000 6.84 0.00 38.94 3.56
965 1874 9.950496 ATTAGTGTCAATGTTGAAGTAGATCTT 57.050 29.630 0.00 0.00 39.21 2.40
1062 1973 0.749649 CTGCCGTAGAGAAGCCTGAT 59.250 55.000 0.00 0.00 0.00 2.90
1071 1982 0.540923 AGAAGCCTGATGACTCTGCC 59.459 55.000 0.00 0.00 0.00 4.85
1074 1985 2.914289 CCTGATGACTCTGCCCCC 59.086 66.667 0.00 0.00 0.00 5.40
1140 2060 1.219393 GCCTGCTTCTAAGGACGCT 59.781 57.895 0.00 0.00 37.57 5.07
1226 2146 0.037232 GCGTGTTACCCTCTCTGCTT 60.037 55.000 0.00 0.00 0.00 3.91
1235 2155 1.206849 CCCTCTCTGCTTGGAGTTCTC 59.793 57.143 0.00 0.00 35.11 2.87
1463 2396 5.508489 CCTCTTTTTCGAGGTACTACACACA 60.508 44.000 0.00 0.00 44.49 3.72
1479 2412 1.143305 CACATACTATGCTCGCTGCC 58.857 55.000 0.00 0.00 42.00 4.85
1508 2441 8.752005 TTGCTAGCTTGATGGAAATAGTTTAT 57.248 30.769 17.23 0.00 0.00 1.40
1518 2451 7.494625 TGATGGAAATAGTTTATCTTCGACCAC 59.505 37.037 0.00 0.00 0.00 4.16
1547 2480 5.104735 AGGTTGCCTACTTTGATAGGAGAAG 60.105 44.000 2.94 0.00 44.12 2.85
1601 2538 7.886629 ATCATACTGCATTTAACATGGAACT 57.113 32.000 0.00 0.00 0.00 3.01
1614 2551 5.514274 ACATGGAACTGGTTAGTTGTTTG 57.486 39.130 0.00 0.00 46.79 2.93
1634 2571 2.290367 TGTGGTGCGAAATCAACTTCAG 59.710 45.455 0.00 0.00 0.00 3.02
1640 2577 5.049680 GGTGCGAAATCAACTTCAGAGTTAA 60.050 40.000 0.00 0.00 44.14 2.01
1641 2578 6.348540 GGTGCGAAATCAACTTCAGAGTTAAT 60.349 38.462 0.00 0.00 44.14 1.40
1706 2643 7.624344 GCTTTGTAATCCACACTGTCTGTTATC 60.624 40.741 0.00 0.00 36.69 1.75
1758 2709 3.924686 CCACGTTGTTTTACTATCGCTCT 59.075 43.478 0.00 0.00 0.00 4.09
1961 2912 5.356882 TCAGTTGTTTTACTATGCACTGC 57.643 39.130 0.00 0.00 0.00 4.40
2058 3009 1.625315 TCACACCATGGAGGAACTGAG 59.375 52.381 21.47 3.68 41.55 3.35
2336 3314 7.540400 TGATTTTTGATGCATGTTTACGGTAAG 59.460 33.333 2.46 0.00 0.00 2.34
2562 3677 7.416964 AATGATAGACTGTCAGAGCTAACTT 57.583 36.000 10.88 2.92 0.00 2.66
2725 3841 9.959775 GTCTTTAGAGTTTTGATTACGATGAAG 57.040 33.333 0.00 0.00 0.00 3.02
2768 3884 8.684386 TGTCAAGTTATTAACACCATCTGAAA 57.316 30.769 9.15 0.00 0.00 2.69
2769 3885 8.564574 TGTCAAGTTATTAACACCATCTGAAAC 58.435 33.333 9.15 0.00 0.00 2.78
3068 4298 2.961062 AGCTTGCTTTCACCAGTTGATT 59.039 40.909 0.00 0.00 32.84 2.57
3126 4359 9.232473 GTAATGAAAATCTGGTCTTACCTCTTT 57.768 33.333 0.00 0.00 39.58 2.52
3353 4592 2.090760 TGCATATCGTGTTTGCACCAT 58.909 42.857 0.00 0.00 41.18 3.55
3359 4598 1.959985 TCGTGTTTGCACCATTGGAAT 59.040 42.857 10.37 0.00 42.39 3.01
3474 4726 4.976224 TCATGATTGATCTGCAAACCTG 57.024 40.909 0.00 0.00 40.48 4.00
3488 4740 4.640201 TGCAAACCTGGAATAGATTAGTGC 59.360 41.667 0.00 0.00 0.00 4.40
3509 4761 4.161565 TGCTATCGTCTGGTTGGTATCTTT 59.838 41.667 0.00 0.00 0.00 2.52
3645 4899 1.447838 GATCCGCGCACTGGAGAAA 60.448 57.895 8.75 0.00 39.30 2.52
3723 9738 1.134965 CACGAGATGGAGAACACCCTC 60.135 57.143 0.00 0.00 0.00 4.30
3732 9747 3.644399 GAACACCCTCGAGCCCGAC 62.644 68.421 6.99 0.00 40.30 4.79
3770 9785 3.246021 TGGAAAGGGGAAGACTAGCTAGT 60.246 47.826 26.35 26.35 39.71 2.57
3771 9786 3.133183 GGAAAGGGGAAGACTAGCTAGTG 59.867 52.174 30.70 4.63 36.50 2.74
3774 9793 0.386113 GGGAAGACTAGCTAGTGCGG 59.614 60.000 30.70 2.99 45.42 5.69
3796 9816 4.873827 GGGCGACTGTACTAATGAATTTGA 59.126 41.667 0.00 0.00 0.00 2.69
3862 9889 7.609760 TTTGCACTATTATGTGGTAGTTCTG 57.390 36.000 0.00 0.00 38.31 3.02
3869 9896 8.639761 ACTATTATGTGGTAGTTCTGGTATGAC 58.360 37.037 0.00 0.00 0.00 3.06
3870 9897 6.860790 TTATGTGGTAGTTCTGGTATGACA 57.139 37.500 0.00 0.00 0.00 3.58
3871 9898 5.755409 ATGTGGTAGTTCTGGTATGACAA 57.245 39.130 0.00 0.00 0.00 3.18
3872 9899 5.755409 TGTGGTAGTTCTGGTATGACAAT 57.245 39.130 0.00 0.00 0.00 2.71
3970 10004 2.828520 TGTTTCACCTTGTCTTTTGCCA 59.171 40.909 0.00 0.00 0.00 4.92
4014 10052 3.347958 TGAGCAAAGCCTGTAAAAACG 57.652 42.857 0.00 0.00 0.00 3.60
4023 10061 5.813080 AGCCTGTAAAAACGATTGATACC 57.187 39.130 0.00 0.00 0.00 2.73
4024 10062 5.250200 AGCCTGTAAAAACGATTGATACCA 58.750 37.500 0.00 0.00 0.00 3.25
4044 10082 4.129380 CCATCTCATGTCATTTTCCGCTA 58.871 43.478 0.00 0.00 0.00 4.26
4116 10156 4.698575 TCGTGCCTGCATGTTATAATACA 58.301 39.130 10.87 0.00 34.75 2.29
4117 10157 5.304778 TCGTGCCTGCATGTTATAATACAT 58.695 37.500 10.87 0.00 39.27 2.29
4127 10167 9.847706 TGCATGTTATAATACATTGTTTTTCGT 57.152 25.926 0.00 0.00 36.64 3.85
4174 10228 4.565652 GGCCTGAATTCTAAGTCTCCAACA 60.566 45.833 7.05 0.00 0.00 3.33
4260 10337 5.755861 TGTAATTTTAGCTTTGTTTGGCCAC 59.244 36.000 3.88 0.00 0.00 5.01
4261 10338 2.500509 TTTAGCTTTGTTTGGCCACG 57.499 45.000 3.88 0.00 0.00 4.94
4262 10339 1.681538 TTAGCTTTGTTTGGCCACGA 58.318 45.000 3.88 0.00 0.00 4.35
4264 10341 0.102300 AGCTTTGTTTGGCCACGAAC 59.898 50.000 3.88 9.52 40.70 3.95
4265 10342 0.179124 GCTTTGTTTGGCCACGAACA 60.179 50.000 17.27 17.27 46.61 3.18
4267 10344 3.102985 TGTTTGGCCACGAACACG 58.897 55.556 17.27 0.00 44.15 4.49
4268 10345 1.449778 TGTTTGGCCACGAACACGA 60.450 52.632 17.27 0.00 44.15 4.35
4269 10346 1.278637 GTTTGGCCACGAACACGAG 59.721 57.895 3.88 0.00 40.15 4.18
4270 10347 2.539338 TTTGGCCACGAACACGAGC 61.539 57.895 3.88 0.00 0.00 5.03
4271 10348 3.741830 TTGGCCACGAACACGAGCA 62.742 57.895 3.88 0.00 33.97 4.26
4272 10349 3.712881 GGCCACGAACACGAGCAC 61.713 66.667 0.00 0.00 33.97 4.40
4273 10350 4.059459 GCCACGAACACGAGCACG 62.059 66.667 0.76 0.76 45.75 5.34
4274 10351 2.354188 CCACGAACACGAGCACGA 60.354 61.111 11.40 0.00 42.66 4.35
4275 10352 2.365068 CCACGAACACGAGCACGAG 61.365 63.158 11.40 4.74 42.66 4.18
4276 10353 2.050351 ACGAACACGAGCACGAGG 60.050 61.111 11.40 4.47 42.66 4.63
4277 10354 2.805353 CGAACACGAGCACGAGGG 60.805 66.667 11.40 1.82 42.66 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.264719 CCAATTGCTTACTTTTTCTTCTGATTT 57.735 29.630 0.00 0.00 0.00 2.17
3 4 8.641541 TCCAATTGCTTACTTTTTCTTCTGATT 58.358 29.630 0.00 0.00 0.00 2.57
4 5 8.181904 TCCAATTGCTTACTTTTTCTTCTGAT 57.818 30.769 0.00 0.00 0.00 2.90
5 6 7.581213 TCCAATTGCTTACTTTTTCTTCTGA 57.419 32.000 0.00 0.00 0.00 3.27
6 7 8.084073 TCATCCAATTGCTTACTTTTTCTTCTG 58.916 33.333 0.00 0.00 0.00 3.02
7 8 8.181904 TCATCCAATTGCTTACTTTTTCTTCT 57.818 30.769 0.00 0.00 0.00 2.85
8 9 8.816640 TTCATCCAATTGCTTACTTTTTCTTC 57.183 30.769 0.00 0.00 0.00 2.87
9 10 9.612066 TTTTCATCCAATTGCTTACTTTTTCTT 57.388 25.926 0.00 0.00 0.00 2.52
10 11 9.264719 CTTTTCATCCAATTGCTTACTTTTTCT 57.735 29.630 0.00 0.00 0.00 2.52
11 12 9.260002 TCTTTTCATCCAATTGCTTACTTTTTC 57.740 29.630 0.00 0.00 0.00 2.29
12 13 9.612066 TTCTTTTCATCCAATTGCTTACTTTTT 57.388 25.926 0.00 0.00 0.00 1.94
13 14 9.045223 GTTCTTTTCATCCAATTGCTTACTTTT 57.955 29.630 0.00 0.00 0.00 2.27
14 15 7.382218 CGTTCTTTTCATCCAATTGCTTACTTT 59.618 33.333 0.00 0.00 0.00 2.66
15 16 6.863126 CGTTCTTTTCATCCAATTGCTTACTT 59.137 34.615 0.00 0.00 0.00 2.24
16 17 6.206634 TCGTTCTTTTCATCCAATTGCTTACT 59.793 34.615 0.00 0.00 0.00 2.24
17 18 6.378582 TCGTTCTTTTCATCCAATTGCTTAC 58.621 36.000 0.00 0.00 0.00 2.34
18 19 6.567687 TCGTTCTTTTCATCCAATTGCTTA 57.432 33.333 0.00 0.00 0.00 3.09
19 20 5.452078 TCGTTCTTTTCATCCAATTGCTT 57.548 34.783 0.00 0.00 0.00 3.91
20 21 5.452078 TTCGTTCTTTTCATCCAATTGCT 57.548 34.783 0.00 0.00 0.00 3.91
21 22 5.863397 TCATTCGTTCTTTTCATCCAATTGC 59.137 36.000 0.00 0.00 0.00 3.56
22 23 7.872163 TTCATTCGTTCTTTTCATCCAATTG 57.128 32.000 0.00 0.00 0.00 2.32
23 24 8.885494 TTTTCATTCGTTCTTTTCATCCAATT 57.115 26.923 0.00 0.00 0.00 2.32
24 25 8.359642 TCTTTTCATTCGTTCTTTTCATCCAAT 58.640 29.630 0.00 0.00 0.00 3.16
25 26 7.711846 TCTTTTCATTCGTTCTTTTCATCCAA 58.288 30.769 0.00 0.00 0.00 3.53
26 27 7.228507 TCTCTTTTCATTCGTTCTTTTCATCCA 59.771 33.333 0.00 0.00 0.00 3.41
27 28 7.584987 TCTCTTTTCATTCGTTCTTTTCATCC 58.415 34.615 0.00 0.00 0.00 3.51
28 29 8.896826 GTTCTCTTTTCATTCGTTCTTTTCATC 58.103 33.333 0.00 0.00 0.00 2.92
29 30 8.405531 TGTTCTCTTTTCATTCGTTCTTTTCAT 58.594 29.630 0.00 0.00 0.00 2.57
30 31 7.757526 TGTTCTCTTTTCATTCGTTCTTTTCA 58.242 30.769 0.00 0.00 0.00 2.69
31 32 8.685536 CATGTTCTCTTTTCATTCGTTCTTTTC 58.314 33.333 0.00 0.00 0.00 2.29
32 33 8.405531 TCATGTTCTCTTTTCATTCGTTCTTTT 58.594 29.630 0.00 0.00 0.00 2.27
33 34 7.930217 TCATGTTCTCTTTTCATTCGTTCTTT 58.070 30.769 0.00 0.00 0.00 2.52
34 35 7.308229 CCTCATGTTCTCTTTTCATTCGTTCTT 60.308 37.037 0.00 0.00 0.00 2.52
35 36 6.148480 CCTCATGTTCTCTTTTCATTCGTTCT 59.852 38.462 0.00 0.00 0.00 3.01
36 37 6.147821 TCCTCATGTTCTCTTTTCATTCGTTC 59.852 38.462 0.00 0.00 0.00 3.95
77 78 2.512705 GGCCATGAATCTCAAGGATCC 58.487 52.381 2.48 2.48 37.42 3.36
78 79 2.149578 CGGCCATGAATCTCAAGGATC 58.850 52.381 2.24 0.00 37.42 3.36
79 80 1.492176 ACGGCCATGAATCTCAAGGAT 59.508 47.619 2.24 0.00 37.42 3.24
81 82 1.672881 GAACGGCCATGAATCTCAAGG 59.327 52.381 2.24 0.00 38.22 3.61
82 83 2.611292 GAGAACGGCCATGAATCTCAAG 59.389 50.000 2.24 0.00 37.17 3.02
83 84 2.027285 TGAGAACGGCCATGAATCTCAA 60.027 45.455 16.17 5.12 42.44 3.02
84 85 1.554617 TGAGAACGGCCATGAATCTCA 59.445 47.619 15.10 15.10 42.98 3.27
85 86 2.315925 TGAGAACGGCCATGAATCTC 57.684 50.000 2.24 8.33 37.60 2.75
86 87 2.171237 TGATGAGAACGGCCATGAATCT 59.829 45.455 2.24 0.00 0.00 2.40
87 88 2.564771 TGATGAGAACGGCCATGAATC 58.435 47.619 2.24 0.00 0.00 2.52
88 89 2.715749 TGATGAGAACGGCCATGAAT 57.284 45.000 2.24 0.00 0.00 2.57
89 90 2.171237 AGATGATGAGAACGGCCATGAA 59.829 45.455 2.24 0.00 0.00 2.57
90 91 1.764723 AGATGATGAGAACGGCCATGA 59.235 47.619 2.24 0.00 0.00 3.07
91 92 2.141517 GAGATGATGAGAACGGCCATG 58.858 52.381 2.24 0.00 0.00 3.66
92 93 1.764723 TGAGATGATGAGAACGGCCAT 59.235 47.619 2.24 0.00 0.00 4.40
93 94 1.194218 TGAGATGATGAGAACGGCCA 58.806 50.000 2.24 0.00 0.00 5.36
94 95 2.141517 CATGAGATGATGAGAACGGCC 58.858 52.381 0.00 0.00 0.00 6.13
95 96 3.103447 TCATGAGATGATGAGAACGGC 57.897 47.619 0.00 0.00 33.59 5.68
104 105 8.739342 GCGAAGGCTAGGAATCATGAGATGAT 62.739 46.154 0.09 0.00 43.23 2.45
105 106 4.021632 CGAAGGCTAGGAATCATGAGATGA 60.022 45.833 0.09 0.00 44.55 2.92
106 107 4.244066 CGAAGGCTAGGAATCATGAGATG 58.756 47.826 0.09 0.00 33.90 2.90
107 108 3.306641 GCGAAGGCTAGGAATCATGAGAT 60.307 47.826 0.09 0.00 35.83 2.75
108 109 2.036475 GCGAAGGCTAGGAATCATGAGA 59.964 50.000 0.09 0.00 35.83 3.27
109 110 2.411904 GCGAAGGCTAGGAATCATGAG 58.588 52.381 0.09 0.00 35.83 2.90
110 111 2.533266 GCGAAGGCTAGGAATCATGA 57.467 50.000 0.00 0.00 35.83 3.07
123 124 0.962356 AAACCATGCAGAGGCGAAGG 60.962 55.000 7.84 0.00 45.35 3.46
124 125 1.737838 TAAACCATGCAGAGGCGAAG 58.262 50.000 7.84 0.00 45.35 3.79
125 126 2.083774 CTTAAACCATGCAGAGGCGAA 58.916 47.619 7.84 0.09 45.35 4.70
126 127 1.277842 TCTTAAACCATGCAGAGGCGA 59.722 47.619 7.84 0.00 45.35 5.54
127 128 1.398390 GTCTTAAACCATGCAGAGGCG 59.602 52.381 7.84 0.00 45.35 5.52
128 129 1.398390 CGTCTTAAACCATGCAGAGGC 59.602 52.381 7.84 0.00 41.68 4.70
129 130 1.398390 GCGTCTTAAACCATGCAGAGG 59.602 52.381 6.44 6.44 0.00 3.69
130 131 1.398390 GGCGTCTTAAACCATGCAGAG 59.602 52.381 0.00 0.00 0.00 3.35
131 132 1.271108 TGGCGTCTTAAACCATGCAGA 60.271 47.619 0.00 0.00 0.00 4.26
132 133 1.164411 TGGCGTCTTAAACCATGCAG 58.836 50.000 0.00 0.00 0.00 4.41
133 134 1.610363 TTGGCGTCTTAAACCATGCA 58.390 45.000 0.00 0.00 32.39 3.96
134 135 2.324860 GTTTGGCGTCTTAAACCATGC 58.675 47.619 0.00 0.00 32.39 4.06
139 140 2.554893 TCCATGGTTTGGCGTCTTAAAC 59.445 45.455 12.58 0.00 46.01 2.01
140 141 2.817258 CTCCATGGTTTGGCGTCTTAAA 59.183 45.455 12.58 0.00 46.01 1.52
141 142 2.039216 TCTCCATGGTTTGGCGTCTTAA 59.961 45.455 12.58 0.00 46.01 1.85
142 143 1.626321 TCTCCATGGTTTGGCGTCTTA 59.374 47.619 12.58 0.00 46.01 2.10
143 144 0.400213 TCTCCATGGTTTGGCGTCTT 59.600 50.000 12.58 0.00 46.01 3.01
144 145 0.620556 ATCTCCATGGTTTGGCGTCT 59.379 50.000 12.58 0.00 46.01 4.18
145 146 1.133025 CAATCTCCATGGTTTGGCGTC 59.867 52.381 12.58 0.00 46.01 5.19
146 147 1.176527 CAATCTCCATGGTTTGGCGT 58.823 50.000 12.58 0.00 46.01 5.68
147 148 0.457035 CCAATCTCCATGGTTTGGCG 59.543 55.000 22.19 6.82 46.01 5.69
150 151 0.457035 CCGCCAATCTCCATGGTTTG 59.543 55.000 12.58 13.58 40.23 2.93
151 152 0.039618 ACCGCCAATCTCCATGGTTT 59.960 50.000 12.58 1.50 40.23 3.27
152 153 0.039618 AACCGCCAATCTCCATGGTT 59.960 50.000 12.58 0.00 40.23 3.67
153 154 0.039618 AAACCGCCAATCTCCATGGT 59.960 50.000 12.58 0.00 40.23 3.55
154 155 1.185315 AAAACCGCCAATCTCCATGG 58.815 50.000 4.97 4.97 41.08 3.66
173 174 2.568509 CCCGGGTTCTGGAGTAGTAAAA 59.431 50.000 14.18 0.00 0.00 1.52
188 189 1.744014 CGATCCGAAATACCCGGGT 59.256 57.895 32.66 32.66 46.47 5.28
324 328 1.436336 GATGTTGATGCTGGGCTGC 59.564 57.895 0.00 0.00 0.00 5.25
392 396 1.007238 TGGACAAGGTAGGAGGAGGAG 59.993 57.143 0.00 0.00 0.00 3.69
393 397 1.007238 CTGGACAAGGTAGGAGGAGGA 59.993 57.143 0.00 0.00 0.00 3.71
396 440 1.616187 CGTCTGGACAAGGTAGGAGGA 60.616 57.143 1.63 0.00 0.00 3.71
452 508 2.753029 GGGCAGAGCTGTGGTTCT 59.247 61.111 13.44 0.00 33.28 3.01
501 568 1.111116 TTACCTATGCCGGGGTCGAG 61.111 60.000 2.18 0.00 39.00 4.04
507 574 1.420138 AGTGGATTTACCTATGCCGGG 59.580 52.381 2.18 0.00 39.86 5.73
542 609 1.672356 CACAAGAGAACGCAGGGGG 60.672 63.158 0.00 0.00 0.00 5.40
550 617 0.861837 CACACGGAGCACAAGAGAAC 59.138 55.000 0.00 0.00 0.00 3.01
592 674 2.568090 GGCCATGCCGAACTGTTG 59.432 61.111 0.00 0.00 39.62 3.33
623 705 1.597663 GTGCAGTGCGAAACTTGTACT 59.402 47.619 11.20 0.00 36.83 2.73
738 827 3.429960 GGGACCCTGTACTTAATCGACAC 60.430 52.174 2.09 0.00 0.00 3.67
762 851 1.717194 AAATGCATTGCTTGGCGAAG 58.283 45.000 13.82 3.77 0.00 3.79
809 923 0.040958 CCAACAGAGAACACTTGCGC 60.041 55.000 0.00 0.00 0.00 6.09
836 1359 2.565841 GAAGCACCCATACATCTGGAC 58.434 52.381 0.00 0.00 38.69 4.02
894 1417 1.780806 CACAAATGTTGGCATCGCAA 58.219 45.000 0.00 0.00 33.50 4.85
944 1467 5.412594 GGCAAGATCTACTTCAACATTGACA 59.587 40.000 0.00 0.00 36.83 3.58
947 1470 4.946157 AGGGCAAGATCTACTTCAACATTG 59.054 41.667 0.00 0.00 36.61 2.82
965 1874 1.601759 GCTTGAGCACTTGAGGGCA 60.602 57.895 8.11 0.00 41.59 5.36
979 1888 2.743928 GTGAGACGCTGGGGCTTG 60.744 66.667 0.09 0.00 36.09 4.01
1098 2009 2.747686 GCCGAGTCCTTGAACCCA 59.252 61.111 0.00 0.00 0.00 4.51
1147 2067 2.354203 CCTTCTCCTTGTTCCGGAAGAG 60.354 54.545 19.50 19.81 36.48 2.85
1226 2146 0.399949 ACCACCACCAGAGAACTCCA 60.400 55.000 0.00 0.00 0.00 3.86
1235 2155 1.142060 TGGTCTAACAACCACCACCAG 59.858 52.381 0.00 0.00 44.40 4.00
1518 2451 3.140325 TCAAAGTAGGCAACCTTGAGG 57.860 47.619 0.00 0.00 34.33 3.86
1547 2480 8.066000 GCAACCGTTAATGTTCCTATTATGTAC 58.934 37.037 0.00 0.00 0.00 2.90
1601 2538 1.402259 CGCACCACAAACAACTAACCA 59.598 47.619 0.00 0.00 0.00 3.67
1614 2551 2.548057 TCTGAAGTTGATTTCGCACCAC 59.452 45.455 0.00 0.00 0.00 4.16
1640 2577 7.447545 CACCAGAACAATGATATGGATCAGAAT 59.552 37.037 11.14 0.00 45.29 2.40
1641 2578 6.769341 CACCAGAACAATGATATGGATCAGAA 59.231 38.462 11.14 0.00 45.29 3.02
1965 2916 8.590719 TCACGATAAAAATACACACAGTACAA 57.409 30.769 0.00 0.00 35.05 2.41
1971 2922 8.113675 CGAATCATCACGATAAAAATACACACA 58.886 33.333 0.00 0.00 32.51 3.72
1972 2923 8.114290 ACGAATCATCACGATAAAAATACACAC 58.886 33.333 0.00 0.00 32.51 3.82
2058 3009 3.134127 GATGGTTGCCGGTGAGCC 61.134 66.667 1.90 2.03 0.00 4.70
2336 3314 7.849804 AACTACTGTGTGGACAAATATGATC 57.150 36.000 0.00 0.00 0.00 2.92
3235 4472 1.674322 GTGCACCAGCGGTACCAAT 60.674 57.895 13.54 0.00 46.23 3.16
3303 4541 7.465353 TTTCATGAAAAATGTGCTCCTCATA 57.535 32.000 18.45 0.00 0.00 2.15
3305 4543 5.787953 TTTCATGAAAAATGTGCTCCTCA 57.212 34.783 18.45 0.00 0.00 3.86
3353 4592 4.244066 CGCATTTGAATGTTCCATTCCAA 58.756 39.130 12.92 9.43 38.65 3.53
3359 4598 2.620585 TGACACGCATTTGAATGTTCCA 59.379 40.909 5.68 0.00 38.65 3.53
3375 4614 7.044181 TCTGAGAGAAACATAATGGATGACAC 58.956 38.462 0.00 0.00 39.06 3.67
3474 4726 6.071840 ACCAGACGATAGCACTAATCTATTCC 60.072 42.308 0.00 0.00 42.67 3.01
3488 4740 6.594159 ACAAAAAGATACCAACCAGACGATAG 59.406 38.462 0.00 0.00 46.19 2.08
3509 4761 3.714144 TCTTTTTCCCCAGAACCACAAA 58.286 40.909 0.00 0.00 0.00 2.83
3645 4899 1.302832 CTTGCCTGCCTTCTTCCGT 60.303 57.895 0.00 0.00 0.00 4.69
3723 9738 3.479269 GCAAACTCGTCGGGCTCG 61.479 66.667 0.00 0.00 37.82 5.03
3732 9747 4.470462 CTTTCCAAAGATCAGCAAACTCG 58.530 43.478 0.00 0.00 38.28 4.18
3770 9785 0.179121 CATTAGTACAGTCGCCCGCA 60.179 55.000 0.00 0.00 0.00 5.69
3771 9786 0.101759 TCATTAGTACAGTCGCCCGC 59.898 55.000 0.00 0.00 0.00 6.13
3774 9793 6.562270 CGATCAAATTCATTAGTACAGTCGCC 60.562 42.308 0.00 0.00 0.00 5.54
3785 9805 6.825944 TGGGTTTGACGATCAAATTCATTA 57.174 33.333 13.63 0.70 46.55 1.90
3796 9816 0.457035 GCATGCATGGGTTTGACGAT 59.543 50.000 27.34 0.00 0.00 3.73
3862 9889 5.314923 ACACATGCTTTGATTGTCATACC 57.685 39.130 0.00 0.00 0.00 2.73
3970 10004 7.770433 TCATTTGCTTGCAACTAGTATATCAGT 59.230 33.333 7.60 0.00 0.00 3.41
4014 10052 8.295288 GGAAAATGACATGAGATGGTATCAATC 58.705 37.037 0.00 0.00 33.60 2.67
4023 10061 4.212847 CCTAGCGGAAAATGACATGAGATG 59.787 45.833 0.00 0.00 0.00 2.90
4024 10062 4.101585 TCCTAGCGGAAAATGACATGAGAT 59.898 41.667 0.00 0.00 36.03 2.75
4070 10108 1.745653 GCCACAGCAAATACCTTCTCC 59.254 52.381 0.00 0.00 39.53 3.71
4133 10173 6.252995 TCAGGCCAAGTATTTTAGAAACCAT 58.747 36.000 5.01 0.00 0.00 3.55
4174 10228 8.421249 TTGAAAATCATTCCTACATCCTGTTT 57.579 30.769 0.00 0.00 0.00 2.83
4199 10254 9.225436 CCTAATAGCACTCTCTCTTTTCTTTTT 57.775 33.333 0.00 0.00 0.00 1.94
4200 10255 8.598041 TCCTAATAGCACTCTCTCTTTTCTTTT 58.402 33.333 0.00 0.00 0.00 2.27
4201 10256 8.038351 GTCCTAATAGCACTCTCTCTTTTCTTT 58.962 37.037 0.00 0.00 0.00 2.52
4203 10258 6.665680 TGTCCTAATAGCACTCTCTCTTTTCT 59.334 38.462 0.00 0.00 0.00 2.52
4204 10259 6.754675 GTGTCCTAATAGCACTCTCTCTTTTC 59.245 42.308 0.00 0.00 0.00 2.29
4205 10260 6.351456 GGTGTCCTAATAGCACTCTCTCTTTT 60.351 42.308 0.00 0.00 33.96 2.27
4209 10286 3.954904 TGGTGTCCTAATAGCACTCTCTC 59.045 47.826 0.00 0.00 33.96 3.20
4260 10337 2.805353 CCCTCGTGCTCGTGTTCG 60.805 66.667 8.17 0.00 38.33 3.95
4261 10338 1.733399 GTCCCTCGTGCTCGTGTTC 60.733 63.158 8.17 0.00 38.33 3.18
4262 10339 2.338984 GTCCCTCGTGCTCGTGTT 59.661 61.111 8.17 0.00 38.33 3.32
4272 10349 4.180946 CGCCTGAGACGTCCCTCG 62.181 72.222 13.01 5.46 46.00 4.63
4273 10350 3.827898 CCGCCTGAGACGTCCCTC 61.828 72.222 13.01 4.77 0.00 4.30
4277 10354 3.876589 TTTGCCCGCCTGAGACGTC 62.877 63.158 7.70 7.70 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.