Multiple sequence alignment - TraesCS2A01G452000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G452000 chr2A 100.000 2858 0 0 1 2858 701229346 701232203 0.000000e+00 5278
1 TraesCS2A01G452000 chr2A 88.376 542 57 6 1 540 383628120 383628657 0.000000e+00 647
2 TraesCS2A01G452000 chr2A 98.026 304 6 0 2215 2518 597847813 597848116 1.950000e-146 529
3 TraesCS2A01G452000 chr2A 98.020 303 6 0 2216 2518 747602890 747602588 7.010000e-146 527
4 TraesCS2A01G452000 chr2A 95.062 324 13 3 2221 2542 15845687 15845365 9.140000e-140 507
5 TraesCS2A01G452000 chr2A 91.322 242 15 4 301 539 701187036 701186798 2.750000e-85 326
6 TraesCS2A01G452000 chr2D 92.977 1609 69 19 636 2217 561489410 561491001 0.000000e+00 2305
7 TraesCS2A01G452000 chr2D 93.289 149 10 0 2710 2858 561491261 561491409 1.330000e-53 220
8 TraesCS2A01G452000 chr2B 88.986 1607 79 36 636 2217 669937443 669935910 0.000000e+00 1897
9 TraesCS2A01G452000 chr2B 94.531 128 7 0 2707 2834 669935683 669935556 6.250000e-47 198
10 TraesCS2A01G452000 chr5D 89.319 543 51 5 1 539 54731609 54732148 0.000000e+00 675
11 TraesCS2A01G452000 chr5D 85.294 544 71 7 1 539 77444739 77444200 1.160000e-153 553
12 TraesCS2A01G452000 chr5A 88.355 541 56 7 1 538 657274872 657274336 0.000000e+00 643
13 TraesCS2A01G452000 chr5A 87.638 542 59 8 1 539 575291842 575292378 8.700000e-175 623
14 TraesCS2A01G452000 chr3A 87.661 543 59 8 1 540 66177131 66177668 2.420000e-175 625
15 TraesCS2A01G452000 chr3A 85.610 549 73 5 1 545 709975966 709976512 3.190000e-159 571
16 TraesCS2A01G452000 chr3A 96.519 316 10 1 2215 2529 26583388 26583703 3.260000e-144 521
17 TraesCS2A01G452000 chr3A 96.497 314 9 2 2214 2525 739283195 739283508 4.220000e-143 518
18 TraesCS2A01G452000 chr6A 95.174 373 12 1 1 367 209834563 209834935 4.100000e-163 584
19 TraesCS2A01G452000 chr6A 98.689 305 4 0 2214 2518 65071067 65071371 2.500000e-150 542
20 TraesCS2A01G452000 chr3D 85.687 531 66 6 1 524 574718589 574719116 4.160000e-153 551
21 TraesCS2A01G452000 chr6B 98.355 304 5 0 2215 2518 547713648 547713951 4.190000e-148 534
22 TraesCS2A01G452000 chr7A 98.026 304 6 0 2215 2518 80532804 80533107 1.950000e-146 529
23 TraesCS2A01G452000 chr4A 97.697 304 7 0 2215 2518 731427706 731427403 9.070000e-145 523


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G452000 chr2A 701229346 701232203 2857 False 5278.0 5278 100.0000 1 2858 1 chr2A.!!$F3 2857
1 TraesCS2A01G452000 chr2A 383628120 383628657 537 False 647.0 647 88.3760 1 540 1 chr2A.!!$F1 539
2 TraesCS2A01G452000 chr2D 561489410 561491409 1999 False 1262.5 2305 93.1330 636 2858 2 chr2D.!!$F1 2222
3 TraesCS2A01G452000 chr2B 669935556 669937443 1887 True 1047.5 1897 91.7585 636 2834 2 chr2B.!!$R1 2198
4 TraesCS2A01G452000 chr5D 54731609 54732148 539 False 675.0 675 89.3190 1 539 1 chr5D.!!$F1 538
5 TraesCS2A01G452000 chr5D 77444200 77444739 539 True 553.0 553 85.2940 1 539 1 chr5D.!!$R1 538
6 TraesCS2A01G452000 chr5A 657274336 657274872 536 True 643.0 643 88.3550 1 538 1 chr5A.!!$R1 537
7 TraesCS2A01G452000 chr5A 575291842 575292378 536 False 623.0 623 87.6380 1 539 1 chr5A.!!$F1 538
8 TraesCS2A01G452000 chr3A 66177131 66177668 537 False 625.0 625 87.6610 1 540 1 chr3A.!!$F2 539
9 TraesCS2A01G452000 chr3A 709975966 709976512 546 False 571.0 571 85.6100 1 545 1 chr3A.!!$F3 544
10 TraesCS2A01G452000 chr3D 574718589 574719116 527 False 551.0 551 85.6870 1 524 1 chr3D.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 536 0.195096 AAGTTCAGGGACCTGGGGTA 59.805 55.0 17.75 0.0 43.75 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 2567 0.180642 TCCGCCGAGACACTAGATCT 59.819 55.0 0.0 0.0 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.116531 GGTGCTACGGCCGACAAC 61.117 66.667 35.90 24.80 37.74 3.32
70 71 0.676151 CAGCAAAGCAGAGGAGGACC 60.676 60.000 0.00 0.00 0.00 4.46
76 77 0.472734 AGCAGAGGAGGACCAACAGT 60.473 55.000 0.00 0.00 38.94 3.55
116 118 2.165845 CCGTAATCAGGAGGAAAGACGT 59.834 50.000 0.00 0.00 31.06 4.34
257 259 2.046864 TCGGAGAGGCGAGGACAAG 61.047 63.158 0.00 0.00 0.00 3.16
316 321 0.604578 ATTCAGGTGCCACATTGTGC 59.395 50.000 11.41 7.63 31.34 4.57
332 337 1.153066 TGCTGAAGTGCGGGTTGAA 60.153 52.632 0.00 0.00 35.36 2.69
335 340 1.000274 GCTGAAGTGCGGGTTGAAAAT 60.000 47.619 0.00 0.00 0.00 1.82
364 369 2.521126 GCAGGGGGCTAAGTGTAAAAA 58.479 47.619 0.00 0.00 40.25 1.94
372 377 2.095718 GCTAAGTGTAAAAAGCTGCGCT 60.096 45.455 9.73 0.00 42.56 5.92
373 378 2.405892 AAGTGTAAAAAGCTGCGCTG 57.594 45.000 9.73 10.04 39.62 5.18
411 416 1.589716 GGCATCCAGTTTGCGAGCTT 61.590 55.000 0.00 0.00 41.07 3.74
438 443 7.067494 GTGATTGGTCTAGGACTAAATTTGCAT 59.933 37.037 0.00 0.00 36.67 3.96
439 444 8.271458 TGATTGGTCTAGGACTAAATTTGCATA 58.729 33.333 0.00 0.00 36.67 3.14
447 452 7.902920 AGGACTAAATTTGCATATCCATTGT 57.097 32.000 0.00 0.00 0.00 2.71
455 460 9.941325 AAATTTGCATATCCATTGTAAGTTCAA 57.059 25.926 0.00 0.00 0.00 2.69
528 536 0.195096 AAGTTCAGGGACCTGGGGTA 59.805 55.000 17.75 0.00 43.75 3.69
547 555 7.936496 GGGGTACTATTACCTCTACTATCAC 57.064 44.000 8.99 0.00 44.79 3.06
548 556 7.465116 GGGGTACTATTACCTCTACTATCACA 58.535 42.308 8.99 0.00 44.79 3.58
549 557 7.611079 GGGGTACTATTACCTCTACTATCACAG 59.389 44.444 8.99 0.00 44.79 3.66
550 558 7.121020 GGGTACTATTACCTCTACTATCACAGC 59.879 44.444 8.99 0.00 46.56 4.40
551 559 7.664731 GGTACTATTACCTCTACTATCACAGCA 59.335 40.741 2.07 0.00 44.24 4.41
552 560 9.233649 GTACTATTACCTCTACTATCACAGCAT 57.766 37.037 0.00 0.00 0.00 3.79
553 561 8.116651 ACTATTACCTCTACTATCACAGCATG 57.883 38.462 0.00 0.00 46.00 4.06
568 576 2.907910 GCATGTGGCTTCAGTGTTAG 57.092 50.000 0.00 0.00 40.25 2.34
569 577 1.135575 GCATGTGGCTTCAGTGTTAGC 60.136 52.381 10.33 10.33 40.25 3.09
570 578 2.153645 CATGTGGCTTCAGTGTTAGCA 58.846 47.619 17.51 5.63 39.15 3.49
571 579 2.566833 TGTGGCTTCAGTGTTAGCAT 57.433 45.000 17.51 0.00 39.15 3.79
572 580 2.426522 TGTGGCTTCAGTGTTAGCATC 58.573 47.619 17.51 11.66 39.15 3.91
573 581 2.224499 TGTGGCTTCAGTGTTAGCATCA 60.224 45.455 17.51 13.38 39.15 3.07
574 582 2.417933 GTGGCTTCAGTGTTAGCATCAG 59.582 50.000 17.51 0.00 39.15 2.90
575 583 2.302733 TGGCTTCAGTGTTAGCATCAGA 59.697 45.455 17.51 0.00 39.15 3.27
576 584 3.244526 TGGCTTCAGTGTTAGCATCAGAA 60.245 43.478 17.51 0.00 39.15 3.02
577 585 3.753272 GGCTTCAGTGTTAGCATCAGAAA 59.247 43.478 17.51 0.00 39.15 2.52
578 586 4.216257 GGCTTCAGTGTTAGCATCAGAAAA 59.784 41.667 17.51 0.00 39.15 2.29
579 587 5.278463 GGCTTCAGTGTTAGCATCAGAAAAA 60.278 40.000 17.51 0.00 39.15 1.94
580 588 6.385033 GCTTCAGTGTTAGCATCAGAAAAAT 58.615 36.000 12.92 0.00 37.35 1.82
581 589 6.865205 GCTTCAGTGTTAGCATCAGAAAAATT 59.135 34.615 12.92 0.00 37.35 1.82
582 590 8.023128 GCTTCAGTGTTAGCATCAGAAAAATTA 58.977 33.333 12.92 0.00 37.35 1.40
584 592 9.844790 TTCAGTGTTAGCATCAGAAAAATTATG 57.155 29.630 0.00 0.00 0.00 1.90
585 593 9.013229 TCAGTGTTAGCATCAGAAAAATTATGT 57.987 29.630 0.00 0.00 0.00 2.29
588 596 9.226345 GTGTTAGCATCAGAAAAATTATGTAGC 57.774 33.333 0.00 0.00 0.00 3.58
589 597 9.177608 TGTTAGCATCAGAAAAATTATGTAGCT 57.822 29.630 0.00 0.00 0.00 3.32
590 598 9.657121 GTTAGCATCAGAAAAATTATGTAGCTC 57.343 33.333 0.00 0.00 0.00 4.09
591 599 7.269477 AGCATCAGAAAAATTATGTAGCTCC 57.731 36.000 0.00 0.00 0.00 4.70
592 600 6.830324 AGCATCAGAAAAATTATGTAGCTCCA 59.170 34.615 0.00 0.00 0.00 3.86
593 601 7.340232 AGCATCAGAAAAATTATGTAGCTCCAA 59.660 33.333 0.00 0.00 0.00 3.53
594 602 7.975616 GCATCAGAAAAATTATGTAGCTCCAAA 59.024 33.333 0.00 0.00 0.00 3.28
595 603 9.512435 CATCAGAAAAATTATGTAGCTCCAAAG 57.488 33.333 0.00 0.00 0.00 2.77
605 613 3.329300 GCTCCAAAGCTGTTCTGGA 57.671 52.632 6.85 6.85 45.55 3.86
606 614 1.609208 GCTCCAAAGCTGTTCTGGAA 58.391 50.000 8.09 0.00 45.55 3.53
607 615 1.956477 GCTCCAAAGCTGTTCTGGAAA 59.044 47.619 8.09 0.00 45.55 3.13
608 616 2.362077 GCTCCAAAGCTGTTCTGGAAAA 59.638 45.455 8.09 0.00 45.55 2.29
609 617 3.006217 GCTCCAAAGCTGTTCTGGAAAAT 59.994 43.478 8.09 0.00 45.55 1.82
610 618 4.802999 CTCCAAAGCTGTTCTGGAAAATC 58.197 43.478 8.09 0.00 38.75 2.17
611 619 4.214310 TCCAAAGCTGTTCTGGAAAATCA 58.786 39.130 4.97 0.00 36.30 2.57
612 620 4.648762 TCCAAAGCTGTTCTGGAAAATCAA 59.351 37.500 4.97 0.00 36.30 2.57
613 621 5.128499 TCCAAAGCTGTTCTGGAAAATCAAA 59.872 36.000 4.97 0.00 36.30 2.69
614 622 5.464389 CCAAAGCTGTTCTGGAAAATCAAAG 59.536 40.000 0.00 0.00 31.38 2.77
615 623 6.275335 CAAAGCTGTTCTGGAAAATCAAAGA 58.725 36.000 0.00 0.00 0.00 2.52
616 624 6.661304 AAGCTGTTCTGGAAAATCAAAGAT 57.339 33.333 0.00 0.00 0.00 2.40
617 625 6.264841 AGCTGTTCTGGAAAATCAAAGATC 57.735 37.500 0.00 0.00 0.00 2.75
618 626 6.008960 AGCTGTTCTGGAAAATCAAAGATCT 58.991 36.000 0.00 0.00 0.00 2.75
619 627 6.072064 AGCTGTTCTGGAAAATCAAAGATCTG 60.072 38.462 0.00 0.00 0.00 2.90
620 628 6.017400 TGTTCTGGAAAATCAAAGATCTGC 57.983 37.500 0.00 0.00 0.00 4.26
621 629 5.771666 TGTTCTGGAAAATCAAAGATCTGCT 59.228 36.000 0.00 0.00 0.00 4.24
622 630 6.942005 TGTTCTGGAAAATCAAAGATCTGCTA 59.058 34.615 0.00 0.00 0.00 3.49
623 631 6.992063 TCTGGAAAATCAAAGATCTGCTAC 57.008 37.500 0.00 0.00 0.00 3.58
624 632 6.715280 TCTGGAAAATCAAAGATCTGCTACT 58.285 36.000 0.00 0.00 0.00 2.57
625 633 7.851228 TCTGGAAAATCAAAGATCTGCTACTA 58.149 34.615 0.00 0.00 0.00 1.82
626 634 8.489489 TCTGGAAAATCAAAGATCTGCTACTAT 58.511 33.333 0.00 0.00 0.00 2.12
627 635 9.770097 CTGGAAAATCAAAGATCTGCTACTATA 57.230 33.333 0.00 0.00 0.00 1.31
628 636 9.547753 TGGAAAATCAAAGATCTGCTACTATAC 57.452 33.333 0.00 0.00 0.00 1.47
629 637 9.771534 GGAAAATCAAAGATCTGCTACTATACT 57.228 33.333 0.00 0.00 0.00 2.12
1312 1342 2.514824 GGTTCCAGATCAGGCGGC 60.515 66.667 0.00 0.00 0.00 6.53
1314 1344 4.838152 TTCCAGATCAGGCGGCGC 62.838 66.667 26.17 26.17 0.00 6.53
1908 1948 1.735376 ATCGTCCGTCCCAGATTCCG 61.735 60.000 0.00 0.00 0.00 4.30
1975 2017 5.701224 TGTAAACTGGAGAAGGAATTTGGT 58.299 37.500 0.00 0.00 0.00 3.67
2012 2054 4.408821 TCCGCTGACATGTGGGCC 62.409 66.667 1.15 0.00 38.11 5.80
2074 2117 4.405680 AGCTTCATGTGCCTGTGTATACTA 59.594 41.667 4.17 0.00 0.00 1.82
2075 2118 4.747108 GCTTCATGTGCCTGTGTATACTAG 59.253 45.833 4.17 2.89 0.00 2.57
2076 2119 4.322080 TCATGTGCCTGTGTATACTAGC 57.678 45.455 4.17 2.65 0.00 3.42
2099 2143 4.853196 CAGTTCATTTATTTGCGTGTCAGG 59.147 41.667 0.00 0.00 0.00 3.86
2136 2187 3.878086 TTGTGTTTGAGATTCTGCGAC 57.122 42.857 0.00 0.00 0.00 5.19
2144 2195 2.290916 TGAGATTCTGCGACGGATCTAC 59.709 50.000 0.00 0.00 0.00 2.59
2146 2197 2.688446 AGATTCTGCGACGGATCTACAA 59.312 45.455 0.00 0.00 0.00 2.41
2152 2203 4.328983 TCTGCGACGGATCTACAAATTTTC 59.671 41.667 0.00 0.00 0.00 2.29
2153 2204 3.061563 TGCGACGGATCTACAAATTTTCG 59.938 43.478 0.00 0.00 0.00 3.46
2157 2208 4.504858 ACGGATCTACAAATTTTCGAGCT 58.495 39.130 0.00 0.00 0.00 4.09
2194 2245 0.526954 GAATTGAATGCTGGCTGGCG 60.527 55.000 0.00 0.00 34.52 5.69
2216 2267 5.379732 GTTATGAACGGGGAGAGATCTAG 57.620 47.826 0.00 0.00 0.00 2.43
2217 2268 2.366640 TGAACGGGGAGAGATCTAGG 57.633 55.000 0.00 0.00 0.00 3.02
2218 2269 0.963225 GAACGGGGAGAGATCTAGGC 59.037 60.000 0.00 0.00 0.00 3.93
2219 2270 0.470268 AACGGGGAGAGATCTAGGCC 60.470 60.000 0.00 0.00 0.00 5.19
2220 2271 1.365105 ACGGGGAGAGATCTAGGCCT 61.365 60.000 11.78 11.78 0.00 5.19
2221 2272 0.610785 CGGGGAGAGATCTAGGCCTC 60.611 65.000 9.68 0.00 0.00 4.70
2222 2273 0.783850 GGGGAGAGATCTAGGCCTCT 59.216 60.000 9.68 0.00 42.01 3.69
2223 2274 1.149077 GGGGAGAGATCTAGGCCTCTT 59.851 57.143 9.68 0.00 39.64 2.85
2224 2275 2.427150 GGGGAGAGATCTAGGCCTCTTT 60.427 54.545 9.68 0.00 39.64 2.52
2225 2276 3.313791 GGGAGAGATCTAGGCCTCTTTT 58.686 50.000 9.68 0.00 39.64 2.27
2226 2277 3.070878 GGGAGAGATCTAGGCCTCTTTTG 59.929 52.174 9.68 0.00 39.64 2.44
2227 2278 3.070878 GGAGAGATCTAGGCCTCTTTTGG 59.929 52.174 9.68 0.00 39.64 3.28
2228 2279 3.709141 GAGAGATCTAGGCCTCTTTTGGT 59.291 47.826 9.68 0.00 39.64 3.67
2229 2280 4.107820 AGAGATCTAGGCCTCTTTTGGTT 58.892 43.478 9.68 0.00 36.42 3.67
2230 2281 4.163268 AGAGATCTAGGCCTCTTTTGGTTC 59.837 45.833 9.68 0.00 36.42 3.62
2231 2282 3.846588 AGATCTAGGCCTCTTTTGGTTCA 59.153 43.478 9.68 0.00 0.00 3.18
2232 2283 4.476479 AGATCTAGGCCTCTTTTGGTTCAT 59.524 41.667 9.68 0.00 0.00 2.57
2233 2284 5.667626 AGATCTAGGCCTCTTTTGGTTCATA 59.332 40.000 9.68 0.00 0.00 2.15
2234 2285 5.359194 TCTAGGCCTCTTTTGGTTCATAG 57.641 43.478 9.68 0.00 0.00 2.23
2235 2286 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
2236 2287 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
2237 2288 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
2238 2289 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
2239 2290 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
2240 2291 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
2241 2292 5.163195 GCCTCTTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
2242 2293 6.466470 GCCTCTTTTGGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
2243 2294 7.521669 CCTCTTTTGGTTCATAGGATAGGATT 58.478 38.462 0.00 0.00 28.27 3.01
2244 2295 8.660435 CCTCTTTTGGTTCATAGGATAGGATTA 58.340 37.037 0.00 0.00 28.27 1.75
2248 2299 9.793259 TTTTGGTTCATAGGATAGGATTATCAC 57.207 33.333 0.00 0.00 37.92 3.06
2249 2300 8.504811 TTGGTTCATAGGATAGGATTATCACA 57.495 34.615 0.00 0.00 37.92 3.58
2250 2301 8.138928 TGGTTCATAGGATAGGATTATCACAG 57.861 38.462 0.00 0.00 37.92 3.66
2251 2302 7.180946 TGGTTCATAGGATAGGATTATCACAGG 59.819 40.741 0.00 0.00 37.92 4.00
2252 2303 7.400339 GGTTCATAGGATAGGATTATCACAGGA 59.600 40.741 0.00 0.00 37.92 3.86
2253 2304 8.816894 GTTCATAGGATAGGATTATCACAGGAA 58.183 37.037 0.00 0.00 37.92 3.36
2254 2305 9.566331 TTCATAGGATAGGATTATCACAGGAAT 57.434 33.333 0.00 0.00 37.92 3.01
2257 2308 7.986553 AGGATAGGATTATCACAGGAATAGG 57.013 40.000 0.00 0.00 37.92 2.57
2258 2309 7.723382 AGGATAGGATTATCACAGGAATAGGA 58.277 38.462 0.00 0.00 37.92 2.94
2259 2310 8.186985 AGGATAGGATTATCACAGGAATAGGAA 58.813 37.037 0.00 0.00 37.92 3.36
2260 2311 8.997734 GGATAGGATTATCACAGGAATAGGAAT 58.002 37.037 0.00 0.00 37.92 3.01
2262 2313 9.796242 ATAGGATTATCACAGGAATAGGAATCT 57.204 33.333 0.00 0.00 0.00 2.40
2263 2314 8.517323 AGGATTATCACAGGAATAGGAATCTT 57.483 34.615 0.00 0.00 0.00 2.40
2264 2315 8.381636 AGGATTATCACAGGAATAGGAATCTTG 58.618 37.037 0.00 0.00 0.00 3.02
2265 2316 8.160106 GGATTATCACAGGAATAGGAATCTTGT 58.840 37.037 0.00 0.00 37.58 3.16
2268 2319 6.485830 TCACAGGAATAGGAATCTTGTAGG 57.514 41.667 0.00 0.00 35.23 3.18
2269 2320 6.202331 TCACAGGAATAGGAATCTTGTAGGA 58.798 40.000 0.00 0.00 35.23 2.94
2270 2321 6.672218 TCACAGGAATAGGAATCTTGTAGGAA 59.328 38.462 0.00 0.00 35.23 3.36
2271 2322 7.182026 TCACAGGAATAGGAATCTTGTAGGAAA 59.818 37.037 0.00 0.00 35.23 3.13
2272 2323 7.995488 CACAGGAATAGGAATCTTGTAGGAAAT 59.005 37.037 0.00 0.00 35.23 2.17
2273 2324 7.995488 ACAGGAATAGGAATCTTGTAGGAAATG 59.005 37.037 0.00 0.00 35.62 2.32
2274 2325 8.213679 CAGGAATAGGAATCTTGTAGGAAATGA 58.786 37.037 0.00 0.00 0.00 2.57
2275 2326 8.435982 AGGAATAGGAATCTTGTAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
2276 2327 8.432805 GGAATAGGAATCTTGTAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
2278 2329 9.790344 AATAGGAATCTTGTAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
2279 2330 7.443302 AGGAATCTTGTAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
2280 2331 7.278875 AGGAATCTTGTAGGAAATGAGATGAC 58.721 38.462 0.00 0.00 0.00 3.06
2281 2332 7.050377 GGAATCTTGTAGGAAATGAGATGACA 58.950 38.462 0.00 0.00 0.00 3.58
2282 2333 7.718753 GGAATCTTGTAGGAAATGAGATGACAT 59.281 37.037 0.00 0.00 0.00 3.06
2283 2334 8.447924 AATCTTGTAGGAAATGAGATGACATG 57.552 34.615 0.00 0.00 0.00 3.21
2284 2335 6.950842 TCTTGTAGGAAATGAGATGACATGT 58.049 36.000 0.00 0.00 0.00 3.21
2285 2336 8.078060 TCTTGTAGGAAATGAGATGACATGTA 57.922 34.615 0.00 0.00 0.00 2.29
2286 2337 8.708378 TCTTGTAGGAAATGAGATGACATGTAT 58.292 33.333 0.00 0.00 0.00 2.29
2287 2338 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
2288 2339 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
2289 2340 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
2299 2350 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
2300 2351 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
2301 2352 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
2302 2353 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
2303 2354 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
2304 2355 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
2321 2372 9.703892 CTATGAGTAGGAATAGGAAACAAGATG 57.296 37.037 0.00 0.00 0.00 2.90
2322 2373 7.496346 TGAGTAGGAATAGGAAACAAGATGT 57.504 36.000 0.00 0.00 0.00 3.06
2323 2374 7.556844 TGAGTAGGAATAGGAAACAAGATGTC 58.443 38.462 0.00 0.00 0.00 3.06
2324 2375 7.180229 TGAGTAGGAATAGGAAACAAGATGTCA 59.820 37.037 0.00 0.00 0.00 3.58
2325 2376 8.095452 AGTAGGAATAGGAAACAAGATGTCAT 57.905 34.615 0.00 0.00 0.00 3.06
2326 2377 8.552296 AGTAGGAATAGGAAACAAGATGTCATT 58.448 33.333 0.00 0.00 0.00 2.57
2327 2378 9.178758 GTAGGAATAGGAAACAAGATGTCATTT 57.821 33.333 0.00 0.00 0.00 2.32
2328 2379 8.059798 AGGAATAGGAAACAAGATGTCATTTG 57.940 34.615 0.00 0.00 0.00 2.32
2329 2380 7.123247 AGGAATAGGAAACAAGATGTCATTTGG 59.877 37.037 10.50 0.00 0.00 3.28
2330 2381 7.093771 GGAATAGGAAACAAGATGTCATTTGGT 60.094 37.037 10.50 3.75 0.00 3.67
2331 2382 7.781324 ATAGGAAACAAGATGTCATTTGGTT 57.219 32.000 9.41 9.41 36.95 3.67
2332 2383 5.846203 AGGAAACAAGATGTCATTTGGTTG 58.154 37.500 12.70 6.32 34.55 3.77
2333 2384 5.598005 AGGAAACAAGATGTCATTTGGTTGA 59.402 36.000 12.70 0.00 34.55 3.18
2334 2385 5.691754 GGAAACAAGATGTCATTTGGTTGAC 59.308 40.000 12.70 0.00 45.05 3.18
2350 2401 5.984233 GGTTGACACCAAAGGAATTTTTC 57.016 39.130 0.00 0.00 43.61 2.29
2351 2402 4.814234 GGTTGACACCAAAGGAATTTTTCC 59.186 41.667 0.00 0.00 45.80 3.13
2352 2403 5.627968 GGTTGACACCAAAGGAATTTTTCCA 60.628 40.000 8.87 0.00 46.88 3.53
2353 2404 6.911529 GGTTGACACCAAAGGAATTTTTCCAT 60.912 38.462 8.87 0.00 46.88 3.41
2354 2405 8.334633 GGTTGACACCAAAGGAATTTTTCCATT 61.335 37.037 8.87 0.31 46.88 3.16
2365 2416 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
2366 2417 7.163001 GAATTTTTCCATTGAGTCTAGGCTT 57.837 36.000 0.00 0.00 0.00 4.35
2367 2418 7.544804 AATTTTTCCATTGAGTCTAGGCTTT 57.455 32.000 0.00 0.00 0.00 3.51
2368 2419 6.976934 TTTTTCCATTGAGTCTAGGCTTTT 57.023 33.333 0.00 0.00 0.00 2.27
2369 2420 6.976934 TTTTCCATTGAGTCTAGGCTTTTT 57.023 33.333 0.00 0.00 0.00 1.94
2399 2450 8.766994 TTTTCCTATGAAATTTGGAGGATAGG 57.233 34.615 11.32 10.00 40.08 2.57
2400 2451 7.705912 TTCCTATGAAATTTGGAGGATAGGA 57.294 36.000 11.32 11.55 39.66 2.94
2401 2452 7.705912 TCCTATGAAATTTGGAGGATAGGAA 57.294 36.000 0.00 0.00 38.86 3.36
2402 2453 7.518188 TCCTATGAAATTTGGAGGATAGGAAC 58.482 38.462 0.00 0.00 38.86 3.62
2403 2454 6.717084 CCTATGAAATTTGGAGGATAGGAACC 59.283 42.308 0.00 0.00 36.16 3.62
2404 2455 5.528600 TGAAATTTGGAGGATAGGAACCA 57.471 39.130 0.00 0.00 0.00 3.67
2405 2456 5.898120 TGAAATTTGGAGGATAGGAACCAA 58.102 37.500 0.00 0.00 40.05 3.67
2406 2457 6.502138 TGAAATTTGGAGGATAGGAACCAAT 58.498 36.000 0.00 0.00 41.14 3.16
2407 2458 6.607198 TGAAATTTGGAGGATAGGAACCAATC 59.393 38.462 0.00 0.00 41.14 2.67
2437 2488 9.392506 TGTAGGAATAGGAATCCATTTCTATGA 57.607 33.333 0.61 0.00 37.55 2.15
2440 2491 8.166726 AGGAATAGGAATCCATTTCTATGAACC 58.833 37.037 0.61 6.01 37.55 3.62
2441 2492 7.944554 GGAATAGGAATCCATTTCTATGAACCA 59.055 37.037 0.61 0.00 37.55 3.67
2442 2493 9.354673 GAATAGGAATCCATTTCTATGAACCAA 57.645 33.333 0.61 0.00 37.55 3.67
2443 2494 9.713684 AATAGGAATCCATTTCTATGAACCAAA 57.286 29.630 0.61 0.00 37.55 3.28
2444 2495 7.651027 AGGAATCCATTTCTATGAACCAAAG 57.349 36.000 0.61 0.00 34.56 2.77
2445 2496 6.608808 AGGAATCCATTTCTATGAACCAAAGG 59.391 38.462 0.61 0.00 34.56 3.11
2446 2497 6.183360 GGAATCCATTTCTATGAACCAAAGGG 60.183 42.308 0.00 0.00 35.88 3.95
2447 2498 4.023291 TCCATTTCTATGAACCAAAGGGC 58.977 43.478 0.00 0.00 33.50 5.19
2448 2499 4.026052 CCATTTCTATGAACCAAAGGGCT 58.974 43.478 0.00 0.00 33.50 5.19
2449 2500 4.098501 CCATTTCTATGAACCAAAGGGCTC 59.901 45.833 0.00 0.00 33.50 4.70
2450 2501 4.657814 TTTCTATGAACCAAAGGGCTCT 57.342 40.909 0.00 0.00 37.90 4.09
2451 2502 5.772393 TTTCTATGAACCAAAGGGCTCTA 57.228 39.130 0.00 0.00 37.90 2.43
2452 2503 5.772393 TTCTATGAACCAAAGGGCTCTAA 57.228 39.130 0.00 0.00 37.90 2.10
2453 2504 5.772393 TCTATGAACCAAAGGGCTCTAAA 57.228 39.130 0.00 0.00 37.90 1.85
2454 2505 5.745227 TCTATGAACCAAAGGGCTCTAAAG 58.255 41.667 0.00 0.00 37.90 1.85
2455 2506 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
2456 2507 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
2457 2508 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
2458 2509 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
2459 2510 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
2460 2511 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
2504 2555 9.853177 TCCTTTAGAATTCCTATGAAATTCCTC 57.147 33.333 0.65 0.00 33.32 3.71
2505 2556 9.859152 CCTTTAGAATTCCTATGAAATTCCTCT 57.141 33.333 0.65 0.00 33.32 3.69
2510 2561 9.634021 AGAATTCCTATGAAATTCCTCTAAACC 57.366 33.333 0.65 0.00 33.32 3.27
2511 2562 9.408648 GAATTCCTATGAAATTCCTCTAAACCA 57.591 33.333 0.00 0.00 33.32 3.67
2512 2563 9.768215 AATTCCTATGAAATTCCTCTAAACCAA 57.232 29.630 0.00 0.00 33.32 3.67
2513 2564 9.768215 ATTCCTATGAAATTCCTCTAAACCAAA 57.232 29.630 0.00 0.00 33.32 3.28
2514 2565 8.807948 TCCTATGAAATTCCTCTAAACCAAAG 57.192 34.615 0.00 0.00 0.00 2.77
2515 2566 7.834181 TCCTATGAAATTCCTCTAAACCAAAGG 59.166 37.037 0.00 0.00 0.00 3.11
2516 2567 7.834181 CCTATGAAATTCCTCTAAACCAAAGGA 59.166 37.037 0.00 0.00 37.42 3.36
2532 2583 1.975660 AGGAGATCTAGTGTCTCGGC 58.024 55.000 16.32 8.10 42.36 5.54
2564 2615 2.824347 CGGTCACGTTCGTTTCTTAC 57.176 50.000 0.00 0.00 34.81 2.34
2565 2616 1.121257 CGGTCACGTTCGTTTCTTACG 59.879 52.381 0.00 0.00 42.68 3.18
2579 2632 0.362179 CTTACGTGCACATGTCGTCG 59.638 55.000 18.64 11.74 38.69 5.12
2609 2662 1.732259 CATGGTCTACGGAGTTGTTGC 59.268 52.381 0.00 0.00 37.78 4.17
2611 2664 1.270094 TGGTCTACGGAGTTGTTGCTG 60.270 52.381 0.00 0.00 37.78 4.41
2636 2711 2.258726 GGTGTCTGTTGGTTCCGGC 61.259 63.158 0.00 0.00 0.00 6.13
2668 2746 1.004927 GTTACTGCAATCGTCGATGCC 60.005 52.381 19.81 11.08 0.00 4.40
2689 2767 6.983776 GCCATTGGGTTGATGTTTCCATCG 62.984 50.000 4.53 0.00 42.63 3.84
2698 2776 3.726607 GATGTTTCCATCGCTCTGATCT 58.273 45.455 0.00 0.00 38.28 2.75
2700 2778 4.736126 TGTTTCCATCGCTCTGATCTTA 57.264 40.909 0.00 0.00 34.13 2.10
2702 2780 5.674525 TGTTTCCATCGCTCTGATCTTATT 58.325 37.500 0.00 0.00 34.13 1.40
2704 2782 6.037500 TGTTTCCATCGCTCTGATCTTATTTG 59.962 38.462 0.00 0.00 34.13 2.32
2705 2783 4.635223 TCCATCGCTCTGATCTTATTTGG 58.365 43.478 0.00 0.00 34.13 3.28
2707 2785 3.827008 TCGCTCTGATCTTATTTGGCT 57.173 42.857 0.00 0.00 0.00 4.75
2759 2886 2.030946 CCGATCGCTTCTGGAACAAATC 59.969 50.000 10.32 0.00 38.70 2.17
2763 2890 1.464687 CGCTTCTGGAACAAATCAGCG 60.465 52.381 0.00 0.00 40.89 5.18
2794 2921 2.476051 GTGACATCGCAACCGCAG 59.524 61.111 0.00 0.00 38.40 5.18
2848 2975 3.108289 CAGTGCAGAGACGGTGCG 61.108 66.667 0.00 0.00 44.35 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.359107 TGCTTTGCTGCTCCTCCG 60.359 61.111 0.00 0.00 0.00 4.63
51 52 0.676151 GGTCCTCCTCTGCTTTGCTG 60.676 60.000 0.00 0.00 0.00 4.41
70 71 3.185188 CGTGTTCTTCATCTCCACTGTTG 59.815 47.826 0.00 0.00 0.00 3.33
76 77 2.609491 CGGTTCGTGTTCTTCATCTCCA 60.609 50.000 0.00 0.00 0.00 3.86
89 91 1.475280 TCCTCCTGATTACGGTTCGTG 59.525 52.381 3.03 0.00 41.39 4.35
116 118 0.739462 CATCAAGTTAGGCCGCACGA 60.739 55.000 0.00 0.00 0.00 4.35
257 259 4.200092 GGTCAATAACTCATGTTCCTCCC 58.800 47.826 0.00 0.00 37.59 4.30
316 321 2.664916 CATTTTCAACCCGCACTTCAG 58.335 47.619 0.00 0.00 0.00 3.02
332 337 0.906282 CCCCCTGCCTTCTTGCATTT 60.906 55.000 0.00 0.00 41.16 2.32
335 340 4.684134 GCCCCCTGCCTTCTTGCA 62.684 66.667 0.00 0.00 39.37 4.08
403 408 0.035317 AGACCAATCACAAGCTCGCA 59.965 50.000 0.00 0.00 0.00 5.10
411 416 6.374333 GCAAATTTAGTCCTAGACCAATCACA 59.626 38.462 0.00 0.00 32.18 3.58
438 443 9.699410 ATTTCATCCTTGAACTTACAATGGATA 57.301 29.630 0.00 0.00 41.50 2.59
439 444 8.599624 ATTTCATCCTTGAACTTACAATGGAT 57.400 30.769 0.00 0.00 41.50 3.41
447 452 9.466497 AAGCTGATTATTTCATCCTTGAACTTA 57.534 29.630 0.00 0.00 41.50 2.24
455 460 8.358582 AGTTGAAAAGCTGATTATTTCATCCT 57.641 30.769 10.49 7.62 41.26 3.24
485 491 4.836825 CATGTCAGGTGATGGTTTAGTCT 58.163 43.478 0.00 0.00 0.00 3.24
528 536 7.726291 ACATGCTGTGATAGTAGAGGTAATAGT 59.274 37.037 0.00 0.00 0.00 2.12
549 557 1.135575 GCTAACACTGAAGCCACATGC 60.136 52.381 0.00 0.00 41.71 4.06
550 558 2.153645 TGCTAACACTGAAGCCACATG 58.846 47.619 0.00 0.00 37.97 3.21
551 559 2.566833 TGCTAACACTGAAGCCACAT 57.433 45.000 5.92 0.00 37.97 3.21
552 560 2.224499 TGATGCTAACACTGAAGCCACA 60.224 45.455 5.92 4.18 37.97 4.17
553 561 2.417933 CTGATGCTAACACTGAAGCCAC 59.582 50.000 5.92 2.30 37.97 5.01
554 562 2.302733 TCTGATGCTAACACTGAAGCCA 59.697 45.455 5.92 0.00 37.97 4.75
555 563 2.977914 TCTGATGCTAACACTGAAGCC 58.022 47.619 5.92 0.00 37.97 4.35
556 564 5.362556 TTTTCTGATGCTAACACTGAAGC 57.637 39.130 2.36 2.36 39.25 3.86
558 566 9.844790 CATAATTTTTCTGATGCTAACACTGAA 57.155 29.630 0.00 0.00 0.00 3.02
559 567 9.013229 ACATAATTTTTCTGATGCTAACACTGA 57.987 29.630 0.00 0.00 0.00 3.41
562 570 9.226345 GCTACATAATTTTTCTGATGCTAACAC 57.774 33.333 0.00 0.00 0.00 3.32
563 571 9.177608 AGCTACATAATTTTTCTGATGCTAACA 57.822 29.630 0.00 0.00 0.00 2.41
564 572 9.657121 GAGCTACATAATTTTTCTGATGCTAAC 57.343 33.333 0.00 0.00 0.00 2.34
565 573 8.840321 GGAGCTACATAATTTTTCTGATGCTAA 58.160 33.333 0.00 0.00 0.00 3.09
566 574 7.992608 TGGAGCTACATAATTTTTCTGATGCTA 59.007 33.333 0.00 0.00 0.00 3.49
567 575 6.830324 TGGAGCTACATAATTTTTCTGATGCT 59.170 34.615 0.00 0.00 0.00 3.79
568 576 7.031226 TGGAGCTACATAATTTTTCTGATGC 57.969 36.000 0.00 0.00 0.00 3.91
569 577 9.512435 CTTTGGAGCTACATAATTTTTCTGATG 57.488 33.333 0.00 0.00 0.00 3.07
570 578 8.193438 GCTTTGGAGCTACATAATTTTTCTGAT 58.807 33.333 0.00 0.00 45.65 2.90
571 579 7.538575 GCTTTGGAGCTACATAATTTTTCTGA 58.461 34.615 0.00 0.00 45.65 3.27
572 580 7.746526 GCTTTGGAGCTACATAATTTTTCTG 57.253 36.000 0.00 0.00 45.65 3.02
588 596 4.279169 TGATTTTCCAGAACAGCTTTGGAG 59.721 41.667 6.23 0.00 41.68 3.86
589 597 4.214310 TGATTTTCCAGAACAGCTTTGGA 58.786 39.130 2.69 2.69 39.16 3.53
590 598 4.589216 TGATTTTCCAGAACAGCTTTGG 57.411 40.909 0.00 0.00 0.00 3.28
591 599 6.275335 TCTTTGATTTTCCAGAACAGCTTTG 58.725 36.000 0.00 0.00 0.00 2.77
592 600 6.469782 TCTTTGATTTTCCAGAACAGCTTT 57.530 33.333 0.00 0.00 0.00 3.51
593 601 6.492772 AGATCTTTGATTTTCCAGAACAGCTT 59.507 34.615 0.00 0.00 0.00 3.74
594 602 6.008960 AGATCTTTGATTTTCCAGAACAGCT 58.991 36.000 0.00 0.00 0.00 4.24
595 603 6.091437 CAGATCTTTGATTTTCCAGAACAGC 58.909 40.000 0.00 0.00 0.00 4.40
596 604 6.072064 AGCAGATCTTTGATTTTCCAGAACAG 60.072 38.462 0.00 0.00 0.00 3.16
597 605 5.771666 AGCAGATCTTTGATTTTCCAGAACA 59.228 36.000 0.00 0.00 0.00 3.18
598 606 6.264841 AGCAGATCTTTGATTTTCCAGAAC 57.735 37.500 0.00 0.00 0.00 3.01
599 607 7.170965 AGTAGCAGATCTTTGATTTTCCAGAA 58.829 34.615 0.00 0.00 0.00 3.02
600 608 6.715280 AGTAGCAGATCTTTGATTTTCCAGA 58.285 36.000 0.00 0.00 0.00 3.86
601 609 6.998968 AGTAGCAGATCTTTGATTTTCCAG 57.001 37.500 0.00 0.00 0.00 3.86
602 610 9.547753 GTATAGTAGCAGATCTTTGATTTTCCA 57.452 33.333 0.00 0.00 0.00 3.53
603 611 9.771534 AGTATAGTAGCAGATCTTTGATTTTCC 57.228 33.333 0.00 0.00 0.00 3.13
614 622 9.976255 CGTAACTAATCAGTATAGTAGCAGATC 57.024 37.037 0.00 0.00 33.36 2.75
615 623 9.504708 ACGTAACTAATCAGTATAGTAGCAGAT 57.495 33.333 0.00 0.00 33.36 2.90
616 624 8.899427 ACGTAACTAATCAGTATAGTAGCAGA 57.101 34.615 0.00 0.00 33.36 4.26
625 633 9.443283 CGCTAAAGTAACGTAACTAATCAGTAT 57.557 33.333 0.00 0.00 33.48 2.12
626 634 7.910162 CCGCTAAAGTAACGTAACTAATCAGTA 59.090 37.037 0.00 0.00 33.48 2.74
627 635 6.749118 CCGCTAAAGTAACGTAACTAATCAGT 59.251 38.462 0.00 0.00 36.19 3.41
628 636 6.749118 ACCGCTAAAGTAACGTAACTAATCAG 59.251 38.462 0.00 0.00 0.00 2.90
629 637 6.620678 ACCGCTAAAGTAACGTAACTAATCA 58.379 36.000 0.00 0.00 0.00 2.57
630 638 8.122952 TCTACCGCTAAAGTAACGTAACTAATC 58.877 37.037 0.00 0.00 0.00 1.75
631 639 7.910683 GTCTACCGCTAAAGTAACGTAACTAAT 59.089 37.037 0.00 0.00 0.00 1.73
632 640 7.241376 GTCTACCGCTAAAGTAACGTAACTAA 58.759 38.462 0.00 0.00 0.00 2.24
633 641 6.455113 CGTCTACCGCTAAAGTAACGTAACTA 60.455 42.308 0.00 0.00 0.00 2.24
634 642 5.631992 GTCTACCGCTAAAGTAACGTAACT 58.368 41.667 0.00 0.00 0.00 2.24
895 921 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
896 922 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
897 923 4.179599 GGGGAGGGAGGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
926 953 4.595538 GTGGTGACCGTGGCGTGA 62.596 66.667 0.00 0.00 0.00 4.35
960 987 3.613877 TTGCGCATTGCCGTCCCTA 62.614 57.895 12.75 0.00 45.60 3.53
1134 1164 3.839432 CTCGGGAAGAGCGGGACC 61.839 72.222 0.00 0.00 40.54 4.46
1158 1188 3.537874 GGGCAGACGTAGGGCGAT 61.538 66.667 6.44 0.00 44.77 4.58
1365 1395 2.509336 GATCCGTCGTGCTGGTGG 60.509 66.667 0.00 0.00 0.00 4.61
1520 1550 4.812476 CCCGGTTGCTGATCGCGA 62.812 66.667 13.09 13.09 43.27 5.87
1548 1578 3.324099 CTCGTACGAGCACCGCACT 62.324 63.158 30.44 0.00 43.32 4.40
1560 1590 1.716826 CCTCCTCGCTGTCCTCGTAC 61.717 65.000 0.00 0.00 0.00 3.67
1674 1704 2.476051 CTGATGCACACCGCGAAC 59.524 61.111 8.23 0.00 46.97 3.95
1931 1971 5.077564 ACAAGTAAAGCTAAAGGGGGAAAG 58.922 41.667 0.00 0.00 0.00 2.62
1994 2036 2.821366 GCCCACATGTCAGCGGAG 60.821 66.667 0.00 0.00 0.00 4.63
2012 2054 0.673333 TGACAGGCGCCAATACAGTG 60.673 55.000 31.54 18.75 0.00 3.66
2023 2065 2.125229 ATGCTCAGCTGACAGGCG 60.125 61.111 13.74 3.66 37.29 5.52
2062 2105 9.547753 AATAAATGAACTGCTAGTATACACAGG 57.452 33.333 18.89 4.28 34.40 4.00
2074 2117 4.023279 TGACACGCAAATAAATGAACTGCT 60.023 37.500 0.00 0.00 0.00 4.24
2075 2118 4.225984 TGACACGCAAATAAATGAACTGC 58.774 39.130 0.00 0.00 0.00 4.40
2076 2119 4.853196 CCTGACACGCAAATAAATGAACTG 59.147 41.667 0.00 0.00 0.00 3.16
2136 2187 4.783450 GCAGCTCGAAAATTTGTAGATCCG 60.783 45.833 0.00 0.00 0.00 4.18
2144 2195 1.330306 CCACGCAGCTCGAAAATTTG 58.670 50.000 11.64 0.29 41.67 2.32
2146 2197 0.517316 GACCACGCAGCTCGAAAATT 59.483 50.000 11.64 0.00 41.67 1.82
2152 2203 2.433145 ACATGACCACGCAGCTCG 60.433 61.111 0.00 4.36 45.38 5.03
2153 2204 2.393768 CCACATGACCACGCAGCTC 61.394 63.158 0.00 0.00 0.00 4.09
2157 2208 2.281414 CACCCACATGACCACGCA 60.281 61.111 0.00 0.00 0.00 5.24
2194 2245 4.218852 CCTAGATCTCTCCCCGTTCATAAC 59.781 50.000 0.00 0.00 0.00 1.89
2207 2258 3.730269 ACCAAAAGAGGCCTAGATCTCT 58.270 45.455 4.42 0.00 41.63 3.10
2208 2259 4.080863 TGAACCAAAAGAGGCCTAGATCTC 60.081 45.833 4.42 0.00 0.00 2.75
2209 2260 3.846588 TGAACCAAAAGAGGCCTAGATCT 59.153 43.478 4.42 0.00 0.00 2.75
2210 2261 4.222124 TGAACCAAAAGAGGCCTAGATC 57.778 45.455 4.42 0.00 0.00 2.75
2211 2262 4.870021 ATGAACCAAAAGAGGCCTAGAT 57.130 40.909 4.42 0.00 0.00 1.98
2212 2263 4.164221 CCTATGAACCAAAAGAGGCCTAGA 59.836 45.833 4.42 0.00 0.00 2.43
2213 2264 4.164221 TCCTATGAACCAAAAGAGGCCTAG 59.836 45.833 4.42 0.00 0.00 3.02
2214 2265 4.108570 TCCTATGAACCAAAAGAGGCCTA 58.891 43.478 4.42 0.00 0.00 3.93
2215 2266 2.919602 TCCTATGAACCAAAAGAGGCCT 59.080 45.455 3.86 3.86 0.00 5.19
2216 2267 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
2217 2268 5.066593 CCTATCCTATGAACCAAAAGAGGC 58.933 45.833 0.00 0.00 0.00 4.70
2218 2269 6.500589 TCCTATCCTATGAACCAAAAGAGG 57.499 41.667 0.00 0.00 0.00 3.69
2222 2273 9.793259 GTGATAATCCTATCCTATGAACCAAAA 57.207 33.333 0.00 0.00 34.10 2.44
2223 2274 8.944138 TGTGATAATCCTATCCTATGAACCAAA 58.056 33.333 0.00 0.00 34.10 3.28
2224 2275 8.504811 TGTGATAATCCTATCCTATGAACCAA 57.495 34.615 0.00 0.00 34.10 3.67
2225 2276 7.180946 CCTGTGATAATCCTATCCTATGAACCA 59.819 40.741 0.00 0.00 34.10 3.67
2226 2277 7.400339 TCCTGTGATAATCCTATCCTATGAACC 59.600 40.741 0.00 0.00 34.10 3.62
2227 2278 8.367660 TCCTGTGATAATCCTATCCTATGAAC 57.632 38.462 0.00 0.00 34.10 3.18
2228 2279 8.972662 TTCCTGTGATAATCCTATCCTATGAA 57.027 34.615 0.00 0.00 34.10 2.57
2231 2282 9.667607 CCTATTCCTGTGATAATCCTATCCTAT 57.332 37.037 0.00 0.00 34.10 2.57
2232 2283 8.856974 TCCTATTCCTGTGATAATCCTATCCTA 58.143 37.037 0.00 0.00 34.10 2.94
2233 2284 7.723382 TCCTATTCCTGTGATAATCCTATCCT 58.277 38.462 0.00 0.00 34.10 3.24
2234 2285 7.979786 TCCTATTCCTGTGATAATCCTATCC 57.020 40.000 0.00 0.00 34.10 2.59
2236 2287 9.796242 AGATTCCTATTCCTGTGATAATCCTAT 57.204 33.333 0.00 0.00 0.00 2.57
2237 2288 9.621239 AAGATTCCTATTCCTGTGATAATCCTA 57.379 33.333 0.00 0.00 0.00 2.94
2238 2289 8.381636 CAAGATTCCTATTCCTGTGATAATCCT 58.618 37.037 0.00 0.00 0.00 3.24
2239 2290 8.160106 ACAAGATTCCTATTCCTGTGATAATCC 58.840 37.037 0.00 0.00 0.00 3.01
2242 2293 8.651389 CCTACAAGATTCCTATTCCTGTGATAA 58.349 37.037 0.00 0.00 0.00 1.75
2243 2294 8.010697 TCCTACAAGATTCCTATTCCTGTGATA 58.989 37.037 0.00 0.00 0.00 2.15
2244 2295 6.846505 TCCTACAAGATTCCTATTCCTGTGAT 59.153 38.462 0.00 0.00 0.00 3.06
2245 2296 6.202331 TCCTACAAGATTCCTATTCCTGTGA 58.798 40.000 0.00 0.00 0.00 3.58
2246 2297 6.485830 TCCTACAAGATTCCTATTCCTGTG 57.514 41.667 0.00 0.00 0.00 3.66
2247 2298 7.510675 TTTCCTACAAGATTCCTATTCCTGT 57.489 36.000 0.00 0.00 0.00 4.00
2248 2299 8.213679 TCATTTCCTACAAGATTCCTATTCCTG 58.786 37.037 0.00 0.00 0.00 3.86
2249 2300 8.337118 TCATTTCCTACAAGATTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
2250 2301 8.432805 TCTCATTTCCTACAAGATTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
2252 2303 9.790344 CATCTCATTTCCTACAAGATTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
2253 2304 9.163894 TCATCTCATTTCCTACAAGATTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
2254 2305 8.424918 GTCATCTCATTTCCTACAAGATTCCTA 58.575 37.037 0.00 0.00 0.00 2.94
2255 2306 7.092712 TGTCATCTCATTTCCTACAAGATTCCT 60.093 37.037 0.00 0.00 0.00 3.36
2256 2307 7.050377 TGTCATCTCATTTCCTACAAGATTCC 58.950 38.462 0.00 0.00 0.00 3.01
2257 2308 8.557864 CATGTCATCTCATTTCCTACAAGATTC 58.442 37.037 0.00 0.00 0.00 2.52
2258 2309 8.051535 ACATGTCATCTCATTTCCTACAAGATT 58.948 33.333 0.00 0.00 0.00 2.40
2259 2310 7.571919 ACATGTCATCTCATTTCCTACAAGAT 58.428 34.615 0.00 0.00 0.00 2.40
2260 2311 6.950842 ACATGTCATCTCATTTCCTACAAGA 58.049 36.000 0.00 0.00 0.00 3.02
2261 2312 8.899427 ATACATGTCATCTCATTTCCTACAAG 57.101 34.615 0.00 0.00 0.00 3.16
2262 2313 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
2263 2314 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
2264 2315 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
2273 2324 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
2274 2325 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
2275 2326 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
2276 2327 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
2277 2328 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
2278 2329 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
2295 2346 9.703892 CATCTTGTTTCCTATTCCTACTCATAG 57.296 37.037 0.00 0.00 0.00 2.23
2296 2347 9.213777 ACATCTTGTTTCCTATTCCTACTCATA 57.786 33.333 0.00 0.00 0.00 2.15
2297 2348 8.095452 ACATCTTGTTTCCTATTCCTACTCAT 57.905 34.615 0.00 0.00 0.00 2.90
2298 2349 7.180229 TGACATCTTGTTTCCTATTCCTACTCA 59.820 37.037 0.00 0.00 0.00 3.41
2299 2350 7.556844 TGACATCTTGTTTCCTATTCCTACTC 58.443 38.462 0.00 0.00 0.00 2.59
2300 2351 7.496346 TGACATCTTGTTTCCTATTCCTACT 57.504 36.000 0.00 0.00 0.00 2.57
2301 2352 8.738645 AATGACATCTTGTTTCCTATTCCTAC 57.261 34.615 0.00 0.00 0.00 3.18
2302 2353 9.177608 CAAATGACATCTTGTTTCCTATTCCTA 57.822 33.333 0.00 0.00 0.00 2.94
2303 2354 7.123247 CCAAATGACATCTTGTTTCCTATTCCT 59.877 37.037 0.00 0.00 0.00 3.36
2304 2355 7.093771 ACCAAATGACATCTTGTTTCCTATTCC 60.094 37.037 0.00 0.00 0.00 3.01
2305 2356 7.830739 ACCAAATGACATCTTGTTTCCTATTC 58.169 34.615 0.00 0.00 0.00 1.75
2306 2357 7.781324 ACCAAATGACATCTTGTTTCCTATT 57.219 32.000 0.00 0.00 0.00 1.73
2307 2358 7.451255 TCAACCAAATGACATCTTGTTTCCTAT 59.549 33.333 0.00 0.00 0.00 2.57
2308 2359 6.775142 TCAACCAAATGACATCTTGTTTCCTA 59.225 34.615 0.00 0.00 0.00 2.94
2309 2360 5.598005 TCAACCAAATGACATCTTGTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
2310 2361 5.841810 TCAACCAAATGACATCTTGTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
2328 2379 4.814234 GGAAAAATTCCTTTGGTGTCAACC 59.186 41.667 1.86 0.00 46.57 3.77
2329 2380 5.984233 GGAAAAATTCCTTTGGTGTCAAC 57.016 39.130 1.86 0.00 46.57 3.18
2342 2393 6.765915 AGCCTAGACTCAATGGAAAAATTC 57.234 37.500 0.00 0.00 0.00 2.17
2343 2394 7.544804 AAAGCCTAGACTCAATGGAAAAATT 57.455 32.000 0.00 0.00 0.00 1.82
2344 2395 7.544804 AAAAGCCTAGACTCAATGGAAAAAT 57.455 32.000 0.00 0.00 0.00 1.82
2345 2396 6.976934 AAAAGCCTAGACTCAATGGAAAAA 57.023 33.333 0.00 0.00 0.00 1.94
2346 2397 6.976934 AAAAAGCCTAGACTCAATGGAAAA 57.023 33.333 0.00 0.00 0.00 2.29
2373 2424 9.372189 CCTATCCTCCAAATTTCATAGGAAAAT 57.628 33.333 6.65 0.00 45.52 1.82
2374 2425 8.565239 TCCTATCCTCCAAATTTCATAGGAAAA 58.435 33.333 6.65 7.19 45.52 2.29
2375 2426 8.113114 TCCTATCCTCCAAATTTCATAGGAAA 57.887 34.615 4.85 4.85 46.36 3.13
2376 2427 7.705912 TCCTATCCTCCAAATTTCATAGGAA 57.294 36.000 13.83 0.00 39.17 3.36
2377 2428 7.421382 GGTTCCTATCCTCCAAATTTCATAGGA 60.421 40.741 12.71 12.71 39.98 2.94
2378 2429 6.717084 GGTTCCTATCCTCCAAATTTCATAGG 59.283 42.308 4.32 4.32 35.93 2.57
2379 2430 7.290061 TGGTTCCTATCCTCCAAATTTCATAG 58.710 38.462 0.00 0.00 0.00 2.23
2380 2431 7.219601 TGGTTCCTATCCTCCAAATTTCATA 57.780 36.000 0.00 0.00 0.00 2.15
2381 2432 6.091076 TGGTTCCTATCCTCCAAATTTCAT 57.909 37.500 0.00 0.00 0.00 2.57
2382 2433 5.528600 TGGTTCCTATCCTCCAAATTTCA 57.471 39.130 0.00 0.00 0.00 2.69
2383 2434 6.040955 GGATTGGTTCCTATCCTCCAAATTTC 59.959 42.308 19.71 0.00 42.10 2.17
2384 2435 5.899547 GGATTGGTTCCTATCCTCCAAATTT 59.100 40.000 19.71 0.00 42.10 1.82
2385 2436 5.458595 GGATTGGTTCCTATCCTCCAAATT 58.541 41.667 19.71 0.00 42.10 1.82
2386 2437 5.066913 GGATTGGTTCCTATCCTCCAAAT 57.933 43.478 19.71 0.00 42.10 2.32
2387 2438 4.519906 GGATTGGTTCCTATCCTCCAAA 57.480 45.455 19.71 0.00 42.10 3.28
2407 2458 8.830741 AGAAATGGATTCCTATTCCTACATAGG 58.169 37.037 13.88 0.00 45.32 2.57
2411 2462 9.392506 TCATAGAAATGGATTCCTATTCCTACA 57.607 33.333 13.88 0.00 38.94 2.74
2414 2465 8.166726 GGTTCATAGAAATGGATTCCTATTCCT 58.833 37.037 13.88 5.21 38.94 3.36
2415 2466 7.944554 TGGTTCATAGAAATGGATTCCTATTCC 59.055 37.037 13.88 0.00 38.94 3.01
2416 2467 8.924511 TGGTTCATAGAAATGGATTCCTATTC 57.075 34.615 3.95 8.33 38.94 1.75
2417 2468 9.713684 TTTGGTTCATAGAAATGGATTCCTATT 57.286 29.630 3.95 0.00 38.94 1.73
2418 2469 9.359653 CTTTGGTTCATAGAAATGGATTCCTAT 57.640 33.333 3.95 0.00 38.94 2.57
2419 2470 7.779798 CCTTTGGTTCATAGAAATGGATTCCTA 59.220 37.037 3.95 0.00 38.94 2.94
2420 2471 6.608808 CCTTTGGTTCATAGAAATGGATTCCT 59.391 38.462 3.95 0.00 38.94 3.36
2421 2472 6.183360 CCCTTTGGTTCATAGAAATGGATTCC 60.183 42.308 0.00 0.00 38.94 3.01
2422 2473 6.683861 GCCCTTTGGTTCATAGAAATGGATTC 60.684 42.308 0.00 0.00 38.39 2.52
2423 2474 5.129320 GCCCTTTGGTTCATAGAAATGGATT 59.871 40.000 0.00 0.00 33.61 3.01
2424 2475 4.651045 GCCCTTTGGTTCATAGAAATGGAT 59.349 41.667 0.00 0.00 33.61 3.41
2425 2476 4.023291 GCCCTTTGGTTCATAGAAATGGA 58.977 43.478 0.00 0.00 33.61 3.41
2426 2477 4.026052 AGCCCTTTGGTTCATAGAAATGG 58.974 43.478 0.00 0.00 33.61 3.16
2427 2478 4.952335 AGAGCCCTTTGGTTCATAGAAATG 59.048 41.667 0.00 0.00 43.89 2.32
2428 2479 5.198602 AGAGCCCTTTGGTTCATAGAAAT 57.801 39.130 0.00 0.00 43.89 2.17
2429 2480 4.657814 AGAGCCCTTTGGTTCATAGAAA 57.342 40.909 0.00 0.00 43.89 2.52
2430 2481 5.772393 TTAGAGCCCTTTGGTTCATAGAA 57.228 39.130 0.00 0.00 43.89 2.10
2431 2482 5.339200 CCTTTAGAGCCCTTTGGTTCATAGA 60.339 44.000 0.00 0.00 43.89 1.98
2432 2483 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
2433 2484 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
2434 2485 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
2435 2486 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
2436 2487 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
2437 2488 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
2438 2489 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
2478 2529 9.853177 GAGGAATTTCATAGGAATTCTAAAGGA 57.147 33.333 5.23 0.00 31.93 3.36
2479 2530 9.859152 AGAGGAATTTCATAGGAATTCTAAAGG 57.141 33.333 5.23 0.00 31.93 3.11
2484 2535 9.634021 GGTTTAGAGGAATTTCATAGGAATTCT 57.366 33.333 5.23 0.00 31.93 2.40
2485 2536 9.408648 TGGTTTAGAGGAATTTCATAGGAATTC 57.591 33.333 0.00 0.00 31.93 2.17
2486 2537 9.768215 TTGGTTTAGAGGAATTTCATAGGAATT 57.232 29.630 0.00 0.00 31.93 2.17
2487 2538 9.768215 TTTGGTTTAGAGGAATTTCATAGGAAT 57.232 29.630 0.00 0.00 31.93 3.01
2488 2539 9.243105 CTTTGGTTTAGAGGAATTTCATAGGAA 57.757 33.333 0.00 0.00 0.00 3.36
2489 2540 7.834181 CCTTTGGTTTAGAGGAATTTCATAGGA 59.166 37.037 0.00 0.00 32.11 2.94
2490 2541 7.834181 TCCTTTGGTTTAGAGGAATTTCATAGG 59.166 37.037 0.00 0.00 36.67 2.57
2491 2542 8.807948 TCCTTTGGTTTAGAGGAATTTCATAG 57.192 34.615 0.00 0.00 36.67 2.23
2492 2543 8.611257 TCTCCTTTGGTTTAGAGGAATTTCATA 58.389 33.333 0.00 0.00 39.00 2.15
2493 2544 7.470192 TCTCCTTTGGTTTAGAGGAATTTCAT 58.530 34.615 0.00 0.00 39.00 2.57
2494 2545 6.848069 TCTCCTTTGGTTTAGAGGAATTTCA 58.152 36.000 0.00 0.00 39.00 2.69
2495 2546 7.831690 AGATCTCCTTTGGTTTAGAGGAATTTC 59.168 37.037 0.00 0.00 39.00 2.17
2496 2547 7.703755 AGATCTCCTTTGGTTTAGAGGAATTT 58.296 34.615 0.00 0.00 39.00 1.82
2497 2548 7.277405 AGATCTCCTTTGGTTTAGAGGAATT 57.723 36.000 0.00 0.00 39.00 2.17
2498 2549 6.899892 AGATCTCCTTTGGTTTAGAGGAAT 57.100 37.500 0.00 0.00 39.00 3.01
2499 2550 6.960542 ACTAGATCTCCTTTGGTTTAGAGGAA 59.039 38.462 0.00 0.00 39.00 3.36
2500 2551 6.381420 CACTAGATCTCCTTTGGTTTAGAGGA 59.619 42.308 0.00 0.00 37.24 3.71
2501 2552 6.155393 ACACTAGATCTCCTTTGGTTTAGAGG 59.845 42.308 0.00 0.00 0.00 3.69
2502 2553 7.123547 AGACACTAGATCTCCTTTGGTTTAGAG 59.876 40.741 0.00 0.00 0.00 2.43
2503 2554 6.954684 AGACACTAGATCTCCTTTGGTTTAGA 59.045 38.462 0.00 0.00 0.00 2.10
2504 2555 7.176589 AGACACTAGATCTCCTTTGGTTTAG 57.823 40.000 0.00 0.00 0.00 1.85
2505 2556 6.127703 CGAGACACTAGATCTCCTTTGGTTTA 60.128 42.308 17.57 0.00 39.64 2.01
2506 2557 5.336849 CGAGACACTAGATCTCCTTTGGTTT 60.337 44.000 17.57 0.00 39.64 3.27
2507 2558 4.158764 CGAGACACTAGATCTCCTTTGGTT 59.841 45.833 17.57 0.00 39.64 3.67
2508 2559 3.697045 CGAGACACTAGATCTCCTTTGGT 59.303 47.826 17.57 0.00 39.64 3.67
2509 2560 3.067461 CCGAGACACTAGATCTCCTTTGG 59.933 52.174 17.57 11.73 39.64 3.28
2510 2561 3.490078 GCCGAGACACTAGATCTCCTTTG 60.490 52.174 17.57 0.00 39.64 2.77
2511 2562 2.691011 GCCGAGACACTAGATCTCCTTT 59.309 50.000 17.57 0.00 39.64 3.11
2512 2563 2.303175 GCCGAGACACTAGATCTCCTT 58.697 52.381 17.57 0.00 39.64 3.36
2513 2564 1.812324 CGCCGAGACACTAGATCTCCT 60.812 57.143 17.57 0.00 39.64 3.69
2514 2565 0.589223 CGCCGAGACACTAGATCTCC 59.411 60.000 17.57 8.23 39.64 3.71
2515 2566 0.589223 CCGCCGAGACACTAGATCTC 59.411 60.000 14.95 14.95 39.44 2.75
2516 2567 0.180642 TCCGCCGAGACACTAGATCT 59.819 55.000 0.00 0.00 0.00 2.75
2532 2583 4.436998 GACCGTGTCAGCCCTCCG 62.437 72.222 0.00 0.00 32.09 4.63
2560 2611 0.362179 CGACGACATGTGCACGTAAG 59.638 55.000 12.10 8.51 40.29 2.34
2564 2615 1.934001 CTCACGACGACATGTGCACG 61.934 60.000 13.13 8.32 36.06 5.34
2565 2616 1.775344 CTCACGACGACATGTGCAC 59.225 57.895 10.75 10.75 36.06 4.57
2579 2632 0.179108 GTAGACCATGGACGGCTCAC 60.179 60.000 21.47 4.63 0.00 3.51
2636 2711 3.529634 TGCAGTAACAAATTTCCGTCG 57.470 42.857 0.00 0.00 0.00 5.12
2689 2767 3.813443 TCCAGCCAAATAAGATCAGAGC 58.187 45.455 0.00 0.00 0.00 4.09
2690 2768 4.275443 GCTTCCAGCCAAATAAGATCAGAG 59.725 45.833 0.00 0.00 34.48 3.35
2697 2775 1.401905 GACCGCTTCCAGCCAAATAAG 59.598 52.381 0.00 0.00 38.18 1.73
2698 2776 1.004277 AGACCGCTTCCAGCCAAATAA 59.996 47.619 0.00 0.00 38.18 1.40
2700 2778 0.678048 GAGACCGCTTCCAGCCAAAT 60.678 55.000 0.00 0.00 38.18 2.32
2702 2780 2.050836 TTGAGACCGCTTCCAGCCAA 62.051 55.000 0.00 0.00 38.18 4.52
2704 2782 1.301677 CTTTGAGACCGCTTCCAGCC 61.302 60.000 0.00 0.00 38.18 4.85
2705 2783 1.301677 CCTTTGAGACCGCTTCCAGC 61.302 60.000 0.00 0.00 38.02 4.85
2707 2785 1.302511 GCCTTTGAGACCGCTTCCA 60.303 57.895 0.00 0.00 0.00 3.53
2794 2921 0.235926 GAACGCACAAGTCAGAAGCC 59.764 55.000 0.00 0.00 0.00 4.35
2825 2952 2.740055 GTCTCTGCACTGCACCGG 60.740 66.667 0.00 0.00 33.79 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.