Multiple sequence alignment - TraesCS2A01G451300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G451300 chr2A 100.000 9623 0 0 1 9623 700963731 700954109 0.000000e+00 17771.0
1 TraesCS2A01G451300 chr2A 93.961 2550 146 7 2168 4713 700983182 700985727 0.000000e+00 3849.0
2 TraesCS2A01G451300 chr2A 90.292 1813 125 21 4979 6763 700986290 700988079 0.000000e+00 2326.0
3 TraesCS2A01G451300 chr2A 89.047 1753 160 22 7156 8884 700988084 700989828 0.000000e+00 2145.0
4 TraesCS2A01G451300 chr2A 84.868 152 21 2 1732 1883 700980657 700980806 1.670000e-32 152.0
5 TraesCS2A01G451300 chr2A 94.737 38 2 0 789 826 89772299 89772336 1.040000e-04 60.2
6 TraesCS2A01G451300 chr2D 95.455 5545 165 30 1625 7151 560965123 560959648 0.000000e+00 8763.0
7 TraesCS2A01G451300 chr2D 93.454 2551 156 7 2168 4712 561027173 561029718 0.000000e+00 3775.0
8 TraesCS2A01G451300 chr2D 95.382 2057 63 15 7151 9199 560959488 560957456 0.000000e+00 3243.0
9 TraesCS2A01G451300 chr2D 90.260 2074 160 27 4713 6754 561029754 561031817 0.000000e+00 2673.0
10 TraesCS2A01G451300 chr2D 89.026 1704 162 19 7156 8843 561031830 561033524 0.000000e+00 2087.0
11 TraesCS2A01G451300 chr2D 86.825 759 48 18 69 800 560966553 560965820 0.000000e+00 800.0
12 TraesCS2A01G451300 chr2D 92.776 526 15 6 915 1422 560965823 560965303 0.000000e+00 739.0
13 TraesCS2A01G451300 chr2D 95.960 99 1 1 1422 1517 560965267 560965169 3.600000e-34 158.0
14 TraesCS2A01G451300 chr2D 87.778 90 3 2 9347 9428 27903251 27903162 2.210000e-16 99.0
15 TraesCS2A01G451300 chr2D 94.872 39 2 0 789 827 533779816 533779778 2.900000e-05 62.1
16 TraesCS2A01G451300 chr2B 96.242 4311 134 10 2135 6432 669443097 669438802 0.000000e+00 7038.0
17 TraesCS2A01G451300 chr2B 92.278 2551 188 8 2168 4713 669664072 669666618 0.000000e+00 3611.0
18 TraesCS2A01G451300 chr2B 90.553 2170 152 30 7156 9310 669437733 669435602 0.000000e+00 2822.0
19 TraesCS2A01G451300 chr2B 89.080 2271 187 37 4718 6944 669666662 669668915 0.000000e+00 2763.0
20 TraesCS2A01G451300 chr2B 88.700 1708 165 19 7156 8843 669669043 669670742 0.000000e+00 2060.0
21 TraesCS2A01G451300 chr2B 89.682 1289 59 34 863 2102 669444361 669443098 0.000000e+00 1576.0
22 TraesCS2A01G451300 chr2B 88.124 741 45 22 8 724 669445141 669444420 0.000000e+00 841.0
23 TraesCS2A01G451300 chr2B 89.981 529 46 4 6431 6953 669438708 669438181 0.000000e+00 676.0
24 TraesCS2A01G451300 chr2B 91.781 73 5 1 6691 6763 669668967 669669038 6.150000e-17 100.0
25 TraesCS2A01G451300 chr2B 96.610 59 2 0 9371 9429 560440165 560440223 2.210000e-16 99.0
26 TraesCS2A01G451300 chr7B 91.767 498 38 3 2518 3012 553234179 553234676 0.000000e+00 689.0
27 TraesCS2A01G451300 chr7B 93.103 58 3 1 9371 9428 501678878 501678822 6.190000e-12 84.2
28 TraesCS2A01G451300 chrUn 95.631 412 18 0 3855 4266 477536858 477536447 0.000000e+00 662.0
29 TraesCS2A01G451300 chr7A 90.361 83 4 3 9347 9428 617576643 617576722 1.320000e-18 106.0
30 TraesCS2A01G451300 chr7A 93.220 59 2 2 9372 9428 80919894 80919836 1.720000e-12 86.1
31 TraesCS2A01G451300 chr3B 96.491 57 2 0 9372 9428 698233697 698233641 2.860000e-15 95.3
32 TraesCS2A01G451300 chr3B 90.476 42 4 0 789 830 106281116 106281157 1.000000e-03 56.5
33 TraesCS2A01G451300 chr6D 85.870 92 5 1 9347 9430 336996647 336996738 3.700000e-14 91.6
34 TraesCS2A01G451300 chr3A 94.828 58 3 0 9371 9428 699417164 699417107 3.700000e-14 91.6
35 TraesCS2A01G451300 chr3A 94.737 57 3 0 9372 9428 424255108 424255164 1.330000e-13 89.8
36 TraesCS2A01G451300 chr1A 97.368 38 0 1 796 833 73330470 73330434 8.070000e-06 63.9
37 TraesCS2A01G451300 chr1A 100.000 33 0 0 793 825 557981154 557981122 2.900000e-05 62.1
38 TraesCS2A01G451300 chr1A 94.737 38 2 0 789 826 16438655 16438692 1.040000e-04 60.2
39 TraesCS2A01G451300 chr6B 94.872 39 2 0 789 827 719432893 719432855 2.900000e-05 62.1
40 TraesCS2A01G451300 chr4D 100.000 33 0 0 795 827 499585757 499585789 2.900000e-05 62.1
41 TraesCS2A01G451300 chr5B 89.583 48 4 1 778 825 25327772 25327818 1.040000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G451300 chr2A 700954109 700963731 9622 True 17771.0 17771 100.000000 1 9623 1 chr2A.!!$R1 9622
1 TraesCS2A01G451300 chr2A 700980657 700989828 9171 False 2118.0 3849 89.542000 1732 8884 4 chr2A.!!$F2 7152
2 TraesCS2A01G451300 chr2D 561027173 561033524 6351 False 2845.0 3775 90.913333 2168 8843 3 chr2D.!!$F1 6675
3 TraesCS2A01G451300 chr2D 560957456 560966553 9097 True 2740.6 8763 93.279600 69 9199 5 chr2D.!!$R3 9130
4 TraesCS2A01G451300 chr2B 669435602 669445141 9539 True 2590.6 7038 90.916400 8 9310 5 chr2B.!!$R1 9302
5 TraesCS2A01G451300 chr2B 669664072 669670742 6670 False 2133.5 3611 90.459750 2168 8843 4 chr2B.!!$F2 6675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 474 0.603569 TCCTTGCTCTCTTGTCGTCC 59.396 55.000 0.00 0.0 0.00 4.79 F
1060 1094 0.039617 CCGCACCGCATTTCTTTTCA 60.040 50.000 0.00 0.0 0.00 2.69 F
1197 1245 0.324460 TCGTTCCCTTCTCTCCCTCC 60.324 60.000 0.00 0.0 0.00 4.30 F
1812 1948 0.379669 GTGAAGGGCAATGATCAGCG 59.620 55.000 0.09 0.0 0.00 5.18 F
3037 5330 1.241990 TGGACCTCGTCACCTTCTCG 61.242 60.000 0.00 0.0 33.68 4.04 F
4164 6457 2.841442 ACAGAAGTACCAAGGAGTGC 57.159 50.000 0.00 0.0 0.00 4.40 F
4862 7202 3.753193 GCCTGATGGGGATGCTTAAAGAT 60.753 47.826 0.00 0.0 35.12 2.40 F
5359 7961 1.382009 TGGGCATACCTGACGGCTA 60.382 57.895 0.00 0.0 41.11 3.93 F
6177 8823 1.063417 CAAAGGGCTCCAATCCTCCAT 60.063 52.381 0.00 0.0 32.02 3.41 F
8244 11740 1.063266 AGTTGTTTTGCCTGGGAAGGA 60.063 47.619 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2408 4701 0.531311 TACTGAGCCGCGATACTCGA 60.531 55.000 8.23 2.17 43.74 4.04 R
2842 5135 3.073678 TGTGAACAGGTCCATCAATTCG 58.926 45.455 0.00 0.00 0.00 3.34 R
3154 5447 1.503542 CCTGCGTTCAACATCTGCC 59.496 57.895 0.00 0.00 0.00 4.85 R
4078 6371 3.999663 CTCGATCAGCTGAAACTTTTCCT 59.000 43.478 22.50 0.00 36.36 3.36 R
4657 6950 0.598065 CCTTGAAAAGTTGGGCTCCG 59.402 55.000 0.00 0.00 44.25 4.63 R
5359 7961 0.670162 GCTAATGCGCCACCATGAAT 59.330 50.000 4.18 0.00 0.00 2.57 R
6129 8775 0.748005 AGAGACGAGCCAGCTCTCTC 60.748 60.000 25.53 25.53 41.77 3.20 R
6304 8950 1.446907 CTGAAGCAAAGCCACTCGAT 58.553 50.000 0.00 0.00 0.00 3.59 R
8411 11907 0.992802 GCTTACCTTCGCTGAAGACG 59.007 55.000 16.51 6.49 41.71 4.18 R
9570 13102 0.173481 CGGCTCGAGGAATTCACTGA 59.827 55.000 15.58 0.39 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.041940 GTCAGGTGGCGACGTTGG 61.042 66.667 4.64 0.00 0.00 3.77
222 226 2.514013 ATAGCTTTTCGCCGCGACG 61.514 57.895 16.57 9.05 40.39 5.12
264 268 3.787001 GAGGCCCTTCTCCCGTGG 61.787 72.222 0.00 0.00 0.00 4.94
338 347 4.535094 TTTGCGCGCCGATGCATC 62.535 61.111 30.77 17.10 41.42 3.91
377 386 1.418334 CCGGGTCAGAATCAGGAGAT 58.582 55.000 0.00 0.00 35.53 2.75
378 387 1.069823 CCGGGTCAGAATCAGGAGATG 59.930 57.143 0.00 0.00 33.90 2.90
379 388 1.069823 CGGGTCAGAATCAGGAGATGG 59.930 57.143 0.00 0.00 33.90 3.51
381 390 1.419387 GGTCAGAATCAGGAGATGGGG 59.581 57.143 0.00 0.00 33.90 4.96
383 392 2.774234 GTCAGAATCAGGAGATGGGGAA 59.226 50.000 0.00 0.00 33.90 3.97
384 393 3.393941 GTCAGAATCAGGAGATGGGGAAT 59.606 47.826 0.00 0.00 33.90 3.01
414 431 8.893563 ATAGGGGAGATTTGTTTTGTTTATCA 57.106 30.769 0.00 0.00 0.00 2.15
415 432 7.797121 AGGGGAGATTTGTTTTGTTTATCAT 57.203 32.000 0.00 0.00 0.00 2.45
416 433 8.893563 AGGGGAGATTTGTTTTGTTTATCATA 57.106 30.769 0.00 0.00 0.00 2.15
417 434 8.749354 AGGGGAGATTTGTTTTGTTTATCATAC 58.251 33.333 0.00 0.00 0.00 2.39
418 435 8.749354 GGGGAGATTTGTTTTGTTTATCATACT 58.251 33.333 0.00 0.00 0.00 2.12
419 436 9.573133 GGGAGATTTGTTTTGTTTATCATACTG 57.427 33.333 0.00 0.00 0.00 2.74
431 448 9.678941 TTGTTTATCATACTGCTACTAATCTCG 57.321 33.333 0.00 0.00 0.00 4.04
454 471 1.000283 ACTGTCCTTGCTCTCTTGTCG 60.000 52.381 0.00 0.00 0.00 4.35
456 473 1.000163 TGTCCTTGCTCTCTTGTCGTC 60.000 52.381 0.00 0.00 0.00 4.20
457 474 0.603569 TCCTTGCTCTCTTGTCGTCC 59.396 55.000 0.00 0.00 0.00 4.79
466 483 2.361757 TCTCTTGTCGTCCGTGGTTAAA 59.638 45.455 0.00 0.00 0.00 1.52
487 504 1.419374 CTGTTCTGCACGTACCTGTC 58.581 55.000 0.00 0.00 0.00 3.51
524 541 1.060122 CCGTTTGATCGCGTTAACCTC 59.940 52.381 5.77 0.00 0.00 3.85
615 637 3.054875 TCACAAGGGATGAGATGGAACTG 60.055 47.826 0.00 0.00 0.00 3.16
626 648 8.481314 GGATGAGATGGAACTGCTGATAATATA 58.519 37.037 0.00 0.00 0.00 0.86
648 670 1.340211 ACTCGTGTGGGTTGTGGAAAA 60.340 47.619 0.00 0.00 0.00 2.29
652 674 1.136110 GTGTGGGTTGTGGAAAAGGTG 59.864 52.381 0.00 0.00 0.00 4.00
683 705 5.468746 TCAGGCATAATATTCGCTTTACCAC 59.531 40.000 9.06 0.00 0.00 4.16
684 706 4.451096 AGGCATAATATTCGCTTTACCACG 59.549 41.667 9.06 0.00 0.00 4.94
716 748 9.958180 TCAAATCATCTATTACAAAGAACTCCA 57.042 29.630 0.00 0.00 0.00 3.86
755 789 9.709495 GACTATATACATATACTACTCCCTCCG 57.291 40.741 0.00 0.00 0.00 4.63
761 795 7.902920 ACATATACTACTCCCTCCGTAAAAA 57.097 36.000 0.00 0.00 0.00 1.94
784 818 7.907214 AAAACATAAGAGCGTTTAGATCACT 57.093 32.000 0.00 0.00 37.82 3.41
785 819 8.997621 AAAACATAAGAGCGTTTAGATCACTA 57.002 30.769 0.00 0.00 37.82 2.74
786 820 8.997621 AAACATAAGAGCGTTTAGATCACTAA 57.002 30.769 0.00 0.00 37.82 2.24
787 821 9.601217 AAACATAAGAGCGTTTAGATCACTAAT 57.399 29.630 0.00 0.00 38.23 1.73
788 822 9.601217 AACATAAGAGCGTTTAGATCACTAATT 57.399 29.630 0.00 0.00 38.23 1.40
789 823 9.250624 ACATAAGAGCGTTTAGATCACTAATTC 57.749 33.333 0.00 0.00 38.23 2.17
790 824 8.704234 CATAAGAGCGTTTAGATCACTAATTCC 58.296 37.037 0.00 0.00 38.23 3.01
791 825 6.222038 AGAGCGTTTAGATCACTAATTCCA 57.778 37.500 0.00 0.00 38.23 3.53
792 826 6.821388 AGAGCGTTTAGATCACTAATTCCAT 58.179 36.000 0.00 0.00 38.23 3.41
793 827 7.275920 AGAGCGTTTAGATCACTAATTCCATT 58.724 34.615 0.00 0.00 38.23 3.16
794 828 7.439655 AGAGCGTTTAGATCACTAATTCCATTC 59.560 37.037 0.00 0.00 38.23 2.67
834 868 4.401837 ACGTTTAGATCACTAACTCCCTCC 59.598 45.833 0.00 0.00 38.18 4.30
836 870 2.830651 AGATCACTAACTCCCTCCGT 57.169 50.000 0.00 0.00 0.00 4.69
837 871 3.947612 AGATCACTAACTCCCTCCGTA 57.052 47.619 0.00 0.00 0.00 4.02
838 872 4.246712 AGATCACTAACTCCCTCCGTAA 57.753 45.455 0.00 0.00 0.00 3.18
839 873 4.607239 AGATCACTAACTCCCTCCGTAAA 58.393 43.478 0.00 0.00 0.00 2.01
840 874 4.645588 AGATCACTAACTCCCTCCGTAAAG 59.354 45.833 0.00 0.00 0.00 1.85
841 875 4.038271 TCACTAACTCCCTCCGTAAAGA 57.962 45.455 0.00 0.00 0.00 2.52
842 876 4.410099 TCACTAACTCCCTCCGTAAAGAA 58.590 43.478 0.00 0.00 0.00 2.52
843 877 4.834496 TCACTAACTCCCTCCGTAAAGAAA 59.166 41.667 0.00 0.00 0.00 2.52
844 878 5.482878 TCACTAACTCCCTCCGTAAAGAAAT 59.517 40.000 0.00 0.00 0.00 2.17
845 879 6.664816 TCACTAACTCCCTCCGTAAAGAAATA 59.335 38.462 0.00 0.00 0.00 1.40
846 880 7.343833 TCACTAACTCCCTCCGTAAAGAAATAT 59.656 37.037 0.00 0.00 0.00 1.28
847 881 8.636213 CACTAACTCCCTCCGTAAAGAAATATA 58.364 37.037 0.00 0.00 0.00 0.86
848 882 9.205513 ACTAACTCCCTCCGTAAAGAAATATAA 57.794 33.333 0.00 0.00 0.00 0.98
849 883 9.694137 CTAACTCCCTCCGTAAAGAAATATAAG 57.306 37.037 0.00 0.00 0.00 1.73
850 884 7.063934 ACTCCCTCCGTAAAGAAATATAAGG 57.936 40.000 0.00 0.00 0.00 2.69
851 885 6.042897 ACTCCCTCCGTAAAGAAATATAAGGG 59.957 42.308 0.00 0.00 41.93 3.95
852 886 5.001874 CCCTCCGTAAAGAAATATAAGGGC 58.998 45.833 0.00 0.00 34.93 5.19
853 887 5.455612 CCCTCCGTAAAGAAATATAAGGGCA 60.456 44.000 0.00 0.00 34.93 5.36
854 888 6.238648 CCTCCGTAAAGAAATATAAGGGCAT 58.761 40.000 0.00 0.00 0.00 4.40
855 889 6.371825 CCTCCGTAAAGAAATATAAGGGCATC 59.628 42.308 0.00 0.00 0.00 3.91
856 890 6.833041 TCCGTAAAGAAATATAAGGGCATCA 58.167 36.000 0.00 0.00 0.00 3.07
857 891 6.934645 TCCGTAAAGAAATATAAGGGCATCAG 59.065 38.462 0.00 0.00 0.00 2.90
858 892 6.149474 CCGTAAAGAAATATAAGGGCATCAGG 59.851 42.308 0.00 0.00 0.00 3.86
859 893 6.149474 CGTAAAGAAATATAAGGGCATCAGGG 59.851 42.308 0.00 0.00 0.00 4.45
860 894 4.664688 AGAAATATAAGGGCATCAGGGG 57.335 45.455 0.00 0.00 0.00 4.79
861 895 3.334881 AGAAATATAAGGGCATCAGGGGG 59.665 47.826 0.00 0.00 0.00 5.40
883 917 7.400439 GGGGGAGTACCAATATACTAAAATCC 58.600 42.308 0.00 0.00 42.91 3.01
884 918 7.017850 GGGGGAGTACCAATATACTAAAATCCA 59.982 40.741 0.00 0.00 42.91 3.41
888 922 8.882415 AGTACCAATATACTAAAATCCACACG 57.118 34.615 0.00 0.00 33.50 4.49
903 937 5.147330 TCCACACGATTCAGTTGAATAGT 57.853 39.130 12.83 12.83 46.40 2.12
907 941 5.635280 CACACGATTCAGTTGAATAGTCACT 59.365 40.000 14.92 0.00 44.63 3.41
911 945 5.292834 CGATTCAGTTGAATAGTCACTGCAT 59.707 40.000 14.09 10.72 44.14 3.96
939 973 4.881920 ACAGTTTGCCATACCAAATTGAC 58.118 39.130 14.29 0.00 41.89 3.18
962 996 3.439857 TTCTCCTTACCAAGCAAGCAT 57.560 42.857 0.00 0.00 0.00 3.79
1060 1094 0.039617 CCGCACCGCATTTCTTTTCA 60.040 50.000 0.00 0.00 0.00 2.69
1061 1095 1.402720 CCGCACCGCATTTCTTTTCAT 60.403 47.619 0.00 0.00 0.00 2.57
1062 1096 2.327568 CGCACCGCATTTCTTTTCATT 58.672 42.857 0.00 0.00 0.00 2.57
1063 1097 2.730928 CGCACCGCATTTCTTTTCATTT 59.269 40.909 0.00 0.00 0.00 2.32
1064 1098 3.181541 CGCACCGCATTTCTTTTCATTTC 60.182 43.478 0.00 0.00 0.00 2.17
1068 1102 4.280677 ACCGCATTTCTTTTCATTTCTGGA 59.719 37.500 0.00 0.00 0.00 3.86
1076 1110 4.946157 TCTTTTCATTTCTGGATCCTCTGC 59.054 41.667 14.23 0.00 0.00 4.26
1133 1173 1.575447 ATCAGGGCCAAAGGGTCTCC 61.575 60.000 6.18 0.00 39.39 3.71
1197 1245 0.324460 TCGTTCCCTTCTCTCCCTCC 60.324 60.000 0.00 0.00 0.00 4.30
1211 1259 1.221635 CCCTCCCTCTCTCTCTCTCA 58.778 60.000 0.00 0.00 0.00 3.27
1215 1263 2.505407 CTCCCTCTCTCTCTCTCACTCA 59.495 54.545 0.00 0.00 0.00 3.41
1217 1265 2.026356 CCCTCTCTCTCTCTCACTCACA 60.026 54.545 0.00 0.00 0.00 3.58
1218 1266 3.371917 CCCTCTCTCTCTCTCACTCACAT 60.372 52.174 0.00 0.00 0.00 3.21
1236 1297 1.542915 CATTTTGCCACAGACCCTCAG 59.457 52.381 0.00 0.00 0.00 3.35
1261 1322 1.383248 ATGGACGAAGGAGGAGGGG 60.383 63.158 0.00 0.00 0.00 4.79
1400 1462 2.025344 GCAGGTTCATCCATCCATGCA 61.025 52.381 0.00 0.00 39.02 3.96
1547 1649 5.483811 AGTAAGGGTTTGTTTGTTTGGTTG 58.516 37.500 0.00 0.00 0.00 3.77
1548 1650 4.359434 AAGGGTTTGTTTGTTTGGTTGT 57.641 36.364 0.00 0.00 0.00 3.32
1549 1651 4.359434 AGGGTTTGTTTGTTTGGTTGTT 57.641 36.364 0.00 0.00 0.00 2.83
1550 1652 4.720046 AGGGTTTGTTTGTTTGGTTGTTT 58.280 34.783 0.00 0.00 0.00 2.83
1604 1731 5.560966 AGAATGTGCCCGTAATTTAGTTG 57.439 39.130 0.00 0.00 0.00 3.16
1609 1736 2.089201 GCCCGTAATTTAGTTGGCACT 58.911 47.619 0.00 0.00 38.73 4.40
1611 1738 2.350498 CCCGTAATTTAGTTGGCACTCG 59.650 50.000 0.00 0.00 34.06 4.18
1619 1746 1.101049 AGTTGGCACTCGGTGGTTTG 61.101 55.000 6.23 0.00 33.64 2.93
1629 1756 1.028905 CGGTGGTTTGTGTGGAATGT 58.971 50.000 0.00 0.00 0.00 2.71
1630 1757 1.268999 CGGTGGTTTGTGTGGAATGTG 60.269 52.381 0.00 0.00 0.00 3.21
1638 1765 5.006552 GGTTTGTGTGGAATGTGTTCATTTG 59.993 40.000 0.00 0.00 43.33 2.32
1643 1771 6.922407 TGTGTGGAATGTGTTCATTTGTTATG 59.078 34.615 0.00 0.00 43.33 1.90
1666 1794 7.202016 TGTAACTAAGTGAGGCTCAATTTTG 57.798 36.000 31.73 25.25 36.07 2.44
1709 1841 7.803189 CGCTGCATTAATTAATTTACCTACAGG 59.197 37.037 8.01 0.00 42.17 4.00
1756 1888 3.820467 TGTAGGTTCAAAACATGCTCCTG 59.180 43.478 0.00 0.00 34.96 3.86
1789 1921 1.202076 GCAAACTGGAGCGATAACAGC 60.202 52.381 4.92 0.00 35.70 4.40
1795 1927 0.811616 GGAGCGATAACAGCCAGGTG 60.812 60.000 0.00 0.00 34.64 4.00
1812 1948 0.379669 GTGAAGGGCAATGATCAGCG 59.620 55.000 0.09 0.00 0.00 5.18
1886 2022 2.704572 ACAAACACTCCTATGCAGCTC 58.295 47.619 0.00 0.00 0.00 4.09
1890 2026 3.304911 ACACTCCTATGCAGCTCTCTA 57.695 47.619 0.00 0.00 0.00 2.43
1891 2027 3.636679 ACACTCCTATGCAGCTCTCTAA 58.363 45.455 0.00 0.00 0.00 2.10
2103 4389 9.585099 GCTTGGACAAAATATATCAACAAATCA 57.415 29.630 0.00 0.00 0.00 2.57
2119 4406 5.111293 ACAAATCAAGTCTTTGCCAAAGTG 58.889 37.500 16.33 8.28 39.52 3.16
2842 5135 1.688197 CATGGATATGTGGGGTTTGCC 59.312 52.381 0.00 0.00 0.00 4.52
2876 5169 4.067896 CCTGTTCACACTTGTTATCTGCT 58.932 43.478 0.00 0.00 0.00 4.24
2882 5175 7.661437 TGTTCACACTTGTTATCTGCTCTTATT 59.339 33.333 0.00 0.00 0.00 1.40
2919 5212 3.766051 GCCAGAGGAAAAACAGGAATCAT 59.234 43.478 0.00 0.00 0.00 2.45
2920 5213 4.221482 GCCAGAGGAAAAACAGGAATCATT 59.779 41.667 0.00 0.00 0.00 2.57
3037 5330 1.241990 TGGACCTCGTCACCTTCTCG 61.242 60.000 0.00 0.00 33.68 4.04
3154 5447 8.743085 TCTCTGATTCATTTAAAAGGATCCTG 57.257 34.615 17.02 1.21 0.00 3.86
4078 6371 4.966965 TTTACTTTCGGTGTTTGCTCAA 57.033 36.364 0.00 0.00 0.00 3.02
4138 6431 5.645497 CCAGGAAGAAGAATTGAAAGACGAT 59.355 40.000 0.00 0.00 0.00 3.73
4164 6457 2.841442 ACAGAAGTACCAAGGAGTGC 57.159 50.000 0.00 0.00 0.00 4.40
4354 6647 3.942439 CCTAAGCTAGCCGGGGCC 61.942 72.222 12.13 0.00 43.17 5.80
4618 6911 7.775561 TCAGTGTACGAGGATGCAGATATATAT 59.224 37.037 0.00 0.00 0.00 0.86
4716 7049 6.323739 GTCCATAAACCCATAAATGTGTCCAT 59.676 38.462 0.00 0.00 0.00 3.41
4862 7202 3.753193 GCCTGATGGGGATGCTTAAAGAT 60.753 47.826 0.00 0.00 35.12 2.40
4868 7208 5.828299 TGGGGATGCTTAAAGATAAAACG 57.172 39.130 0.00 0.00 0.00 3.60
5359 7961 1.382009 TGGGCATACCTGACGGCTA 60.382 57.895 0.00 0.00 41.11 3.93
5421 8023 7.577426 GCACAGTCATTCTTCCAAATATTCCAA 60.577 37.037 0.00 0.00 0.00 3.53
5481 8083 1.421268 ACATCTGCAACCACTCCAAGA 59.579 47.619 0.00 0.00 0.00 3.02
5512 8114 5.763876 AGGCCTTCTTTTGTCTGTATACT 57.236 39.130 0.00 0.00 0.00 2.12
5707 8309 5.705441 GGTGTTCAATTACTCCTCACATCAA 59.295 40.000 0.00 0.00 0.00 2.57
5710 8312 7.965107 GTGTTCAATTACTCCTCACATCAATTC 59.035 37.037 0.00 0.00 0.00 2.17
5960 8589 5.753721 AAGAGCTCCCCACTATGATATTC 57.246 43.478 10.93 0.00 0.00 1.75
6003 8632 6.055588 GTCCTAGTACATTGTATGCACCAAT 58.944 40.000 7.45 7.45 32.88 3.16
6004 8633 6.542370 GTCCTAGTACATTGTATGCACCAATT 59.458 38.462 10.01 6.03 30.28 2.32
6005 8634 7.067008 GTCCTAGTACATTGTATGCACCAATTT 59.933 37.037 10.01 7.51 30.28 1.82
6006 8635 8.268605 TCCTAGTACATTGTATGCACCAATTTA 58.731 33.333 10.01 6.68 30.28 1.40
6007 8636 8.342634 CCTAGTACATTGTATGCACCAATTTAC 58.657 37.037 19.74 19.74 36.44 2.01
6008 8637 7.938140 AGTACATTGTATGCACCAATTTACT 57.062 32.000 22.17 22.17 39.32 2.24
6009 8638 8.348285 AGTACATTGTATGCACCAATTTACTT 57.652 30.769 22.17 13.26 40.35 2.24
6010 8639 8.458843 AGTACATTGTATGCACCAATTTACTTC 58.541 33.333 22.17 8.36 40.35 3.01
6011 8640 7.466746 ACATTGTATGCACCAATTTACTTCT 57.533 32.000 10.01 0.00 30.28 2.85
6012 8641 7.315142 ACATTGTATGCACCAATTTACTTCTG 58.685 34.615 10.01 2.72 30.28 3.02
6013 8642 6.892658 TTGTATGCACCAATTTACTTCTGT 57.107 33.333 0.00 0.00 0.00 3.41
6014 8643 6.252967 TGTATGCACCAATTTACTTCTGTG 57.747 37.500 0.00 0.00 0.00 3.66
6015 8644 3.641437 TGCACCAATTTACTTCTGTGC 57.359 42.857 5.54 5.54 46.85 4.57
6016 8645 3.641437 GCACCAATTTACTTCTGTGCA 57.359 42.857 7.49 0.00 46.16 4.57
6017 8646 3.308530 GCACCAATTTACTTCTGTGCAC 58.691 45.455 10.75 10.75 46.16 4.57
6018 8647 3.554524 CACCAATTTACTTCTGTGCACG 58.445 45.455 13.13 7.36 0.00 5.34
6019 8648 3.249799 CACCAATTTACTTCTGTGCACGA 59.750 43.478 13.13 9.76 0.00 4.35
6147 8793 1.727467 GAGAGAGCTGGCTCGTCTC 59.273 63.158 22.74 22.74 46.90 3.36
6177 8823 1.063417 CAAAGGGCTCCAATCCTCCAT 60.063 52.381 0.00 0.00 32.02 3.41
6243 8889 2.432874 TGGACAGAAAGACCGTTTCAGA 59.567 45.455 0.68 0.00 34.56 3.27
6304 8950 5.455183 CCATGGTTCCATAACATCTCAGCTA 60.455 44.000 2.57 0.00 37.34 3.32
6306 8952 5.858381 TGGTTCCATAACATCTCAGCTATC 58.142 41.667 0.00 0.00 37.34 2.08
6459 9200 8.213518 TGATTCATTTTTGCAGTCTATACTCC 57.786 34.615 0.00 0.00 31.97 3.85
6467 9208 3.565902 TGCAGTCTATACTCCGATCACTG 59.434 47.826 0.00 0.00 31.97 3.66
6662 9403 4.647399 AGTGAGGCTCCTCTAATAGTTGAC 59.353 45.833 12.86 0.00 43.12 3.18
6780 9832 1.746470 ACCACCCTAAATAAGCACGC 58.254 50.000 0.00 0.00 0.00 5.34
6802 9854 7.378461 CACGCGTATGCATATGTATATGACATA 59.622 37.037 27.53 12.80 43.99 2.29
6842 9900 5.932455 TGGGGTATATTAGCCTACAAACAC 58.068 41.667 3.06 0.00 45.49 3.32
7088 10413 5.486526 AGAAAATGAACAACAAAAGTGGCA 58.513 33.333 0.00 0.00 0.00 4.92
7753 11244 9.897744 AAATATCAATAACCGTTTATGCTGATG 57.102 29.630 9.10 0.00 31.69 3.07
7982 11478 7.804843 TGTAATGGTTAAAAGAACGGAAAGA 57.195 32.000 0.00 0.00 0.00 2.52
7987 11483 7.804843 TGGTTAAAAGAACGGAAAGATGTAA 57.195 32.000 0.00 0.00 0.00 2.41
8000 11496 7.093465 ACGGAAAGATGTAATTCCTCTACTGAA 60.093 37.037 3.35 0.00 42.40 3.02
8244 11740 1.063266 AGTTGTTTTGCCTGGGAAGGA 60.063 47.619 0.00 0.00 0.00 3.36
8411 11907 8.132362 ACAGTTATCGACAGTGATCTTATTCTC 58.868 37.037 8.02 0.00 0.00 2.87
8433 11929 1.066858 TCTTCAGCGAAGGTAAGCCAG 60.067 52.381 15.15 0.00 39.82 4.85
8434 11930 0.036388 TTCAGCGAAGGTAAGCCAGG 60.036 55.000 0.00 0.00 35.08 4.45
8435 11931 1.192146 TCAGCGAAGGTAAGCCAGGT 61.192 55.000 0.00 0.00 35.08 4.00
8442 11938 1.568504 AGGTAAGCCAGGTCATCGAA 58.431 50.000 0.00 0.00 37.19 3.71
8497 11993 1.297664 CTGCTGCAGTGCTAAGATCC 58.702 55.000 21.21 0.00 0.00 3.36
8653 12153 0.455972 CAATTGAACGGCGGCGAAAT 60.456 50.000 38.93 27.34 0.00 2.17
8849 12360 8.752005 ATCAAAGCCATGTAATGTAATACAGT 57.248 30.769 0.00 0.00 44.81 3.55
8884 12408 8.209584 ACTATGTAAAATGCTCTCTGATGTGAT 58.790 33.333 0.00 0.00 0.00 3.06
8885 12409 6.673154 TGTAAAATGCTCTCTGATGTGATG 57.327 37.500 0.00 0.00 0.00 3.07
8886 12410 6.175471 TGTAAAATGCTCTCTGATGTGATGT 58.825 36.000 0.00 0.00 0.00 3.06
8887 12411 5.814764 AAAATGCTCTCTGATGTGATGTC 57.185 39.130 0.00 0.00 0.00 3.06
8888 12412 4.482952 AATGCTCTCTGATGTGATGTCA 57.517 40.909 0.00 0.00 0.00 3.58
8901 12425 5.897377 TGTGATGTCAGAAAGATCGAGTA 57.103 39.130 0.00 0.00 30.21 2.59
8915 12443 9.158233 GAAAGATCGAGTATATGTAGCTACTCT 57.842 37.037 23.84 13.84 41.01 3.24
8966 12494 7.645058 TTTCAGTTCAAGAAGTTCCTGAATT 57.355 32.000 17.68 12.09 38.36 2.17
8980 12508 3.683587 GAATTGGGTTCGCAGCGGC 62.684 63.158 16.42 8.37 0.00 6.53
9002 12530 4.796495 GGGGTGCTTACCTGCGGG 62.796 72.222 11.02 11.02 38.88 6.13
9068 12596 2.338785 GCCCTGCAACAAGGAGCTC 61.339 63.158 4.71 4.71 40.02 4.09
9073 12601 2.684843 GCAACAAGGAGCTCGGCAG 61.685 63.158 7.83 0.00 0.00 4.85
9075 12603 2.217038 AACAAGGAGCTCGGCAGGA 61.217 57.895 7.83 0.00 0.00 3.86
9219 12751 0.528684 GGATTGAGGAAGCCGACGAG 60.529 60.000 0.00 0.00 0.00 4.18
9227 12759 1.654954 GAAGCCGACGAGTAGCCAGA 61.655 60.000 0.00 0.00 0.00 3.86
9251 12783 0.322546 ATGTCCCGCTCAAGGTTTCC 60.323 55.000 0.00 0.00 0.00 3.13
9257 12789 1.000771 GCTCAAGGTTTCCCTCCCC 60.001 63.158 0.00 0.00 41.56 4.81
9270 12802 1.009183 CCCTCCCCTAGTAGAAACCCA 59.991 57.143 0.00 0.00 0.00 4.51
9296 12828 2.507407 TGGCACCCATAGTTTTCCTC 57.493 50.000 0.00 0.00 0.00 3.71
9297 12829 1.992557 TGGCACCCATAGTTTTCCTCT 59.007 47.619 0.00 0.00 0.00 3.69
9299 12831 2.280628 GCACCCATAGTTTTCCTCTCG 58.719 52.381 0.00 0.00 0.00 4.04
9324 12856 9.817365 CGTAAAATACGTGCTGTATATAGTACT 57.183 33.333 14.10 0.00 43.04 2.73
9358 12890 9.750125 AGGAAAACACAAAATATCTTTTCAGTC 57.250 29.630 0.00 0.00 34.07 3.51
9359 12891 8.978539 GGAAAACACAAAATATCTTTTCAGTCC 58.021 33.333 0.00 0.00 34.07 3.85
9360 12892 9.750125 GAAAACACAAAATATCTTTTCAGTCCT 57.250 29.630 0.00 0.00 32.21 3.85
9361 12893 9.533253 AAAACACAAAATATCTTTTCAGTCCTG 57.467 29.630 0.00 0.00 32.21 3.86
9362 12894 7.823745 ACACAAAATATCTTTTCAGTCCTGT 57.176 32.000 0.00 0.00 32.21 4.00
9363 12895 8.918202 ACACAAAATATCTTTTCAGTCCTGTA 57.082 30.769 0.00 0.00 32.21 2.74
9364 12896 9.349713 ACACAAAATATCTTTTCAGTCCTGTAA 57.650 29.630 0.00 0.00 32.21 2.41
9369 12901 8.425577 AATATCTTTTCAGTCCTGTAATGTCG 57.574 34.615 0.00 0.00 0.00 4.35
9370 12902 5.462530 TCTTTTCAGTCCTGTAATGTCGA 57.537 39.130 0.00 0.00 0.00 4.20
9371 12903 6.037786 TCTTTTCAGTCCTGTAATGTCGAT 57.962 37.500 0.00 0.00 0.00 3.59
9372 12904 5.869344 TCTTTTCAGTCCTGTAATGTCGATG 59.131 40.000 0.00 0.00 0.00 3.84
9373 12905 3.801114 TCAGTCCTGTAATGTCGATGG 57.199 47.619 0.00 0.00 0.00 3.51
9374 12906 2.159099 TCAGTCCTGTAATGTCGATGGC 60.159 50.000 0.00 0.00 0.00 4.40
9375 12907 2.111384 AGTCCTGTAATGTCGATGGCT 58.889 47.619 0.00 0.00 0.00 4.75
9376 12908 2.501723 AGTCCTGTAATGTCGATGGCTT 59.498 45.455 0.00 0.00 0.00 4.35
9377 12909 2.609459 GTCCTGTAATGTCGATGGCTTG 59.391 50.000 0.00 0.00 0.00 4.01
9378 12910 2.236146 TCCTGTAATGTCGATGGCTTGT 59.764 45.455 0.00 0.00 0.00 3.16
9379 12911 3.449377 TCCTGTAATGTCGATGGCTTGTA 59.551 43.478 0.00 0.00 0.00 2.41
9380 12912 4.081365 TCCTGTAATGTCGATGGCTTGTAA 60.081 41.667 0.00 0.00 0.00 2.41
9381 12913 4.271049 CCTGTAATGTCGATGGCTTGTAAG 59.729 45.833 0.00 0.00 0.00 2.34
9382 12914 4.827692 TGTAATGTCGATGGCTTGTAAGT 58.172 39.130 0.00 0.00 0.00 2.24
9383 12915 4.629634 TGTAATGTCGATGGCTTGTAAGTG 59.370 41.667 0.00 0.00 0.00 3.16
9384 12916 3.610040 ATGTCGATGGCTTGTAAGTGA 57.390 42.857 0.00 0.00 0.00 3.41
9385 12917 3.394674 TGTCGATGGCTTGTAAGTGAA 57.605 42.857 0.00 0.00 0.00 3.18
9386 12918 3.937814 TGTCGATGGCTTGTAAGTGAAT 58.062 40.909 0.00 0.00 0.00 2.57
9387 12919 4.323417 TGTCGATGGCTTGTAAGTGAATT 58.677 39.130 0.00 0.00 0.00 2.17
9388 12920 4.759693 TGTCGATGGCTTGTAAGTGAATTT 59.240 37.500 0.00 0.00 0.00 1.82
9389 12921 5.240623 TGTCGATGGCTTGTAAGTGAATTTT 59.759 36.000 0.00 0.00 0.00 1.82
9390 12922 6.149633 GTCGATGGCTTGTAAGTGAATTTTT 58.850 36.000 0.00 0.00 0.00 1.94
9391 12923 7.041030 TGTCGATGGCTTGTAAGTGAATTTTTA 60.041 33.333 0.00 0.00 0.00 1.52
9392 12924 7.968405 GTCGATGGCTTGTAAGTGAATTTTTAT 59.032 33.333 0.00 0.00 0.00 1.40
9393 12925 8.519526 TCGATGGCTTGTAAGTGAATTTTTATT 58.480 29.630 0.00 0.00 0.00 1.40
9394 12926 9.139174 CGATGGCTTGTAAGTGAATTTTTATTT 57.861 29.630 0.00 0.00 0.00 1.40
9507 13039 9.851686 AGTAATATTGTATCATTTCTGCCTCAA 57.148 29.630 0.00 0.00 0.00 3.02
9524 13056 9.806203 TCTGCCTCAAATTAAATAACATCATTG 57.194 29.630 0.00 0.00 0.00 2.82
9525 13057 9.590451 CTGCCTCAAATTAAATAACATCATTGT 57.410 29.630 0.00 0.00 37.82 2.71
9533 13065 9.462174 AATTAAATAACATCATTGTATGGTGCG 57.538 29.630 0.00 0.00 45.23 5.34
9534 13066 6.691754 AAATAACATCATTGTATGGTGCGA 57.308 33.333 0.00 0.00 45.23 5.10
9535 13067 5.929697 ATAACATCATTGTATGGTGCGAG 57.070 39.130 0.00 0.00 45.23 5.03
9536 13068 1.942657 ACATCATTGTATGGTGCGAGC 59.057 47.619 0.00 0.00 45.23 5.03
9537 13069 1.941975 CATCATTGTATGGTGCGAGCA 59.058 47.619 0.00 0.00 34.16 4.26
9538 13070 2.106477 TCATTGTATGGTGCGAGCAA 57.894 45.000 0.00 0.00 0.00 3.91
9539 13071 2.009051 TCATTGTATGGTGCGAGCAAG 58.991 47.619 0.00 0.00 0.00 4.01
9540 13072 1.064505 CATTGTATGGTGCGAGCAAGG 59.935 52.381 0.00 0.00 0.00 3.61
9541 13073 1.305219 TTGTATGGTGCGAGCAAGGC 61.305 55.000 0.00 0.00 0.00 4.35
9542 13074 1.745115 GTATGGTGCGAGCAAGGCA 60.745 57.895 0.00 0.00 38.25 4.75
9543 13075 1.450134 TATGGTGCGAGCAAGGCAG 60.450 57.895 0.00 0.00 41.83 4.85
9544 13076 2.184020 TATGGTGCGAGCAAGGCAGT 62.184 55.000 0.00 0.00 41.83 4.40
9545 13077 3.730761 GGTGCGAGCAAGGCAGTG 61.731 66.667 0.00 0.00 41.83 3.66
9546 13078 2.974698 GTGCGAGCAAGGCAGTGT 60.975 61.111 0.00 0.00 41.83 3.55
9547 13079 2.203195 TGCGAGCAAGGCAGTGTT 60.203 55.556 0.00 0.00 35.04 3.32
9548 13080 2.253452 GCGAGCAAGGCAGTGTTG 59.747 61.111 0.00 0.00 0.00 3.33
9549 13081 2.253758 GCGAGCAAGGCAGTGTTGA 61.254 57.895 0.00 0.00 0.00 3.18
9550 13082 1.864862 CGAGCAAGGCAGTGTTGAG 59.135 57.895 0.00 0.00 0.00 3.02
9551 13083 1.572085 CGAGCAAGGCAGTGTTGAGG 61.572 60.000 0.00 0.00 0.00 3.86
9552 13084 1.228367 AGCAAGGCAGTGTTGAGGG 60.228 57.895 0.00 0.00 0.00 4.30
9553 13085 2.924105 GCAAGGCAGTGTTGAGGGC 61.924 63.158 0.00 0.00 0.00 5.19
9554 13086 2.281761 AAGGCAGTGTTGAGGGCG 60.282 61.111 0.00 0.00 0.00 6.13
9555 13087 3.850098 AAGGCAGTGTTGAGGGCGG 62.850 63.158 0.00 0.00 0.00 6.13
9558 13090 4.641645 CAGTGTTGAGGGCGGCCA 62.642 66.667 31.59 7.51 0.00 5.36
9559 13091 4.335647 AGTGTTGAGGGCGGCCAG 62.336 66.667 31.59 0.00 0.00 4.85
9581 13113 2.008329 CTGCTCAGCTCAGTGAATTCC 58.992 52.381 2.27 0.00 0.00 3.01
9582 13114 1.627329 TGCTCAGCTCAGTGAATTCCT 59.373 47.619 2.27 0.00 0.00 3.36
9583 13115 2.278854 GCTCAGCTCAGTGAATTCCTC 58.721 52.381 2.27 0.00 0.00 3.71
9584 13116 2.538437 CTCAGCTCAGTGAATTCCTCG 58.462 52.381 2.27 0.00 0.00 4.63
9585 13117 2.165234 CTCAGCTCAGTGAATTCCTCGA 59.835 50.000 2.27 0.00 0.00 4.04
9586 13118 2.165234 TCAGCTCAGTGAATTCCTCGAG 59.835 50.000 5.13 5.13 0.00 4.04
9587 13119 1.134848 AGCTCAGTGAATTCCTCGAGC 60.135 52.381 22.75 22.75 44.83 5.03
9588 13120 1.933247 CTCAGTGAATTCCTCGAGCC 58.067 55.000 6.99 0.00 0.00 4.70
9589 13121 0.173481 TCAGTGAATTCCTCGAGCCG 59.827 55.000 6.99 0.00 0.00 5.52
9590 13122 1.153549 AGTGAATTCCTCGAGCCGC 60.154 57.895 6.99 0.05 0.00 6.53
9591 13123 2.202743 TGAATTCCTCGAGCCGCG 60.203 61.111 6.99 0.00 42.69 6.46
9592 13124 3.631127 GAATTCCTCGAGCCGCGC 61.631 66.667 6.99 0.00 40.61 6.86
9593 13125 4.451150 AATTCCTCGAGCCGCGCA 62.451 61.111 8.75 0.00 40.61 6.09
9594 13126 3.740128 AATTCCTCGAGCCGCGCAT 62.740 57.895 8.75 0.00 40.61 4.73
9595 13127 4.873129 TTCCTCGAGCCGCGCATC 62.873 66.667 8.75 0.50 40.61 3.91
9598 13130 3.918220 CTCGAGCCGCGCATCAAC 61.918 66.667 8.75 0.00 40.61 3.18
9599 13131 4.733371 TCGAGCCGCGCATCAACA 62.733 61.111 8.75 0.00 40.61 3.33
9600 13132 3.566853 CGAGCCGCGCATCAACAT 61.567 61.111 8.75 0.00 0.00 2.71
9601 13133 2.325857 GAGCCGCGCATCAACATC 59.674 61.111 8.75 0.00 0.00 3.06
9602 13134 3.173390 GAGCCGCGCATCAACATCC 62.173 63.158 8.75 0.00 0.00 3.51
9603 13135 4.256090 GCCGCGCATCAACATCCC 62.256 66.667 8.75 0.00 0.00 3.85
9604 13136 3.940640 CCGCGCATCAACATCCCG 61.941 66.667 8.75 0.00 0.00 5.14
9605 13137 4.596180 CGCGCATCAACATCCCGC 62.596 66.667 8.75 0.00 41.10 6.13
9606 13138 4.256090 GCGCATCAACATCCCGCC 62.256 66.667 0.30 0.00 38.84 6.13
9607 13139 3.585990 CGCATCAACATCCCGCCC 61.586 66.667 0.00 0.00 0.00 6.13
9608 13140 3.219198 GCATCAACATCCCGCCCC 61.219 66.667 0.00 0.00 0.00 5.80
9609 13141 2.901840 CATCAACATCCCGCCCCG 60.902 66.667 0.00 0.00 0.00 5.73
9622 13154 3.476419 CCCCGGCGGAATACCACT 61.476 66.667 30.79 0.00 35.59 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.465512 CATGCTGCCCAACGTCGC 62.466 66.667 0.00 0.00 0.00 5.19
51 52 8.630054 AAAAGGTTGCACATCAAATACTACTA 57.370 30.769 0.00 0.00 36.26 1.82
52 53 7.448469 AGAAAAGGTTGCACATCAAATACTACT 59.552 33.333 0.00 0.00 36.26 2.57
53 54 7.593825 AGAAAAGGTTGCACATCAAATACTAC 58.406 34.615 0.00 0.00 36.26 2.73
66 67 7.707624 AATCAATCAGATAGAAAAGGTTGCA 57.292 32.000 0.00 0.00 35.39 4.08
251 255 2.663196 GTGTCCACGGGAGAAGGG 59.337 66.667 0.00 0.00 29.39 3.95
338 347 2.525422 AGCACGATCGCATATGCTG 58.475 52.632 24.76 16.36 46.42 4.41
362 371 2.402564 TCCCCATCTCCTGATTCTGAC 58.597 52.381 0.00 0.00 0.00 3.51
377 386 8.142238 ACAAATCTCCCCTATATATATTCCCCA 58.858 37.037 0.00 0.00 0.00 4.96
378 387 8.582891 ACAAATCTCCCCTATATATATTCCCC 57.417 38.462 0.00 0.00 0.00 4.81
409 426 6.433093 TGCCGAGATTAGTAGCAGTATGATAA 59.567 38.462 0.00 0.00 39.49 1.75
411 428 4.767409 TGCCGAGATTAGTAGCAGTATGAT 59.233 41.667 0.00 0.00 39.69 2.45
412 429 4.023107 GTGCCGAGATTAGTAGCAGTATGA 60.023 45.833 0.00 0.00 39.69 2.15
413 430 4.022762 AGTGCCGAGATTAGTAGCAGTATG 60.023 45.833 0.00 0.00 35.42 2.39
414 431 4.022762 CAGTGCCGAGATTAGTAGCAGTAT 60.023 45.833 0.00 0.00 35.42 2.12
415 432 3.315470 CAGTGCCGAGATTAGTAGCAGTA 59.685 47.826 0.00 0.00 35.42 2.74
416 433 2.099921 CAGTGCCGAGATTAGTAGCAGT 59.900 50.000 0.00 0.00 37.59 4.40
417 434 2.099921 ACAGTGCCGAGATTAGTAGCAG 59.900 50.000 0.00 0.00 33.37 4.24
418 435 2.099263 GACAGTGCCGAGATTAGTAGCA 59.901 50.000 0.00 0.00 0.00 3.49
419 436 2.544069 GGACAGTGCCGAGATTAGTAGC 60.544 54.545 0.00 0.00 0.00 3.58
430 447 1.739562 GAGAGCAAGGACAGTGCCG 60.740 63.158 0.00 0.00 43.27 5.69
431 448 0.036022 AAGAGAGCAAGGACAGTGCC 59.964 55.000 0.00 0.00 43.27 5.01
454 471 2.223377 CAGAACAGCTTTAACCACGGAC 59.777 50.000 0.00 0.00 0.00 4.79
456 473 1.069227 GCAGAACAGCTTTAACCACGG 60.069 52.381 0.00 0.00 0.00 4.94
457 474 1.601903 TGCAGAACAGCTTTAACCACG 59.398 47.619 0.00 0.00 34.99 4.94
466 483 0.319900 CAGGTACGTGCAGAACAGCT 60.320 55.000 5.86 0.00 34.99 4.24
605 622 9.717942 GAGTTTATATTATCAGCAGTTCCATCT 57.282 33.333 0.00 0.00 0.00 2.90
615 637 5.989777 ACCCACACGAGTTTATATTATCAGC 59.010 40.000 0.00 0.00 0.00 4.26
626 648 0.253610 TCCACAACCCACACGAGTTT 59.746 50.000 0.00 0.00 0.00 2.66
759 793 8.324163 AGTGATCTAAACGCTCTTATGTTTTT 57.676 30.769 0.00 0.00 39.00 1.94
760 794 7.907214 AGTGATCTAAACGCTCTTATGTTTT 57.093 32.000 0.00 0.00 39.00 2.43
761 795 8.997621 TTAGTGATCTAAACGCTCTTATGTTT 57.002 30.769 0.00 0.00 41.00 2.83
762 796 9.601217 AATTAGTGATCTAAACGCTCTTATGTT 57.399 29.630 0.00 0.00 39.23 2.71
765 799 8.421784 TGGAATTAGTGATCTAAACGCTCTTAT 58.578 33.333 0.00 0.00 39.23 1.73
767 801 6.640518 TGGAATTAGTGATCTAAACGCTCTT 58.359 36.000 0.00 0.00 39.23 2.85
769 803 7.484035 AATGGAATTAGTGATCTAAACGCTC 57.516 36.000 0.00 0.00 39.23 5.03
770 804 6.201044 CGAATGGAATTAGTGATCTAAACGCT 59.799 38.462 0.00 0.00 36.07 5.07
772 806 7.464830 ACGAATGGAATTAGTGATCTAAACG 57.535 36.000 0.00 0.00 40.72 3.60
809 843 6.356186 AGGGAGTTAGTGATCTAAACGTTT 57.644 37.500 18.90 18.90 37.81 3.60
811 845 4.401837 GGAGGGAGTTAGTGATCTAAACGT 59.598 45.833 0.00 0.00 37.81 3.99
834 868 6.149474 CCCTGATGCCCTTATATTTCTTTACG 59.851 42.308 0.00 0.00 0.00 3.18
836 870 6.468651 CCCCCTGATGCCCTTATATTTCTTTA 60.469 42.308 0.00 0.00 0.00 1.85
837 871 5.397360 CCCCTGATGCCCTTATATTTCTTT 58.603 41.667 0.00 0.00 0.00 2.52
838 872 4.202716 CCCCCTGATGCCCTTATATTTCTT 60.203 45.833 0.00 0.00 0.00 2.52
839 873 3.334881 CCCCCTGATGCCCTTATATTTCT 59.665 47.826 0.00 0.00 0.00 2.52
840 874 3.701664 CCCCCTGATGCCCTTATATTTC 58.298 50.000 0.00 0.00 0.00 2.17
841 875 3.833559 CCCCCTGATGCCCTTATATTT 57.166 47.619 0.00 0.00 0.00 1.40
858 892 7.017850 TGGATTTTAGTATATTGGTACTCCCCC 59.982 40.741 0.00 0.00 36.39 5.40
859 893 7.881751 GTGGATTTTAGTATATTGGTACTCCCC 59.118 40.741 0.00 0.00 36.39 4.81
860 894 8.434392 TGTGGATTTTAGTATATTGGTACTCCC 58.566 37.037 0.00 0.00 36.39 4.30
861 895 9.269453 GTGTGGATTTTAGTATATTGGTACTCC 57.731 37.037 0.00 0.00 36.39 3.85
883 917 5.635280 AGTGACTATTCAACTGAATCGTGTG 59.365 40.000 12.74 2.62 43.17 3.82
884 918 5.635280 CAGTGACTATTCAACTGAATCGTGT 59.365 40.000 12.74 8.96 43.17 4.49
888 922 6.238320 GGATGCAGTGACTATTCAACTGAATC 60.238 42.308 16.76 16.76 43.17 2.52
903 937 3.253188 GCAAACTGTTTAGGATGCAGTGA 59.747 43.478 5.31 0.00 41.94 3.41
907 941 2.591923 TGGCAAACTGTTTAGGATGCA 58.408 42.857 14.06 0.00 39.77 3.96
911 945 4.374689 TGGTATGGCAAACTGTTTAGGA 57.625 40.909 5.31 0.00 0.00 2.94
939 973 2.352960 GCTTGCTTGGTAAGGAGAATCG 59.647 50.000 0.00 0.00 34.37 3.34
962 996 2.835156 TGTCCATGTCCTACCGATTTGA 59.165 45.455 0.00 0.00 0.00 2.69
1060 1094 1.134280 CGTGGCAGAGGATCCAGAAAT 60.134 52.381 15.82 0.00 33.66 2.17
1061 1095 0.250234 CGTGGCAGAGGATCCAGAAA 59.750 55.000 15.82 0.00 33.66 2.52
1062 1096 1.617018 CCGTGGCAGAGGATCCAGAA 61.617 60.000 15.82 0.00 33.66 3.02
1063 1097 2.060383 CCGTGGCAGAGGATCCAGA 61.060 63.158 15.82 0.00 33.66 3.86
1064 1098 2.503061 CCGTGGCAGAGGATCCAG 59.497 66.667 15.82 4.42 33.66 3.86
1068 1102 4.457496 CACGCCGTGGCAGAGGAT 62.457 66.667 9.90 0.00 42.06 3.24
1133 1173 0.611062 TGATATACGGAGGAGGCGGG 60.611 60.000 0.00 0.00 0.00 6.13
1197 1245 3.348647 TGTGAGTGAGAGAGAGAGAGG 57.651 52.381 0.00 0.00 0.00 3.69
1211 1259 1.956477 GGTCTGTGGCAAAATGTGAGT 59.044 47.619 0.00 0.00 0.00 3.41
1215 1263 1.133513 TGAGGGTCTGTGGCAAAATGT 60.134 47.619 0.00 0.00 0.00 2.71
1217 1265 1.145738 ACTGAGGGTCTGTGGCAAAAT 59.854 47.619 0.00 0.00 0.00 1.82
1218 1266 0.550914 ACTGAGGGTCTGTGGCAAAA 59.449 50.000 0.00 0.00 0.00 2.44
1236 1297 3.499737 CCTTCGTCCATGGCGCAC 61.500 66.667 19.64 7.69 0.00 5.34
1400 1462 3.496331 GAGGAGAGGAGAAGAATCGGAT 58.504 50.000 0.00 0.00 0.00 4.18
1604 1731 1.822186 ACACAAACCACCGAGTGCC 60.822 57.895 0.00 0.00 35.47 5.01
1609 1736 1.313772 CATTCCACACAAACCACCGA 58.686 50.000 0.00 0.00 0.00 4.69
1611 1738 1.754226 ACACATTCCACACAAACCACC 59.246 47.619 0.00 0.00 0.00 4.61
1619 1746 6.922957 ACATAACAAATGAACACATTCCACAC 59.077 34.615 0.00 0.00 33.78 3.82
1638 1765 8.494016 AATTGAGCCTCACTTAGTTACATAAC 57.506 34.615 0.00 0.00 36.46 1.89
1643 1771 6.072452 AGCAAAATTGAGCCTCACTTAGTTAC 60.072 38.462 0.00 0.00 0.00 2.50
1756 1888 5.277490 GCTCCAGTTTGCAAAATTTCCTTTC 60.277 40.000 14.67 0.00 0.00 2.62
1789 1921 1.341285 TGATCATTGCCCTTCACCTGG 60.341 52.381 0.00 0.00 0.00 4.45
1795 1927 1.064654 GAACGCTGATCATTGCCCTTC 59.935 52.381 0.00 0.00 0.00 3.46
1812 1948 9.350357 GAAAGGATTTTAGGATTAAAACGGAAC 57.650 33.333 0.00 0.00 39.27 3.62
1886 2022 9.838339 ATGTACTATCATCCTTGGTTTTTAGAG 57.162 33.333 0.00 0.00 0.00 2.43
1890 2026 9.533831 AAAGATGTACTATCATCCTTGGTTTTT 57.466 29.630 0.00 0.00 43.46 1.94
1891 2027 9.533831 AAAAGATGTACTATCATCCTTGGTTTT 57.466 29.630 0.00 2.04 43.46 2.43
2103 4389 2.031870 GGTCCACTTTGGCAAAGACTT 58.968 47.619 38.62 19.35 41.02 3.01
2119 4406 1.550976 CCCTGAGTAAGACACTGGTCC 59.449 57.143 0.00 0.00 45.48 4.46
2408 4701 0.531311 TACTGAGCCGCGATACTCGA 60.531 55.000 8.23 2.17 43.74 4.04
2418 4711 3.129462 TCTCTTGAACAGATACTGAGCCG 59.871 47.826 5.76 0.00 35.18 5.52
2842 5135 3.073678 TGTGAACAGGTCCATCAATTCG 58.926 45.455 0.00 0.00 0.00 3.34
2919 5212 5.182190 TCTGTTATGCCGCTGTTTATTGAAA 59.818 36.000 0.00 0.00 0.00 2.69
2920 5213 4.697828 TCTGTTATGCCGCTGTTTATTGAA 59.302 37.500 0.00 0.00 0.00 2.69
3154 5447 1.503542 CCTGCGTTCAACATCTGCC 59.496 57.895 0.00 0.00 0.00 4.85
4078 6371 3.999663 CTCGATCAGCTGAAACTTTTCCT 59.000 43.478 22.50 0.00 36.36 3.36
4138 6431 5.221843 ACTCCTTGGTACTTCTGTAATTGCA 60.222 40.000 0.00 0.00 0.00 4.08
4354 6647 2.973899 CTCCCACTGACCCTCACG 59.026 66.667 0.00 0.00 0.00 4.35
4618 6911 4.624843 GCACTGAAGGGATCATCAAAGAGA 60.625 45.833 0.00 0.00 37.44 3.10
4657 6950 0.598065 CCTTGAAAAGTTGGGCTCCG 59.402 55.000 0.00 0.00 44.25 4.63
4716 7049 8.484799 GTGTTCGAATCATATGCGACTAAATTA 58.515 33.333 0.00 0.00 33.33 1.40
4862 7202 7.988028 TGATGGGTCACATACAATATCGTTTTA 59.012 33.333 0.00 0.00 40.72 1.52
4868 7208 7.498900 TCAACTTGATGGGTCACATACAATATC 59.501 37.037 0.00 0.00 40.72 1.63
5086 7688 1.133136 ACTATGGGCTCCGACTATGGT 60.133 52.381 0.00 0.00 0.00 3.55
5272 7874 4.279169 TGTCAGCCTTCCTTTTTCATTGAG 59.721 41.667 0.00 0.00 0.00 3.02
5359 7961 0.670162 GCTAATGCGCCACCATGAAT 59.330 50.000 4.18 0.00 0.00 2.57
5421 8023 4.202441 CCATCCAATAGTTGCTTGCTACT 58.798 43.478 13.40 13.40 0.00 2.57
5481 8083 4.740902 ACAAAAGAAGGCCTAATCCAACT 58.259 39.130 5.16 0.00 0.00 3.16
5512 8114 6.982852 GTGCACTTCCTATAGATAGCACTAA 58.017 40.000 10.32 0.00 45.41 2.24
5707 8309 2.375174 TGGGAACAAGGCAGTACAGAAT 59.625 45.455 0.00 0.00 37.44 2.40
5710 8312 1.523758 GTGGGAACAAGGCAGTACAG 58.476 55.000 0.00 0.00 46.06 2.74
5863 8492 2.548057 CCACGCAACTTGTGACATAACT 59.452 45.455 9.34 0.00 39.73 2.24
5960 8589 7.819900 ACTAGGACAAGTTAAATCTAGTGCAAG 59.180 37.037 0.00 0.00 36.89 4.01
5990 8619 6.676950 CACAGAAGTAAATTGGTGCATACAA 58.323 36.000 8.89 8.89 0.00 2.41
6003 8632 6.428465 TGGAATTAATCGTGCACAGAAGTAAA 59.572 34.615 18.64 8.64 0.00 2.01
6004 8633 5.935206 TGGAATTAATCGTGCACAGAAGTAA 59.065 36.000 18.64 15.82 0.00 2.24
6005 8634 5.483811 TGGAATTAATCGTGCACAGAAGTA 58.516 37.500 18.64 8.96 0.00 2.24
6006 8635 4.323417 TGGAATTAATCGTGCACAGAAGT 58.677 39.130 18.64 9.84 0.00 3.01
6007 8636 4.201851 CCTGGAATTAATCGTGCACAGAAG 60.202 45.833 18.64 0.00 0.00 2.85
6008 8637 3.689161 CCTGGAATTAATCGTGCACAGAA 59.311 43.478 18.64 4.93 0.00 3.02
6009 8638 3.055458 TCCTGGAATTAATCGTGCACAGA 60.055 43.478 18.64 15.15 0.00 3.41
6010 8639 3.270027 TCCTGGAATTAATCGTGCACAG 58.730 45.455 18.64 9.95 0.00 3.66
6011 8640 3.342377 TCCTGGAATTAATCGTGCACA 57.658 42.857 18.64 4.45 0.00 4.57
6012 8641 3.487544 GCTTCCTGGAATTAATCGTGCAC 60.488 47.826 10.03 6.82 0.00 4.57
6013 8642 2.682856 GCTTCCTGGAATTAATCGTGCA 59.317 45.455 10.03 0.00 0.00 4.57
6014 8643 2.033424 GGCTTCCTGGAATTAATCGTGC 59.967 50.000 10.03 7.02 0.00 5.34
6015 8644 3.278574 TGGCTTCCTGGAATTAATCGTG 58.721 45.455 10.03 0.00 0.00 4.35
6016 8645 3.644966 TGGCTTCCTGGAATTAATCGT 57.355 42.857 10.03 0.00 0.00 3.73
6017 8646 5.765182 ACTTATGGCTTCCTGGAATTAATCG 59.235 40.000 10.03 0.00 0.00 3.34
6018 8647 6.515696 GCACTTATGGCTTCCTGGAATTAATC 60.516 42.308 10.03 0.00 0.00 1.75
6019 8648 5.302823 GCACTTATGGCTTCCTGGAATTAAT 59.697 40.000 10.03 6.38 0.00 1.40
6129 8775 0.748005 AGAGACGAGCCAGCTCTCTC 60.748 60.000 25.53 25.53 41.77 3.20
6147 8793 2.892852 TGGAGCCCTTTGAATTTGTGAG 59.107 45.455 0.00 0.00 0.00 3.51
6177 8823 3.591023 TGTAAGTGATTCCGCGAAATGA 58.409 40.909 8.23 0.00 0.00 2.57
6243 8889 7.319646 TGTTAACAAGACTGATGTTTGCTTTT 58.680 30.769 5.64 0.00 41.11 2.27
6304 8950 1.446907 CTGAAGCAAAGCCACTCGAT 58.553 50.000 0.00 0.00 0.00 3.59
6306 8952 1.871772 CCTGAAGCAAAGCCACTCG 59.128 57.895 0.00 0.00 0.00 4.18
6410 9056 8.845227 TCAACTATAACTTGTCTGCATGAAAAA 58.155 29.630 0.00 0.00 0.00 1.94
6459 9200 2.489329 AGCCACCAAAAATCAGTGATCG 59.511 45.455 5.98 0.00 33.21 3.69
6467 9208 3.002553 CAGTTTTGCAGCCACCAAAAATC 59.997 43.478 7.93 0.00 41.98 2.17
6662 9403 4.418328 TTTGGGGGCCGGTGATCG 62.418 66.667 1.90 0.00 38.88 3.69
6904 9962 6.115446 TCTAATATGAGTGTTGCTTGGGAAG 58.885 40.000 0.00 0.00 0.00 3.46
6989 10057 5.728471 ACAAGTCATGATTAGTCTGTCCTG 58.272 41.667 0.00 0.00 0.00 3.86
7088 10413 6.830873 AACTCAGCAAGCATTCTTTTATCT 57.169 33.333 0.00 0.00 0.00 1.98
7623 11112 1.978542 CTCTCTTTTGCTGCACATGC 58.021 50.000 0.00 0.00 42.50 4.06
7982 11478 7.604164 CACTTGTGTTCAGTAGAGGAATTACAT 59.396 37.037 0.00 0.00 30.10 2.29
7987 11483 5.552870 ACACTTGTGTTCAGTAGAGGAAT 57.447 39.130 0.00 0.00 0.00 3.01
8000 11496 5.348164 GCCAAAAGAAATGTACACTTGTGT 58.652 37.500 11.30 11.30 29.82 3.72
8178 11674 1.608590 CCCATTTTCGACAACTGCAGT 59.391 47.619 15.25 15.25 0.00 4.40
8244 11740 4.256920 ACATTGCTTCGCTTCAGTAGAAT 58.743 39.130 0.00 0.00 32.31 2.40
8411 11907 0.992802 GCTTACCTTCGCTGAAGACG 59.007 55.000 16.51 6.49 41.71 4.18
8433 11929 6.451064 AATATTTTGGGTTCTTCGATGACC 57.549 37.500 0.00 6.04 0.00 4.02
8434 11930 9.665264 GATAAATATTTTGGGTTCTTCGATGAC 57.335 33.333 5.91 0.00 0.00 3.06
8435 11931 8.846211 GGATAAATATTTTGGGTTCTTCGATGA 58.154 33.333 5.91 0.00 0.00 2.92
8497 11993 0.435008 GCTCAGCACAAACGAGTACG 59.565 55.000 0.00 0.00 45.75 3.67
8653 12153 0.251916 CCTAGTTGGGTTCATGCCGA 59.748 55.000 0.00 0.00 0.00 5.54
8663 12163 3.127533 GCTGTGCGCCTAGTTGGG 61.128 66.667 4.18 0.00 36.00 4.12
8846 12357 7.492669 AGCATTTTACATAGTGCTACTGTACTG 59.507 37.037 0.00 0.00 45.35 2.74
8849 12360 7.782049 AGAGCATTTTACATAGTGCTACTGTA 58.218 34.615 0.00 0.00 46.98 2.74
8867 12391 4.161754 TCTGACATCACATCAGAGAGCATT 59.838 41.667 0.59 0.00 46.01 3.56
8884 12408 7.445707 AGCTACATATACTCGATCTTTCTGACA 59.554 37.037 0.00 0.00 0.00 3.58
8885 12409 7.812648 AGCTACATATACTCGATCTTTCTGAC 58.187 38.462 0.00 0.00 0.00 3.51
8886 12410 7.987750 AGCTACATATACTCGATCTTTCTGA 57.012 36.000 0.00 0.00 0.00 3.27
8887 12411 8.941977 AGTAGCTACATATACTCGATCTTTCTG 58.058 37.037 25.28 0.00 0.00 3.02
8888 12412 9.158233 GAGTAGCTACATATACTCGATCTTTCT 57.842 37.037 25.28 0.00 38.77 2.52
8901 12425 3.632604 ACGCACACAGAGTAGCTACATAT 59.367 43.478 25.28 5.17 0.00 1.78
9087 12615 1.923204 CTTGCGCTCTGATCAGTGTAC 59.077 52.381 21.92 15.21 0.00 2.90
9098 12626 1.519455 GGTACGATGCTTGCGCTCT 60.519 57.895 9.73 0.00 36.97 4.09
9219 12751 0.462759 GGGACATGCTGTCTGGCTAC 60.463 60.000 13.59 0.21 46.19 3.58
9227 12759 1.376424 CTTGAGCGGGACATGCTGT 60.376 57.895 0.00 0.00 44.18 4.40
9251 12783 2.563039 TGGGTTTCTACTAGGGGAGG 57.437 55.000 0.00 0.00 0.00 4.30
9257 12789 7.416326 GGTGCCATATTTTTGGGTTTCTACTAG 60.416 40.741 0.00 0.00 37.24 2.57
9332 12864 9.750125 GACTGAAAAGATATTTTGTGTTTTCCT 57.250 29.630 2.13 0.00 36.64 3.36
9333 12865 8.978539 GGACTGAAAAGATATTTTGTGTTTTCC 58.021 33.333 2.13 0.00 36.64 3.13
9334 12866 9.750125 AGGACTGAAAAGATATTTTGTGTTTTC 57.250 29.630 2.13 0.00 37.54 2.29
9335 12867 9.533253 CAGGACTGAAAAGATATTTTGTGTTTT 57.467 29.630 2.13 0.00 0.00 2.43
9336 12868 8.695456 ACAGGACTGAAAAGATATTTTGTGTTT 58.305 29.630 2.13 0.00 0.00 2.83
9337 12869 8.237811 ACAGGACTGAAAAGATATTTTGTGTT 57.762 30.769 2.13 0.00 0.00 3.32
9338 12870 7.823745 ACAGGACTGAAAAGATATTTTGTGT 57.176 32.000 2.13 1.61 0.00 3.72
9343 12875 8.883731 CGACATTACAGGACTGAAAAGATATTT 58.116 33.333 6.29 0.00 0.00 1.40
9344 12876 8.258007 TCGACATTACAGGACTGAAAAGATATT 58.742 33.333 6.29 0.00 0.00 1.28
9345 12877 7.782049 TCGACATTACAGGACTGAAAAGATAT 58.218 34.615 6.29 0.00 0.00 1.63
9346 12878 7.165460 TCGACATTACAGGACTGAAAAGATA 57.835 36.000 6.29 0.00 0.00 1.98
9347 12879 6.037786 TCGACATTACAGGACTGAAAAGAT 57.962 37.500 6.29 0.00 0.00 2.40
9348 12880 5.462530 TCGACATTACAGGACTGAAAAGA 57.537 39.130 6.29 0.00 0.00 2.52
9349 12881 5.063944 CCATCGACATTACAGGACTGAAAAG 59.936 44.000 6.29 0.00 0.00 2.27
9350 12882 4.935205 CCATCGACATTACAGGACTGAAAA 59.065 41.667 6.29 0.73 0.00 2.29
9351 12883 4.503910 CCATCGACATTACAGGACTGAAA 58.496 43.478 6.29 0.00 0.00 2.69
9352 12884 3.678806 GCCATCGACATTACAGGACTGAA 60.679 47.826 6.29 0.00 0.00 3.02
9353 12885 2.159099 GCCATCGACATTACAGGACTGA 60.159 50.000 6.29 0.00 0.00 3.41
9354 12886 2.159043 AGCCATCGACATTACAGGACTG 60.159 50.000 0.00 0.00 0.00 3.51
9355 12887 2.111384 AGCCATCGACATTACAGGACT 58.889 47.619 0.00 0.00 0.00 3.85
9356 12888 2.604046 AGCCATCGACATTACAGGAC 57.396 50.000 0.00 0.00 0.00 3.85
9357 12889 2.236146 ACAAGCCATCGACATTACAGGA 59.764 45.455 0.00 0.00 0.00 3.86
9358 12890 2.632377 ACAAGCCATCGACATTACAGG 58.368 47.619 0.00 0.00 0.00 4.00
9359 12891 4.870426 ACTTACAAGCCATCGACATTACAG 59.130 41.667 0.00 0.00 0.00 2.74
9360 12892 4.629634 CACTTACAAGCCATCGACATTACA 59.370 41.667 0.00 0.00 0.00 2.41
9361 12893 4.868171 TCACTTACAAGCCATCGACATTAC 59.132 41.667 0.00 0.00 0.00 1.89
9362 12894 5.079689 TCACTTACAAGCCATCGACATTA 57.920 39.130 0.00 0.00 0.00 1.90
9363 12895 3.937814 TCACTTACAAGCCATCGACATT 58.062 40.909 0.00 0.00 0.00 2.71
9364 12896 3.610040 TCACTTACAAGCCATCGACAT 57.390 42.857 0.00 0.00 0.00 3.06
9365 12897 3.394674 TTCACTTACAAGCCATCGACA 57.605 42.857 0.00 0.00 0.00 4.35
9366 12898 4.946784 AATTCACTTACAAGCCATCGAC 57.053 40.909 0.00 0.00 0.00 4.20
9367 12899 5.957842 AAAATTCACTTACAAGCCATCGA 57.042 34.783 0.00 0.00 0.00 3.59
9368 12900 8.687824 AATAAAAATTCACTTACAAGCCATCG 57.312 30.769 0.00 0.00 0.00 3.84
9481 13013 9.851686 TTGAGGCAGAAATGATACAATATTACT 57.148 29.630 0.00 0.00 0.00 2.24
9498 13030 9.806203 CAATGATGTTATTTAATTTGAGGCAGA 57.194 29.630 0.00 0.00 0.00 4.26
9499 13031 9.590451 ACAATGATGTTATTTAATTTGAGGCAG 57.410 29.630 0.00 0.00 35.91 4.85
9507 13039 9.462174 CGCACCATACAATGATGTTATTTAATT 57.538 29.630 0.00 0.00 41.05 1.40
9508 13040 8.845227 TCGCACCATACAATGATGTTATTTAAT 58.155 29.630 0.00 0.00 41.05 1.40
9509 13041 8.214721 TCGCACCATACAATGATGTTATTTAA 57.785 30.769 0.00 0.00 41.05 1.52
9510 13042 7.519809 GCTCGCACCATACAATGATGTTATTTA 60.520 37.037 0.00 0.00 41.05 1.40
9511 13043 6.691754 TCGCACCATACAATGATGTTATTT 57.308 33.333 0.00 0.00 41.05 1.40
9512 13044 5.277974 GCTCGCACCATACAATGATGTTATT 60.278 40.000 0.00 0.00 41.05 1.40
9513 13045 4.214119 GCTCGCACCATACAATGATGTTAT 59.786 41.667 0.00 0.00 41.05 1.89
9514 13046 3.559655 GCTCGCACCATACAATGATGTTA 59.440 43.478 0.00 0.00 41.05 2.41
9515 13047 2.355756 GCTCGCACCATACAATGATGTT 59.644 45.455 0.00 0.00 41.05 2.71
9516 13048 1.942657 GCTCGCACCATACAATGATGT 59.057 47.619 0.00 0.00 43.74 3.06
9517 13049 1.941975 TGCTCGCACCATACAATGATG 59.058 47.619 0.00 0.00 0.00 3.07
9518 13050 2.330440 TGCTCGCACCATACAATGAT 57.670 45.000 0.00 0.00 0.00 2.45
9519 13051 2.009051 CTTGCTCGCACCATACAATGA 58.991 47.619 0.00 0.00 0.00 2.57
9520 13052 1.064505 CCTTGCTCGCACCATACAATG 59.935 52.381 0.00 0.00 0.00 2.82
9521 13053 1.382522 CCTTGCTCGCACCATACAAT 58.617 50.000 0.00 0.00 0.00 2.71
9522 13054 1.305219 GCCTTGCTCGCACCATACAA 61.305 55.000 0.00 0.00 0.00 2.41
9523 13055 1.745115 GCCTTGCTCGCACCATACA 60.745 57.895 0.00 0.00 0.00 2.29
9524 13056 1.709147 CTGCCTTGCTCGCACCATAC 61.709 60.000 0.00 0.00 31.61 2.39
9525 13057 1.450134 CTGCCTTGCTCGCACCATA 60.450 57.895 0.00 0.00 31.61 2.74
9526 13058 2.749044 CTGCCTTGCTCGCACCAT 60.749 61.111 0.00 0.00 31.61 3.55
9527 13059 4.254709 ACTGCCTTGCTCGCACCA 62.255 61.111 0.00 0.00 31.61 4.17
9528 13060 3.730761 CACTGCCTTGCTCGCACC 61.731 66.667 0.00 0.00 31.61 5.01
9529 13061 2.546494 AACACTGCCTTGCTCGCAC 61.546 57.895 0.00 0.00 31.61 5.34
9530 13062 2.203195 AACACTGCCTTGCTCGCA 60.203 55.556 0.00 0.00 34.41 5.10
9531 13063 2.180131 CTCAACACTGCCTTGCTCGC 62.180 60.000 0.00 0.00 0.00 5.03
9532 13064 1.572085 CCTCAACACTGCCTTGCTCG 61.572 60.000 0.00 0.00 0.00 5.03
9533 13065 1.239968 CCCTCAACACTGCCTTGCTC 61.240 60.000 0.00 0.00 0.00 4.26
9534 13066 1.228367 CCCTCAACACTGCCTTGCT 60.228 57.895 0.00 0.00 0.00 3.91
9535 13067 2.924105 GCCCTCAACACTGCCTTGC 61.924 63.158 0.00 0.00 0.00 4.01
9536 13068 2.620112 CGCCCTCAACACTGCCTTG 61.620 63.158 0.00 0.00 0.00 3.61
9537 13069 2.281761 CGCCCTCAACACTGCCTT 60.282 61.111 0.00 0.00 0.00 4.35
9538 13070 4.335647 CCGCCCTCAACACTGCCT 62.336 66.667 0.00 0.00 0.00 4.75
9541 13073 4.641645 TGGCCGCCCTCAACACTG 62.642 66.667 7.03 0.00 0.00 3.66
9542 13074 4.335647 CTGGCCGCCCTCAACACT 62.336 66.667 7.03 0.00 0.00 3.55
9561 13093 2.008329 GGAATTCACTGAGCTGAGCAG 58.992 52.381 7.39 0.00 39.26 4.24
9562 13094 1.627329 AGGAATTCACTGAGCTGAGCA 59.373 47.619 7.39 0.00 0.00 4.26
9563 13095 2.278854 GAGGAATTCACTGAGCTGAGC 58.721 52.381 7.93 0.00 0.00 4.26
9564 13096 2.165234 TCGAGGAATTCACTGAGCTGAG 59.835 50.000 7.93 0.00 0.00 3.35
9565 13097 2.165234 CTCGAGGAATTCACTGAGCTGA 59.835 50.000 3.91 0.00 0.00 4.26
9566 13098 2.538437 CTCGAGGAATTCACTGAGCTG 58.462 52.381 3.91 0.00 0.00 4.24
9567 13099 1.134848 GCTCGAGGAATTCACTGAGCT 60.135 52.381 25.46 8.15 44.03 4.09
9568 13100 1.285578 GCTCGAGGAATTCACTGAGC 58.714 55.000 21.46 21.46 41.57 4.26
9569 13101 1.800655 CGGCTCGAGGAATTCACTGAG 60.801 57.143 15.58 11.03 0.00 3.35
9570 13102 0.173481 CGGCTCGAGGAATTCACTGA 59.827 55.000 15.58 0.39 0.00 3.41
9571 13103 1.424493 GCGGCTCGAGGAATTCACTG 61.424 60.000 15.58 1.38 0.00 3.66
9572 13104 1.153549 GCGGCTCGAGGAATTCACT 60.154 57.895 15.58 1.88 0.00 3.41
9573 13105 2.517450 CGCGGCTCGAGGAATTCAC 61.517 63.158 15.58 0.00 41.67 3.18
9574 13106 2.202743 CGCGGCTCGAGGAATTCA 60.203 61.111 15.58 0.00 41.67 2.57
9575 13107 3.631127 GCGCGGCTCGAGGAATTC 61.631 66.667 15.58 0.00 41.67 2.17
9576 13108 3.740128 ATGCGCGGCTCGAGGAATT 62.740 57.895 15.58 0.00 41.67 2.17
9577 13109 4.227134 ATGCGCGGCTCGAGGAAT 62.227 61.111 15.58 0.00 41.67 3.01
9578 13110 4.873129 GATGCGCGGCTCGAGGAA 62.873 66.667 15.58 0.00 41.67 3.36
9581 13113 3.918220 GTTGATGCGCGGCTCGAG 61.918 66.667 8.83 8.45 41.67 4.04
9582 13114 4.733371 TGTTGATGCGCGGCTCGA 62.733 61.111 8.83 0.00 41.67 4.04
9583 13115 3.497407 GATGTTGATGCGCGGCTCG 62.497 63.158 8.83 0.00 42.12 5.03
9584 13116 2.325857 GATGTTGATGCGCGGCTC 59.674 61.111 8.83 0.00 0.00 4.70
9585 13117 3.204827 GGATGTTGATGCGCGGCT 61.205 61.111 8.83 0.00 0.00 5.52
9586 13118 4.256090 GGGATGTTGATGCGCGGC 62.256 66.667 8.83 0.00 0.00 6.53
9587 13119 3.940640 CGGGATGTTGATGCGCGG 61.941 66.667 8.83 0.00 34.84 6.46
9588 13120 4.596180 GCGGGATGTTGATGCGCG 62.596 66.667 0.00 0.00 40.35 6.86
9589 13121 4.256090 GGCGGGATGTTGATGCGC 62.256 66.667 0.00 0.00 0.00 6.09
9590 13122 3.585990 GGGCGGGATGTTGATGCG 61.586 66.667 0.00 0.00 0.00 4.73
9591 13123 3.219198 GGGGCGGGATGTTGATGC 61.219 66.667 0.00 0.00 0.00 3.91
9592 13124 2.901840 CGGGGCGGGATGTTGATG 60.902 66.667 0.00 0.00 0.00 3.07
9593 13125 4.189580 CCGGGGCGGGATGTTGAT 62.190 66.667 0.00 0.00 44.15 2.57
9605 13137 3.476419 AGTGGTATTCCGCCGGGG 61.476 66.667 12.43 12.43 44.61 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.