Multiple sequence alignment - TraesCS2A01G450600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G450600 chr2A 100.000 3750 0 0 1 3750 699979311 699983060 0.000000e+00 6926.0
1 TraesCS2A01G450600 chr2B 93.487 2303 103 20 637 2909 668681919 668684204 0.000000e+00 3378.0
2 TraesCS2A01G450600 chr2B 91.713 181 12 3 223 402 570204263 570204085 8.040000e-62 248.0
3 TraesCS2A01G450600 chr2B 100.000 32 0 0 446 477 94035599 94035568 4.040000e-05 60.2
4 TraesCS2A01G450600 chr2D 94.622 2157 70 20 772 2905 559830827 559832960 0.000000e+00 3299.0
5 TraesCS2A01G450600 chr2D 90.272 771 72 2 2982 3750 399428245 399427476 0.000000e+00 1005.0
6 TraesCS2A01G450600 chr2D 90.948 232 14 4 1 228 559829073 559829301 4.710000e-79 305.0
7 TraesCS2A01G450600 chr2D 93.038 158 11 0 623 780 559830254 559830411 8.100000e-57 231.0
8 TraesCS2A01G450600 chr2D 93.750 48 2 1 550 596 559830202 559830249 1.870000e-08 71.3
9 TraesCS2A01G450600 chr6D 90.568 774 71 1 2979 3750 7446941 7447714 0.000000e+00 1024.0
10 TraesCS2A01G450600 chr6D 92.045 176 11 3 231 404 237759811 237759637 1.040000e-60 244.0
11 TraesCS2A01G450600 chr6D 91.477 176 12 3 231 404 237773671 237773497 4.840000e-59 239.0
12 TraesCS2A01G450600 chr4A 90.181 774 74 1 2979 3750 71082662 71081889 0.000000e+00 1007.0
13 TraesCS2A01G450600 chr1A 90.298 773 70 3 2980 3750 551301404 551302173 0.000000e+00 1007.0
14 TraesCS2A01G450600 chr5A 89.911 783 76 2 2971 3750 521835975 521835193 0.000000e+00 1005.0
15 TraesCS2A01G450600 chr5D 90.000 780 72 4 2973 3750 382082680 382081905 0.000000e+00 1003.0
16 TraesCS2A01G450600 chr7D 89.974 778 74 3 2974 3748 583073510 583072734 0.000000e+00 1002.0
17 TraesCS2A01G450600 chr7D 89.885 781 76 2 2973 3750 635995956 635996736 0.000000e+00 1002.0
18 TraesCS2A01G450600 chr7D 79.569 1067 190 20 1651 2712 629310879 629311922 0.000000e+00 737.0
19 TraesCS2A01G450600 chr7D 91.525 177 12 3 230 404 112660307 112660482 1.350000e-59 241.0
20 TraesCS2A01G450600 chr7D 91.477 176 12 3 231 404 112665157 112665331 4.840000e-59 239.0
21 TraesCS2A01G450600 chr1D 89.642 782 77 3 2972 3750 365752087 365751307 0.000000e+00 992.0
22 TraesCS2A01G450600 chr3D 91.477 176 12 3 231 404 7084142 7083968 4.840000e-59 239.0
23 TraesCS2A01G450600 chr6A 90.960 177 13 3 230 404 73442919 73442744 6.260000e-58 235.0
24 TraesCS2A01G450600 chr7B 89.944 179 14 4 228 404 576006180 576006356 1.050000e-55 228.0
25 TraesCS2A01G450600 chr3A 89.017 173 16 3 230 401 647610475 647610305 1.060000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G450600 chr2A 699979311 699983060 3749 False 6926.000 6926 100.0000 1 3750 1 chr2A.!!$F1 3749
1 TraesCS2A01G450600 chr2B 668681919 668684204 2285 False 3378.000 3378 93.4870 637 2909 1 chr2B.!!$F1 2272
2 TraesCS2A01G450600 chr2D 399427476 399428245 769 True 1005.000 1005 90.2720 2982 3750 1 chr2D.!!$R1 768
3 TraesCS2A01G450600 chr2D 559829073 559832960 3887 False 976.575 3299 93.0895 1 2905 4 chr2D.!!$F1 2904
4 TraesCS2A01G450600 chr6D 7446941 7447714 773 False 1024.000 1024 90.5680 2979 3750 1 chr6D.!!$F1 771
5 TraesCS2A01G450600 chr4A 71081889 71082662 773 True 1007.000 1007 90.1810 2979 3750 1 chr4A.!!$R1 771
6 TraesCS2A01G450600 chr1A 551301404 551302173 769 False 1007.000 1007 90.2980 2980 3750 1 chr1A.!!$F1 770
7 TraesCS2A01G450600 chr5A 521835193 521835975 782 True 1005.000 1005 89.9110 2971 3750 1 chr5A.!!$R1 779
8 TraesCS2A01G450600 chr5D 382081905 382082680 775 True 1003.000 1003 90.0000 2973 3750 1 chr5D.!!$R1 777
9 TraesCS2A01G450600 chr7D 583072734 583073510 776 True 1002.000 1002 89.9740 2974 3748 1 chr7D.!!$R1 774
10 TraesCS2A01G450600 chr7D 635995956 635996736 780 False 1002.000 1002 89.8850 2973 3750 1 chr7D.!!$F4 777
11 TraesCS2A01G450600 chr7D 629310879 629311922 1043 False 737.000 737 79.5690 1651 2712 1 chr7D.!!$F3 1061
12 TraesCS2A01G450600 chr1D 365751307 365752087 780 True 992.000 992 89.6420 2972 3750 1 chr1D.!!$R1 778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 381 0.037590 TGTGAATACAAGGCGCCCTT 59.962 50.0 26.15 14.3 45.88 3.95 F
390 395 0.251341 GCCCTTGAGGTGGTGTGAAT 60.251 55.0 0.00 0.0 38.26 2.57 F
1561 2588 0.249676 TTAATGGCGGCGTAGGTCAA 59.750 50.0 9.37 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 2584 0.101579 CAAAACCCACACCGGTTGAC 59.898 55.0 2.97 0.0 45.63 3.18 R
2365 3396 0.744771 GGAAGAAGACGGGGATGCAC 60.745 60.0 0.00 0.0 0.00 4.57 R
2976 4022 0.320160 GGGCGTTAGTGTTTCCGTCT 60.320 55.0 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 43 3.861840 TGCTAGATTGTAGTGCCAGTTC 58.138 45.455 0.00 0.00 0.00 3.01
52 57 5.012148 AGTGCCAGTTCTACATAAACACTCT 59.988 40.000 0.00 0.00 30.41 3.24
72 77 9.495572 ACACTCTTTTTAGTCTAAATGAGGAAG 57.504 33.333 24.38 16.96 40.68 3.46
80 85 9.490379 TTTAGTCTAAATGAGGAAGTTGAGTTC 57.510 33.333 0.65 0.00 0.00 3.01
136 141 9.426837 AGTCAATTCATAAATCAAACACATTGG 57.573 29.630 0.00 0.00 39.62 3.16
155 160 5.957842 TTGGCTAACTAAAATCACACCAG 57.042 39.130 0.00 0.00 0.00 4.00
156 161 3.756434 TGGCTAACTAAAATCACACCAGC 59.244 43.478 0.00 0.00 0.00 4.85
157 162 3.181510 GGCTAACTAAAATCACACCAGCG 60.182 47.826 0.00 0.00 0.00 5.18
174 179 4.762765 ACCAGCGGTTACAAAAACATGATA 59.237 37.500 0.00 0.00 27.29 2.15
209 214 0.392461 GCACATAGCGGGGAGACAAA 60.392 55.000 0.00 0.00 0.00 2.83
210 215 1.948611 GCACATAGCGGGGAGACAAAA 60.949 52.381 0.00 0.00 0.00 2.44
215 220 1.072505 GCGGGGAGACAAAAGACCA 59.927 57.895 0.00 0.00 0.00 4.02
216 221 0.536460 GCGGGGAGACAAAAGACCAA 60.536 55.000 0.00 0.00 0.00 3.67
293 298 8.617290 GGAATGTAATCCTACCGAATAATTGT 57.383 34.615 0.00 0.00 36.50 2.71
294 299 9.063615 GGAATGTAATCCTACCGAATAATTGTT 57.936 33.333 0.00 0.00 36.50 2.83
295 300 9.878599 GAATGTAATCCTACCGAATAATTGTTG 57.121 33.333 0.00 0.00 0.00 3.33
296 301 8.974060 ATGTAATCCTACCGAATAATTGTTGT 57.026 30.769 0.00 0.00 0.00 3.32
306 311 7.357303 ACCGAATAATTGTTGTATATTTCGGC 58.643 34.615 17.71 0.00 35.51 5.54
307 312 7.227910 ACCGAATAATTGTTGTATATTTCGGCT 59.772 33.333 17.71 5.66 35.51 5.52
308 313 8.714179 CCGAATAATTGTTGTATATTTCGGCTA 58.286 33.333 7.70 0.00 30.65 3.93
309 314 9.741168 CGAATAATTGTTGTATATTTCGGCTAG 57.259 33.333 0.00 0.00 0.00 3.42
311 316 9.787435 AATAATTGTTGTATATTTCGGCTAGGA 57.213 29.630 0.00 0.00 0.00 2.94
312 317 9.959721 ATAATTGTTGTATATTTCGGCTAGGAT 57.040 29.630 0.00 0.00 0.00 3.24
313 318 7.907214 ATTGTTGTATATTTCGGCTAGGATC 57.093 36.000 0.00 0.00 0.00 3.36
314 319 6.665992 TGTTGTATATTTCGGCTAGGATCT 57.334 37.500 0.00 0.00 0.00 2.75
315 320 6.688578 TGTTGTATATTTCGGCTAGGATCTC 58.311 40.000 0.00 0.00 0.00 2.75
316 321 6.493802 TGTTGTATATTTCGGCTAGGATCTCT 59.506 38.462 0.00 0.00 0.00 3.10
317 322 6.761099 TGTATATTTCGGCTAGGATCTCTC 57.239 41.667 0.00 0.00 0.00 3.20
318 323 6.486056 TGTATATTTCGGCTAGGATCTCTCT 58.514 40.000 0.00 0.00 0.00 3.10
319 324 5.913137 ATATTTCGGCTAGGATCTCTCTG 57.087 43.478 0.00 0.00 0.00 3.35
320 325 3.298686 TTTCGGCTAGGATCTCTCTGA 57.701 47.619 0.00 0.00 0.00 3.27
321 326 3.517296 TTCGGCTAGGATCTCTCTGAT 57.483 47.619 0.00 0.00 38.27 2.90
322 327 3.517296 TCGGCTAGGATCTCTCTGATT 57.483 47.619 0.00 0.00 35.14 2.57
323 328 3.417101 TCGGCTAGGATCTCTCTGATTC 58.583 50.000 0.00 0.00 35.14 2.52
324 329 3.153130 CGGCTAGGATCTCTCTGATTCA 58.847 50.000 0.00 0.00 35.14 2.57
325 330 3.057596 CGGCTAGGATCTCTCTGATTCAC 60.058 52.174 0.00 0.00 35.14 3.18
326 331 3.258123 GGCTAGGATCTCTCTGATTCACC 59.742 52.174 0.00 0.00 35.14 4.02
327 332 4.151883 GCTAGGATCTCTCTGATTCACCT 58.848 47.826 0.00 0.00 35.14 4.00
328 333 4.588528 GCTAGGATCTCTCTGATTCACCTT 59.411 45.833 0.00 0.00 35.14 3.50
329 334 5.509501 GCTAGGATCTCTCTGATTCACCTTG 60.510 48.000 0.00 0.00 35.14 3.61
330 335 4.618635 AGGATCTCTCTGATTCACCTTGA 58.381 43.478 0.00 0.00 35.14 3.02
331 336 5.218179 AGGATCTCTCTGATTCACCTTGAT 58.782 41.667 0.00 0.00 35.14 2.57
332 337 5.666718 AGGATCTCTCTGATTCACCTTGATT 59.333 40.000 0.00 0.00 35.14 2.57
333 338 6.843333 AGGATCTCTCTGATTCACCTTGATTA 59.157 38.462 0.00 0.00 35.14 1.75
334 339 7.015487 AGGATCTCTCTGATTCACCTTGATTAG 59.985 40.741 0.00 0.00 35.14 1.73
335 340 5.911752 TCTCTCTGATTCACCTTGATTAGC 58.088 41.667 0.00 0.00 0.00 3.09
336 341 5.423290 TCTCTCTGATTCACCTTGATTAGCA 59.577 40.000 0.00 0.00 0.00 3.49
337 342 6.053632 TCTCTGATTCACCTTGATTAGCAA 57.946 37.500 0.00 0.00 34.73 3.91
348 353 4.637483 TTGATTAGCAAGGCATGTAAGC 57.363 40.909 0.00 0.00 31.55 3.09
365 370 9.046296 GCATGTAAGCCCTATATATGTGAATAC 57.954 37.037 0.00 0.00 0.00 1.89
369 374 9.601217 GTAAGCCCTATATATGTGAATACAAGG 57.399 37.037 0.00 0.00 40.84 3.61
370 375 6.653989 AGCCCTATATATGTGAATACAAGGC 58.346 40.000 0.00 0.00 40.84 4.35
371 376 5.523916 GCCCTATATATGTGAATACAAGGCG 59.476 44.000 0.00 0.00 40.84 5.52
372 377 5.523916 CCCTATATATGTGAATACAAGGCGC 59.476 44.000 0.00 0.00 40.84 6.53
373 378 5.523916 CCTATATATGTGAATACAAGGCGCC 59.476 44.000 21.89 21.89 40.84 6.53
374 379 1.961793 TATGTGAATACAAGGCGCCC 58.038 50.000 26.15 6.18 40.84 6.13
375 380 0.255890 ATGTGAATACAAGGCGCCCT 59.744 50.000 26.15 7.54 40.84 5.19
376 381 0.037590 TGTGAATACAAGGCGCCCTT 59.962 50.000 26.15 14.30 45.88 3.95
387 392 2.669569 CGCCCTTGAGGTGGTGTG 60.670 66.667 0.00 0.00 42.98 3.82
388 393 2.836154 GCCCTTGAGGTGGTGTGA 59.164 61.111 0.00 0.00 38.26 3.58
389 394 1.150536 GCCCTTGAGGTGGTGTGAA 59.849 57.895 0.00 0.00 38.26 3.18
390 395 0.251341 GCCCTTGAGGTGGTGTGAAT 60.251 55.000 0.00 0.00 38.26 2.57
391 396 1.823250 GCCCTTGAGGTGGTGTGAATT 60.823 52.381 0.00 0.00 38.26 2.17
392 397 1.888512 CCCTTGAGGTGGTGTGAATTG 59.111 52.381 0.00 0.00 0.00 2.32
393 398 1.270550 CCTTGAGGTGGTGTGAATTGC 59.729 52.381 0.00 0.00 0.00 3.56
394 399 1.955778 CTTGAGGTGGTGTGAATTGCA 59.044 47.619 0.00 0.00 0.00 4.08
407 787 3.551485 GTGAATTGCACAACAAACTCCAC 59.449 43.478 0.00 0.00 46.91 4.02
410 790 2.645730 TGCACAACAAACTCCACAAC 57.354 45.000 0.00 0.00 0.00 3.32
414 794 4.158579 TGCACAACAAACTCCACAACAATA 59.841 37.500 0.00 0.00 0.00 1.90
418 798 6.253298 CACAACAAACTCCACAACAATACAAG 59.747 38.462 0.00 0.00 0.00 3.16
422 802 7.033185 ACAAACTCCACAACAATACAAGTTTC 58.967 34.615 0.00 0.00 34.28 2.78
423 803 5.767816 ACTCCACAACAATACAAGTTTCC 57.232 39.130 0.00 0.00 0.00 3.13
425 805 5.891551 ACTCCACAACAATACAAGTTTCCTT 59.108 36.000 0.00 0.00 0.00 3.36
440 820 7.978982 CAAGTTTCCTTGGTATCAGACTATTG 58.021 38.462 0.00 0.00 43.62 1.90
442 822 7.331791 AGTTTCCTTGGTATCAGACTATTGTC 58.668 38.462 0.00 0.00 43.22 3.18
443 823 5.871396 TCCTTGGTATCAGACTATTGTCC 57.129 43.478 3.54 0.00 43.91 4.02
444 824 5.277250 TCCTTGGTATCAGACTATTGTCCA 58.723 41.667 3.54 0.00 43.91 4.02
447 827 5.551305 TGGTATCAGACTATTGTCCATGG 57.449 43.478 4.97 4.97 43.91 3.66
448 828 5.215845 TGGTATCAGACTATTGTCCATGGA 58.784 41.667 11.44 11.44 43.91 3.41
449 829 5.305386 TGGTATCAGACTATTGTCCATGGAG 59.695 44.000 16.81 5.43 43.91 3.86
450 830 3.827008 TCAGACTATTGTCCATGGAGC 57.173 47.619 16.81 10.93 43.91 4.70
452 832 3.519107 TCAGACTATTGTCCATGGAGCAA 59.481 43.478 23.29 23.29 43.91 3.91
453 833 4.164796 TCAGACTATTGTCCATGGAGCAAT 59.835 41.667 29.25 29.25 43.91 3.56
454 834 4.275196 CAGACTATTGTCCATGGAGCAATG 59.725 45.833 31.60 25.95 43.91 2.82
455 835 2.954318 ACTATTGTCCATGGAGCAATGC 59.046 45.455 31.60 17.32 0.00 3.56
456 836 2.154567 ATTGTCCATGGAGCAATGCT 57.845 45.000 27.54 7.79 43.88 3.79
457 837 2.804986 TTGTCCATGGAGCAATGCTA 57.195 45.000 16.81 0.00 39.88 3.49
458 838 2.336945 TGTCCATGGAGCAATGCTAG 57.663 50.000 16.81 0.00 39.88 3.42
459 839 1.839354 TGTCCATGGAGCAATGCTAGA 59.161 47.619 16.81 0.00 39.88 2.43
461 841 2.121948 TCCATGGAGCAATGCTAGACT 58.878 47.619 11.44 0.00 39.88 3.24
462 842 2.103771 TCCATGGAGCAATGCTAGACTC 59.896 50.000 11.44 0.00 39.88 3.36
464 844 3.496337 CCATGGAGCAATGCTAGACTCAT 60.496 47.826 8.12 4.84 39.88 2.90
465 845 3.189618 TGGAGCAATGCTAGACTCATG 57.810 47.619 8.12 0.00 39.88 3.07
466 846 2.158856 TGGAGCAATGCTAGACTCATGG 60.159 50.000 8.12 0.00 39.88 3.66
467 847 2.492012 GAGCAATGCTAGACTCATGGG 58.508 52.381 8.12 0.00 39.88 4.00
468 848 1.142465 AGCAATGCTAGACTCATGGGG 59.858 52.381 5.69 0.00 36.99 4.96
469 849 1.816961 GCAATGCTAGACTCATGGGGG 60.817 57.143 0.00 0.00 0.00 5.40
470 850 1.492176 CAATGCTAGACTCATGGGGGT 59.508 52.381 0.00 0.00 0.00 4.95
471 851 1.135094 ATGCTAGACTCATGGGGGTG 58.865 55.000 0.00 0.00 0.00 4.61
472 852 0.252696 TGCTAGACTCATGGGGGTGT 60.253 55.000 0.00 0.00 0.00 4.16
474 854 1.282157 GCTAGACTCATGGGGGTGTTT 59.718 52.381 0.00 0.00 0.00 2.83
477 857 4.566907 GCTAGACTCATGGGGGTGTTTTTA 60.567 45.833 0.00 0.00 0.00 1.52
478 858 3.763057 AGACTCATGGGGGTGTTTTTAC 58.237 45.455 0.00 0.00 0.00 2.01
479 859 3.139397 AGACTCATGGGGGTGTTTTTACA 59.861 43.478 0.00 0.00 0.00 2.41
483 863 4.030913 TCATGGGGGTGTTTTTACAACAA 58.969 39.130 0.00 0.00 31.20 2.83
485 865 4.408182 TGGGGGTGTTTTTACAACAATG 57.592 40.909 0.00 0.00 31.20 2.82
486 866 3.135225 GGGGGTGTTTTTACAACAATGC 58.865 45.455 0.00 0.00 31.20 3.56
488 868 4.192317 GGGGTGTTTTTACAACAATGCAA 58.808 39.130 0.00 0.00 31.20 4.08
489 869 4.272261 GGGGTGTTTTTACAACAATGCAAG 59.728 41.667 0.00 0.00 31.20 4.01
490 870 4.873259 GGGTGTTTTTACAACAATGCAAGT 59.127 37.500 0.00 0.00 31.20 3.16
491 871 5.352846 GGGTGTTTTTACAACAATGCAAGTT 59.647 36.000 0.00 0.00 31.20 2.66
492 872 6.128145 GGGTGTTTTTACAACAATGCAAGTTT 60.128 34.615 5.27 1.75 31.20 2.66
494 874 8.443937 GGTGTTTTTACAACAATGCAAGTTTTA 58.556 29.630 5.27 1.95 31.20 1.52
499 879 8.723942 TTTACAACAATGCAAGTTTTATTGGT 57.276 26.923 5.27 4.39 36.41 3.67
501 881 9.988815 TTACAACAATGCAAGTTTTATTGGTAT 57.011 25.926 5.27 0.30 36.41 2.73
502 882 8.532977 ACAACAATGCAAGTTTTATTGGTATC 57.467 30.769 5.27 0.00 36.41 2.24
504 884 8.649841 CAACAATGCAAGTTTTATTGGTATCAG 58.350 33.333 5.27 0.00 36.41 2.90
506 886 8.028938 ACAATGCAAGTTTTATTGGTATCAGAC 58.971 33.333 11.50 0.00 36.41 3.51
507 887 7.944729 ATGCAAGTTTTATTGGTATCAGACT 57.055 32.000 0.00 0.00 0.00 3.24
508 888 9.461312 AATGCAAGTTTTATTGGTATCAGACTA 57.539 29.630 0.00 0.00 0.00 2.59
509 889 9.632638 ATGCAAGTTTTATTGGTATCAGACTAT 57.367 29.630 0.00 0.00 0.00 2.12
510 890 9.461312 TGCAAGTTTTATTGGTATCAGACTATT 57.539 29.630 0.00 0.00 0.00 1.73
521 901 7.615403 TGGTATCAGACTATTATTCATGGAGC 58.385 38.462 0.00 0.00 0.00 4.70
523 903 8.097038 GGTATCAGACTATTATTCATGGAGCAA 58.903 37.037 0.00 0.00 0.00 3.91
524 904 9.664332 GTATCAGACTATTATTCATGGAGCAAT 57.336 33.333 0.00 0.00 0.00 3.56
526 906 8.387190 TCAGACTATTATTCATGGAGCAATTG 57.613 34.615 0.00 0.00 0.00 2.32
527 907 7.040892 TCAGACTATTATTCATGGAGCAATTGC 60.041 37.037 23.05 23.05 42.49 3.56
528 908 6.774170 AGACTATTATTCATGGAGCAATTGCA 59.226 34.615 30.89 12.29 45.16 4.08
529 909 6.742109 ACTATTATTCATGGAGCAATTGCAC 58.258 36.000 30.89 24.61 45.16 4.57
530 910 5.601583 ATTATTCATGGAGCAATTGCACA 57.398 34.783 30.89 27.06 45.16 4.57
531 911 3.965379 ATTCATGGAGCAATTGCACAA 57.035 38.095 30.89 19.91 45.16 3.33
532 912 2.728690 TCATGGAGCAATTGCACAAC 57.271 45.000 30.89 17.68 45.16 3.32
534 914 2.364647 TCATGGAGCAATTGCACAACAA 59.635 40.909 30.89 13.60 45.16 2.83
579 1163 5.309323 TGCCATCGACCAATTTTCTTAAG 57.691 39.130 0.00 0.00 0.00 1.85
590 1175 6.261381 ACCAATTTTCTTAAGTGACAAGCGTA 59.739 34.615 1.63 0.00 0.00 4.42
605 1190 1.651987 GCGTATTAGCTGGTGCAAGA 58.348 50.000 0.00 0.00 42.74 3.02
606 1191 2.213499 GCGTATTAGCTGGTGCAAGAT 58.787 47.619 0.00 0.00 42.74 2.40
607 1192 3.390135 GCGTATTAGCTGGTGCAAGATA 58.610 45.455 0.00 0.00 42.74 1.98
608 1193 3.807622 GCGTATTAGCTGGTGCAAGATAA 59.192 43.478 0.00 0.00 42.74 1.75
609 1194 4.452455 GCGTATTAGCTGGTGCAAGATAAT 59.548 41.667 12.25 12.25 40.74 1.28
610 1195 5.049405 GCGTATTAGCTGGTGCAAGATAATT 60.049 40.000 12.71 0.89 39.05 1.40
611 1196 6.147164 GCGTATTAGCTGGTGCAAGATAATTA 59.853 38.462 12.71 0.00 39.05 1.40
612 1197 7.307751 GCGTATTAGCTGGTGCAAGATAATTAA 60.308 37.037 12.71 0.00 39.05 1.40
613 1198 8.721478 CGTATTAGCTGGTGCAAGATAATTAAT 58.279 33.333 12.71 4.13 39.05 1.40
614 1199 9.831737 GTATTAGCTGGTGCAAGATAATTAATG 57.168 33.333 12.71 0.00 39.05 1.90
615 1200 5.192327 AGCTGGTGCAAGATAATTAATGC 57.808 39.130 12.01 12.01 42.74 3.56
616 1201 4.646040 AGCTGGTGCAAGATAATTAATGCA 59.354 37.500 15.75 15.75 45.75 3.96
621 1206 5.857471 TGCAAGATAATTAATGCAAGCCT 57.143 34.783 16.81 0.00 45.04 4.58
622 1207 6.957920 TGCAAGATAATTAATGCAAGCCTA 57.042 33.333 16.81 0.00 45.04 3.93
623 1208 6.738114 TGCAAGATAATTAATGCAAGCCTAC 58.262 36.000 16.81 0.00 45.04 3.18
624 1209 6.547141 TGCAAGATAATTAATGCAAGCCTACT 59.453 34.615 16.81 0.00 45.04 2.57
657 1242 4.319177 CCTGGCTAGGCTGATTACAATAC 58.681 47.826 22.52 0.00 37.25 1.89
702 1293 5.854010 TCAGGAACTACATATGAGGACAC 57.146 43.478 10.38 0.00 36.02 3.67
770 1362 4.818005 TCAAGACAGTCAGAGTACACGTAA 59.182 41.667 2.66 0.00 0.00 3.18
790 1806 3.667282 GTGCTGCCACTGTGCCAG 61.667 66.667 13.95 13.95 38.93 4.85
813 1831 1.136891 TGACACAGATGGCGGTCTATG 59.863 52.381 0.00 0.00 36.14 2.23
818 1836 0.969894 AGATGGCGGTCTATGGCTAC 59.030 55.000 0.00 0.00 0.00 3.58
825 1845 2.231529 CGGTCTATGGCTACAGCTAGT 58.768 52.381 0.54 0.00 41.70 2.57
838 1858 6.289064 GCTACAGCTAGTTAACCACCATATT 58.711 40.000 0.88 0.00 38.21 1.28
839 1859 6.766467 GCTACAGCTAGTTAACCACCATATTT 59.234 38.462 0.88 0.00 38.21 1.40
840 1860 7.282450 GCTACAGCTAGTTAACCACCATATTTT 59.718 37.037 0.88 0.00 38.21 1.82
841 1861 9.826574 CTACAGCTAGTTAACCACCATATTTTA 57.173 33.333 0.88 0.00 0.00 1.52
927 1950 7.381678 CCTAATAACAGTAGGATTCGCTAACAC 59.618 40.741 0.00 0.00 40.67 3.32
1161 2185 2.553904 CCTGCACTTCCAGTTCTTCCAT 60.554 50.000 0.00 0.00 0.00 3.41
1284 2308 4.222847 GTCGCCGAGGATGTCCCC 62.223 72.222 0.00 0.00 36.42 4.81
1310 2334 2.472049 GCTTTCGTCAGCAGCGTC 59.528 61.111 4.04 0.00 39.83 5.19
1311 2335 2.765785 CTTTCGTCAGCAGCGTCG 59.234 61.111 0.00 0.00 0.00 5.12
1312 2336 2.016704 CTTTCGTCAGCAGCGTCGT 61.017 57.895 0.00 0.00 0.00 4.34
1342 2366 2.235402 CAGGGGAGGTACGTTTACATGT 59.765 50.000 2.69 2.69 0.00 3.21
1374 2398 0.443869 CGCGGTTCAATGTTCTCAGG 59.556 55.000 0.00 0.00 0.00 3.86
1531 2558 1.417890 CCGGATGGTAAGCTCCTTGAT 59.582 52.381 0.00 0.00 0.00 2.57
1535 2562 4.273318 GGATGGTAAGCTCCTTGATTTGT 58.727 43.478 0.00 0.00 0.00 2.83
1540 2567 5.189180 GGTAAGCTCCTTGATTTGTCATCT 58.811 41.667 0.00 0.00 0.00 2.90
1551 2578 6.558771 TGATTTGTCATCTATTAATGGCGG 57.441 37.500 0.00 0.00 33.89 6.13
1554 2581 2.224185 TGTCATCTATTAATGGCGGCGT 60.224 45.455 9.37 0.00 33.89 5.68
1555 2582 3.006003 TGTCATCTATTAATGGCGGCGTA 59.994 43.478 9.37 0.00 33.89 4.42
1556 2583 3.612860 GTCATCTATTAATGGCGGCGTAG 59.387 47.826 9.37 0.00 0.00 3.51
1557 2584 2.736144 TCTATTAATGGCGGCGTAGG 57.264 50.000 9.37 0.00 0.00 3.18
1558 2585 1.965643 TCTATTAATGGCGGCGTAGGT 59.034 47.619 9.37 0.00 0.00 3.08
1559 2586 2.029649 TCTATTAATGGCGGCGTAGGTC 60.030 50.000 9.37 0.00 0.00 3.85
1560 2587 0.466543 ATTAATGGCGGCGTAGGTCA 59.533 50.000 9.37 0.00 0.00 4.02
1561 2588 0.249676 TTAATGGCGGCGTAGGTCAA 59.750 50.000 9.37 0.00 0.00 3.18
1826 2857 1.533033 TCCGAGTTCCTGCAGTGGA 60.533 57.895 13.81 0.93 0.00 4.02
2028 3059 4.227134 CTGGGATCGGCGGGACTG 62.227 72.222 7.21 0.00 0.00 3.51
2059 3090 2.732619 CCCGAGCTACTTCCACCCC 61.733 68.421 0.00 0.00 0.00 4.95
2721 3752 2.281484 GGGACGGTTTGCTGCTGA 60.281 61.111 0.00 0.00 0.00 4.26
2737 3768 2.022195 GCTGATGATGTGATGGTTGCT 58.978 47.619 0.00 0.00 0.00 3.91
2783 3816 4.654091 TTATTACTGTACGTAGGTGGCC 57.346 45.455 0.00 0.00 0.00 5.36
2788 3821 2.073816 CTGTACGTAGGTGGCCTTTTG 58.926 52.381 3.32 0.00 34.61 2.44
2789 3822 0.800631 GTACGTAGGTGGCCTTTTGC 59.199 55.000 3.32 0.00 34.61 3.68
2836 3877 2.292016 CGTTGTTGTTAGTGGGAATGCA 59.708 45.455 0.00 0.00 0.00 3.96
2837 3878 3.243234 CGTTGTTGTTAGTGGGAATGCAA 60.243 43.478 0.00 0.00 0.00 4.08
2838 3879 4.688021 GTTGTTGTTAGTGGGAATGCAAA 58.312 39.130 0.00 0.00 0.00 3.68
2839 3880 5.296748 GTTGTTGTTAGTGGGAATGCAAAT 58.703 37.500 0.00 0.00 0.00 2.32
2846 3887 7.950512 TGTTAGTGGGAATGCAAATTATATGG 58.049 34.615 0.00 0.00 0.00 2.74
2867 3910 4.398358 TGGTGTCCGTCTAATTCTCAGTAG 59.602 45.833 0.00 0.00 0.00 2.57
2883 3929 7.575414 TCTCAGTAGTAATGGATTCTCACTC 57.425 40.000 0.00 0.00 0.00 3.51
2895 3941 1.436600 TCTCACTCCGTACAGTCGTC 58.563 55.000 0.00 0.00 0.00 4.20
2901 3947 1.196354 CTCCGTACAGTCGTCGTTTCT 59.804 52.381 0.00 0.00 0.00 2.52
2909 3955 4.893795 ACAGTCGTCGTTTCTTCTTTTTG 58.106 39.130 0.00 0.00 0.00 2.44
2910 3956 3.719352 CAGTCGTCGTTTCTTCTTTTTGC 59.281 43.478 0.00 0.00 0.00 3.68
2911 3957 3.033873 GTCGTCGTTTCTTCTTTTTGCC 58.966 45.455 0.00 0.00 0.00 4.52
2912 3958 2.678836 TCGTCGTTTCTTCTTTTTGCCA 59.321 40.909 0.00 0.00 0.00 4.92
2913 3959 3.314080 TCGTCGTTTCTTCTTTTTGCCAT 59.686 39.130 0.00 0.00 0.00 4.40
2914 3960 3.664025 CGTCGTTTCTTCTTTTTGCCATC 59.336 43.478 0.00 0.00 0.00 3.51
2915 3961 4.554723 CGTCGTTTCTTCTTTTTGCCATCT 60.555 41.667 0.00 0.00 0.00 2.90
2916 3962 5.333798 CGTCGTTTCTTCTTTTTGCCATCTA 60.334 40.000 0.00 0.00 0.00 1.98
2917 3963 6.612306 GTCGTTTCTTCTTTTTGCCATCTAT 58.388 36.000 0.00 0.00 0.00 1.98
2918 3964 6.524586 GTCGTTTCTTCTTTTTGCCATCTATG 59.475 38.462 0.00 0.00 0.00 2.23
2919 3965 6.429692 TCGTTTCTTCTTTTTGCCATCTATGA 59.570 34.615 0.00 0.00 0.00 2.15
2920 3966 7.121168 TCGTTTCTTCTTTTTGCCATCTATGAT 59.879 33.333 0.00 0.00 0.00 2.45
2921 3967 7.756722 CGTTTCTTCTTTTTGCCATCTATGATT 59.243 33.333 0.00 0.00 0.00 2.57
2943 3989 9.797642 TGATTAATCATAGTTGCCATCTATTGT 57.202 29.630 14.23 0.00 0.00 2.71
2949 3995 9.797642 ATCATAGTTGCCATCTATTGTTAATCA 57.202 29.630 0.00 0.00 0.00 2.57
2950 3996 9.276590 TCATAGTTGCCATCTATTGTTAATCAG 57.723 33.333 0.00 0.00 0.00 2.90
2951 3997 6.949352 AGTTGCCATCTATTGTTAATCAGG 57.051 37.500 0.00 0.00 0.00 3.86
2952 3998 6.662755 AGTTGCCATCTATTGTTAATCAGGA 58.337 36.000 0.00 0.00 0.00 3.86
2953 3999 7.293073 AGTTGCCATCTATTGTTAATCAGGAT 58.707 34.615 0.00 0.00 0.00 3.24
2954 4000 8.439971 AGTTGCCATCTATTGTTAATCAGGATA 58.560 33.333 0.00 0.00 0.00 2.59
2955 4001 9.066892 GTTGCCATCTATTGTTAATCAGGATAA 57.933 33.333 0.00 0.00 0.00 1.75
2956 4002 8.853077 TGCCATCTATTGTTAATCAGGATAAG 57.147 34.615 0.00 0.00 0.00 1.73
2957 4003 8.659527 TGCCATCTATTGTTAATCAGGATAAGA 58.340 33.333 0.00 0.00 0.00 2.10
2958 4004 9.160496 GCCATCTATTGTTAATCAGGATAAGAG 57.840 37.037 0.00 0.00 0.00 2.85
2959 4005 9.160496 CCATCTATTGTTAATCAGGATAAGAGC 57.840 37.037 0.00 0.00 0.00 4.09
2960 4006 9.941325 CATCTATTGTTAATCAGGATAAGAGCT 57.059 33.333 0.00 0.00 0.00 4.09
2997 4043 0.179051 ACGGAAACACTAACGCCCAA 60.179 50.000 0.00 0.00 0.00 4.12
2999 4045 1.538075 CGGAAACACTAACGCCCAAAT 59.462 47.619 0.00 0.00 0.00 2.32
3014 4060 0.673437 CAAATGTGTGGGCGTTTCCT 59.327 50.000 0.00 0.00 34.39 3.36
3075 4121 3.064134 TGCACGAATCTTGACACGAAAAA 59.936 39.130 0.00 0.00 0.00 1.94
3076 4122 4.219033 GCACGAATCTTGACACGAAAAAT 58.781 39.130 0.00 0.00 0.00 1.82
3078 4124 5.849081 GCACGAATCTTGACACGAAAAATTA 59.151 36.000 0.00 0.00 0.00 1.40
3115 4161 3.936203 GACGGGGCTGGTGTGTGA 61.936 66.667 0.00 0.00 0.00 3.58
3141 4187 2.594592 GAGTTTGCCCACACGCCT 60.595 61.111 0.00 0.00 0.00 5.52
3168 4214 1.948508 CTGTTTGCCAGTTGCGCTA 59.051 52.632 9.73 0.00 45.60 4.26
3189 4235 1.414919 TGTGGGCGAACTAGTTTCTGT 59.585 47.619 10.02 0.00 31.20 3.41
3236 4284 1.781025 CGTGGGCGAACTGCTTTTCA 61.781 55.000 0.00 0.00 45.43 2.69
3251 4300 0.537653 TTTCACCCACACGACACTCA 59.462 50.000 0.00 0.00 0.00 3.41
3254 4303 2.176045 TCACCCACACGACACTCATAT 58.824 47.619 0.00 0.00 0.00 1.78
3321 4370 8.296713 GGTAAATACACATGACAACTGTGATTT 58.703 33.333 14.60 15.30 45.44 2.17
3342 4392 2.823924 TTGCTAGACGGCAACTACAA 57.176 45.000 0.00 0.00 45.64 2.41
3352 4402 2.452006 GCAACTACAATTGCGCGTAT 57.548 45.000 8.43 0.00 45.08 3.06
3387 4439 1.024271 ACACACATGGCAACTGTGAC 58.976 50.000 26.05 0.00 45.44 3.67
3396 4448 5.767665 ACATGGCAACTGTGACTAACAATAA 59.232 36.000 0.00 0.00 38.67 1.40
3424 4476 2.301870 ACTATGATTGGACCACACGTGT 59.698 45.455 17.22 17.22 0.00 4.49
3432 4484 1.338973 GGACCACACGTGTCAACTAGA 59.661 52.381 20.49 0.00 0.00 2.43
3524 4578 0.249784 TTACACGCGGCAACTACCAA 60.250 50.000 12.47 0.00 0.00 3.67
3527 4581 0.659123 CACGCGGCAACTACCAAAAC 60.659 55.000 12.47 0.00 0.00 2.43
3532 4586 2.095415 GCGGCAACTACCAAAACTTAGG 60.095 50.000 0.00 0.00 0.00 2.69
3546 4600 6.265577 CAAAACTTAGGCATGGCAACTATAC 58.734 40.000 22.64 0.00 37.61 1.47
3550 4604 6.525629 ACTTAGGCATGGCAACTATACTTAG 58.474 40.000 22.64 3.85 37.61 2.18
3643 4697 4.949856 AGGATGGCAACTAAATCGTCATTT 59.050 37.500 0.00 0.00 36.18 2.32
3675 4729 0.608130 AACGTAGCTGCATCAGGACA 59.392 50.000 1.02 0.00 31.21 4.02
3723 4777 1.672854 CGCGGGGTGGAGATGAGTAA 61.673 60.000 0.00 0.00 0.00 2.24
3744 4798 2.520500 TTGTTGGGCGTGTGGCAT 60.521 55.556 0.00 0.00 46.16 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.515502 AGAACTGGCACTACAATCTAGCA 59.484 43.478 0.00 0.00 0.00 3.49
52 57 9.847224 ACTCAACTTCCTCATTTAGACTAAAAA 57.153 29.630 11.57 3.08 0.00 1.94
72 77 9.023967 GCAATAAATCACAATATGGAACTCAAC 57.976 33.333 0.00 0.00 0.00 3.18
80 85 6.571605 TGTGTGGCAATAAATCACAATATGG 58.428 36.000 4.13 0.00 42.11 2.74
95 100 7.459795 TGAATTGACTATTTATGTGTGGCAA 57.540 32.000 0.00 0.00 0.00 4.52
123 128 8.584157 TGATTTTAGTTAGCCAATGTGTTTGAT 58.416 29.630 0.00 0.00 37.53 2.57
124 129 7.865385 GTGATTTTAGTTAGCCAATGTGTTTGA 59.135 33.333 0.00 0.00 37.53 2.69
136 141 3.181510 CCGCTGGTGTGATTTTAGTTAGC 60.182 47.826 0.00 0.00 0.00 3.09
155 160 5.462405 TGGTTATCATGTTTTTGTAACCGC 58.538 37.500 7.77 0.00 44.49 5.68
156 161 7.913297 CCTATGGTTATCATGTTTTTGTAACCG 59.087 37.037 7.77 0.00 44.49 4.44
157 162 8.745590 ACCTATGGTTATCATGTTTTTGTAACC 58.254 33.333 5.82 5.82 42.80 2.85
174 179 1.354031 TGTGCATGGACACCTATGGTT 59.646 47.619 16.89 0.00 39.93 3.67
266 271 9.938280 CAATTATTCGGTAGGATTACATTCCTA 57.062 33.333 0.00 0.00 44.50 2.94
268 273 8.617290 ACAATTATTCGGTAGGATTACATTCC 57.383 34.615 0.00 0.00 35.90 3.01
269 274 9.878599 CAACAATTATTCGGTAGGATTACATTC 57.121 33.333 0.00 0.00 0.00 2.67
270 275 9.403583 ACAACAATTATTCGGTAGGATTACATT 57.596 29.630 0.00 0.00 0.00 2.71
271 276 8.974060 ACAACAATTATTCGGTAGGATTACAT 57.026 30.769 0.00 0.00 0.00 2.29
283 288 9.741168 CTAGCCGAAATATACAACAATTATTCG 57.259 33.333 0.00 0.00 38.41 3.34
285 290 9.787435 TCCTAGCCGAAATATACAACAATTATT 57.213 29.630 0.00 0.00 0.00 1.40
286 291 9.959721 ATCCTAGCCGAAATATACAACAATTAT 57.040 29.630 0.00 0.00 0.00 1.28
287 292 9.431887 GATCCTAGCCGAAATATACAACAATTA 57.568 33.333 0.00 0.00 0.00 1.40
288 293 8.157476 AGATCCTAGCCGAAATATACAACAATT 58.843 33.333 0.00 0.00 0.00 2.32
289 294 7.680730 AGATCCTAGCCGAAATATACAACAAT 58.319 34.615 0.00 0.00 0.00 2.71
290 295 7.015292 AGAGATCCTAGCCGAAATATACAACAA 59.985 37.037 0.00 0.00 0.00 2.83
291 296 6.493802 AGAGATCCTAGCCGAAATATACAACA 59.506 38.462 0.00 0.00 0.00 3.33
292 297 6.926313 AGAGATCCTAGCCGAAATATACAAC 58.074 40.000 0.00 0.00 0.00 3.32
293 298 6.948886 AGAGAGATCCTAGCCGAAATATACAA 59.051 38.462 0.00 0.00 0.00 2.41
294 299 6.375736 CAGAGAGATCCTAGCCGAAATATACA 59.624 42.308 0.00 0.00 0.00 2.29
295 300 6.600032 TCAGAGAGATCCTAGCCGAAATATAC 59.400 42.308 0.00 0.00 0.00 1.47
296 301 6.722328 TCAGAGAGATCCTAGCCGAAATATA 58.278 40.000 0.00 0.00 0.00 0.86
297 302 5.575157 TCAGAGAGATCCTAGCCGAAATAT 58.425 41.667 0.00 0.00 0.00 1.28
298 303 4.986783 TCAGAGAGATCCTAGCCGAAATA 58.013 43.478 0.00 0.00 0.00 1.40
299 304 3.838565 TCAGAGAGATCCTAGCCGAAAT 58.161 45.455 0.00 0.00 0.00 2.17
300 305 3.298686 TCAGAGAGATCCTAGCCGAAA 57.701 47.619 0.00 0.00 0.00 3.46
301 306 3.517296 ATCAGAGAGATCCTAGCCGAA 57.483 47.619 0.00 0.00 28.20 4.30
302 307 3.181439 TGAATCAGAGAGATCCTAGCCGA 60.181 47.826 0.00 0.00 35.39 5.54
303 308 3.057596 GTGAATCAGAGAGATCCTAGCCG 60.058 52.174 0.00 0.00 35.39 5.52
304 309 3.258123 GGTGAATCAGAGAGATCCTAGCC 59.742 52.174 0.00 0.00 35.39 3.93
305 310 4.151883 AGGTGAATCAGAGAGATCCTAGC 58.848 47.826 0.00 0.00 35.39 3.42
306 311 5.832595 TCAAGGTGAATCAGAGAGATCCTAG 59.167 44.000 0.00 0.00 35.39 3.02
307 312 5.770919 TCAAGGTGAATCAGAGAGATCCTA 58.229 41.667 0.00 0.00 35.39 2.94
308 313 4.618635 TCAAGGTGAATCAGAGAGATCCT 58.381 43.478 0.00 0.00 35.39 3.24
309 314 5.549742 ATCAAGGTGAATCAGAGAGATCC 57.450 43.478 0.00 0.00 35.39 3.36
310 315 6.646240 GCTAATCAAGGTGAATCAGAGAGATC 59.354 42.308 0.00 0.00 35.39 2.75
311 316 6.099413 TGCTAATCAAGGTGAATCAGAGAGAT 59.901 38.462 0.00 0.00 39.09 2.75
312 317 5.423290 TGCTAATCAAGGTGAATCAGAGAGA 59.577 40.000 0.00 0.00 0.00 3.10
313 318 5.668471 TGCTAATCAAGGTGAATCAGAGAG 58.332 41.667 0.00 0.00 0.00 3.20
314 319 5.682234 TGCTAATCAAGGTGAATCAGAGA 57.318 39.130 0.00 0.00 0.00 3.10
315 320 6.360844 CTTGCTAATCAAGGTGAATCAGAG 57.639 41.667 0.00 0.00 46.50 3.35
327 332 4.637483 GCTTACATGCCTTGCTAATCAA 57.363 40.909 0.00 0.00 0.00 2.57
339 344 9.046296 GTATTCACATATATAGGGCTTACATGC 57.954 37.037 0.00 0.00 0.00 4.06
343 348 9.601217 CCTTGTATTCACATATATAGGGCTTAC 57.399 37.037 0.00 0.00 33.76 2.34
344 349 8.265055 GCCTTGTATTCACATATATAGGGCTTA 58.735 37.037 0.00 0.00 39.60 3.09
345 350 7.112779 GCCTTGTATTCACATATATAGGGCTT 58.887 38.462 0.00 0.00 39.60 4.35
346 351 6.630413 CGCCTTGTATTCACATATATAGGGCT 60.630 42.308 10.27 0.00 40.15 5.19
347 352 5.523916 CGCCTTGTATTCACATATATAGGGC 59.476 44.000 0.00 0.00 39.44 5.19
348 353 5.523916 GCGCCTTGTATTCACATATATAGGG 59.476 44.000 0.00 0.00 33.76 3.53
349 354 5.523916 GGCGCCTTGTATTCACATATATAGG 59.476 44.000 22.15 0.00 33.76 2.57
350 355 5.523916 GGGCGCCTTGTATTCACATATATAG 59.476 44.000 28.56 0.00 33.76 1.31
351 356 5.188948 AGGGCGCCTTGTATTCACATATATA 59.811 40.000 28.56 0.00 33.76 0.86
352 357 4.019321 AGGGCGCCTTGTATTCACATATAT 60.019 41.667 28.56 0.00 33.76 0.86
353 358 3.326588 AGGGCGCCTTGTATTCACATATA 59.673 43.478 28.56 0.00 33.76 0.86
354 359 2.106511 AGGGCGCCTTGTATTCACATAT 59.893 45.455 28.56 0.00 33.76 1.78
355 360 1.488812 AGGGCGCCTTGTATTCACATA 59.511 47.619 28.56 0.00 33.76 2.29
356 361 0.255890 AGGGCGCCTTGTATTCACAT 59.744 50.000 28.56 0.00 33.76 3.21
357 362 0.037590 AAGGGCGCCTTGTATTCACA 59.962 50.000 28.56 0.00 42.96 3.58
358 363 2.868253 AAGGGCGCCTTGTATTCAC 58.132 52.632 28.56 5.83 42.96 3.18
366 371 4.351054 CCACCTCAAGGGCGCCTT 62.351 66.667 28.56 18.19 45.88 4.35
369 374 4.643387 ACACCACCTCAAGGGCGC 62.643 66.667 0.00 0.00 40.27 6.53
370 375 2.669569 CACACCACCTCAAGGGCG 60.670 66.667 0.29 0.00 40.27 6.13
371 376 0.251341 ATTCACACCACCTCAAGGGC 60.251 55.000 0.29 0.00 40.27 5.19
372 377 1.888512 CAATTCACACCACCTCAAGGG 59.111 52.381 0.29 0.00 40.27 3.95
373 378 1.270550 GCAATTCACACCACCTCAAGG 59.729 52.381 0.00 0.00 42.17 3.61
374 379 1.955778 TGCAATTCACACCACCTCAAG 59.044 47.619 0.00 0.00 0.00 3.02
375 380 1.680735 GTGCAATTCACACCACCTCAA 59.319 47.619 0.00 0.00 44.98 3.02
376 381 1.317613 GTGCAATTCACACCACCTCA 58.682 50.000 0.00 0.00 44.98 3.86
385 390 3.551485 GTGGAGTTTGTTGTGCAATTCAC 59.449 43.478 0.00 2.27 45.82 3.18
386 391 3.194329 TGTGGAGTTTGTTGTGCAATTCA 59.806 39.130 0.00 0.00 36.89 2.57
387 392 3.779759 TGTGGAGTTTGTTGTGCAATTC 58.220 40.909 0.00 0.00 36.89 2.17
388 393 3.883830 TGTGGAGTTTGTTGTGCAATT 57.116 38.095 0.00 0.00 36.89 2.32
389 394 3.056250 TGTTGTGGAGTTTGTTGTGCAAT 60.056 39.130 0.00 0.00 36.89 3.56
390 395 2.297315 TGTTGTGGAGTTTGTTGTGCAA 59.703 40.909 0.00 0.00 34.87 4.08
391 396 1.889170 TGTTGTGGAGTTTGTTGTGCA 59.111 42.857 0.00 0.00 0.00 4.57
392 397 2.645730 TGTTGTGGAGTTTGTTGTGC 57.354 45.000 0.00 0.00 0.00 4.57
393 398 5.645624 TGTATTGTTGTGGAGTTTGTTGTG 58.354 37.500 0.00 0.00 0.00 3.33
394 399 5.906113 TGTATTGTTGTGGAGTTTGTTGT 57.094 34.783 0.00 0.00 0.00 3.32
398 778 6.475402 GGAAACTTGTATTGTTGTGGAGTTTG 59.525 38.462 3.61 0.00 36.37 2.93
418 798 6.539103 GGACAATAGTCTGATACCAAGGAAAC 59.461 42.308 0.00 0.00 44.36 2.78
422 802 5.614324 TGGACAATAGTCTGATACCAAGG 57.386 43.478 0.00 0.00 44.36 3.61
423 803 5.994054 CCATGGACAATAGTCTGATACCAAG 59.006 44.000 5.56 0.00 44.36 3.61
425 805 5.215845 TCCATGGACAATAGTCTGATACCA 58.784 41.667 11.44 0.00 44.36 3.25
426 806 5.788450 CTCCATGGACAATAGTCTGATACC 58.212 45.833 11.44 0.00 44.36 2.73
428 808 4.901250 TGCTCCATGGACAATAGTCTGATA 59.099 41.667 11.44 0.00 44.36 2.15
430 810 3.106827 TGCTCCATGGACAATAGTCTGA 58.893 45.455 11.44 0.00 44.36 3.27
431 811 3.548745 TGCTCCATGGACAATAGTCTG 57.451 47.619 11.44 0.00 44.36 3.51
432 812 4.458397 CATTGCTCCATGGACAATAGTCT 58.542 43.478 27.58 14.01 44.36 3.24
433 813 3.004106 GCATTGCTCCATGGACAATAGTC 59.996 47.826 27.58 19.99 44.21 2.59
435 815 3.220110 AGCATTGCTCCATGGACAATAG 58.780 45.455 27.58 23.35 30.62 1.73
436 816 3.301794 AGCATTGCTCCATGGACAATA 57.698 42.857 27.58 13.32 30.62 1.90
437 817 2.154567 AGCATTGCTCCATGGACAAT 57.845 45.000 24.88 24.88 30.62 2.71
438 818 2.239402 TCTAGCATTGCTCCATGGACAA 59.761 45.455 23.29 23.29 40.44 3.18
439 819 1.839354 TCTAGCATTGCTCCATGGACA 59.161 47.619 15.81 11.51 40.44 4.02
440 820 2.158842 AGTCTAGCATTGCTCCATGGAC 60.159 50.000 15.81 15.10 40.44 4.02
442 822 2.158856 TGAGTCTAGCATTGCTCCATGG 60.159 50.000 15.81 4.97 40.44 3.66
443 823 3.189618 TGAGTCTAGCATTGCTCCATG 57.810 47.619 15.81 4.63 40.44 3.66
444 824 3.496337 CCATGAGTCTAGCATTGCTCCAT 60.496 47.826 15.81 9.06 40.44 3.41
447 827 2.492012 CCCATGAGTCTAGCATTGCTC 58.508 52.381 15.81 0.57 40.44 4.26
448 828 1.142465 CCCCATGAGTCTAGCATTGCT 59.858 52.381 16.63 16.63 43.41 3.91
449 829 1.602311 CCCCATGAGTCTAGCATTGC 58.398 55.000 0.00 0.00 0.00 3.56
450 830 1.492176 ACCCCCATGAGTCTAGCATTG 59.508 52.381 0.00 0.00 0.00 2.82
452 832 1.135094 CACCCCCATGAGTCTAGCAT 58.865 55.000 0.00 0.00 0.00 3.79
453 833 0.252696 ACACCCCCATGAGTCTAGCA 60.253 55.000 0.00 0.00 0.00 3.49
454 834 0.912486 AACACCCCCATGAGTCTAGC 59.088 55.000 0.00 0.00 0.00 3.42
455 835 3.721087 AAAACACCCCCATGAGTCTAG 57.279 47.619 0.00 0.00 0.00 2.43
456 836 4.351407 TGTAAAAACACCCCCATGAGTCTA 59.649 41.667 0.00 0.00 0.00 2.59
457 837 3.139397 TGTAAAAACACCCCCATGAGTCT 59.861 43.478 0.00 0.00 0.00 3.24
458 838 3.492337 TGTAAAAACACCCCCATGAGTC 58.508 45.455 0.00 0.00 0.00 3.36
459 839 3.603965 TGTAAAAACACCCCCATGAGT 57.396 42.857 0.00 0.00 0.00 3.41
461 841 3.643237 TGTTGTAAAAACACCCCCATGA 58.357 40.909 0.00 0.00 0.00 3.07
462 842 4.408182 TTGTTGTAAAAACACCCCCATG 57.592 40.909 0.00 0.00 0.00 3.66
464 844 3.432326 GCATTGTTGTAAAAACACCCCCA 60.432 43.478 0.00 0.00 0.00 4.96
465 845 3.135225 GCATTGTTGTAAAAACACCCCC 58.865 45.455 0.00 0.00 0.00 5.40
466 846 3.798202 TGCATTGTTGTAAAAACACCCC 58.202 40.909 0.00 0.00 0.00 4.95
467 847 4.873259 ACTTGCATTGTTGTAAAAACACCC 59.127 37.500 0.00 0.00 0.00 4.61
468 848 6.415798 AACTTGCATTGTTGTAAAAACACC 57.584 33.333 5.03 0.00 0.00 4.16
469 849 9.980780 ATAAAACTTGCATTGTTGTAAAAACAC 57.019 25.926 6.40 0.00 0.00 3.32
472 852 9.994432 CCAATAAAACTTGCATTGTTGTAAAAA 57.006 25.926 6.40 0.00 0.00 1.94
474 854 8.723942 ACCAATAAAACTTGCATTGTTGTAAA 57.276 26.923 6.40 0.00 0.00 2.01
477 857 8.147058 TGATACCAATAAAACTTGCATTGTTGT 58.853 29.630 6.40 4.18 0.00 3.32
478 858 8.531622 TGATACCAATAAAACTTGCATTGTTG 57.468 30.769 6.40 3.87 0.00 3.33
479 859 8.584157 TCTGATACCAATAAAACTTGCATTGTT 58.416 29.630 0.00 0.00 0.00 2.83
483 863 7.944729 AGTCTGATACCAATAAAACTTGCAT 57.055 32.000 0.00 0.00 0.00 3.96
496 876 7.235399 TGCTCCATGAATAATAGTCTGATACCA 59.765 37.037 0.00 0.00 0.00 3.25
497 877 7.615403 TGCTCCATGAATAATAGTCTGATACC 58.385 38.462 0.00 0.00 0.00 2.73
501 881 7.040892 GCAATTGCTCCATGAATAATAGTCTGA 60.041 37.037 23.21 0.00 38.21 3.27
502 882 7.082602 GCAATTGCTCCATGAATAATAGTCTG 58.917 38.462 23.21 0.00 38.21 3.51
504 884 6.860023 GTGCAATTGCTCCATGAATAATAGTC 59.140 38.462 29.37 0.00 42.66 2.59
506 886 6.741109 TGTGCAATTGCTCCATGAATAATAG 58.259 36.000 29.37 0.00 42.66 1.73
507 887 6.712179 TGTGCAATTGCTCCATGAATAATA 57.288 33.333 29.37 3.06 42.66 0.98
508 888 5.601583 TGTGCAATTGCTCCATGAATAAT 57.398 34.783 29.37 0.00 42.66 1.28
509 889 5.170021 GTTGTGCAATTGCTCCATGAATAA 58.830 37.500 29.37 12.42 42.66 1.40
510 890 4.220163 TGTTGTGCAATTGCTCCATGAATA 59.780 37.500 29.37 12.47 42.66 1.75
514 894 2.442212 TGTTGTGCAATTGCTCCATG 57.558 45.000 29.37 0.00 42.66 3.66
515 895 3.331150 CATTGTTGTGCAATTGCTCCAT 58.669 40.909 29.37 13.13 44.82 3.41
516 896 2.756829 CATTGTTGTGCAATTGCTCCA 58.243 42.857 29.37 22.23 44.82 3.86
517 897 1.461897 GCATTGTTGTGCAATTGCTCC 59.538 47.619 29.37 20.07 44.82 4.70
518 898 2.867456 GCATTGTTGTGCAATTGCTC 57.133 45.000 29.37 25.76 44.82 4.26
526 906 6.284475 TCAATAAAACTTGCATTGTTGTGC 57.716 33.333 6.40 0.00 45.25 4.57
527 907 8.336806 ACAATCAATAAAACTTGCATTGTTGTG 58.663 29.630 6.40 2.65 35.62 3.33
528 908 8.436046 ACAATCAATAAAACTTGCATTGTTGT 57.564 26.923 6.40 4.18 35.62 3.32
529 909 8.011106 GGACAATCAATAAAACTTGCATTGTTG 58.989 33.333 6.40 4.12 37.20 3.33
530 910 7.714377 TGGACAATCAATAAAACTTGCATTGTT 59.286 29.630 0.00 0.00 37.20 2.83
531 911 7.215789 TGGACAATCAATAAAACTTGCATTGT 58.784 30.769 0.00 11.10 38.32 2.71
532 912 7.655236 TGGACAATCAATAAAACTTGCATTG 57.345 32.000 0.00 0.00 34.03 2.82
534 914 6.314400 GCATGGACAATCAATAAAACTTGCAT 59.686 34.615 0.00 0.00 0.00 3.96
535 915 5.638657 GCATGGACAATCAATAAAACTTGCA 59.361 36.000 0.00 0.00 0.00 4.08
537 917 6.164876 TGGCATGGACAATCAATAAAACTTG 58.835 36.000 0.00 0.00 0.00 3.16
539 919 5.999205 TGGCATGGACAATCAATAAAACT 57.001 34.783 0.00 0.00 0.00 2.66
540 920 5.459762 CGATGGCATGGACAATCAATAAAAC 59.540 40.000 3.81 0.00 0.00 2.43
543 923 4.275689 GTCGATGGCATGGACAATCAATAA 59.724 41.667 30.13 0.00 37.84 1.40
545 925 2.620115 GTCGATGGCATGGACAATCAAT 59.380 45.455 30.13 0.00 37.84 2.57
547 927 1.667236 GTCGATGGCATGGACAATCA 58.333 50.000 30.13 0.31 37.84 2.57
548 928 0.947244 GGTCGATGGCATGGACAATC 59.053 55.000 33.68 19.00 39.43 2.67
579 1163 2.348666 CACCAGCTAATACGCTTGTCAC 59.651 50.000 0.00 0.00 38.41 3.67
590 1175 7.014518 TGCATTAATTATCTTGCACCAGCTAAT 59.985 33.333 11.90 0.00 39.98 1.73
596 1181 5.350633 GCTTGCATTAATTATCTTGCACCA 58.649 37.500 14.34 4.68 44.16 4.17
599 1184 5.857471 AGGCTTGCATTAATTATCTTGCA 57.143 34.783 11.90 11.90 42.90 4.08
600 1185 6.974965 AGTAGGCTTGCATTAATTATCTTGC 58.025 36.000 0.00 8.04 35.67 4.01
602 1187 9.853177 AACTAGTAGGCTTGCATTAATTATCTT 57.147 29.630 0.00 0.00 0.00 2.40
605 1190 9.204570 CGTAACTAGTAGGCTTGCATTAATTAT 57.795 33.333 0.00 0.00 0.00 1.28
606 1191 8.199449 ACGTAACTAGTAGGCTTGCATTAATTA 58.801 33.333 0.00 0.00 0.00 1.40
607 1192 7.011109 CACGTAACTAGTAGGCTTGCATTAATT 59.989 37.037 0.00 0.00 0.00 1.40
608 1193 6.479001 CACGTAACTAGTAGGCTTGCATTAAT 59.521 38.462 0.00 0.00 0.00 1.40
609 1194 5.808540 CACGTAACTAGTAGGCTTGCATTAA 59.191 40.000 0.00 0.00 0.00 1.40
610 1195 5.125900 TCACGTAACTAGTAGGCTTGCATTA 59.874 40.000 0.00 0.00 0.00 1.90
611 1196 4.081862 TCACGTAACTAGTAGGCTTGCATT 60.082 41.667 0.00 0.00 0.00 3.56
612 1197 3.446161 TCACGTAACTAGTAGGCTTGCAT 59.554 43.478 0.00 0.00 0.00 3.96
613 1198 2.821378 TCACGTAACTAGTAGGCTTGCA 59.179 45.455 0.00 0.00 0.00 4.08
614 1199 3.177487 GTCACGTAACTAGTAGGCTTGC 58.823 50.000 0.00 0.00 0.00 4.01
615 1200 3.442977 AGGTCACGTAACTAGTAGGCTTG 59.557 47.826 0.00 0.00 0.00 4.01
616 1201 3.442977 CAGGTCACGTAACTAGTAGGCTT 59.557 47.826 0.00 0.00 0.00 4.35
617 1202 3.015327 CAGGTCACGTAACTAGTAGGCT 58.985 50.000 0.00 0.00 0.00 4.58
618 1203 2.098770 CCAGGTCACGTAACTAGTAGGC 59.901 54.545 0.00 0.00 0.00 3.93
619 1204 2.098770 GCCAGGTCACGTAACTAGTAGG 59.901 54.545 0.00 0.00 0.00 3.18
620 1205 3.015327 AGCCAGGTCACGTAACTAGTAG 58.985 50.000 0.00 0.00 0.00 2.57
621 1206 3.077484 AGCCAGGTCACGTAACTAGTA 57.923 47.619 0.00 0.00 0.00 1.82
622 1207 1.920610 AGCCAGGTCACGTAACTAGT 58.079 50.000 0.00 0.00 0.00 2.57
623 1208 2.358267 CCTAGCCAGGTCACGTAACTAG 59.642 54.545 0.00 0.00 37.15 2.57
624 1209 2.372264 CCTAGCCAGGTCACGTAACTA 58.628 52.381 0.00 0.00 37.15 2.24
680 1265 5.269189 TGTGTCCTCATATGTAGTTCCTGA 58.731 41.667 1.90 0.00 0.00 3.86
759 1351 1.992170 CAGCACCCTTACGTGTACTC 58.008 55.000 0.00 0.00 36.08 2.59
770 1362 4.962836 GCACAGTGGCAGCACCCT 62.963 66.667 1.84 0.00 37.83 4.34
790 1806 0.811616 GACCGCCATCTGTGTCATCC 60.812 60.000 0.00 0.00 0.00 3.51
813 1831 2.235402 TGGTGGTTAACTAGCTGTAGCC 59.765 50.000 19.91 4.47 43.38 3.93
825 1845 8.713708 CCATGGGTATAAAATATGGTGGTTAA 57.286 34.615 2.85 0.00 34.88 2.01
838 1858 5.222151 TGTGACCTTTGACCATGGGTATAAA 60.222 40.000 18.09 10.23 35.25 1.40
839 1859 4.289934 TGTGACCTTTGACCATGGGTATAA 59.710 41.667 18.09 2.37 35.25 0.98
840 1860 3.847184 TGTGACCTTTGACCATGGGTATA 59.153 43.478 18.09 0.00 35.25 1.47
841 1861 2.647299 TGTGACCTTTGACCATGGGTAT 59.353 45.455 18.09 0.00 35.25 2.73
842 1862 2.058705 TGTGACCTTTGACCATGGGTA 58.941 47.619 18.09 0.65 35.25 3.69
1161 2185 2.448961 CCCATAGGAGAAGAGGGAGAGA 59.551 54.545 0.00 0.00 42.25 3.10
1198 2222 3.060020 GCGGGATGAGGACGAACGA 62.060 63.158 0.14 0.00 0.00 3.85
1310 2334 3.649277 CTCCCCTGGCAAGACGACG 62.649 68.421 0.00 0.00 0.00 5.12
1311 2335 2.266055 CTCCCCTGGCAAGACGAC 59.734 66.667 0.00 0.00 0.00 4.34
1312 2336 2.449967 TACCTCCCCTGGCAAGACGA 62.450 60.000 0.00 0.00 0.00 4.20
1476 2500 2.028484 GTGTCACCGTCGCTTCCA 59.972 61.111 0.00 0.00 0.00 3.53
1479 2503 4.657824 CCCGTGTCACCGTCGCTT 62.658 66.667 0.00 0.00 0.00 4.68
1525 2549 7.080099 CGCCATTAATAGATGACAAATCAAGG 58.920 38.462 0.00 0.00 38.69 3.61
1531 2558 3.249799 CGCCGCCATTAATAGATGACAAA 59.750 43.478 0.00 0.00 0.00 2.83
1535 2562 2.831685 ACGCCGCCATTAATAGATGA 57.168 45.000 0.00 0.00 0.00 2.92
1540 2567 1.687660 TGACCTACGCCGCCATTAATA 59.312 47.619 0.00 0.00 0.00 0.98
1551 2578 2.025418 CACACCGGTTGACCTACGC 61.025 63.158 2.97 0.00 0.00 4.42
1554 2581 1.055551 AACCCACACCGGTTGACCTA 61.056 55.000 2.97 0.00 44.63 3.08
1555 2582 1.928714 AAACCCACACCGGTTGACCT 61.929 55.000 2.97 0.00 45.63 3.85
1556 2583 1.038681 AAAACCCACACCGGTTGACC 61.039 55.000 2.97 0.00 45.63 4.02
1557 2584 0.101579 CAAAACCCACACCGGTTGAC 59.898 55.000 2.97 0.00 45.63 3.18
1558 2585 1.668101 GCAAAACCCACACCGGTTGA 61.668 55.000 2.97 0.00 45.63 3.18
1559 2586 1.227118 GCAAAACCCACACCGGTTG 60.227 57.895 2.97 7.10 45.63 3.77
1561 2588 2.835895 GGCAAAACCCACACCGGT 60.836 61.111 0.00 0.00 37.93 5.28
2203 3234 3.379865 GATGAACCCGCACCGGCTA 62.380 63.158 0.00 0.00 46.86 3.93
2218 3249 3.190849 CCGTGGCTGCAGTCGATG 61.191 66.667 14.71 8.27 0.00 3.84
2365 3396 0.744771 GGAAGAAGACGGGGATGCAC 60.745 60.000 0.00 0.00 0.00 4.57
2605 3636 4.304413 TCGAACCTCACCCGGGGA 62.304 66.667 27.92 18.14 0.00 4.81
2609 3640 3.771160 CCCCTCGAACCTCACCCG 61.771 72.222 0.00 0.00 0.00 5.28
2721 3752 3.559069 CCCTTAGCAACCATCACATCAT 58.441 45.455 0.00 0.00 0.00 2.45
2737 3768 3.117093 AGCTATAGTGTCAGGAGCCCTTA 60.117 47.826 0.84 0.00 33.50 2.69
2783 3816 7.544217 ACAACAAAACTAGTACAAAGGCAAAAG 59.456 33.333 0.00 0.00 0.00 2.27
2788 3821 5.231357 GCAACAACAAAACTAGTACAAAGGC 59.769 40.000 0.00 0.00 0.00 4.35
2789 3822 6.560711 AGCAACAACAAAACTAGTACAAAGG 58.439 36.000 0.00 0.00 0.00 3.11
2836 3877 9.490379 GAGAATTAGACGGACACCATATAATTT 57.510 33.333 0.00 0.00 0.00 1.82
2837 3878 8.647796 TGAGAATTAGACGGACACCATATAATT 58.352 33.333 0.00 0.00 0.00 1.40
2838 3879 8.190326 TGAGAATTAGACGGACACCATATAAT 57.810 34.615 0.00 0.00 0.00 1.28
2839 3880 7.287005 ACTGAGAATTAGACGGACACCATATAA 59.713 37.037 0.00 0.00 0.00 0.98
2846 3887 5.564048 ACTACTGAGAATTAGACGGACAC 57.436 43.478 0.00 0.00 0.00 3.67
2867 3910 5.163540 ACTGTACGGAGTGAGAATCCATTAC 60.164 44.000 9.17 0.00 45.73 1.89
2883 3929 1.974680 GAAGAAACGACGACTGTACGG 59.025 52.381 0.00 0.00 37.61 4.02
2895 3941 6.611381 TCATAGATGGCAAAAAGAAGAAACG 58.389 36.000 0.00 0.00 0.00 3.60
2917 3963 9.797642 ACAATAGATGGCAACTATGATTAATCA 57.202 29.630 20.07 20.07 38.36 2.57
2923 3969 9.797642 TGATTAACAATAGATGGCAACTATGAT 57.202 29.630 16.78 9.40 31.96 2.45
2924 3970 9.276590 CTGATTAACAATAGATGGCAACTATGA 57.723 33.333 16.78 2.36 31.96 2.15
2925 3971 8.509690 CCTGATTAACAATAGATGGCAACTATG 58.490 37.037 16.78 13.06 31.96 2.23
2926 3972 8.439971 TCCTGATTAACAATAGATGGCAACTAT 58.560 33.333 11.12 11.12 37.61 2.12
2927 3973 7.801104 TCCTGATTAACAATAGATGGCAACTA 58.199 34.615 6.96 6.96 37.61 2.24
2928 3974 6.662755 TCCTGATTAACAATAGATGGCAACT 58.337 36.000 1.95 1.95 37.61 3.16
2929 3975 6.942532 TCCTGATTAACAATAGATGGCAAC 57.057 37.500 0.00 0.00 0.00 4.17
2930 3976 9.288576 CTTATCCTGATTAACAATAGATGGCAA 57.711 33.333 0.00 0.00 0.00 4.52
2931 3977 8.659527 TCTTATCCTGATTAACAATAGATGGCA 58.340 33.333 0.00 0.00 0.00 4.92
2932 3978 9.160496 CTCTTATCCTGATTAACAATAGATGGC 57.840 37.037 0.00 0.00 0.00 4.40
2933 3979 9.160496 GCTCTTATCCTGATTAACAATAGATGG 57.840 37.037 0.00 0.00 0.00 3.51
2934 3980 9.941325 AGCTCTTATCCTGATTAACAATAGATG 57.059 33.333 0.00 0.00 0.00 2.90
2966 4012 8.013378 CGTTAGTGTTTCCGTCTTTTTATCATT 58.987 33.333 0.00 0.00 0.00 2.57
2967 4013 7.515643 CGTTAGTGTTTCCGTCTTTTTATCAT 58.484 34.615 0.00 0.00 0.00 2.45
2968 4014 6.564499 GCGTTAGTGTTTCCGTCTTTTTATCA 60.564 38.462 0.00 0.00 0.00 2.15
2969 4015 5.787062 GCGTTAGTGTTTCCGTCTTTTTATC 59.213 40.000 0.00 0.00 0.00 1.75
2970 4016 5.334337 GGCGTTAGTGTTTCCGTCTTTTTAT 60.334 40.000 0.00 0.00 0.00 1.40
2971 4017 4.024977 GGCGTTAGTGTTTCCGTCTTTTTA 60.025 41.667 0.00 0.00 0.00 1.52
2972 4018 3.242837 GGCGTTAGTGTTTCCGTCTTTTT 60.243 43.478 0.00 0.00 0.00 1.94
2973 4019 2.288729 GGCGTTAGTGTTTCCGTCTTTT 59.711 45.455 0.00 0.00 0.00 2.27
2974 4020 1.869132 GGCGTTAGTGTTTCCGTCTTT 59.131 47.619 0.00 0.00 0.00 2.52
2975 4021 1.505425 GGCGTTAGTGTTTCCGTCTT 58.495 50.000 0.00 0.00 0.00 3.01
2976 4022 0.320160 GGGCGTTAGTGTTTCCGTCT 60.320 55.000 0.00 0.00 0.00 4.18
2977 4023 0.600782 TGGGCGTTAGTGTTTCCGTC 60.601 55.000 0.00 0.00 0.00 4.79
2997 4043 1.883926 GTTAGGAAACGCCCACACATT 59.116 47.619 0.00 0.00 37.37 2.71
2999 4045 0.470766 AGTTAGGAAACGCCCACACA 59.529 50.000 0.00 0.00 40.73 3.72
3014 4060 0.806868 CCAGACGTGTAGGCGAGTTA 59.193 55.000 0.00 0.00 35.59 2.24
3075 4121 6.482308 GTCCTACGTGGCACATTAAATCTAAT 59.518 38.462 19.09 0.00 44.52 1.73
3076 4122 5.813672 GTCCTACGTGGCACATTAAATCTAA 59.186 40.000 19.09 0.00 44.52 2.10
3078 4124 4.189231 GTCCTACGTGGCACATTAAATCT 58.811 43.478 19.09 0.00 44.52 2.40
3115 4161 1.600916 GGGCAAACTCTCCAACGCT 60.601 57.895 0.00 0.00 0.00 5.07
3168 4214 2.038557 ACAGAAACTAGTTCGCCCACAT 59.961 45.455 8.95 0.00 41.52 3.21
3189 4235 0.904649 CTAGGTGATGGCTGTGTGGA 59.095 55.000 0.00 0.00 0.00 4.02
3201 4247 2.348104 ACGCGCATGACCTAGGTGA 61.348 57.895 22.10 12.58 0.00 4.02
3236 4284 1.899814 ACATATGAGTGTCGTGTGGGT 59.100 47.619 10.38 0.00 30.03 4.51
3342 4392 1.136565 GTTGCCACATACGCGCAAT 59.863 52.632 5.73 0.00 43.78 3.56
3352 4402 2.621055 GTGTGTTTATCTGGTTGCCACA 59.379 45.455 0.00 0.00 0.00 4.17
3387 4439 9.467258 CCAATCATAGTTGCCATTTATTGTTAG 57.533 33.333 0.00 0.00 0.00 2.34
3396 4448 3.701040 GTGGTCCAATCATAGTTGCCATT 59.299 43.478 0.00 0.00 0.00 3.16
3424 4476 5.555966 TGCCATGTGTGTTTATCTAGTTGA 58.444 37.500 0.00 0.00 0.00 3.18
3432 4484 5.070001 ACAGTAGTTGCCATGTGTGTTTAT 58.930 37.500 0.00 0.00 0.00 1.40
3524 4578 5.755849 AGTATAGTTGCCATGCCTAAGTTT 58.244 37.500 0.00 0.00 0.00 2.66
3527 4581 6.525629 ACTAAGTATAGTTGCCATGCCTAAG 58.474 40.000 2.90 0.00 39.36 2.18
3532 4586 6.677781 TTTGACTAAGTATAGTTGCCATGC 57.322 37.500 2.90 0.00 42.47 4.06
3573 4627 4.159244 TGGCAGGTGTAGTTGTAAAAGT 57.841 40.909 0.00 0.00 0.00 2.66
3589 4643 1.691976 TGTAGTTATCCGGGATGGCAG 59.308 52.381 19.82 0.00 37.80 4.85
3643 4697 1.229428 CTACGTTAGGTATCCCGCGA 58.771 55.000 8.23 0.00 35.12 5.87
3667 4721 2.537633 AAATGCCCACATGTCCTGAT 57.462 45.000 0.00 0.00 36.36 2.90
3675 4729 4.506758 GCATGAAGTAAAAATGCCCACAT 58.493 39.130 0.00 0.00 40.65 3.21
3723 4777 1.241315 GCCACACGCCCAACAAGTAT 61.241 55.000 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.