Multiple sequence alignment - TraesCS2A01G450400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G450400 chr2A 100.000 4116 0 0 1001 5116 699876936 699872821 0.000000e+00 7601.0
1 TraesCS2A01G450400 chr2A 100.000 551 0 0 1 551 699877936 699877386 0.000000e+00 1018.0
2 TraesCS2A01G450400 chr2A 95.676 185 7 1 4932 5116 65161967 65162150 3.870000e-76 296.0
3 TraesCS2A01G450400 chr2B 93.928 2355 122 18 1904 4246 668383182 668380837 0.000000e+00 3537.0
4 TraesCS2A01G450400 chr2B 92.050 478 35 2 1403 1877 668383655 668383178 0.000000e+00 669.0
5 TraesCS2A01G450400 chr2B 91.667 408 23 5 1001 1401 668384118 668383715 5.790000e-154 555.0
6 TraesCS2A01G450400 chr2B 90.135 223 10 6 330 551 668384369 668384158 3.900000e-71 279.0
7 TraesCS2A01G450400 chr2B 87.179 234 24 5 4245 4474 668380869 668380638 1.410000e-65 261.0
8 TraesCS2A01G450400 chr2B 80.392 306 40 10 9 301 668384739 668384441 1.120000e-51 215.0
9 TraesCS2A01G450400 chr2B 100.000 32 0 0 1979 2010 142869513 142869544 5.530000e-05 60.2
10 TraesCS2A01G450400 chr2D 92.065 2470 153 21 2040 4474 559319325 559316864 0.000000e+00 3435.0
11 TraesCS2A01G450400 chr2D 91.000 1000 70 9 1001 1987 559320316 559319324 0.000000e+00 1330.0
12 TraesCS2A01G450400 chr2D 89.781 274 22 3 4564 4837 194750236 194750503 3.790000e-91 346.0
13 TraesCS2A01G450400 chr2D 88.835 206 14 4 346 551 559320551 559320355 1.420000e-60 244.0
14 TraesCS2A01G450400 chr2D 79.412 306 43 10 9 301 559320924 559320626 1.120000e-46 198.0
15 TraesCS2A01G450400 chr5A 91.575 273 17 3 4568 4840 540627474 540627208 6.260000e-99 372.0
16 TraesCS2A01G450400 chr5A 90.734 259 21 3 4584 4840 165330890 165330633 4.910000e-90 342.0
17 TraesCS2A01G450400 chr5A 100.000 101 0 0 4832 4932 258038403 258038303 2.430000e-43 187.0
18 TraesCS2A01G450400 chr5A 100.000 101 0 0 4832 4932 391105284 391105384 2.430000e-43 187.0
19 TraesCS2A01G450400 chr5A 100.000 101 0 0 4832 4932 404145658 404145758 2.430000e-43 187.0
20 TraesCS2A01G450400 chr5A 90.741 54 5 0 1985 2038 29677699 29677646 7.110000e-09 73.1
21 TraesCS2A01G450400 chr7A 91.209 273 14 4 4568 4840 93490685 93490423 3.770000e-96 363.0
22 TraesCS2A01G450400 chr7A 96.257 187 6 1 4930 5116 643242689 643242504 6.440000e-79 305.0
23 TraesCS2A01G450400 chr7A 95.676 185 8 0 4932 5116 23262976 23263160 1.080000e-76 298.0
24 TraesCS2A01G450400 chr7A 89.474 57 5 1 1983 2039 594555128 594555183 2.560000e-08 71.3
25 TraesCS2A01G450400 chr4A 92.520 254 17 2 4584 4837 441498993 441499244 3.770000e-96 363.0
26 TraesCS2A01G450400 chr4A 91.732 254 20 1 4584 4837 112768641 112768389 8.150000e-93 351.0
27 TraesCS2A01G450400 chr4A 96.277 188 6 1 4930 5116 40450089 40449902 1.790000e-79 307.0
28 TraesCS2A01G450400 chr4A 94.330 194 7 3 4924 5116 636058327 636058137 1.390000e-75 294.0
29 TraesCS2A01G450400 chr3D 91.418 268 16 5 4570 4837 81841272 81841532 1.350000e-95 361.0
30 TraesCS2A01G450400 chr3D 100.000 30 0 0 1981 2010 197182298 197182327 7.160000e-04 56.5
31 TraesCS2A01G450400 chr3A 91.860 258 18 3 4584 4840 196422003 196421748 1.750000e-94 357.0
32 TraesCS2A01G450400 chr3A 89.416 274 23 4 4564 4837 616279181 616279448 1.760000e-89 340.0
33 TraesCS2A01G450400 chr3A 96.216 185 7 0 4932 5116 56722586 56722770 2.310000e-78 303.0
34 TraesCS2A01G450400 chr3A 95.676 185 8 0 4932 5116 30524583 30524767 1.080000e-76 298.0
35 TraesCS2A01G450400 chr6A 95.722 187 6 1 4932 5116 45000136 44999950 2.990000e-77 300.0
36 TraesCS2A01G450400 chr4D 79.680 438 68 18 4673 5099 111866287 111865860 3.870000e-76 296.0
37 TraesCS2A01G450400 chr4D 91.071 56 2 3 1987 2039 352128569 352128624 7.110000e-09 73.1
38 TraesCS2A01G450400 chr6B 100.000 101 0 0 4832 4932 547713779 547713679 2.430000e-43 187.0
39 TraesCS2A01G450400 chr1B 100.000 101 0 0 4832 4932 480414070 480414170 2.430000e-43 187.0
40 TraesCS2A01G450400 chr1A 100.000 101 0 0 4832 4932 52706270 52706370 2.430000e-43 187.0
41 TraesCS2A01G450400 chr1A 100.000 101 0 0 4832 4932 118280938 118281038 2.430000e-43 187.0
42 TraesCS2A01G450400 chr1A 100.000 101 0 0 4832 4932 531312463 531312363 2.430000e-43 187.0
43 TraesCS2A01G450400 chr1A 100.000 32 0 0 2008 2039 457119608 457119577 5.530000e-05 60.2
44 TraesCS2A01G450400 chr1A 100.000 31 0 0 1980 2010 550888594 550888564 1.990000e-04 58.4
45 TraesCS2A01G450400 chr1A 100.000 30 0 0 1982 2011 132414025 132413996 7.160000e-04 56.5
46 TraesCS2A01G450400 chr7D 91.228 57 4 1 1983 2039 518794464 518794519 5.490000e-10 76.8
47 TraesCS2A01G450400 chr4B 97.222 36 1 0 2005 2040 660877136 660877171 1.540000e-05 62.1
48 TraesCS2A01G450400 chr4B 97.222 36 1 0 2005 2040 660907383 660907418 1.540000e-05 62.1
49 TraesCS2A01G450400 chr5D 92.857 42 2 1 1983 2024 520097405 520097445 5.530000e-05 60.2
50 TraesCS2A01G450400 chr5D 90.244 41 2 2 1983 2022 11219961 11219922 9.000000e-03 52.8
51 TraesCS2A01G450400 chr5D 100.000 28 0 0 1983 2010 424210804 424210777 9.000000e-03 52.8
52 TraesCS2A01G450400 chr7B 100.000 30 0 0 1981 2010 213466278 213466307 7.160000e-04 56.5
53 TraesCS2A01G450400 chr6D 96.875 32 1 0 1979 2010 26706926 26706957 3.000000e-03 54.7
54 TraesCS2A01G450400 chr1D 100.000 29 0 0 1983 2011 350300746 350300718 3.000000e-03 54.7
55 TraesCS2A01G450400 chr1D 96.875 32 0 1 1979 2010 57502498 57502468 9.000000e-03 52.8
56 TraesCS2A01G450400 chrUn 100.000 28 0 0 1983 2010 110238067 110238094 9.000000e-03 52.8
57 TraesCS2A01G450400 chrUn 100.000 28 0 0 1983 2010 110307469 110307496 9.000000e-03 52.8
58 TraesCS2A01G450400 chrUn 100.000 28 0 0 1983 2010 110321689 110321716 9.000000e-03 52.8
59 TraesCS2A01G450400 chrUn 100.000 28 0 0 1983 2010 184209171 184209144 9.000000e-03 52.8
60 TraesCS2A01G450400 chrUn 100.000 28 0 0 1983 2010 184219298 184219271 9.000000e-03 52.8
61 TraesCS2A01G450400 chrUn 100.000 28 0 0 1983 2010 187694389 187694416 9.000000e-03 52.8
62 TraesCS2A01G450400 chrUn 100.000 28 0 0 1983 2010 187700086 187700113 9.000000e-03 52.8
63 TraesCS2A01G450400 chrUn 100.000 28 0 0 1983 2010 254193332 254193359 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G450400 chr2A 699872821 699877936 5115 True 4309.500000 7601 100.000000 1 5116 2 chr2A.!!$R1 5115
1 TraesCS2A01G450400 chr2B 668380638 668384739 4101 True 919.333333 3537 89.225167 9 4474 6 chr2B.!!$R1 4465
2 TraesCS2A01G450400 chr2D 559316864 559320924 4060 True 1301.750000 3435 87.828000 9 4474 4 chr2D.!!$R1 4465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 1.195900 GGTTTTCGTACGATGCAGCAA 59.804 47.619 20.27 6.24 0.00 3.91 F
1333 1399 1.123928 CCCTGATCTGGTAGTGTCCC 58.876 60.000 16.63 0.00 0.00 4.46 F
1375 1441 0.108424 ATCACTGAGCTTCTCCGCAC 60.108 55.000 0.00 0.00 0.00 5.34 F
3207 3381 0.179092 AAGGTGGGTACGATAAGCGC 60.179 55.000 0.00 0.00 46.04 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1355 1421 0.108472 TGCGGAGAAGCTCAGTGATG 60.108 55.0 0.00 0.00 38.13 3.07 R
2532 2702 0.469917 ATACAGTTCCGGATGCCCAG 59.530 55.0 4.15 0.00 0.00 4.45 R
3369 3543 0.878416 TCTTGCGCAAATGGTGGTAC 59.122 50.0 25.01 0.00 0.00 3.34 R
4362 4566 0.042448 GACAGAACCGCGTTGACAAC 60.042 55.0 4.92 8.34 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.929808 ACTGCTAAGTCGGTGAATTAAGTG 59.070 41.667 0.00 0.00 26.77 3.16
32 33 3.418684 AAGTCGGTGAATTAAGTGGCT 57.581 42.857 0.00 0.00 0.00 4.75
39 40 6.038271 GTCGGTGAATTAAGTGGCTAAATCAT 59.962 38.462 0.00 0.00 0.00 2.45
50 51 8.409358 AAGTGGCTAAATCATTGACTTAACTT 57.591 30.769 0.00 0.00 0.00 2.66
51 52 9.515226 AAGTGGCTAAATCATTGACTTAACTTA 57.485 29.630 3.02 0.00 0.00 2.24
52 53 9.167311 AGTGGCTAAATCATTGACTTAACTTAG 57.833 33.333 0.00 0.00 0.00 2.18
53 54 9.162764 GTGGCTAAATCATTGACTTAACTTAGA 57.837 33.333 0.00 0.00 0.00 2.10
54 55 9.162764 TGGCTAAATCATTGACTTAACTTAGAC 57.837 33.333 0.00 0.00 0.00 2.59
55 56 9.384764 GGCTAAATCATTGACTTAACTTAGACT 57.615 33.333 0.00 0.00 0.00 3.24
74 75 4.016444 GACTATCTTGTCAAAATGCCCCA 58.984 43.478 0.00 0.00 36.97 4.96
75 76 3.763897 ACTATCTTGTCAAAATGCCCCAC 59.236 43.478 0.00 0.00 0.00 4.61
90 91 1.950909 CCCCACGTTTCTTTGCACTTA 59.049 47.619 0.00 0.00 0.00 2.24
109 110 5.303333 CACTTAATAAATTACCCCCGCCAAT 59.697 40.000 0.00 0.00 0.00 3.16
110 111 5.537295 ACTTAATAAATTACCCCCGCCAATC 59.463 40.000 0.00 0.00 0.00 2.67
149 150 6.589830 TGAAGAGTAAAATCAATAGAGCGC 57.410 37.500 0.00 0.00 0.00 5.92
157 158 2.209838 TCAATAGAGCGCTGCTACAC 57.790 50.000 18.48 0.00 39.88 2.90
170 171 3.185594 GCTGCTACACACACGACAAATTA 59.814 43.478 0.00 0.00 0.00 1.40
174 175 5.120053 TGCTACACACACGACAAATTATGAG 59.880 40.000 0.00 0.00 0.00 2.90
177 178 4.213270 ACACACACGACAAATTATGAGTGG 59.787 41.667 16.19 0.00 41.73 4.00
183 184 5.563751 CACGACAAATTATGAGTGGTTTTCG 59.436 40.000 0.00 0.00 37.47 3.46
186 187 6.735063 CGACAAATTATGAGTGGTTTTCGTAC 59.265 38.462 0.00 0.00 0.00 3.67
193 194 2.066262 AGTGGTTTTCGTACGATGCAG 58.934 47.619 20.27 0.00 0.00 4.41
196 197 1.195900 GGTTTTCGTACGATGCAGCAA 59.804 47.619 20.27 6.24 0.00 3.91
205 206 2.093890 ACGATGCAGCAAATCAATCCA 58.906 42.857 1.53 0.00 0.00 3.41
208 209 3.734231 CGATGCAGCAAATCAATCCATTC 59.266 43.478 1.53 0.00 0.00 2.67
234 235 4.045104 CGTAGAGCAAAACGAGATAGCAT 58.955 43.478 0.00 0.00 41.55 3.79
236 237 4.128925 AGAGCAAAACGAGATAGCATCA 57.871 40.909 0.00 0.00 0.00 3.07
273 287 1.279527 GATCAACCGTCGTTCGCACA 61.280 55.000 0.00 0.00 38.35 4.57
274 288 1.282248 ATCAACCGTCGTTCGCACAG 61.282 55.000 0.00 0.00 38.35 3.66
283 297 2.153247 GTCGTTCGCACAGTAGTTTCAG 59.847 50.000 0.00 0.00 0.00 3.02
284 298 2.124903 CGTTCGCACAGTAGTTTCAGT 58.875 47.619 0.00 0.00 0.00 3.41
306 320 9.310449 TCAGTATCAATATTTAGTACTCCCTCC 57.690 37.037 0.00 0.00 0.00 4.30
307 321 9.090103 CAGTATCAATATTTAGTACTCCCTCCA 57.910 37.037 0.00 0.00 0.00 3.86
349 409 7.586747 CGTTTAGGGAGTAATTTTTACAGCAA 58.413 34.615 0.74 0.00 0.00 3.91
367 427 7.341445 ACAGCAACATCAACCTTTAGTTAAA 57.659 32.000 0.00 0.00 36.18 1.52
369 429 8.421002 ACAGCAACATCAACCTTTAGTTAAATT 58.579 29.630 0.00 0.00 36.18 1.82
370 430 9.906660 CAGCAACATCAACCTTTAGTTAAATTA 57.093 29.630 0.00 0.00 36.18 1.40
371 431 9.908152 AGCAACATCAACCTTTAGTTAAATTAC 57.092 29.630 0.00 0.00 36.18 1.89
372 432 9.908152 GCAACATCAACCTTTAGTTAAATTACT 57.092 29.630 0.00 0.00 36.18 2.24
1213 1279 1.261238 CCCTCCTCCTCTCACCACAC 61.261 65.000 0.00 0.00 0.00 3.82
1321 1387 3.492482 GCTAGAAGCTTGAGTCCCTGATC 60.492 52.174 2.10 0.00 38.45 2.92
1323 1389 2.500910 AGAAGCTTGAGTCCCTGATCTG 59.499 50.000 2.10 0.00 0.00 2.90
1331 1397 2.691011 GAGTCCCTGATCTGGTAGTGTC 59.309 54.545 16.63 3.62 0.00 3.67
1332 1398 1.757699 GTCCCTGATCTGGTAGTGTCC 59.242 57.143 16.63 0.00 0.00 4.02
1333 1399 1.123928 CCCTGATCTGGTAGTGTCCC 58.876 60.000 16.63 0.00 0.00 4.46
1354 1420 2.682155 AGATTCTTCAAGGAGGACGC 57.318 50.000 0.00 0.00 0.00 5.19
1355 1421 1.208293 AGATTCTTCAAGGAGGACGCC 59.792 52.381 0.00 0.00 0.00 5.68
1375 1441 0.108424 ATCACTGAGCTTCTCCGCAC 60.108 55.000 0.00 0.00 0.00 5.34
1424 1549 2.281539 TTCGAGTAGACTGGTGGTCA 57.718 50.000 0.00 0.00 46.72 4.02
1448 1573 5.531122 TCAGGTGTGGTATAAGAGTATGC 57.469 43.478 0.00 0.00 0.00 3.14
1543 1670 3.944015 AGGAGCAATTACATGACTTCAGC 59.056 43.478 0.00 0.00 0.00 4.26
1551 1678 1.003580 ACATGACTTCAGCGTGGGATT 59.996 47.619 0.00 0.00 0.00 3.01
1586 1713 8.076178 GCAATATGACACTTTCAGTTACAAAGT 58.924 33.333 0.00 0.00 43.46 2.66
1603 1730 4.640201 ACAAAGTGTGTACAGAAGCATTGT 59.360 37.500 0.00 2.23 39.29 2.71
1626 1753 2.286294 GCAGGCGTGATATAGCATATGC 59.714 50.000 20.36 20.36 42.49 3.14
1808 1935 6.031751 ACAGTCTCTGGTAAATCTCTGAAC 57.968 41.667 1.90 0.00 35.51 3.18
1847 1976 3.194062 GCTGAAAGTCTGATAGACCTGC 58.806 50.000 5.41 3.43 46.18 4.85
1852 1981 5.105554 TGAAAGTCTGATAGACCTGCTTCTC 60.106 44.000 5.41 0.00 46.18 2.87
1865 1994 6.320672 AGACCTGCTTCTCAAATTTATCCATG 59.679 38.462 0.00 0.00 0.00 3.66
1872 2001 7.066766 GCTTCTCAAATTTATCCATGTCTGAGT 59.933 37.037 0.00 0.00 32.68 3.41
1873 2002 8.868522 TTCTCAAATTTATCCATGTCTGAGTT 57.131 30.769 0.00 0.00 32.68 3.01
1874 2003 8.272545 TCTCAAATTTATCCATGTCTGAGTTG 57.727 34.615 0.00 0.00 32.68 3.16
1875 2004 6.855836 TCAAATTTATCCATGTCTGAGTTGC 58.144 36.000 0.00 0.00 0.00 4.17
1876 2005 6.433716 TCAAATTTATCCATGTCTGAGTTGCA 59.566 34.615 0.00 0.00 0.00 4.08
1877 2006 7.123098 TCAAATTTATCCATGTCTGAGTTGCAT 59.877 33.333 0.00 0.00 0.00 3.96
1878 2007 7.414222 AATTTATCCATGTCTGAGTTGCATT 57.586 32.000 0.00 0.00 0.00 3.56
1879 2008 8.523915 AATTTATCCATGTCTGAGTTGCATTA 57.476 30.769 0.00 0.00 0.00 1.90
1880 2009 6.925610 TTATCCATGTCTGAGTTGCATTAC 57.074 37.500 0.00 0.00 0.00 1.89
1881 2010 4.284829 TCCATGTCTGAGTTGCATTACA 57.715 40.909 0.00 0.00 0.00 2.41
1882 2011 4.847198 TCCATGTCTGAGTTGCATTACAT 58.153 39.130 0.00 0.00 34.90 2.29
1883 2012 4.877823 TCCATGTCTGAGTTGCATTACATC 59.122 41.667 0.00 0.00 33.28 3.06
1884 2013 4.880120 CCATGTCTGAGTTGCATTACATCT 59.120 41.667 0.00 0.00 33.28 2.90
1885 2014 5.356190 CCATGTCTGAGTTGCATTACATCTT 59.644 40.000 0.00 0.00 33.28 2.40
1886 2015 6.127814 CCATGTCTGAGTTGCATTACATCTTT 60.128 38.462 0.00 0.00 33.28 2.52
1887 2016 6.882610 TGTCTGAGTTGCATTACATCTTTT 57.117 33.333 0.00 0.00 0.00 2.27
1888 2017 7.275888 TGTCTGAGTTGCATTACATCTTTTT 57.724 32.000 0.00 0.00 0.00 1.94
1975 2142 3.896888 TCCATCAGTTCCTGCAAAATGTT 59.103 39.130 0.00 0.00 0.00 2.71
1980 2147 3.991773 CAGTTCCTGCAAAATGTTCCATG 59.008 43.478 0.00 0.00 0.00 3.66
2014 2181 9.892130 CTCCCTCTGTAAAGAAATATAAACACT 57.108 33.333 0.00 0.00 0.00 3.55
2015 2182 9.886132 TCCCTCTGTAAAGAAATATAAACACTC 57.114 33.333 0.00 0.00 0.00 3.51
2051 2218 9.762381 TTTATGGAGGGAGTGTTTTTGTAATAT 57.238 29.630 0.00 0.00 0.00 1.28
2135 2305 7.442666 ACAAGTTTTATTGGACTTCTCTGTCTC 59.557 37.037 0.00 0.00 34.04 3.36
2275 2445 1.377690 TTGGTGGCCCTCCTTTGATA 58.622 50.000 13.97 0.00 0.00 2.15
2532 2702 0.249398 AGCCACGACTGGTATTGTCC 59.751 55.000 0.00 0.00 40.17 4.02
2728 2898 2.762887 TGTGGTCTTCATGCTAGAGGAG 59.237 50.000 0.00 0.00 0.00 3.69
2742 2912 1.939769 GAGGAGTCGAGCCTGGTGTC 61.940 65.000 11.28 0.00 35.44 3.67
2760 2930 0.554305 TCCTATACCCAGCGGTCTCA 59.446 55.000 0.00 0.00 43.29 3.27
3039 3212 0.607489 GCAACCTGGTGATGCTCTGT 60.607 55.000 14.72 0.00 37.12 3.41
3112 3286 4.157105 CCCCCTTTATTCACAGGTTTAACG 59.843 45.833 0.00 0.00 0.00 3.18
3113 3287 4.157105 CCCCTTTATTCACAGGTTTAACGG 59.843 45.833 0.00 0.00 0.00 4.44
3173 3347 2.092103 ACCACTGGCCACTGTTTTCTTA 60.092 45.455 0.00 0.00 0.00 2.10
3175 3349 2.032030 CACTGGCCACTGTTTTCTTACG 60.032 50.000 0.00 0.00 0.00 3.18
3179 3353 3.444388 TGGCCACTGTTTTCTTACGTTTT 59.556 39.130 0.00 0.00 0.00 2.43
3207 3381 0.179092 AAGGTGGGTACGATAAGCGC 60.179 55.000 0.00 0.00 46.04 5.92
3261 3435 1.446907 AAAGATTGGCAGCGACTGAG 58.553 50.000 10.46 0.00 32.44 3.35
3363 3537 6.628919 GTGTTGTACACTCCAAAGGTAAAT 57.371 37.500 0.00 0.00 45.27 1.40
3369 3543 5.560966 ACACTCCAAAGGTAAATAATGCG 57.439 39.130 0.00 0.00 0.00 4.73
3382 3556 3.708563 ATAATGCGTACCACCATTTGC 57.291 42.857 6.43 0.00 33.93 3.68
3384 3558 2.202427 GCGTACCACCATTTGCGC 60.202 61.111 0.00 0.00 38.15 6.09
3395 3569 3.425193 CACCATTTGCGCAAGACTTTTAC 59.575 43.478 23.68 0.00 43.02 2.01
3444 3618 5.300539 CAGCCTACATGTCTGACACTACTAT 59.699 44.000 13.50 0.00 0.00 2.12
3519 3693 1.532505 CCTGTAATCGCATGCAACAGC 60.533 52.381 23.66 11.14 36.96 4.40
3540 3714 1.418637 GGTGGTCCAGTGGAAACAGTA 59.581 52.381 15.09 0.00 43.90 2.74
3549 3723 3.736252 CAGTGGAAACAGTAGTGAACGAG 59.264 47.826 4.09 0.00 43.90 4.18
3558 3732 1.592400 TAGTGAACGAGGCGACAGGG 61.592 60.000 0.00 0.00 0.00 4.45
3588 3762 1.003696 GATCCCTCCCCCATCGAATTC 59.996 57.143 0.00 0.00 0.00 2.17
3591 3765 1.131638 CCTCCCCCATCGAATTCTCA 58.868 55.000 3.52 0.00 0.00 3.27
3729 3903 4.100189 AGCTATGTCCTCAATGTCTACCAC 59.900 45.833 0.00 0.00 0.00 4.16
3806 3980 5.368145 TGAGTAGCACATTAACATCATCCC 58.632 41.667 0.00 0.00 0.00 3.85
3856 4031 8.644795 AGTTCTGACTTTGATGTACCACACATG 61.645 40.741 0.00 0.00 39.56 3.21
3914 4089 1.826720 ACCTTGCATTATTGGCCTGTG 59.173 47.619 3.32 0.00 0.00 3.66
3966 4141 2.514803 TCTCTCGGATATTCATGCGGA 58.485 47.619 0.00 0.00 45.16 5.54
3968 4143 1.068541 TCTCGGATATTCATGCGGACG 60.069 52.381 0.00 0.00 45.16 4.79
4085 4261 3.334583 TCTTGTTGGTCATGGTAGCTC 57.665 47.619 0.00 0.00 0.00 4.09
4089 4265 0.108186 TTGGTCATGGTAGCTCTGCG 60.108 55.000 0.00 0.00 0.00 5.18
4106 4282 3.565482 TCTGCGAATTATTTCCTGATGGC 59.435 43.478 0.00 0.00 0.00 4.40
4107 4283 3.286353 TGCGAATTATTTCCTGATGGCA 58.714 40.909 0.00 0.00 0.00 4.92
4111 4287 3.979501 ATTATTTCCTGATGGCACCCT 57.020 42.857 0.00 0.00 0.00 4.34
4129 4306 4.979815 CACCCTTTTGTTAATTCGGTGAAC 59.020 41.667 0.00 0.00 41.45 3.18
4148 4325 0.659427 CGATTGCGCATCATCCAACT 59.341 50.000 12.75 0.00 0.00 3.16
4152 4329 0.251634 TGCGCATCATCCAACTACCA 59.748 50.000 5.66 0.00 0.00 3.25
4154 4331 1.265095 GCGCATCATCCAACTACCATG 59.735 52.381 0.30 0.00 0.00 3.66
4171 4349 0.687354 ATGTTTCTCCACGGTCTGCT 59.313 50.000 0.00 0.00 0.00 4.24
4194 4375 3.924073 GCCATACGTTTTGGGAAATGTTC 59.076 43.478 16.35 0.00 41.08 3.18
4204 4405 1.134946 GGGAAATGTTCGCCTGAATGG 59.865 52.381 0.00 0.00 36.29 3.16
4218 4420 1.897133 TGAATGGCAAGCAAGCAATCT 59.103 42.857 0.00 0.00 35.83 2.40
4220 4422 1.263356 ATGGCAAGCAAGCAATCTGT 58.737 45.000 0.00 0.00 35.83 3.41
4224 4426 2.229784 GGCAAGCAAGCAATCTGTTACT 59.770 45.455 2.78 0.00 35.83 2.24
4225 4427 3.440173 GGCAAGCAAGCAATCTGTTACTA 59.560 43.478 2.78 0.00 35.83 1.82
4226 4428 4.437930 GGCAAGCAAGCAATCTGTTACTAG 60.438 45.833 2.78 0.00 35.83 2.57
4244 4446 5.947228 ACTAGATGTCAAAATGGTGTGTG 57.053 39.130 0.00 0.00 0.00 3.82
4253 4455 2.869233 AATGGTGTGTGCAAACTGAC 57.131 45.000 8.83 0.00 0.00 3.51
4254 4456 0.662619 ATGGTGTGTGCAAACTGACG 59.337 50.000 8.83 0.00 0.00 4.35
4273 4475 1.562575 GCAGTGCCAAAATGCTGTGC 61.563 55.000 2.85 0.00 37.00 4.57
4279 4481 0.731514 CCAAAATGCTGTGCGCTGAG 60.732 55.000 9.73 5.31 40.11 3.35
4292 4495 1.535462 GCGCTGAGCCAAGAGTTAAAA 59.465 47.619 0.00 0.00 40.81 1.52
4297 4500 5.504665 CGCTGAGCCAAGAGTTAAAATATGG 60.505 44.000 0.00 0.00 0.00 2.74
4337 4540 4.950050 AGAAACTCTCGAGTGTGAACAAT 58.050 39.130 19.97 1.36 41.58 2.71
4350 4553 7.164230 AGTGTGAACAATCAAAGTAAAACCA 57.836 32.000 0.00 0.00 37.30 3.67
4351 4554 7.257722 AGTGTGAACAATCAAAGTAAAACCAG 58.742 34.615 0.00 0.00 37.30 4.00
4354 4558 7.122055 TGTGAACAATCAAAGTAAAACCAGTCT 59.878 33.333 0.00 0.00 37.30 3.24
4362 4566 6.650807 TCAAAGTAAAACCAGTCTATCTGCAG 59.349 38.462 7.63 7.63 42.38 4.41
4363 4567 5.746990 AGTAAAACCAGTCTATCTGCAGT 57.253 39.130 14.67 3.75 42.38 4.40
4425 4633 1.197430 AGAGGGAACTGGGTCTGCAG 61.197 60.000 7.63 7.63 44.43 4.41
4439 4647 2.023673 TCTGCAGGGTCAAAAACTGTG 58.976 47.619 15.13 0.00 34.79 3.66
4442 4650 1.039856 CAGGGTCAAAAACTGTGGGG 58.960 55.000 0.00 0.00 0.00 4.96
4449 4657 3.615056 GTCAAAAACTGTGGGGAAAAACG 59.385 43.478 0.00 0.00 0.00 3.60
4450 4658 2.933260 CAAAAACTGTGGGGAAAAACGG 59.067 45.455 0.00 0.00 0.00 4.44
4467 4677 1.651240 CGGAAGTCTACGGCTCGGAA 61.651 60.000 0.00 0.00 0.00 4.30
4468 4678 0.100861 GGAAGTCTACGGCTCGGAAG 59.899 60.000 0.00 0.00 0.00 3.46
4469 4679 0.810016 GAAGTCTACGGCTCGGAAGT 59.190 55.000 0.00 0.00 0.00 3.01
4470 4680 2.012673 GAAGTCTACGGCTCGGAAGTA 58.987 52.381 0.00 0.00 0.00 2.24
4471 4681 2.345124 AGTCTACGGCTCGGAAGTAT 57.655 50.000 0.00 0.00 0.00 2.12
4472 4682 3.482156 AGTCTACGGCTCGGAAGTATA 57.518 47.619 0.00 0.00 0.00 1.47
4473 4683 4.018484 AGTCTACGGCTCGGAAGTATAT 57.982 45.455 0.00 0.00 0.00 0.86
4474 4684 3.752222 AGTCTACGGCTCGGAAGTATATG 59.248 47.826 0.00 0.00 0.00 1.78
4475 4685 3.501445 GTCTACGGCTCGGAAGTATATGT 59.499 47.826 0.00 0.00 0.00 2.29
4476 4686 4.692625 GTCTACGGCTCGGAAGTATATGTA 59.307 45.833 0.00 0.00 0.00 2.29
4477 4687 5.180117 GTCTACGGCTCGGAAGTATATGTAA 59.820 44.000 0.00 0.00 0.00 2.41
4478 4688 4.924305 ACGGCTCGGAAGTATATGTAAA 57.076 40.909 0.00 0.00 0.00 2.01
4479 4689 5.464030 ACGGCTCGGAAGTATATGTAAAT 57.536 39.130 0.00 0.00 0.00 1.40
4480 4690 5.467705 ACGGCTCGGAAGTATATGTAAATC 58.532 41.667 0.00 0.00 0.00 2.17
4481 4691 4.863131 CGGCTCGGAAGTATATGTAAATCC 59.137 45.833 0.00 0.00 0.00 3.01
4482 4692 5.336531 CGGCTCGGAAGTATATGTAAATCCT 60.337 44.000 0.00 0.00 0.00 3.24
4483 4693 5.869888 GGCTCGGAAGTATATGTAAATCCTG 59.130 44.000 0.00 0.00 0.00 3.86
4484 4694 5.869888 GCTCGGAAGTATATGTAAATCCTGG 59.130 44.000 0.00 0.00 0.00 4.45
4485 4695 6.518537 GCTCGGAAGTATATGTAAATCCTGGT 60.519 42.308 0.00 0.00 0.00 4.00
4486 4696 7.309621 GCTCGGAAGTATATGTAAATCCTGGTA 60.310 40.741 0.00 0.00 0.00 3.25
4487 4697 8.481492 TCGGAAGTATATGTAAATCCTGGTAA 57.519 34.615 0.00 0.00 0.00 2.85
4488 4698 9.096823 TCGGAAGTATATGTAAATCCTGGTAAT 57.903 33.333 0.00 0.00 0.00 1.89
4497 4707 8.868522 ATGTAAATCCTGGTAATATCCATGTG 57.131 34.615 0.00 0.00 36.84 3.21
4498 4708 7.811282 TGTAAATCCTGGTAATATCCATGTGT 58.189 34.615 0.00 0.00 36.84 3.72
4499 4709 8.939932 TGTAAATCCTGGTAATATCCATGTGTA 58.060 33.333 0.00 0.00 36.84 2.90
4500 4710 9.959721 GTAAATCCTGGTAATATCCATGTGTAT 57.040 33.333 0.00 0.00 36.84 2.29
4502 4712 7.813087 ATCCTGGTAATATCCATGTGTATCA 57.187 36.000 0.00 0.00 36.84 2.15
4503 4713 7.813087 TCCTGGTAATATCCATGTGTATCAT 57.187 36.000 0.00 0.00 36.84 2.45
4518 4728 7.855784 TGTGTATCATGGATATTACTCACCT 57.144 36.000 0.00 0.00 0.00 4.00
4519 4729 7.670364 TGTGTATCATGGATATTACTCACCTG 58.330 38.462 0.00 0.00 0.00 4.00
4520 4730 7.290014 TGTGTATCATGGATATTACTCACCTGT 59.710 37.037 0.00 0.00 0.00 4.00
4521 4731 7.600375 GTGTATCATGGATATTACTCACCTGTG 59.400 40.741 0.00 0.00 0.00 3.66
4522 4732 7.508977 TGTATCATGGATATTACTCACCTGTGA 59.491 37.037 0.00 0.00 38.06 3.58
4530 4740 3.403624 TCACCTGTGAGGCCATCC 58.596 61.111 5.01 0.00 39.63 3.51
4531 4741 2.273449 CACCTGTGAGGCCATCCC 59.727 66.667 5.01 0.00 39.63 3.85
4532 4742 3.017581 ACCTGTGAGGCCATCCCC 61.018 66.667 5.01 0.00 39.63 4.81
4533 4743 3.016971 CCTGTGAGGCCATCCCCA 61.017 66.667 5.01 0.00 0.00 4.96
4534 4744 2.615465 CCTGTGAGGCCATCCCCAA 61.615 63.158 5.01 0.00 0.00 4.12
4535 4745 1.616921 CTGTGAGGCCATCCCCAAT 59.383 57.895 5.01 0.00 0.00 3.16
4536 4746 0.754217 CTGTGAGGCCATCCCCAATG 60.754 60.000 5.01 0.00 34.93 2.82
4537 4747 1.307647 GTGAGGCCATCCCCAATGT 59.692 57.895 5.01 0.00 33.13 2.71
4538 4748 0.753111 GTGAGGCCATCCCCAATGTC 60.753 60.000 5.01 0.00 33.13 3.06
4539 4749 0.920763 TGAGGCCATCCCCAATGTCT 60.921 55.000 5.01 0.00 33.13 3.41
4540 4750 0.466922 GAGGCCATCCCCAATGTCTG 60.467 60.000 5.01 0.00 33.13 3.51
4541 4751 0.920763 AGGCCATCCCCAATGTCTGA 60.921 55.000 5.01 0.00 33.13 3.27
4542 4752 0.466922 GGCCATCCCCAATGTCTGAG 60.467 60.000 0.00 0.00 33.13 3.35
4543 4753 0.257039 GCCATCCCCAATGTCTGAGT 59.743 55.000 0.00 0.00 33.13 3.41
4544 4754 1.748591 GCCATCCCCAATGTCTGAGTC 60.749 57.143 0.00 0.00 33.13 3.36
4545 4755 1.842562 CCATCCCCAATGTCTGAGTCT 59.157 52.381 0.00 0.00 33.13 3.24
4546 4756 2.421107 CCATCCCCAATGTCTGAGTCTG 60.421 54.545 0.00 0.00 33.13 3.51
4547 4757 2.325661 TCCCCAATGTCTGAGTCTGA 57.674 50.000 0.00 0.00 0.00 3.27
4548 4758 1.902508 TCCCCAATGTCTGAGTCTGAC 59.097 52.381 20.07 20.07 33.83 3.51
4549 4759 1.404717 CCCCAATGTCTGAGTCTGACG 60.405 57.143 21.03 10.03 35.55 4.35
4550 4760 1.404717 CCCAATGTCTGAGTCTGACGG 60.405 57.143 21.03 16.59 35.55 4.79
4551 4761 1.273606 CCAATGTCTGAGTCTGACGGT 59.726 52.381 21.03 12.11 35.55 4.83
4552 4762 2.492088 CCAATGTCTGAGTCTGACGGTA 59.508 50.000 21.03 8.06 35.55 4.02
4553 4763 3.131223 CCAATGTCTGAGTCTGACGGTAT 59.869 47.826 21.03 9.74 35.55 2.73
4554 4764 4.382040 CCAATGTCTGAGTCTGACGGTATT 60.382 45.833 21.03 14.09 35.55 1.89
4555 4765 5.163550 CCAATGTCTGAGTCTGACGGTATTA 60.164 44.000 21.03 6.82 35.55 0.98
4556 4766 6.330278 CAATGTCTGAGTCTGACGGTATTAA 58.670 40.000 21.03 6.21 35.55 1.40
4557 4767 6.716934 ATGTCTGAGTCTGACGGTATTAAT 57.283 37.500 21.03 7.96 35.55 1.40
4558 4768 7.818997 ATGTCTGAGTCTGACGGTATTAATA 57.181 36.000 21.03 5.00 35.55 0.98
4559 4769 7.818997 TGTCTGAGTCTGACGGTATTAATAT 57.181 36.000 21.03 0.00 35.55 1.28
4560 4770 8.913487 TGTCTGAGTCTGACGGTATTAATATA 57.087 34.615 21.03 1.21 35.55 0.86
4561 4771 9.000486 TGTCTGAGTCTGACGGTATTAATATAG 58.000 37.037 21.03 0.00 35.55 1.31
4562 4772 9.001542 GTCTGAGTCTGACGGTATTAATATAGT 57.998 37.037 13.59 2.29 0.00 2.12
4565 4775 9.783081 TGAGTCTGACGGTATTAATATAGTACA 57.217 33.333 1.52 3.14 0.00 2.90
4567 4777 9.790344 AGTCTGACGGTATTAATATAGTACAGT 57.210 33.333 1.52 9.67 33.50 3.55
4572 4782 9.780413 GACGGTATTAATATAGTACAGTAAGGC 57.220 37.037 0.00 0.00 31.67 4.35
4573 4783 8.743714 ACGGTATTAATATAGTACAGTAAGGCC 58.256 37.037 0.00 0.00 30.27 5.19
4574 4784 8.964772 CGGTATTAATATAGTACAGTAAGGCCT 58.035 37.037 0.00 0.00 0.00 5.19
4578 4788 9.617053 ATTAATATAGTACAGTAAGGCCTCCTT 57.383 33.333 5.23 3.40 46.63 3.36
4579 4789 7.932683 AATATAGTACAGTAAGGCCTCCTTT 57.067 36.000 5.23 0.39 41.69 3.11
4580 4790 3.983044 AGTACAGTAAGGCCTCCTTTG 57.017 47.619 5.23 5.27 41.69 2.77
4581 4791 2.572104 AGTACAGTAAGGCCTCCTTTGG 59.428 50.000 5.23 0.00 41.69 3.28
4589 4799 4.527426 CCTCCTTTGGCTTGGCTT 57.473 55.556 0.00 0.00 0.00 4.35
4590 4800 3.670105 CCTCCTTTGGCTTGGCTTA 57.330 52.632 0.00 0.00 0.00 3.09
4591 4801 1.467920 CCTCCTTTGGCTTGGCTTAG 58.532 55.000 0.00 0.00 0.00 2.18
4592 4802 1.004745 CCTCCTTTGGCTTGGCTTAGA 59.995 52.381 0.00 0.00 0.00 2.10
4593 4803 2.363683 CTCCTTTGGCTTGGCTTAGAG 58.636 52.381 0.00 0.00 0.00 2.43
4594 4804 1.004745 TCCTTTGGCTTGGCTTAGAGG 59.995 52.381 0.00 0.00 0.00 3.69
4595 4805 1.004745 CCTTTGGCTTGGCTTAGAGGA 59.995 52.381 0.00 0.00 0.00 3.71
4596 4806 2.555227 CCTTTGGCTTGGCTTAGAGGAA 60.555 50.000 0.00 0.00 0.00 3.36
4597 4807 3.359950 CTTTGGCTTGGCTTAGAGGAAT 58.640 45.455 0.00 0.00 0.00 3.01
4598 4808 3.456380 TTGGCTTGGCTTAGAGGAATT 57.544 42.857 0.00 0.00 0.00 2.17
4599 4809 3.456380 TGGCTTGGCTTAGAGGAATTT 57.544 42.857 0.00 0.00 0.00 1.82
4600 4810 3.356290 TGGCTTGGCTTAGAGGAATTTC 58.644 45.455 0.00 0.00 0.00 2.17
4601 4811 3.245229 TGGCTTGGCTTAGAGGAATTTCA 60.245 43.478 0.00 0.00 0.00 2.69
4602 4812 3.956848 GGCTTGGCTTAGAGGAATTTCAT 59.043 43.478 0.00 0.00 0.00 2.57
4603 4813 5.133221 GGCTTGGCTTAGAGGAATTTCATA 58.867 41.667 0.00 0.00 0.00 2.15
4604 4814 5.594317 GGCTTGGCTTAGAGGAATTTCATAA 59.406 40.000 0.00 0.00 0.00 1.90
4605 4815 6.238869 GGCTTGGCTTAGAGGAATTTCATAAG 60.239 42.308 0.00 5.17 0.00 1.73
4606 4816 6.543831 GCTTGGCTTAGAGGAATTTCATAAGA 59.456 38.462 11.19 0.00 0.00 2.10
4607 4817 7.067494 GCTTGGCTTAGAGGAATTTCATAAGAA 59.933 37.037 11.19 0.50 0.00 2.52
4608 4818 9.129532 CTTGGCTTAGAGGAATTTCATAAGAAT 57.870 33.333 11.19 0.00 32.89 2.40
4609 4819 9.479549 TTGGCTTAGAGGAATTTCATAAGAATT 57.520 29.630 11.19 0.00 32.89 2.17
4610 4820 9.479549 TGGCTTAGAGGAATTTCATAAGAATTT 57.520 29.630 11.19 0.00 32.89 1.82
4646 4856 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
4647 4857 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
4648 4858 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
4649 4859 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
4650 4860 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
4651 4861 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
4652 4862 5.014755 TCCTTTAGAGCCCTTTGGTTCATAA 59.985 40.000 0.00 0.00 43.89 1.90
4653 4863 5.358160 CCTTTAGAGCCCTTTGGTTCATAAG 59.642 44.000 0.00 1.74 43.89 1.73
4654 4864 5.772393 TTAGAGCCCTTTGGTTCATAAGA 57.228 39.130 0.00 0.00 43.89 2.10
4655 4865 4.657814 AGAGCCCTTTGGTTCATAAGAA 57.342 40.909 0.00 0.00 43.89 2.52
4656 4866 5.198602 AGAGCCCTTTGGTTCATAAGAAT 57.801 39.130 0.00 0.00 43.89 2.40
4657 4867 4.952335 AGAGCCCTTTGGTTCATAAGAATG 59.048 41.667 0.00 0.00 43.89 2.67
4658 4868 4.026052 AGCCCTTTGGTTCATAAGAATGG 58.974 43.478 0.00 0.00 35.92 3.16
4659 4869 4.023291 GCCCTTTGGTTCATAAGAATGGA 58.977 43.478 0.00 0.00 35.92 3.41
4660 4870 4.651045 GCCCTTTGGTTCATAAGAATGGAT 59.349 41.667 0.00 0.00 35.92 3.41
4661 4871 5.129320 GCCCTTTGGTTCATAAGAATGGATT 59.871 40.000 0.00 0.00 35.92 3.01
4662 4872 6.683861 GCCCTTTGGTTCATAAGAATGGATTC 60.684 42.308 0.00 0.00 35.92 2.52
4663 4873 6.183360 CCCTTTGGTTCATAAGAATGGATTCC 60.183 42.308 0.00 0.00 37.51 3.01
4664 4874 6.608808 CCTTTGGTTCATAAGAATGGATTCCT 59.391 38.462 3.95 0.00 37.51 3.36
4665 4875 7.779798 CCTTTGGTTCATAAGAATGGATTCCTA 59.220 37.037 3.95 0.00 37.51 2.94
4666 4876 9.359653 CTTTGGTTCATAAGAATGGATTCCTAT 57.640 33.333 3.95 0.00 37.51 2.57
4667 4877 9.713684 TTTGGTTCATAAGAATGGATTCCTATT 57.286 29.630 3.95 2.49 37.51 1.73
4668 4878 8.924511 TGGTTCATAAGAATGGATTCCTATTC 57.075 34.615 14.84 14.84 37.51 1.75
4669 4879 7.944554 TGGTTCATAAGAATGGATTCCTATTCC 59.055 37.037 17.23 7.23 37.51 3.01
4670 4880 8.166726 GGTTCATAAGAATGGATTCCTATTCCT 58.833 37.037 17.23 11.29 37.51 3.36
4673 4883 9.392506 TCATAAGAATGGATTCCTATTCCTACA 57.607 33.333 17.23 7.13 37.51 2.74
4677 4887 8.386012 AGAATGGATTCCTATTCCTACATAGG 57.614 38.462 17.23 0.00 45.32 2.57
4701 4911 8.341892 GGATTGGTTCCTATCCTTCATATTTC 57.658 38.462 19.71 0.00 41.78 2.17
4702 4912 7.944554 GGATTGGTTCCTATCCTTCATATTTCA 59.055 37.037 19.71 0.00 41.78 2.69
4703 4913 9.525826 GATTGGTTCCTATCCTTCATATTTCAT 57.474 33.333 2.68 0.00 0.00 2.57
4706 4916 9.392506 TGGTTCCTATCCTTCATATTTCATAGA 57.607 33.333 0.00 0.00 0.00 1.98
4737 4947 7.823745 AAAAAGAGCCTAGACTCAATGAAAA 57.176 32.000 8.89 0.00 39.26 2.29
4738 4948 7.823745 AAAAGAGCCTAGACTCAATGAAAAA 57.176 32.000 8.89 0.00 39.26 1.94
4775 4985 5.841810 TCAACCAAATGACATCTTGTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
4776 4986 5.598005 TCAACCAAATGACATCTTGTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
4777 4987 6.775142 TCAACCAAATGACATCTTGTTTCCTA 59.225 34.615 0.00 0.00 0.00 2.94
4778 4988 7.451255 TCAACCAAATGACATCTTGTTTCCTAT 59.549 33.333 0.00 0.00 0.00 2.57
4779 4989 7.781324 ACCAAATGACATCTTGTTTCCTATT 57.219 32.000 0.00 0.00 0.00 1.73
4780 4990 7.830739 ACCAAATGACATCTTGTTTCCTATTC 58.169 34.615 0.00 0.00 0.00 1.75
4781 4991 7.093771 ACCAAATGACATCTTGTTTCCTATTCC 60.094 37.037 0.00 0.00 0.00 3.01
4782 4992 7.123247 CCAAATGACATCTTGTTTCCTATTCCT 59.877 37.037 0.00 0.00 0.00 3.36
4783 4993 9.177608 CAAATGACATCTTGTTTCCTATTCCTA 57.822 33.333 0.00 0.00 0.00 2.94
4784 4994 8.738645 AATGACATCTTGTTTCCTATTCCTAC 57.261 34.615 0.00 0.00 0.00 3.18
4785 4995 7.496346 TGACATCTTGTTTCCTATTCCTACT 57.504 36.000 0.00 0.00 0.00 2.57
4786 4996 7.556844 TGACATCTTGTTTCCTATTCCTACTC 58.443 38.462 0.00 0.00 0.00 2.59
4787 4997 7.180229 TGACATCTTGTTTCCTATTCCTACTCA 59.820 37.037 0.00 0.00 0.00 3.41
4788 4998 8.095452 ACATCTTGTTTCCTATTCCTACTCAT 57.905 34.615 0.00 0.00 0.00 2.90
4789 4999 9.213777 ACATCTTGTTTCCTATTCCTACTCATA 57.786 33.333 0.00 0.00 0.00 2.15
4790 5000 9.703892 CATCTTGTTTCCTATTCCTACTCATAG 57.296 37.037 0.00 0.00 0.00 2.23
4807 5017 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
4808 5018 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
4809 5019 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
4810 5020 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
4811 5021 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
4812 5022 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
4821 5031 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
4822 5032 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
4823 5033 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
4824 5034 8.899427 ATACATGTCATCTCATTTCCTACAAG 57.101 34.615 0.00 0.00 0.00 3.16
4825 5035 6.950842 ACATGTCATCTCATTTCCTACAAGA 58.049 36.000 0.00 0.00 0.00 3.02
4826 5036 7.571919 ACATGTCATCTCATTTCCTACAAGAT 58.428 34.615 0.00 0.00 0.00 2.40
4827 5037 8.051535 ACATGTCATCTCATTTCCTACAAGATT 58.948 33.333 0.00 0.00 0.00 2.40
4828 5038 8.557864 CATGTCATCTCATTTCCTACAAGATTC 58.442 37.037 0.00 0.00 0.00 2.52
4829 5039 7.855375 TGTCATCTCATTTCCTACAAGATTCT 58.145 34.615 0.00 0.00 0.00 2.40
4830 5040 8.324306 TGTCATCTCATTTCCTACAAGATTCTT 58.676 33.333 0.00 0.00 0.00 2.52
4831 5041 9.823647 GTCATCTCATTTCCTACAAGATTCTTA 57.176 33.333 0.00 0.00 0.00 2.10
4835 5045 9.838339 TCTCATTTCCTACAAGATTCTTATTCC 57.162 33.333 0.00 0.00 0.00 3.01
4836 5046 9.844257 CTCATTTCCTACAAGATTCTTATTCCT 57.156 33.333 0.00 0.00 0.00 3.36
4840 5050 8.807948 TTCCTACAAGATTCTTATTCCTTTGG 57.192 34.615 0.00 0.00 0.00 3.28
4841 5051 7.928873 TCCTACAAGATTCTTATTCCTTTGGT 58.071 34.615 0.00 0.00 0.00 3.67
4842 5052 7.829211 TCCTACAAGATTCTTATTCCTTTGGTG 59.171 37.037 0.00 0.00 0.00 4.17
4843 5053 7.611855 CCTACAAGATTCTTATTCCTTTGGTGT 59.388 37.037 0.00 0.00 0.00 4.16
4844 5054 7.454260 ACAAGATTCTTATTCCTTTGGTGTC 57.546 36.000 0.00 0.00 0.00 3.67
4845 5055 7.004086 ACAAGATTCTTATTCCTTTGGTGTCA 58.996 34.615 0.00 0.00 0.00 3.58
4846 5056 7.505585 ACAAGATTCTTATTCCTTTGGTGTCAA 59.494 33.333 0.00 0.00 0.00 3.18
4847 5057 7.454260 AGATTCTTATTCCTTTGGTGTCAAC 57.546 36.000 0.00 0.00 31.78 3.18
4866 5076 5.841810 TCAACCAAATGACATCTTGTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
4867 5077 5.598005 TCAACCAAATGACATCTTGTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
4868 5078 6.775142 TCAACCAAATGACATCTTGTTTCCTA 59.225 34.615 0.00 0.00 0.00 2.94
4869 5079 7.451255 TCAACCAAATGACATCTTGTTTCCTAT 59.549 33.333 0.00 0.00 0.00 2.57
4870 5080 7.781324 ACCAAATGACATCTTGTTTCCTATT 57.219 32.000 0.00 0.00 0.00 1.73
4871 5081 7.830739 ACCAAATGACATCTTGTTTCCTATTC 58.169 34.615 0.00 0.00 0.00 1.75
4872 5082 7.093771 ACCAAATGACATCTTGTTTCCTATTCC 60.094 37.037 0.00 0.00 0.00 3.01
4873 5083 7.123247 CCAAATGACATCTTGTTTCCTATTCCT 59.877 37.037 0.00 0.00 0.00 3.36
4874 5084 9.177608 CAAATGACATCTTGTTTCCTATTCCTA 57.822 33.333 0.00 0.00 0.00 2.94
4875 5085 8.738645 AATGACATCTTGTTTCCTATTCCTAC 57.261 34.615 0.00 0.00 0.00 3.18
4876 5086 7.496346 TGACATCTTGTTTCCTATTCCTACT 57.504 36.000 0.00 0.00 0.00 2.57
4877 5087 7.556844 TGACATCTTGTTTCCTATTCCTACTC 58.443 38.462 0.00 0.00 0.00 2.59
4878 5088 7.180229 TGACATCTTGTTTCCTATTCCTACTCA 59.820 37.037 0.00 0.00 0.00 3.41
4879 5089 8.095452 ACATCTTGTTTCCTATTCCTACTCAT 57.905 34.615 0.00 0.00 0.00 2.90
4880 5090 9.213777 ACATCTTGTTTCCTATTCCTACTCATA 57.786 33.333 0.00 0.00 0.00 2.15
4881 5091 9.703892 CATCTTGTTTCCTATTCCTACTCATAG 57.296 37.037 0.00 0.00 0.00 2.23
4898 5108 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
4899 5109 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
4900 5110 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
4901 5111 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
4902 5112 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
4903 5113 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
4912 5122 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
4913 5123 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
4914 5124 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
4915 5125 8.899427 ATACATGTCATCTCATTTCCTACAAG 57.101 34.615 0.00 0.00 0.00 3.16
4916 5126 6.950842 ACATGTCATCTCATTTCCTACAAGA 58.049 36.000 0.00 0.00 0.00 3.02
4917 5127 7.571919 ACATGTCATCTCATTTCCTACAAGAT 58.428 34.615 0.00 0.00 0.00 2.40
4918 5128 8.051535 ACATGTCATCTCATTTCCTACAAGATT 58.948 33.333 0.00 0.00 0.00 2.40
4919 5129 8.557864 CATGTCATCTCATTTCCTACAAGATTC 58.442 37.037 0.00 0.00 0.00 2.52
4920 5130 7.050377 TGTCATCTCATTTCCTACAAGATTCC 58.950 38.462 0.00 0.00 0.00 3.01
4921 5131 7.092712 TGTCATCTCATTTCCTACAAGATTCCT 60.093 37.037 0.00 0.00 0.00 3.36
4922 5132 8.424918 GTCATCTCATTTCCTACAAGATTCCTA 58.575 37.037 0.00 0.00 0.00 2.94
4923 5133 9.163894 TCATCTCATTTCCTACAAGATTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
4924 5134 9.790344 CATCTCATTTCCTACAAGATTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
4926 5136 8.432805 TCTCATTTCCTACAAGATTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
4927 5137 8.337118 TCATTTCCTACAAGATTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
4928 5138 9.447279 TCATTTCCTACAAGATTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
4931 5141 9.447279 TTTCCTACAAGATTCCTATTCCTATGA 57.553 33.333 0.00 0.00 0.00 2.15
4932 5142 8.657387 TCCTACAAGATTCCTATTCCTATGAG 57.343 38.462 0.00 0.00 0.00 2.90
4933 5143 7.676043 TCCTACAAGATTCCTATTCCTATGAGG 59.324 40.741 0.00 0.00 36.46 3.86
4934 5144 6.694445 ACAAGATTCCTATTCCTATGAGGG 57.306 41.667 0.00 0.00 35.59 4.30
4935 5145 5.013599 ACAAGATTCCTATTCCTATGAGGGC 59.986 44.000 0.00 0.00 35.59 5.19
4936 5146 4.767908 AGATTCCTATTCCTATGAGGGCA 58.232 43.478 0.00 0.00 35.59 5.36
4937 5147 5.357440 AGATTCCTATTCCTATGAGGGCAT 58.643 41.667 0.00 0.00 35.59 4.40
4938 5148 5.428131 AGATTCCTATTCCTATGAGGGCATC 59.572 44.000 0.00 0.00 35.59 3.91
4939 5149 4.426357 TCCTATTCCTATGAGGGCATCT 57.574 45.455 0.00 0.00 35.59 2.90
4940 5150 4.357325 TCCTATTCCTATGAGGGCATCTC 58.643 47.826 0.00 0.00 42.74 2.75
4941 5151 3.454082 CCTATTCCTATGAGGGCATCTCC 59.546 52.174 0.00 0.00 41.76 3.71
4942 5152 2.494888 TTCCTATGAGGGCATCTCCA 57.505 50.000 0.00 0.00 41.76 3.86
4943 5153 2.021262 TCCTATGAGGGCATCTCCAG 57.979 55.000 0.00 0.00 41.76 3.86
4944 5154 0.324285 CCTATGAGGGCATCTCCAGC 59.676 60.000 0.00 0.00 41.76 4.85
5006 5216 3.996614 CCGAAAAATCGGCCCAGT 58.003 55.556 4.12 0.00 46.76 4.00
5007 5217 1.800681 CCGAAAAATCGGCCCAGTC 59.199 57.895 4.12 0.00 46.76 3.51
5008 5218 1.423845 CGAAAAATCGGCCCAGTCG 59.576 57.895 0.00 0.00 0.00 4.18
5009 5219 1.136774 GAAAAATCGGCCCAGTCGC 59.863 57.895 0.00 0.00 0.00 5.19
5010 5220 2.577763 GAAAAATCGGCCCAGTCGCG 62.578 60.000 0.00 0.00 0.00 5.87
5027 5237 3.424105 GCCCCCAGGAGCCTGATT 61.424 66.667 17.88 0.00 46.30 2.57
5028 5238 3.001358 GCCCCCAGGAGCCTGATTT 62.001 63.158 17.88 0.00 46.30 2.17
5029 5239 1.699752 CCCCCAGGAGCCTGATTTT 59.300 57.895 17.88 0.00 46.30 1.82
5030 5240 0.396278 CCCCCAGGAGCCTGATTTTC 60.396 60.000 17.88 0.00 46.30 2.29
5031 5241 0.749454 CCCCAGGAGCCTGATTTTCG 60.749 60.000 17.88 0.02 46.30 3.46
5032 5242 1.379642 CCCAGGAGCCTGATTTTCGC 61.380 60.000 17.88 0.00 46.30 4.70
5033 5243 0.393537 CCAGGAGCCTGATTTTCGCT 60.394 55.000 17.88 0.00 46.30 4.93
5034 5244 0.731417 CAGGAGCCTGATTTTCGCTG 59.269 55.000 11.08 0.00 46.30 5.18
5035 5245 0.393537 AGGAGCCTGATTTTCGCTGG 60.394 55.000 0.00 0.00 31.61 4.85
5036 5246 1.431036 GAGCCTGATTTTCGCTGGC 59.569 57.895 0.00 0.00 46.86 4.85
5037 5247 3.595819 GCCTGATTTTCGCTGGCT 58.404 55.556 0.00 0.00 44.20 4.75
5038 5248 1.885871 GCCTGATTTTCGCTGGCTT 59.114 52.632 0.00 0.00 44.20 4.35
5039 5249 0.457337 GCCTGATTTTCGCTGGCTTG 60.457 55.000 0.00 0.00 44.20 4.01
5040 5250 0.171903 CCTGATTTTCGCTGGCTTGG 59.828 55.000 0.00 0.00 0.00 3.61
5041 5251 0.171903 CTGATTTTCGCTGGCTTGGG 59.828 55.000 0.00 0.00 0.00 4.12
5042 5252 1.153765 GATTTTCGCTGGCTTGGGC 60.154 57.895 0.00 0.00 37.82 5.36
5052 5262 4.047834 GCTTGGGCCAAAAACAGC 57.952 55.556 21.28 15.90 0.00 4.40
5053 5263 1.955663 GCTTGGGCCAAAAACAGCG 60.956 57.895 21.28 7.74 0.00 5.18
5054 5264 1.955663 CTTGGGCCAAAAACAGCGC 60.956 57.895 21.28 0.00 41.90 5.92
5055 5265 3.453070 TTGGGCCAAAAACAGCGCC 62.453 57.895 18.51 0.00 40.93 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.045407 ACCGACTTAGCAGTGGTTGA 58.955 50.000 0.00 0.00 33.20 3.18
1 2 1.148310 CACCGACTTAGCAGTGGTTG 58.852 55.000 0.00 0.00 34.18 3.77
2 3 1.045407 TCACCGACTTAGCAGTGGTT 58.955 50.000 0.00 0.00 34.18 3.67
3 4 1.045407 TTCACCGACTTAGCAGTGGT 58.955 50.000 0.00 0.00 35.80 4.16
4 5 2.386661 ATTCACCGACTTAGCAGTGG 57.613 50.000 0.00 0.00 31.22 4.00
5 6 4.929808 ACTTAATTCACCGACTTAGCAGTG 59.070 41.667 0.00 0.00 31.22 3.66
6 7 4.929808 CACTTAATTCACCGACTTAGCAGT 59.070 41.667 0.00 0.00 35.17 4.40
7 8 4.330074 CCACTTAATTCACCGACTTAGCAG 59.670 45.833 0.00 0.00 0.00 4.24
17 18 7.702348 GTCAATGATTTAGCCACTTAATTCACC 59.298 37.037 0.00 0.00 30.30 4.02
29 30 9.384764 AGTCTAAGTTAAGTCAATGATTTAGCC 57.615 33.333 8.31 0.69 0.00 3.93
46 47 7.121315 GGGCATTTTGACAAGATAGTCTAAGTT 59.879 37.037 0.00 0.00 39.27 2.66
50 51 5.045213 TGGGGCATTTTGACAAGATAGTCTA 60.045 40.000 0.00 0.00 39.27 2.59
51 52 4.263905 TGGGGCATTTTGACAAGATAGTCT 60.264 41.667 0.00 0.00 39.27 3.24
52 53 4.016444 TGGGGCATTTTGACAAGATAGTC 58.984 43.478 0.00 0.00 38.99 2.59
53 54 3.763897 GTGGGGCATTTTGACAAGATAGT 59.236 43.478 0.00 0.00 0.00 2.12
54 55 3.181497 CGTGGGGCATTTTGACAAGATAG 60.181 47.826 0.00 0.00 0.00 2.08
55 56 2.752354 CGTGGGGCATTTTGACAAGATA 59.248 45.455 0.00 0.00 0.00 1.98
56 57 1.545582 CGTGGGGCATTTTGACAAGAT 59.454 47.619 0.00 0.00 0.00 2.40
57 58 0.958091 CGTGGGGCATTTTGACAAGA 59.042 50.000 0.00 0.00 0.00 3.02
58 59 0.673437 ACGTGGGGCATTTTGACAAG 59.327 50.000 0.00 0.00 0.00 3.16
59 60 1.115467 AACGTGGGGCATTTTGACAA 58.885 45.000 0.00 0.00 0.00 3.18
60 61 1.067821 GAAACGTGGGGCATTTTGACA 59.932 47.619 0.00 0.00 0.00 3.58
61 62 1.339929 AGAAACGTGGGGCATTTTGAC 59.660 47.619 0.00 0.00 0.00 3.18
62 63 1.698506 AGAAACGTGGGGCATTTTGA 58.301 45.000 0.00 0.00 0.00 2.69
74 75 9.401873 GGTAATTTATTAAGTGCAAAGAAACGT 57.598 29.630 0.00 0.00 0.00 3.99
75 76 8.856247 GGGTAATTTATTAAGTGCAAAGAAACG 58.144 33.333 0.00 0.00 0.00 3.60
90 91 2.888414 CGATTGGCGGGGGTAATTTATT 59.112 45.455 0.00 0.00 36.03 1.40
144 145 2.720758 CGTGTGTGTAGCAGCGCTC 61.721 63.158 7.13 2.24 40.44 5.03
146 147 2.733218 TCGTGTGTGTAGCAGCGC 60.733 61.111 0.00 0.00 0.00 5.92
147 148 1.212455 TTGTCGTGTGTGTAGCAGCG 61.212 55.000 0.00 0.00 0.00 5.18
149 150 3.878086 AATTTGTCGTGTGTGTAGCAG 57.122 42.857 0.00 0.00 0.00 4.24
157 158 5.356882 AACCACTCATAATTTGTCGTGTG 57.643 39.130 0.00 0.00 0.00 3.82
170 171 2.671396 GCATCGTACGAAAACCACTCAT 59.329 45.455 23.56 0.00 0.00 2.90
174 175 1.463528 GCTGCATCGTACGAAAACCAC 60.464 52.381 23.56 6.91 0.00 4.16
177 178 2.587612 TTGCTGCATCGTACGAAAAC 57.412 45.000 23.56 14.63 0.00 2.43
183 184 3.065233 TGGATTGATTTGCTGCATCGTAC 59.935 43.478 1.84 0.00 0.00 3.67
186 187 2.855660 TGGATTGATTTGCTGCATCG 57.144 45.000 1.84 0.00 0.00 3.84
193 194 3.450578 ACGCATGAATGGATTGATTTGC 58.549 40.909 0.00 0.00 0.00 3.68
196 197 4.214971 GCTCTACGCATGAATGGATTGATT 59.785 41.667 0.00 0.00 38.92 2.57
223 224 3.990318 TCGTGAATGATGCTATCTCGT 57.010 42.857 0.00 0.00 33.32 4.18
225 226 6.561166 CGAACTTTCGTGAATGATGCTATCTC 60.561 42.308 3.13 0.00 45.09 2.75
256 270 1.947146 CTGTGCGAACGACGGTTGA 60.947 57.895 3.74 0.00 42.83 3.18
261 275 1.121967 GAAACTACTGTGCGAACGACG 59.878 52.381 0.00 0.00 45.66 5.12
267 281 4.776795 TGATACTGAAACTACTGTGCGA 57.223 40.909 0.00 0.00 0.00 5.10
311 325 9.895138 TTACTCCCTAAACGCTCTTATATTTTT 57.105 29.630 0.00 0.00 0.00 1.94
316 330 9.895138 AAAAATTACTCCCTAAACGCTCTTATA 57.105 29.630 0.00 0.00 0.00 0.98
317 331 8.803397 AAAAATTACTCCCTAAACGCTCTTAT 57.197 30.769 0.00 0.00 0.00 1.73
318 332 9.154847 GTAAAAATTACTCCCTAAACGCTCTTA 57.845 33.333 0.00 0.00 0.00 2.10
320 334 7.163441 TGTAAAAATTACTCCCTAAACGCTCT 58.837 34.615 2.35 0.00 0.00 4.09
321 335 7.368480 TGTAAAAATTACTCCCTAAACGCTC 57.632 36.000 2.35 0.00 0.00 5.03
322 336 6.128090 GCTGTAAAAATTACTCCCTAAACGCT 60.128 38.462 2.35 0.00 0.00 5.07
324 338 7.136289 TGCTGTAAAAATTACTCCCTAAACG 57.864 36.000 2.35 0.00 0.00 3.60
325 339 8.354426 TGTTGCTGTAAAAATTACTCCCTAAAC 58.646 33.333 2.35 0.00 0.00 2.01
329 343 6.719370 TGATGTTGCTGTAAAAATTACTCCCT 59.281 34.615 2.35 0.00 0.00 4.20
330 344 6.919721 TGATGTTGCTGTAAAAATTACTCCC 58.080 36.000 2.35 0.00 0.00 4.30
331 345 7.328493 GGTTGATGTTGCTGTAAAAATTACTCC 59.672 37.037 2.35 0.00 0.00 3.85
332 346 8.082242 AGGTTGATGTTGCTGTAAAAATTACTC 58.918 33.333 2.35 0.00 0.00 2.59
334 348 8.587952 AAGGTTGATGTTGCTGTAAAAATTAC 57.412 30.769 0.00 0.00 0.00 1.89
437 497 6.094186 GTCCTTTTCCATCTGTAATTGAGGTC 59.906 42.308 0.00 0.00 0.00 3.85
448 508 6.398095 GGGTAAATTTGTCCTTTTCCATCTG 58.602 40.000 0.00 0.00 0.00 2.90
469 529 1.106944 CGTTGTTTTCAGCCAGGGGT 61.107 55.000 0.00 0.00 0.00 4.95
1321 1387 4.956700 TGAAGAATCTAGGGACACTACCAG 59.043 45.833 0.00 0.00 0.00 4.00
1323 1389 5.163395 CCTTGAAGAATCTAGGGACACTACC 60.163 48.000 0.00 0.00 42.71 3.18
1331 1397 3.068873 CGTCCTCCTTGAAGAATCTAGGG 59.931 52.174 0.00 0.00 45.38 3.53
1332 1398 3.491792 GCGTCCTCCTTGAAGAATCTAGG 60.492 52.174 0.00 0.63 46.31 3.02
1333 1399 3.491792 GGCGTCCTCCTTGAAGAATCTAG 60.492 52.174 0.00 0.00 0.00 2.43
1354 1420 0.809241 GCGGAGAAGCTCAGTGATGG 60.809 60.000 0.00 0.00 31.08 3.51
1355 1421 0.108472 TGCGGAGAAGCTCAGTGATG 60.108 55.000 0.00 0.00 38.13 3.07
1375 1441 3.006323 CAGAATTGGGGATCTCCTAGACG 59.994 52.174 14.22 0.00 35.95 4.18
1424 1549 6.525629 GCATACTCTTATACCACACCTGAAT 58.474 40.000 0.00 0.00 0.00 2.57
1448 1573 6.015504 CGTATGAAAAGGAAACATCACTTCG 58.984 40.000 0.00 0.00 0.00 3.79
1543 1670 1.236616 TGCTGAAGTGCAATCCCACG 61.237 55.000 0.00 0.00 40.29 4.94
1551 1678 3.678289 AGTGTCATATTGCTGAAGTGCA 58.322 40.909 0.00 0.00 41.65 4.57
1586 1713 3.996363 CTGCTACAATGCTTCTGTACACA 59.004 43.478 0.00 0.00 0.00 3.72
1587 1714 3.372206 CCTGCTACAATGCTTCTGTACAC 59.628 47.826 0.00 0.00 0.00 2.90
1603 1730 4.737649 GCATATGCTATATCACGCCTGCTA 60.738 45.833 20.64 0.00 38.21 3.49
1665 1792 2.095059 CAGCACCACCTACATCAAAAGC 60.095 50.000 0.00 0.00 0.00 3.51
1834 1963 5.946942 ATTTGAGAAGCAGGTCTATCAGA 57.053 39.130 0.00 0.00 0.00 3.27
1847 1976 8.503458 ACTCAGACATGGATAAATTTGAGAAG 57.497 34.615 0.00 0.00 35.84 2.85
1852 1981 6.623486 TGCAACTCAGACATGGATAAATTTG 58.377 36.000 0.00 0.00 0.00 2.32
1890 2019 9.539825 ACAAATACTTACAAAACATCAATGCAA 57.460 25.926 0.00 0.00 0.00 4.08
1891 2020 8.976471 CACAAATACTTACAAAACATCAATGCA 58.024 29.630 0.00 0.00 0.00 3.96
1892 2021 8.434661 CCACAAATACTTACAAAACATCAATGC 58.565 33.333 0.00 0.00 0.00 3.56
1893 2022 8.434661 GCCACAAATACTTACAAAACATCAATG 58.565 33.333 0.00 0.00 0.00 2.82
1894 2023 8.147058 TGCCACAAATACTTACAAAACATCAAT 58.853 29.630 0.00 0.00 0.00 2.57
1895 2024 7.492524 TGCCACAAATACTTACAAAACATCAA 58.507 30.769 0.00 0.00 0.00 2.57
1896 2025 7.013750 TCTGCCACAAATACTTACAAAACATCA 59.986 33.333 0.00 0.00 0.00 3.07
1897 2026 7.326063 GTCTGCCACAAATACTTACAAAACATC 59.674 37.037 0.00 0.00 0.00 3.06
1898 2027 7.014230 AGTCTGCCACAAATACTTACAAAACAT 59.986 33.333 0.00 0.00 0.00 2.71
1899 2028 6.320164 AGTCTGCCACAAATACTTACAAAACA 59.680 34.615 0.00 0.00 0.00 2.83
1900 2029 6.735130 AGTCTGCCACAAATACTTACAAAAC 58.265 36.000 0.00 0.00 0.00 2.43
1901 2030 6.952773 AGTCTGCCACAAATACTTACAAAA 57.047 33.333 0.00 0.00 0.00 2.44
1902 2031 6.544197 TCAAGTCTGCCACAAATACTTACAAA 59.456 34.615 0.00 0.00 0.00 2.83
1906 2035 6.711277 AGATCAAGTCTGCCACAAATACTTA 58.289 36.000 0.00 0.00 35.31 2.24
1937 2097 9.255304 GAACTGATGGAAATAGAGTAGAACATC 57.745 37.037 0.00 0.00 35.33 3.06
1975 2142 3.234353 CAGAGGGAGTACTATGCATGGA 58.766 50.000 17.90 0.00 0.00 3.41
1980 2147 6.466885 TTCTTTACAGAGGGAGTACTATGC 57.533 41.667 0.00 0.00 33.13 3.14
2022 2189 9.589461 TTACAAAAACACTCCCTCCATAAATAA 57.411 29.630 0.00 0.00 0.00 1.40
2023 2190 9.762381 ATTACAAAAACACTCCCTCCATAAATA 57.238 29.630 0.00 0.00 0.00 1.40
2024 2191 8.664669 ATTACAAAAACACTCCCTCCATAAAT 57.335 30.769 0.00 0.00 0.00 1.40
2026 2193 9.762381 AATATTACAAAAACACTCCCTCCATAA 57.238 29.630 0.00 0.00 0.00 1.90
2027 2194 9.403583 GAATATTACAAAAACACTCCCTCCATA 57.596 33.333 0.00 0.00 0.00 2.74
2030 2197 6.661805 TGGAATATTACAAAAACACTCCCTCC 59.338 38.462 0.00 0.00 0.00 4.30
2135 2305 4.034285 ACTGGGAATGTACCTGGAAAAG 57.966 45.455 0.00 0.00 0.00 2.27
2275 2445 6.158695 ACAGAAACCTGGTCTACCAATATGAT 59.841 38.462 0.00 0.00 46.97 2.45
2360 2530 5.416952 AGCTGCAATTAGAGCACACTAAATT 59.583 36.000 1.02 0.00 37.02 1.82
2532 2702 0.469917 ATACAGTTCCGGATGCCCAG 59.530 55.000 4.15 0.00 0.00 4.45
2578 2748 8.526978 TGCCAGTAGATCTCTCAACATATAATC 58.473 37.037 0.00 0.00 0.00 1.75
2703 2873 4.394300 CCTCTAGCATGAAGACCACAAAAG 59.606 45.833 0.00 0.00 0.00 2.27
2728 2898 1.337387 GTATAGGACACCAGGCTCGAC 59.663 57.143 0.00 0.00 0.00 4.20
2760 2930 3.817647 GAGGTTCATGAAACTGCTCAACT 59.182 43.478 30.28 3.59 38.71 3.16
2874 3046 4.200874 ACACCAAACGAGGACAAAATACA 58.799 39.130 0.00 0.00 0.00 2.29
3039 3212 2.229792 CACTGTTAAGCTTGCTTCCCA 58.770 47.619 9.86 8.55 0.00 4.37
3138 3312 7.555195 AGTGGCCAGTGGTTAATAGTTTAATAC 59.445 37.037 13.75 0.00 30.34 1.89
3142 3316 5.221966 ACAGTGGCCAGTGGTTAATAGTTTA 60.222 40.000 37.49 0.00 36.10 2.01
3144 3318 3.073946 ACAGTGGCCAGTGGTTAATAGTT 59.926 43.478 37.49 15.82 36.10 2.24
3146 3320 3.350219 ACAGTGGCCAGTGGTTAATAG 57.650 47.619 37.49 15.83 36.10 1.73
3179 3353 2.568062 TCGTACCCACCTTCAGCATAAA 59.432 45.455 0.00 0.00 0.00 1.40
3181 3355 1.855295 TCGTACCCACCTTCAGCATA 58.145 50.000 0.00 0.00 0.00 3.14
3207 3381 6.313744 AGGTATTCAACGTTTTCTTTGAGG 57.686 37.500 0.00 0.00 38.83 3.86
3324 3498 1.392589 ACACACAAAGGCAGTTGGAG 58.607 50.000 5.99 1.41 32.50 3.86
3363 3537 1.398739 CGCAAATGGTGGTACGCATTA 59.601 47.619 0.00 0.00 43.02 1.90
3369 3543 0.878416 TCTTGCGCAAATGGTGGTAC 59.122 50.000 25.01 0.00 0.00 3.34
3382 3556 5.106712 TGCTTAGATTGGTAAAAGTCTTGCG 60.107 40.000 0.00 0.00 0.00 4.85
3384 3558 7.672983 TCTGCTTAGATTGGTAAAAGTCTTG 57.327 36.000 0.00 0.00 0.00 3.02
3444 3618 1.522668 CAAAATGCTCGTCCTGGACA 58.477 50.000 25.42 12.23 32.09 4.02
3519 3693 0.884704 CTGTTTCCACTGGACCACCG 60.885 60.000 0.00 0.00 39.42 4.94
3540 3714 2.651361 CCTGTCGCCTCGTTCACT 59.349 61.111 0.00 0.00 0.00 3.41
3558 3732 0.744771 GGGAGGGATCGCACAGAAAC 60.745 60.000 12.83 0.00 0.00 2.78
3588 3762 3.655276 AACTTCAGCATGGCTTTTGAG 57.345 42.857 0.00 0.00 36.40 3.02
3591 3765 3.132646 TCACAAACTTCAGCATGGCTTTT 59.867 39.130 0.00 0.00 36.40 2.27
3670 3844 2.341760 CGAACGTCTTGGTCGAGAATTC 59.658 50.000 0.32 0.00 0.00 2.17
3776 3950 5.070001 TGTTAATGTGCTACTCAAAAGGCT 58.930 37.500 0.00 0.00 0.00 4.58
3818 3993 4.052159 AGTCAGAACTCACAAGTCACAG 57.948 45.455 0.00 0.00 33.48 3.66
3856 4031 2.162408 GACCATGCTAACTTGCTTCCAC 59.838 50.000 0.00 0.00 0.00 4.02
3914 4089 4.748892 TCGACAGAGAAATCAGTTCATCC 58.251 43.478 0.00 0.00 38.86 3.51
3966 4141 5.585047 GTCAAACCCTTATTTATGAGCTCGT 59.415 40.000 14.07 14.07 0.00 4.18
3968 4143 5.007724 CGGTCAAACCCTTATTTATGAGCTC 59.992 44.000 6.82 6.82 33.75 4.09
4043 4218 6.846350 AGATTCCATTCAAACATCGTTCTTC 58.154 36.000 0.00 0.00 0.00 2.87
4085 4261 3.316029 TGCCATCAGGAAATAATTCGCAG 59.684 43.478 0.00 0.00 36.36 5.18
4089 4265 4.218312 AGGGTGCCATCAGGAAATAATTC 58.782 43.478 0.00 0.00 36.89 2.17
4106 4282 4.839668 TCACCGAATTAACAAAAGGGTG 57.160 40.909 1.00 1.00 43.61 4.61
4107 4283 4.261280 CGTTCACCGAATTAACAAAAGGGT 60.261 41.667 0.00 0.00 39.56 4.34
4129 4306 0.659427 AGTTGGATGATGCGCAATCG 59.341 50.000 17.11 0.00 38.22 3.34
4137 4314 5.297776 GGAGAAACATGGTAGTTGGATGATG 59.702 44.000 0.00 0.00 0.00 3.07
4138 4315 5.044919 TGGAGAAACATGGTAGTTGGATGAT 60.045 40.000 0.00 0.00 0.00 2.45
4152 4329 0.687354 AGCAGACCGTGGAGAAACAT 59.313 50.000 0.00 0.00 0.00 2.71
4154 4331 1.569479 GCAGCAGACCGTGGAGAAAC 61.569 60.000 0.00 0.00 0.00 2.78
4171 4349 2.894126 ACATTTCCCAAAACGTATGGCA 59.106 40.909 13.47 0.00 36.58 4.92
4204 4405 3.565905 AGTAACAGATTGCTTGCTTGC 57.434 42.857 0.00 0.00 0.00 4.01
4205 4406 6.093219 ACATCTAGTAACAGATTGCTTGCTTG 59.907 38.462 0.00 0.00 32.83 4.01
4208 4410 5.582269 TGACATCTAGTAACAGATTGCTTGC 59.418 40.000 0.00 0.00 32.83 4.01
4218 4420 6.995686 ACACACCATTTTGACATCTAGTAACA 59.004 34.615 0.00 0.00 0.00 2.41
4220 4422 6.072728 GCACACACCATTTTGACATCTAGTAA 60.073 38.462 0.00 0.00 0.00 2.24
4224 4426 4.140536 TGCACACACCATTTTGACATCTA 58.859 39.130 0.00 0.00 0.00 1.98
4225 4427 2.957680 TGCACACACCATTTTGACATCT 59.042 40.909 0.00 0.00 0.00 2.90
4226 4428 3.367992 TGCACACACCATTTTGACATC 57.632 42.857 0.00 0.00 0.00 3.06
4244 4446 2.050985 GGCACTGCGTCAGTTTGC 60.051 61.111 9.36 10.51 42.59 3.68
4253 4455 1.007038 ACAGCATTTTGGCACTGCG 60.007 52.632 9.43 7.71 40.78 5.18
4254 4456 1.562575 GCACAGCATTTTGGCACTGC 61.563 55.000 7.58 7.58 35.83 4.40
4273 4475 5.504665 CCATATTTTAACTCTTGGCTCAGCG 60.505 44.000 0.00 0.00 0.00 5.18
4279 4481 3.243401 CCCGCCATATTTTAACTCTTGGC 60.243 47.826 1.70 1.70 44.78 4.52
4284 4486 4.196971 AGACACCCGCCATATTTTAACTC 58.803 43.478 0.00 0.00 0.00 3.01
4292 4495 0.389391 CGAGAAGACACCCGCCATAT 59.611 55.000 0.00 0.00 0.00 1.78
4297 4500 2.182030 CCTCGAGAAGACACCCGC 59.818 66.667 15.71 0.00 0.00 6.13
4337 4540 6.530120 TGCAGATAGACTGGTTTTACTTTGA 58.470 36.000 0.00 0.00 45.82 2.69
4350 4553 3.579709 CGTTGACAACTGCAGATAGACT 58.420 45.455 23.35 0.00 0.00 3.24
4351 4554 2.092838 GCGTTGACAACTGCAGATAGAC 59.907 50.000 23.35 10.17 33.35 2.59
4354 4558 1.067693 CGCGTTGACAACTGCAGATA 58.932 50.000 23.35 0.00 33.35 1.98
4362 4566 0.042448 GACAGAACCGCGTTGACAAC 60.042 55.000 4.92 8.34 0.00 3.32
4363 4567 0.460459 TGACAGAACCGCGTTGACAA 60.460 50.000 4.92 0.00 0.00 3.18
4425 4633 1.783071 TTCCCCACAGTTTTTGACCC 58.217 50.000 0.00 0.00 0.00 4.46
4439 4647 2.071540 CGTAGACTTCCGTTTTTCCCC 58.928 52.381 0.00 0.00 0.00 4.81
4442 4650 2.410939 AGCCGTAGACTTCCGTTTTTC 58.589 47.619 0.00 0.00 0.00 2.29
4449 4657 0.100861 CTTCCGAGCCGTAGACTTCC 59.899 60.000 0.00 0.00 0.00 3.46
4450 4658 0.810016 ACTTCCGAGCCGTAGACTTC 59.190 55.000 0.00 0.00 0.00 3.01
4471 4681 9.958180 CACATGGATATTACCAGGATTTACATA 57.042 33.333 6.40 0.00 43.28 2.29
4472 4682 8.448008 ACACATGGATATTACCAGGATTTACAT 58.552 33.333 6.40 0.00 43.28 2.29
4473 4683 7.811282 ACACATGGATATTACCAGGATTTACA 58.189 34.615 6.40 0.00 43.28 2.41
4474 4684 9.959721 ATACACATGGATATTACCAGGATTTAC 57.040 33.333 6.40 0.00 43.28 2.01
4476 4686 8.668653 TGATACACATGGATATTACCAGGATTT 58.331 33.333 6.40 0.00 43.28 2.17
4477 4687 8.218423 TGATACACATGGATATTACCAGGATT 57.782 34.615 6.40 0.00 43.28 3.01
4478 4688 7.813087 TGATACACATGGATATTACCAGGAT 57.187 36.000 6.40 0.00 43.28 3.24
4479 4689 7.813087 ATGATACACATGGATATTACCAGGA 57.187 36.000 6.40 0.00 43.28 3.86
4493 4703 8.316946 CAGGTGAGTAATATCCATGATACACAT 58.683 37.037 0.00 0.00 40.17 3.21
4494 4704 7.290014 ACAGGTGAGTAATATCCATGATACACA 59.710 37.037 0.00 0.00 0.00 3.72
4495 4705 7.600375 CACAGGTGAGTAATATCCATGATACAC 59.400 40.741 0.00 0.00 0.00 2.90
4496 4706 7.508977 TCACAGGTGAGTAATATCCATGATACA 59.491 37.037 0.00 0.00 34.14 2.29
4497 4707 7.896811 TCACAGGTGAGTAATATCCATGATAC 58.103 38.462 0.00 0.00 34.14 2.24
4513 4723 2.300967 GGGATGGCCTCACAGGTGA 61.301 63.158 3.32 1.70 37.80 4.02
4514 4724 2.273449 GGGATGGCCTCACAGGTG 59.727 66.667 3.32 0.00 37.80 4.00
4515 4725 3.017581 GGGGATGGCCTCACAGGT 61.018 66.667 3.32 0.00 37.80 4.00
4516 4726 1.941403 ATTGGGGATGGCCTCACAGG 61.941 60.000 3.32 0.00 46.84 4.00
4517 4727 0.754217 CATTGGGGATGGCCTCACAG 60.754 60.000 3.32 0.00 46.84 3.66
4518 4728 1.307309 CATTGGGGATGGCCTCACA 59.693 57.895 3.32 0.00 46.84 3.58
4519 4729 0.753111 GACATTGGGGATGGCCTCAC 60.753 60.000 3.32 0.00 46.84 3.51
4520 4730 0.920763 AGACATTGGGGATGGCCTCA 60.921 55.000 3.32 0.00 45.58 3.86
4521 4731 0.466922 CAGACATTGGGGATGGCCTC 60.467 60.000 3.32 0.00 45.58 4.70
4522 4732 0.920763 TCAGACATTGGGGATGGCCT 60.921 55.000 3.32 0.00 45.58 5.19
4523 4733 0.466922 CTCAGACATTGGGGATGGCC 60.467 60.000 0.00 0.00 45.58 5.36
4524 4734 0.257039 ACTCAGACATTGGGGATGGC 59.743 55.000 0.00 0.00 44.72 4.40
4525 4735 1.842562 AGACTCAGACATTGGGGATGG 59.157 52.381 0.00 0.00 40.21 3.51
4526 4736 2.502947 TCAGACTCAGACATTGGGGATG 59.497 50.000 0.00 0.00 41.71 3.51
4527 4737 2.503356 GTCAGACTCAGACATTGGGGAT 59.497 50.000 0.00 0.00 36.06 3.85
4528 4738 1.902508 GTCAGACTCAGACATTGGGGA 59.097 52.381 0.00 0.00 36.06 4.81
4529 4739 1.404717 CGTCAGACTCAGACATTGGGG 60.405 57.143 0.00 0.00 35.77 4.96
4530 4740 1.404717 CCGTCAGACTCAGACATTGGG 60.405 57.143 0.00 0.00 35.77 4.12
4531 4741 1.273606 ACCGTCAGACTCAGACATTGG 59.726 52.381 0.00 0.00 35.77 3.16
4532 4742 2.732412 ACCGTCAGACTCAGACATTG 57.268 50.000 0.00 0.00 35.77 2.82
4533 4743 6.525578 TTAATACCGTCAGACTCAGACATT 57.474 37.500 0.00 0.00 35.77 2.71
4534 4744 6.716934 ATTAATACCGTCAGACTCAGACAT 57.283 37.500 0.00 0.00 35.77 3.06
4535 4745 7.818997 ATATTAATACCGTCAGACTCAGACA 57.181 36.000 0.00 0.00 35.77 3.41
4536 4746 9.001542 ACTATATTAATACCGTCAGACTCAGAC 57.998 37.037 0.00 0.00 0.00 3.51
4539 4749 9.783081 TGTACTATATTAATACCGTCAGACTCA 57.217 33.333 0.00 0.00 0.00 3.41
4541 4751 9.790344 ACTGTACTATATTAATACCGTCAGACT 57.210 33.333 18.83 0.00 0.00 3.24
4546 4756 9.780413 GCCTTACTGTACTATATTAATACCGTC 57.220 37.037 0.00 0.00 0.00 4.79
4547 4757 8.743714 GGCCTTACTGTACTATATTAATACCGT 58.256 37.037 0.00 0.98 0.00 4.83
4548 4758 8.964772 AGGCCTTACTGTACTATATTAATACCG 58.035 37.037 0.00 0.00 0.00 4.02
4552 4762 9.617053 AAGGAGGCCTTACTGTACTATATTAAT 57.383 33.333 6.77 0.00 42.74 1.40
4553 4763 9.443365 AAAGGAGGCCTTACTGTACTATATTAA 57.557 33.333 6.77 0.00 43.92 1.40
4554 4764 8.867097 CAAAGGAGGCCTTACTGTACTATATTA 58.133 37.037 6.77 0.00 43.92 0.98
4555 4765 7.202102 CCAAAGGAGGCCTTACTGTACTATATT 60.202 40.741 6.77 0.00 43.92 1.28
4556 4766 6.270231 CCAAAGGAGGCCTTACTGTACTATAT 59.730 42.308 6.77 0.00 43.92 0.86
4557 4767 5.601313 CCAAAGGAGGCCTTACTGTACTATA 59.399 44.000 6.77 0.00 43.92 1.31
4558 4768 4.409247 CCAAAGGAGGCCTTACTGTACTAT 59.591 45.833 6.77 0.00 43.92 2.12
4559 4769 3.773119 CCAAAGGAGGCCTTACTGTACTA 59.227 47.826 6.77 0.00 43.92 1.82
4560 4770 2.572104 CCAAAGGAGGCCTTACTGTACT 59.428 50.000 6.77 0.00 43.92 2.73
4561 4771 2.987232 CCAAAGGAGGCCTTACTGTAC 58.013 52.381 6.77 0.00 43.92 2.90
4572 4782 1.004745 TCTAAGCCAAGCCAAAGGAGG 59.995 52.381 0.00 0.00 0.00 4.30
4573 4783 2.363683 CTCTAAGCCAAGCCAAAGGAG 58.636 52.381 0.00 0.00 0.00 3.69
4574 4784 1.004745 CCTCTAAGCCAAGCCAAAGGA 59.995 52.381 0.00 0.00 0.00 3.36
4575 4785 1.004745 TCCTCTAAGCCAAGCCAAAGG 59.995 52.381 0.00 0.00 0.00 3.11
4576 4786 2.496899 TCCTCTAAGCCAAGCCAAAG 57.503 50.000 0.00 0.00 0.00 2.77
4577 4787 2.969821 TTCCTCTAAGCCAAGCCAAA 57.030 45.000 0.00 0.00 0.00 3.28
4578 4788 3.456380 AATTCCTCTAAGCCAAGCCAA 57.544 42.857 0.00 0.00 0.00 4.52
4579 4789 3.245229 TGAAATTCCTCTAAGCCAAGCCA 60.245 43.478 0.00 0.00 0.00 4.75
4580 4790 3.356290 TGAAATTCCTCTAAGCCAAGCC 58.644 45.455 0.00 0.00 0.00 4.35
4581 4791 6.543831 TCTTATGAAATTCCTCTAAGCCAAGC 59.456 38.462 0.00 0.00 0.00 4.01
4582 4792 8.511604 TTCTTATGAAATTCCTCTAAGCCAAG 57.488 34.615 0.00 0.00 0.00 3.61
4583 4793 9.479549 AATTCTTATGAAATTCCTCTAAGCCAA 57.520 29.630 0.00 0.00 35.63 4.52
4584 4794 9.479549 AAATTCTTATGAAATTCCTCTAAGCCA 57.520 29.630 0.00 0.00 35.63 4.75
4624 4834 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
4625 4835 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
4626 4836 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
4627 4837 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
4628 4838 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
4629 4839 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
4630 4840 6.180472 TCTTATGAACCAAAGGGCTCTAAAG 58.820 40.000 0.00 0.00 37.90 1.85
4631 4841 6.134535 TCTTATGAACCAAAGGGCTCTAAA 57.865 37.500 0.00 0.00 37.90 1.85
4632 4842 5.772393 TCTTATGAACCAAAGGGCTCTAA 57.228 39.130 0.00 0.00 37.90 2.10
4633 4843 5.772393 TTCTTATGAACCAAAGGGCTCTA 57.228 39.130 0.00 0.00 37.90 2.43
4634 4844 4.657814 TTCTTATGAACCAAAGGGCTCT 57.342 40.909 0.00 0.00 37.90 4.09
4635 4845 4.098501 CCATTCTTATGAACCAAAGGGCTC 59.901 45.833 0.00 0.00 34.71 4.70
4636 4846 4.026052 CCATTCTTATGAACCAAAGGGCT 58.974 43.478 0.00 0.00 34.71 5.19
4637 4847 4.023291 TCCATTCTTATGAACCAAAGGGC 58.977 43.478 0.00 0.00 34.71 5.19
4638 4848 6.183360 GGAATCCATTCTTATGAACCAAAGGG 60.183 42.308 0.00 0.00 37.00 3.95
4639 4849 6.608808 AGGAATCCATTCTTATGAACCAAAGG 59.391 38.462 0.61 0.00 37.00 3.11
4640 4850 7.651027 AGGAATCCATTCTTATGAACCAAAG 57.349 36.000 0.61 0.00 37.00 2.77
4641 4851 9.713684 AATAGGAATCCATTCTTATGAACCAAA 57.286 29.630 0.61 0.00 38.55 3.28
4642 4852 9.354673 GAATAGGAATCCATTCTTATGAACCAA 57.645 33.333 0.61 0.00 38.55 3.67
4643 4853 7.944554 GGAATAGGAATCCATTCTTATGAACCA 59.055 37.037 17.55 0.00 38.55 3.67
4644 4854 8.166726 AGGAATAGGAATCCATTCTTATGAACC 58.833 37.037 17.55 8.54 38.55 3.62
4647 4857 9.392506 TGTAGGAATAGGAATCCATTCTTATGA 57.607 33.333 17.55 8.17 38.55 2.15
4677 4887 8.924511 TGAAATATGAAGGATAGGAACCAATC 57.075 34.615 0.00 0.00 0.00 2.67
4680 4890 9.392506 TCTATGAAATATGAAGGATAGGAACCA 57.607 33.333 0.00 0.00 0.00 3.67
4713 4923 7.823745 TTTTCATTGAGTCTAGGCTCTTTTT 57.176 32.000 24.20 4.72 36.51 1.94
4714 4924 7.823745 TTTTTCATTGAGTCTAGGCTCTTTT 57.176 32.000 24.20 7.12 36.51 2.27
4751 4961 5.691754 GGAAACAAGATGTCATTTGGTTGAC 59.308 40.000 12.70 0.00 45.05 3.18
4752 4962 5.598005 AGGAAACAAGATGTCATTTGGTTGA 59.402 36.000 12.70 0.00 34.55 3.18
4753 4963 5.846203 AGGAAACAAGATGTCATTTGGTTG 58.154 37.500 12.70 6.32 34.55 3.77
4754 4964 7.781324 ATAGGAAACAAGATGTCATTTGGTT 57.219 32.000 9.41 9.41 36.95 3.67
4755 4965 7.093771 GGAATAGGAAACAAGATGTCATTTGGT 60.094 37.037 10.50 3.75 0.00 3.67
4756 4966 7.123247 AGGAATAGGAAACAAGATGTCATTTGG 59.877 37.037 10.50 0.00 0.00 3.28
4757 4967 8.059798 AGGAATAGGAAACAAGATGTCATTTG 57.940 34.615 0.00 0.00 0.00 2.32
4758 4968 9.178758 GTAGGAATAGGAAACAAGATGTCATTT 57.821 33.333 0.00 0.00 0.00 2.32
4759 4969 8.552296 AGTAGGAATAGGAAACAAGATGTCATT 58.448 33.333 0.00 0.00 0.00 2.57
4760 4970 8.095452 AGTAGGAATAGGAAACAAGATGTCAT 57.905 34.615 0.00 0.00 0.00 3.06
4761 4971 7.180229 TGAGTAGGAATAGGAAACAAGATGTCA 59.820 37.037 0.00 0.00 0.00 3.58
4762 4972 7.556844 TGAGTAGGAATAGGAAACAAGATGTC 58.443 38.462 0.00 0.00 0.00 3.06
4763 4973 7.496346 TGAGTAGGAATAGGAAACAAGATGT 57.504 36.000 0.00 0.00 0.00 3.06
4764 4974 9.703892 CTATGAGTAGGAATAGGAAACAAGATG 57.296 37.037 0.00 0.00 0.00 2.90
4781 4991 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
4782 4992 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
4783 4993 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
4784 4994 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
4785 4995 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
4786 4996 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
4796 5006 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
4797 5007 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
4798 5008 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
4799 5009 8.708378 TCTTGTAGGAAATGAGATGACATGTAT 58.292 33.333 0.00 0.00 0.00 2.29
4800 5010 8.078060 TCTTGTAGGAAATGAGATGACATGTA 57.922 34.615 0.00 0.00 0.00 2.29
4801 5011 6.950842 TCTTGTAGGAAATGAGATGACATGT 58.049 36.000 0.00 0.00 0.00 3.21
4802 5012 8.447924 AATCTTGTAGGAAATGAGATGACATG 57.552 34.615 0.00 0.00 0.00 3.21
4803 5013 8.492782 AGAATCTTGTAGGAAATGAGATGACAT 58.507 33.333 0.00 0.00 0.00 3.06
4804 5014 7.855375 AGAATCTTGTAGGAAATGAGATGACA 58.145 34.615 0.00 0.00 0.00 3.58
4805 5015 8.729805 AAGAATCTTGTAGGAAATGAGATGAC 57.270 34.615 0.00 0.00 0.00 3.06
4809 5019 9.838339 GGAATAAGAATCTTGTAGGAAATGAGA 57.162 33.333 5.64 0.00 0.00 3.27
4810 5020 9.844257 AGGAATAAGAATCTTGTAGGAAATGAG 57.156 33.333 5.64 0.00 0.00 2.90
4814 5024 9.243105 CCAAAGGAATAAGAATCTTGTAGGAAA 57.757 33.333 5.64 0.00 0.00 3.13
4815 5025 8.390921 ACCAAAGGAATAAGAATCTTGTAGGAA 58.609 33.333 5.64 0.00 0.00 3.36
4816 5026 7.829211 CACCAAAGGAATAAGAATCTTGTAGGA 59.171 37.037 5.64 0.00 0.00 2.94
4817 5027 7.611855 ACACCAAAGGAATAAGAATCTTGTAGG 59.388 37.037 5.64 0.00 0.00 3.18
4818 5028 8.567285 ACACCAAAGGAATAAGAATCTTGTAG 57.433 34.615 5.64 0.00 0.00 2.74
4819 5029 8.160765 TGACACCAAAGGAATAAGAATCTTGTA 58.839 33.333 5.64 0.00 0.00 2.41
4820 5030 7.004086 TGACACCAAAGGAATAAGAATCTTGT 58.996 34.615 5.64 0.00 0.00 3.16
4821 5031 7.452880 TGACACCAAAGGAATAAGAATCTTG 57.547 36.000 5.64 0.00 0.00 3.02
4822 5032 7.039714 GGTTGACACCAAAGGAATAAGAATCTT 60.040 37.037 0.00 0.00 43.61 2.40
4823 5033 6.434340 GGTTGACACCAAAGGAATAAGAATCT 59.566 38.462 0.00 0.00 43.61 2.40
4824 5034 6.621613 GGTTGACACCAAAGGAATAAGAATC 58.378 40.000 0.00 0.00 43.61 2.52
4825 5035 6.590234 GGTTGACACCAAAGGAATAAGAAT 57.410 37.500 0.00 0.00 43.61 2.40
4842 5052 5.691754 GGAAACAAGATGTCATTTGGTTGAC 59.308 40.000 12.70 0.00 45.05 3.18
4843 5053 5.598005 AGGAAACAAGATGTCATTTGGTTGA 59.402 36.000 12.70 0.00 34.55 3.18
4844 5054 5.846203 AGGAAACAAGATGTCATTTGGTTG 58.154 37.500 12.70 6.32 34.55 3.77
4845 5055 7.781324 ATAGGAAACAAGATGTCATTTGGTT 57.219 32.000 9.41 9.41 36.95 3.67
4846 5056 7.093771 GGAATAGGAAACAAGATGTCATTTGGT 60.094 37.037 10.50 3.75 0.00 3.67
4847 5057 7.123247 AGGAATAGGAAACAAGATGTCATTTGG 59.877 37.037 10.50 0.00 0.00 3.28
4848 5058 8.059798 AGGAATAGGAAACAAGATGTCATTTG 57.940 34.615 0.00 0.00 0.00 2.32
4849 5059 9.178758 GTAGGAATAGGAAACAAGATGTCATTT 57.821 33.333 0.00 0.00 0.00 2.32
4850 5060 8.552296 AGTAGGAATAGGAAACAAGATGTCATT 58.448 33.333 0.00 0.00 0.00 2.57
4851 5061 8.095452 AGTAGGAATAGGAAACAAGATGTCAT 57.905 34.615 0.00 0.00 0.00 3.06
4852 5062 7.180229 TGAGTAGGAATAGGAAACAAGATGTCA 59.820 37.037 0.00 0.00 0.00 3.58
4853 5063 7.556844 TGAGTAGGAATAGGAAACAAGATGTC 58.443 38.462 0.00 0.00 0.00 3.06
4854 5064 7.496346 TGAGTAGGAATAGGAAACAAGATGT 57.504 36.000 0.00 0.00 0.00 3.06
4855 5065 9.703892 CTATGAGTAGGAATAGGAAACAAGATG 57.296 37.037 0.00 0.00 0.00 2.90
4872 5082 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
4873 5083 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
4874 5084 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
4875 5085 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
4876 5086 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
4877 5087 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
4887 5097 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
4888 5098 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
4889 5099 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
4890 5100 8.708378 TCTTGTAGGAAATGAGATGACATGTAT 58.292 33.333 0.00 0.00 0.00 2.29
4891 5101 8.078060 TCTTGTAGGAAATGAGATGACATGTA 57.922 34.615 0.00 0.00 0.00 2.29
4892 5102 6.950842 TCTTGTAGGAAATGAGATGACATGT 58.049 36.000 0.00 0.00 0.00 3.21
4893 5103 8.447924 AATCTTGTAGGAAATGAGATGACATG 57.552 34.615 0.00 0.00 0.00 3.21
4894 5104 7.718753 GGAATCTTGTAGGAAATGAGATGACAT 59.281 37.037 0.00 0.00 0.00 3.06
4895 5105 7.050377 GGAATCTTGTAGGAAATGAGATGACA 58.950 38.462 0.00 0.00 0.00 3.58
4896 5106 7.278875 AGGAATCTTGTAGGAAATGAGATGAC 58.721 38.462 0.00 0.00 0.00 3.06
4897 5107 7.443302 AGGAATCTTGTAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
4898 5108 9.790344 AATAGGAATCTTGTAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
4900 5110 8.432805 GGAATAGGAATCTTGTAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
4901 5111 8.435982 AGGAATAGGAATCTTGTAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
4902 5112 8.337118 AGGAATAGGAATCTTGTAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
4905 5115 9.447279 TCATAGGAATAGGAATCTTGTAGGAAA 57.553 33.333 0.00 0.00 0.00 3.13
4906 5116 9.094578 CTCATAGGAATAGGAATCTTGTAGGAA 57.905 37.037 0.00 0.00 0.00 3.36
4907 5117 7.676043 CCTCATAGGAATAGGAATCTTGTAGGA 59.324 40.741 0.00 0.00 37.67 2.94
4908 5118 7.093112 CCCTCATAGGAATAGGAATCTTGTAGG 60.093 44.444 0.00 0.00 37.67 3.18
4909 5119 7.580495 GCCCTCATAGGAATAGGAATCTTGTAG 60.580 44.444 0.00 0.00 37.67 2.74
4910 5120 6.213600 GCCCTCATAGGAATAGGAATCTTGTA 59.786 42.308 0.00 0.00 37.67 2.41
4911 5121 5.013599 GCCCTCATAGGAATAGGAATCTTGT 59.986 44.000 0.00 0.00 37.67 3.16
4912 5122 5.013495 TGCCCTCATAGGAATAGGAATCTTG 59.987 44.000 0.00 0.00 37.67 3.02
4913 5123 5.165652 TGCCCTCATAGGAATAGGAATCTT 58.834 41.667 0.00 0.00 37.67 2.40
4914 5124 4.767908 TGCCCTCATAGGAATAGGAATCT 58.232 43.478 0.00 0.00 37.67 2.40
4915 5125 5.428131 AGATGCCCTCATAGGAATAGGAATC 59.572 44.000 0.00 2.00 37.67 2.52
4916 5126 5.357440 AGATGCCCTCATAGGAATAGGAAT 58.643 41.667 0.00 0.00 37.67 3.01
4917 5127 4.767908 AGATGCCCTCATAGGAATAGGAA 58.232 43.478 0.00 0.00 37.67 3.36
4918 5128 4.357325 GAGATGCCCTCATAGGAATAGGA 58.643 47.826 0.00 0.00 41.58 2.94
4919 5129 3.454082 GGAGATGCCCTCATAGGAATAGG 59.546 52.174 5.71 0.00 43.76 2.57
4920 5130 4.099633 TGGAGATGCCCTCATAGGAATAG 58.900 47.826 5.71 0.00 43.76 1.73
4921 5131 4.099633 CTGGAGATGCCCTCATAGGAATA 58.900 47.826 5.71 0.00 43.76 1.75
4922 5132 2.911636 CTGGAGATGCCCTCATAGGAAT 59.088 50.000 5.71 0.00 43.76 3.01
4923 5133 2.333069 CTGGAGATGCCCTCATAGGAA 58.667 52.381 5.71 0.00 43.76 3.36
4924 5134 2.021262 CTGGAGATGCCCTCATAGGA 57.979 55.000 5.71 0.00 43.76 2.94
4925 5135 0.324285 GCTGGAGATGCCCTCATAGG 59.676 60.000 5.71 0.00 43.76 2.57
4926 5136 0.324285 GGCTGGAGATGCCCTCATAG 59.676 60.000 5.71 4.64 44.32 2.23
4927 5137 2.456627 GGCTGGAGATGCCCTCATA 58.543 57.895 5.71 0.00 44.32 2.15
4928 5138 3.248764 GGCTGGAGATGCCCTCAT 58.751 61.111 5.71 0.00 44.32 2.90
4950 5160 3.732849 GTGGAGGCCTTCCTGGGG 61.733 72.222 9.13 0.00 46.92 4.96
4951 5161 2.935481 TGTGGAGGCCTTCCTGGG 60.935 66.667 9.13 0.00 46.92 4.45
4952 5162 2.673523 CTGTGGAGGCCTTCCTGG 59.326 66.667 9.13 0.00 46.92 4.45
4953 5163 2.673523 CCTGTGGAGGCCTTCCTG 59.326 66.667 9.13 4.07 46.92 3.86
4983 5193 4.530325 CCGATTTTTCGGCGCCGG 62.530 66.667 44.95 27.98 46.76 6.13
4990 5200 1.423845 CGACTGGGCCGATTTTTCG 59.576 57.895 0.00 0.00 0.00 3.46
4991 5201 1.136774 GCGACTGGGCCGATTTTTC 59.863 57.895 0.00 0.00 0.00 2.29
4992 5202 2.686816 CGCGACTGGGCCGATTTTT 61.687 57.895 0.00 0.00 0.00 1.94
4993 5203 3.124921 CGCGACTGGGCCGATTTT 61.125 61.111 0.00 0.00 0.00 1.82
5010 5220 2.520657 AAAATCAGGCTCCTGGGGGC 62.521 60.000 13.11 13.11 43.75 5.80
5011 5221 0.396278 GAAAATCAGGCTCCTGGGGG 60.396 60.000 15.32 0.00 43.75 5.40
5012 5222 0.749454 CGAAAATCAGGCTCCTGGGG 60.749 60.000 15.32 0.00 43.75 4.96
5013 5223 1.379642 GCGAAAATCAGGCTCCTGGG 61.380 60.000 15.32 1.20 43.75 4.45
5014 5224 0.393537 AGCGAAAATCAGGCTCCTGG 60.394 55.000 15.32 0.31 43.75 4.45
5015 5225 0.731417 CAGCGAAAATCAGGCTCCTG 59.269 55.000 9.61 9.61 44.86 3.86
5016 5226 0.393537 CCAGCGAAAATCAGGCTCCT 60.394 55.000 0.00 0.00 34.13 3.69
5017 5227 1.997928 GCCAGCGAAAATCAGGCTCC 61.998 60.000 0.00 0.00 42.01 4.70
5018 5228 1.431036 GCCAGCGAAAATCAGGCTC 59.569 57.895 0.00 0.00 42.01 4.70
5019 5229 3.595819 GCCAGCGAAAATCAGGCT 58.404 55.556 0.00 0.00 42.01 4.58
5020 5230 0.457337 CAAGCCAGCGAAAATCAGGC 60.457 55.000 0.00 0.00 45.54 4.85
5021 5231 0.171903 CCAAGCCAGCGAAAATCAGG 59.828 55.000 0.00 0.00 0.00 3.86
5022 5232 0.171903 CCCAAGCCAGCGAAAATCAG 59.828 55.000 0.00 0.00 0.00 2.90
5023 5233 1.876497 GCCCAAGCCAGCGAAAATCA 61.876 55.000 0.00 0.00 0.00 2.57
5024 5234 1.153765 GCCCAAGCCAGCGAAAATC 60.154 57.895 0.00 0.00 0.00 2.17
5025 5235 2.973082 GCCCAAGCCAGCGAAAAT 59.027 55.556 0.00 0.00 0.00 1.82
5035 5245 1.955663 CGCTGTTTTTGGCCCAAGC 60.956 57.895 0.00 0.00 38.76 4.01
5036 5246 1.955663 GCGCTGTTTTTGGCCCAAG 60.956 57.895 0.00 0.00 0.00 3.61
5037 5247 2.107953 GCGCTGTTTTTGGCCCAA 59.892 55.556 0.00 0.00 0.00 4.12
5038 5248 3.922640 GGCGCTGTTTTTGGCCCA 61.923 61.111 7.64 0.00 39.67 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.