Multiple sequence alignment - TraesCS2A01G448100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G448100 chr2A 100.000 2375 0 0 1 2375 697071407 697073781 0.000000e+00 4386.0
1 TraesCS2A01G448100 chr2D 83.905 1311 91 64 406 1664 557163918 557165160 0.000000e+00 1142.0
2 TraesCS2A01G448100 chr2D 88.588 885 59 15 706 1549 557140217 557141100 0.000000e+00 1037.0
3 TraesCS2A01G448100 chr2D 91.844 282 16 2 406 680 557139878 557140159 1.030000e-103 387.0
4 TraesCS2A01G448100 chr2D 89.655 87 5 2 331 413 557163987 557164073 8.980000e-20 108.0
5 TraesCS2A01G448100 chr2B 84.162 1187 104 34 526 1664 664358881 664360031 0.000000e+00 1074.0
6 TraesCS2A01G448100 chr2B 86.806 955 64 28 737 1664 664382271 664383190 0.000000e+00 1009.0
7 TraesCS2A01G448100 chr2B 83.380 716 95 4 1662 2375 5443544 5444237 1.990000e-180 641.0
8 TraesCS2A01G448100 chr2B 90.780 282 18 4 406 680 664381889 664382169 1.040000e-98 370.0
9 TraesCS2A01G448100 chr2B 89.286 112 4 2 301 409 664358831 664358937 1.480000e-27 134.0
10 TraesCS2A01G448100 chr2B 100.000 32 0 0 717 748 664382240 664382271 2.550000e-05 60.2
11 TraesCS2A01G448100 chr4D 93.147 715 48 1 1662 2375 396731614 396730900 0.000000e+00 1048.0
12 TraesCS2A01G448100 chr7B 90.182 713 68 2 1664 2375 189501446 189502157 0.000000e+00 928.0
13 TraesCS2A01G448100 chr7B 90.335 269 26 0 30 298 735909815 735909547 1.040000e-93 353.0
14 TraesCS2A01G448100 chr7B 88.215 297 29 3 2 298 22543509 22543219 1.350000e-92 350.0
15 TraesCS2A01G448100 chr4B 90.940 298 26 1 1 298 13276322 13276618 1.320000e-107 399.0
16 TraesCS2A01G448100 chr5A 88.926 298 33 0 1 298 667025781 667026078 3.730000e-98 368.0
17 TraesCS2A01G448100 chr5A 87.375 301 37 1 1 300 129233794 129234094 6.280000e-91 344.0
18 TraesCS2A01G448100 chr3D 86.288 299 39 2 1 298 66334351 66334648 8.190000e-85 324.0
19 TraesCS2A01G448100 chr5D 85.953 299 40 2 1 298 342607256 342607553 3.810000e-83 318.0
20 TraesCS2A01G448100 chr7D 85.667 300 39 4 1 298 264483465 264483762 1.770000e-81 313.0
21 TraesCS2A01G448100 chr1A 85.811 296 41 1 1 295 505305692 505305397 1.770000e-81 313.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G448100 chr2A 697071407 697073781 2374 False 4386.000000 4386 100.000000 1 2375 1 chr2A.!!$F1 2374
1 TraesCS2A01G448100 chr2D 557139878 557141100 1222 False 712.000000 1037 90.216000 406 1549 2 chr2D.!!$F1 1143
2 TraesCS2A01G448100 chr2D 557163918 557165160 1242 False 625.000000 1142 86.780000 331 1664 2 chr2D.!!$F2 1333
3 TraesCS2A01G448100 chr2B 5443544 5444237 693 False 641.000000 641 83.380000 1662 2375 1 chr2B.!!$F1 713
4 TraesCS2A01G448100 chr2B 664358831 664360031 1200 False 604.000000 1074 86.724000 301 1664 2 chr2B.!!$F2 1363
5 TraesCS2A01G448100 chr2B 664381889 664383190 1301 False 479.733333 1009 92.528667 406 1664 3 chr2B.!!$F3 1258
6 TraesCS2A01G448100 chr4D 396730900 396731614 714 True 1048.000000 1048 93.147000 1662 2375 1 chr4D.!!$R1 713
7 TraesCS2A01G448100 chr7B 189501446 189502157 711 False 928.000000 928 90.182000 1664 2375 1 chr7B.!!$F1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.031857 TTCATGCAAAAGTGTGGGCG 59.968 50.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1802 0.036388 CCACGGGACACACAGCTTAT 60.036 55.0 0.0 0.0 0.0 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.082523 CCTGCATCGTGGTCGGGT 62.083 66.667 0.00 0.00 37.69 5.28
18 19 2.717044 CCTGCATCGTGGTCGGGTA 61.717 63.158 0.00 0.00 37.69 3.69
19 20 1.226974 CTGCATCGTGGTCGGGTAG 60.227 63.158 0.00 0.00 37.69 3.18
20 21 2.106332 GCATCGTGGTCGGGTAGG 59.894 66.667 0.00 0.00 37.69 3.18
21 22 2.718073 GCATCGTGGTCGGGTAGGT 61.718 63.158 0.00 0.00 37.69 3.08
22 23 1.895238 CATCGTGGTCGGGTAGGTT 59.105 57.895 0.00 0.00 37.69 3.50
23 24 0.179119 CATCGTGGTCGGGTAGGTTC 60.179 60.000 0.00 0.00 37.69 3.62
24 25 1.660560 ATCGTGGTCGGGTAGGTTCG 61.661 60.000 0.00 0.00 37.69 3.95
25 26 2.575461 GTGGTCGGGTAGGTTCGG 59.425 66.667 0.00 0.00 0.00 4.30
26 27 2.118076 TGGTCGGGTAGGTTCGGT 59.882 61.111 0.00 0.00 0.00 4.69
27 28 2.277591 TGGTCGGGTAGGTTCGGTG 61.278 63.158 0.00 0.00 0.00 4.94
28 29 2.575461 GTCGGGTAGGTTCGGTGG 59.425 66.667 0.00 0.00 0.00 4.61
29 30 3.384532 TCGGGTAGGTTCGGTGGC 61.385 66.667 0.00 0.00 0.00 5.01
30 31 4.462280 CGGGTAGGTTCGGTGGCC 62.462 72.222 0.00 0.00 0.00 5.36
31 32 4.105553 GGGTAGGTTCGGTGGCCC 62.106 72.222 0.00 0.00 0.00 5.80
32 33 3.324108 GGTAGGTTCGGTGGCCCA 61.324 66.667 0.00 0.00 0.00 5.36
33 34 2.267961 GTAGGTTCGGTGGCCCAG 59.732 66.667 0.00 0.00 0.00 4.45
34 35 3.712907 TAGGTTCGGTGGCCCAGC 61.713 66.667 1.91 1.91 0.00 4.85
51 52 3.790437 CGCCAGCCACAGGGAGAT 61.790 66.667 0.00 0.00 35.59 2.75
52 53 2.434843 CGCCAGCCACAGGGAGATA 61.435 63.158 0.00 0.00 35.59 1.98
53 54 1.762522 CGCCAGCCACAGGGAGATAT 61.763 60.000 0.00 0.00 35.59 1.63
54 55 0.250640 GCCAGCCACAGGGAGATATG 60.251 60.000 0.00 0.00 35.59 1.78
55 56 0.250640 CCAGCCACAGGGAGATATGC 60.251 60.000 0.00 0.00 35.59 3.14
56 57 0.471191 CAGCCACAGGGAGATATGCA 59.529 55.000 0.00 0.00 35.59 3.96
57 58 0.763652 AGCCACAGGGAGATATGCAG 59.236 55.000 0.00 0.00 35.59 4.41
58 59 0.471617 GCCACAGGGAGATATGCAGT 59.528 55.000 0.00 0.00 35.59 4.40
59 60 1.133976 GCCACAGGGAGATATGCAGTT 60.134 52.381 0.00 0.00 35.59 3.16
60 61 2.104792 GCCACAGGGAGATATGCAGTTA 59.895 50.000 0.00 0.00 35.59 2.24
61 62 3.433598 GCCACAGGGAGATATGCAGTTAA 60.434 47.826 0.00 0.00 35.59 2.01
62 63 4.130118 CCACAGGGAGATATGCAGTTAAC 58.870 47.826 0.00 0.00 35.59 2.01
63 64 4.141620 CCACAGGGAGATATGCAGTTAACT 60.142 45.833 1.12 1.12 35.59 2.24
64 65 4.813161 CACAGGGAGATATGCAGTTAACTG 59.187 45.833 27.85 27.85 46.40 3.16
77 78 5.940192 CAGTTAACTGCACTTAACATCCA 57.060 39.130 22.03 0.00 38.55 3.41
78 79 5.931532 CAGTTAACTGCACTTAACATCCAG 58.068 41.667 22.03 9.57 38.55 3.86
79 80 5.470098 CAGTTAACTGCACTTAACATCCAGT 59.530 40.000 22.03 6.22 38.55 4.00
80 81 6.649141 CAGTTAACTGCACTTAACATCCAGTA 59.351 38.462 22.03 0.00 38.55 2.74
81 82 7.334421 CAGTTAACTGCACTTAACATCCAGTAT 59.666 37.037 22.03 5.16 38.55 2.12
82 83 7.883311 AGTTAACTGCACTTAACATCCAGTATT 59.117 33.333 22.78 4.64 38.55 1.89
83 84 6.500684 AACTGCACTTAACATCCAGTATTG 57.499 37.500 0.00 0.00 35.86 1.90
84 85 4.396166 ACTGCACTTAACATCCAGTATTGC 59.604 41.667 0.00 0.00 35.20 3.56
85 86 3.373748 TGCACTTAACATCCAGTATTGCG 59.626 43.478 0.00 0.00 0.00 4.85
86 87 3.621268 GCACTTAACATCCAGTATTGCGA 59.379 43.478 0.00 0.00 0.00 5.10
87 88 4.260375 GCACTTAACATCCAGTATTGCGAG 60.260 45.833 0.00 0.00 0.00 5.03
88 89 4.870426 CACTTAACATCCAGTATTGCGAGT 59.130 41.667 0.00 0.00 0.00 4.18
89 90 5.351465 CACTTAACATCCAGTATTGCGAGTT 59.649 40.000 0.00 0.00 0.00 3.01
90 91 6.533723 CACTTAACATCCAGTATTGCGAGTTA 59.466 38.462 0.00 0.00 0.00 2.24
91 92 7.064134 CACTTAACATCCAGTATTGCGAGTTAA 59.936 37.037 0.00 0.00 0.00 2.01
92 93 7.769044 ACTTAACATCCAGTATTGCGAGTTAAT 59.231 33.333 0.00 0.00 32.04 1.40
93 94 8.500753 TTAACATCCAGTATTGCGAGTTAATT 57.499 30.769 0.00 0.00 0.00 1.40
94 95 9.602568 TTAACATCCAGTATTGCGAGTTAATTA 57.397 29.630 0.00 0.00 0.00 1.40
95 96 7.715265 ACATCCAGTATTGCGAGTTAATTAG 57.285 36.000 0.00 0.00 0.00 1.73
96 97 7.497595 ACATCCAGTATTGCGAGTTAATTAGA 58.502 34.615 0.00 0.00 0.00 2.10
97 98 7.653713 ACATCCAGTATTGCGAGTTAATTAGAG 59.346 37.037 0.00 0.00 0.00 2.43
98 99 7.342769 TCCAGTATTGCGAGTTAATTAGAGA 57.657 36.000 0.00 0.00 0.00 3.10
99 100 7.778083 TCCAGTATTGCGAGTTAATTAGAGAA 58.222 34.615 0.00 0.00 0.00 2.87
100 101 7.921214 TCCAGTATTGCGAGTTAATTAGAGAAG 59.079 37.037 0.00 0.00 0.00 2.85
101 102 7.921214 CCAGTATTGCGAGTTAATTAGAGAAGA 59.079 37.037 0.00 0.00 0.00 2.87
102 103 8.747666 CAGTATTGCGAGTTAATTAGAGAAGAC 58.252 37.037 0.00 0.00 0.00 3.01
103 104 6.814076 ATTGCGAGTTAATTAGAGAAGACG 57.186 37.500 0.00 0.00 0.00 4.18
104 105 4.669318 TGCGAGTTAATTAGAGAAGACGG 58.331 43.478 0.00 0.00 0.00 4.79
105 106 3.486474 GCGAGTTAATTAGAGAAGACGGC 59.514 47.826 0.00 0.00 0.00 5.68
106 107 4.669318 CGAGTTAATTAGAGAAGACGGCA 58.331 43.478 0.00 0.00 0.00 5.69
107 108 4.735822 CGAGTTAATTAGAGAAGACGGCAG 59.264 45.833 0.00 0.00 0.00 4.85
108 109 5.012328 AGTTAATTAGAGAAGACGGCAGG 57.988 43.478 0.00 0.00 0.00 4.85
109 110 2.990066 AATTAGAGAAGACGGCAGGG 57.010 50.000 0.00 0.00 0.00 4.45
110 111 1.867363 ATTAGAGAAGACGGCAGGGT 58.133 50.000 0.00 0.00 0.00 4.34
111 112 0.895530 TTAGAGAAGACGGCAGGGTG 59.104 55.000 0.00 0.00 0.00 4.61
112 113 0.251653 TAGAGAAGACGGCAGGGTGT 60.252 55.000 0.00 0.00 0.00 4.16
113 114 1.122019 AGAGAAGACGGCAGGGTGTT 61.122 55.000 0.00 0.00 0.00 3.32
114 115 0.250338 GAGAAGACGGCAGGGTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
115 116 0.250338 AGAAGACGGCAGGGTGTTTC 60.250 55.000 0.00 0.00 0.00 2.78
116 117 0.534203 GAAGACGGCAGGGTGTTTCA 60.534 55.000 0.00 0.00 0.00 2.69
117 118 0.110486 AAGACGGCAGGGTGTTTCAT 59.890 50.000 0.00 0.00 0.00 2.57
118 119 0.606401 AGACGGCAGGGTGTTTCATG 60.606 55.000 0.00 0.00 0.00 3.07
119 120 2.200170 GACGGCAGGGTGTTTCATGC 62.200 60.000 0.00 0.00 37.95 4.06
120 121 2.267351 CGGCAGGGTGTTTCATGCA 61.267 57.895 4.01 0.00 40.46 3.96
121 122 1.804396 CGGCAGGGTGTTTCATGCAA 61.804 55.000 0.00 0.00 40.46 4.08
122 123 0.392336 GGCAGGGTGTTTCATGCAAA 59.608 50.000 0.00 0.00 40.46 3.68
123 124 1.202627 GGCAGGGTGTTTCATGCAAAA 60.203 47.619 0.00 0.00 40.46 2.44
124 125 2.137523 GCAGGGTGTTTCATGCAAAAG 58.862 47.619 0.00 0.00 38.54 2.27
125 126 2.483538 GCAGGGTGTTTCATGCAAAAGT 60.484 45.455 0.00 0.00 38.54 2.66
126 127 3.125316 CAGGGTGTTTCATGCAAAAGTG 58.875 45.455 0.00 0.00 0.00 3.16
127 128 2.765699 AGGGTGTTTCATGCAAAAGTGT 59.234 40.909 0.00 0.00 0.00 3.55
128 129 2.865551 GGGTGTTTCATGCAAAAGTGTG 59.134 45.455 0.00 0.00 0.00 3.82
129 130 2.865551 GGTGTTTCATGCAAAAGTGTGG 59.134 45.455 0.00 0.00 0.00 4.17
130 131 2.865551 GTGTTTCATGCAAAAGTGTGGG 59.134 45.455 0.00 0.00 0.00 4.61
131 132 1.866601 GTTTCATGCAAAAGTGTGGGC 59.133 47.619 0.00 0.00 0.00 5.36
132 133 0.031857 TTCATGCAAAAGTGTGGGCG 59.968 50.000 0.00 0.00 0.00 6.13
133 134 0.821301 TCATGCAAAAGTGTGGGCGA 60.821 50.000 0.00 0.00 0.00 5.54
134 135 0.664166 CATGCAAAAGTGTGGGCGAC 60.664 55.000 0.00 0.00 0.00 5.19
135 136 2.051345 GCAAAAGTGTGGGCGACG 60.051 61.111 0.00 0.00 0.00 5.12
136 137 2.539338 GCAAAAGTGTGGGCGACGA 61.539 57.895 0.00 0.00 0.00 4.20
137 138 1.278637 CAAAAGTGTGGGCGACGAC 59.721 57.895 0.00 0.00 39.85 4.34
138 139 1.890510 AAAAGTGTGGGCGACGACC 60.891 57.895 14.55 14.55 38.45 4.79
139 140 2.596553 AAAAGTGTGGGCGACGACCA 62.597 55.000 21.26 21.26 39.14 4.02
140 141 2.989055 AAAGTGTGGGCGACGACCAG 62.989 60.000 26.25 0.00 43.97 4.00
141 142 4.295119 GTGTGGGCGACGACCAGT 62.295 66.667 26.25 0.00 43.97 4.00
142 143 3.986006 TGTGGGCGACGACCAGTC 61.986 66.667 26.25 13.67 43.97 3.51
143 144 3.986006 GTGGGCGACGACCAGTCA 61.986 66.667 26.25 0.00 43.97 3.41
144 145 3.509137 GTGGGCGACGACCAGTCAA 62.509 63.158 26.25 0.00 43.97 3.18
150 151 2.426023 ACGACCAGTCAAGCCACC 59.574 61.111 0.00 0.00 0.00 4.61
151 152 2.140792 ACGACCAGTCAAGCCACCT 61.141 57.895 0.00 0.00 0.00 4.00
152 153 1.669115 CGACCAGTCAAGCCACCTG 60.669 63.158 0.00 0.00 0.00 4.00
179 180 1.565305 CTTGTCGAGCTGTGATAGGC 58.435 55.000 0.00 0.00 0.00 3.93
180 181 0.175760 TTGTCGAGCTGTGATAGGCC 59.824 55.000 0.00 0.00 0.00 5.19
181 182 1.299468 GTCGAGCTGTGATAGGCCG 60.299 63.158 0.00 0.00 0.00 6.13
182 183 2.028190 CGAGCTGTGATAGGCCGG 59.972 66.667 0.00 0.00 0.00 6.13
183 184 2.490148 CGAGCTGTGATAGGCCGGA 61.490 63.158 5.05 0.00 0.00 5.14
184 185 1.365633 GAGCTGTGATAGGCCGGAG 59.634 63.158 5.05 0.00 0.00 4.63
185 186 1.075970 AGCTGTGATAGGCCGGAGA 60.076 57.895 5.05 0.00 0.00 3.71
186 187 1.068250 GCTGTGATAGGCCGGAGAC 59.932 63.158 5.05 0.00 0.00 3.36
187 188 1.395826 GCTGTGATAGGCCGGAGACT 61.396 60.000 5.05 1.54 0.00 3.24
188 189 1.982660 CTGTGATAGGCCGGAGACTA 58.017 55.000 5.05 4.27 0.00 2.59
189 190 2.307768 CTGTGATAGGCCGGAGACTAA 58.692 52.381 5.05 0.00 0.00 2.24
190 191 2.693591 CTGTGATAGGCCGGAGACTAAA 59.306 50.000 5.05 0.00 0.00 1.85
191 192 3.305720 TGTGATAGGCCGGAGACTAAAT 58.694 45.455 5.05 0.00 0.00 1.40
192 193 3.321111 TGTGATAGGCCGGAGACTAAATC 59.679 47.826 5.05 1.46 0.00 2.17
193 194 3.321111 GTGATAGGCCGGAGACTAAATCA 59.679 47.826 5.05 4.20 0.00 2.57
194 195 4.021016 GTGATAGGCCGGAGACTAAATCAT 60.021 45.833 5.05 0.00 0.00 2.45
195 196 4.220821 TGATAGGCCGGAGACTAAATCATC 59.779 45.833 5.05 0.00 0.00 2.92
196 197 2.398588 AGGCCGGAGACTAAATCATCA 58.601 47.619 5.05 0.00 0.00 3.07
197 198 2.103263 AGGCCGGAGACTAAATCATCAC 59.897 50.000 5.05 0.00 0.00 3.06
198 199 2.158957 GGCCGGAGACTAAATCATCACA 60.159 50.000 5.05 0.00 0.00 3.58
199 200 3.495100 GGCCGGAGACTAAATCATCACAT 60.495 47.826 5.05 0.00 0.00 3.21
200 201 3.743396 GCCGGAGACTAAATCATCACATC 59.257 47.826 5.05 0.00 0.00 3.06
201 202 4.310769 CCGGAGACTAAATCATCACATCC 58.689 47.826 0.00 0.00 0.00 3.51
202 203 4.202253 CCGGAGACTAAATCATCACATCCA 60.202 45.833 0.00 0.00 0.00 3.41
203 204 5.359756 CGGAGACTAAATCATCACATCCAA 58.640 41.667 0.00 0.00 0.00 3.53
204 205 5.994054 CGGAGACTAAATCATCACATCCAAT 59.006 40.000 0.00 0.00 0.00 3.16
205 206 6.073385 CGGAGACTAAATCATCACATCCAATG 60.073 42.308 0.00 0.00 0.00 2.82
206 207 6.293845 GGAGACTAAATCATCACATCCAATGC 60.294 42.308 0.00 0.00 0.00 3.56
207 208 6.124340 AGACTAAATCATCACATCCAATGCA 58.876 36.000 0.00 0.00 0.00 3.96
208 209 6.604396 AGACTAAATCATCACATCCAATGCAA 59.396 34.615 0.00 0.00 0.00 4.08
209 210 7.123098 AGACTAAATCATCACATCCAATGCAAA 59.877 33.333 0.00 0.00 0.00 3.68
210 211 7.788026 ACTAAATCATCACATCCAATGCAAAT 58.212 30.769 0.00 0.00 0.00 2.32
211 212 8.262227 ACTAAATCATCACATCCAATGCAAATT 58.738 29.630 0.00 0.00 0.00 1.82
212 213 6.918892 AATCATCACATCCAATGCAAATTG 57.081 33.333 0.00 0.00 0.00 2.32
213 214 5.662674 TCATCACATCCAATGCAAATTGA 57.337 34.783 0.00 0.00 33.55 2.57
214 215 5.656480 TCATCACATCCAATGCAAATTGAG 58.344 37.500 0.00 0.00 33.55 3.02
215 216 4.459390 TCACATCCAATGCAAATTGAGG 57.541 40.909 0.00 0.00 33.55 3.86
216 217 3.833650 TCACATCCAATGCAAATTGAGGT 59.166 39.130 0.00 0.00 33.55 3.85
217 218 5.015515 TCACATCCAATGCAAATTGAGGTA 58.984 37.500 0.00 0.00 33.55 3.08
218 219 5.657745 TCACATCCAATGCAAATTGAGGTAT 59.342 36.000 0.00 0.00 33.55 2.73
219 220 5.751509 CACATCCAATGCAAATTGAGGTATG 59.248 40.000 0.00 3.40 33.55 2.39
220 221 5.657745 ACATCCAATGCAAATTGAGGTATGA 59.342 36.000 0.00 0.00 33.55 2.15
221 222 6.325545 ACATCCAATGCAAATTGAGGTATGAT 59.674 34.615 0.00 0.00 33.55 2.45
222 223 6.151663 TCCAATGCAAATTGAGGTATGATG 57.848 37.500 0.00 0.00 33.55 3.07
223 224 5.892686 TCCAATGCAAATTGAGGTATGATGA 59.107 36.000 0.00 0.00 33.55 2.92
224 225 6.380560 TCCAATGCAAATTGAGGTATGATGAA 59.619 34.615 0.00 0.00 33.55 2.57
225 226 6.700081 CCAATGCAAATTGAGGTATGATGAAG 59.300 38.462 0.00 0.00 33.55 3.02
226 227 7.262772 CAATGCAAATTGAGGTATGATGAAGT 58.737 34.615 0.00 0.00 33.55 3.01
227 228 6.839124 TGCAAATTGAGGTATGATGAAGTT 57.161 33.333 0.00 0.00 0.00 2.66
228 229 6.623486 TGCAAATTGAGGTATGATGAAGTTG 58.377 36.000 0.00 0.00 0.00 3.16
229 230 5.517770 GCAAATTGAGGTATGATGAAGTTGC 59.482 40.000 0.00 0.00 39.48 4.17
230 231 6.623486 CAAATTGAGGTATGATGAAGTTGCA 58.377 36.000 0.00 0.00 0.00 4.08
231 232 7.262772 CAAATTGAGGTATGATGAAGTTGCAT 58.737 34.615 0.00 0.00 0.00 3.96
232 233 7.414222 AATTGAGGTATGATGAAGTTGCATT 57.586 32.000 0.00 0.00 0.00 3.56
233 234 6.839124 TTGAGGTATGATGAAGTTGCATTT 57.161 33.333 0.00 0.00 0.00 2.32
234 235 6.839124 TGAGGTATGATGAAGTTGCATTTT 57.161 33.333 0.00 0.00 0.00 1.82
235 236 6.623486 TGAGGTATGATGAAGTTGCATTTTG 58.377 36.000 0.00 0.00 0.00 2.44
236 237 5.413499 AGGTATGATGAAGTTGCATTTTGC 58.587 37.500 0.00 0.00 45.29 3.68
248 249 2.837498 GCATTTTGCAAGTTTGGGACT 58.163 42.857 0.00 0.00 44.26 3.85
249 250 3.988819 GCATTTTGCAAGTTTGGGACTA 58.011 40.909 0.00 0.00 44.26 2.59
250 251 4.376146 GCATTTTGCAAGTTTGGGACTAA 58.624 39.130 0.00 0.00 44.26 2.24
251 252 4.813697 GCATTTTGCAAGTTTGGGACTAAA 59.186 37.500 0.00 0.00 44.26 1.85
252 253 5.469760 GCATTTTGCAAGTTTGGGACTAAAT 59.530 36.000 0.00 0.00 44.26 1.40
253 254 6.347644 GCATTTTGCAAGTTTGGGACTAAATC 60.348 38.462 0.00 0.00 44.26 2.17
254 255 5.860941 TTTGCAAGTTTGGGACTAAATCA 57.139 34.783 0.00 0.00 37.72 2.57
255 256 6.418057 TTTGCAAGTTTGGGACTAAATCAT 57.582 33.333 0.00 0.00 37.72 2.45
256 257 5.643379 TGCAAGTTTGGGACTAAATCATC 57.357 39.130 0.00 0.00 37.72 2.92
257 258 5.076182 TGCAAGTTTGGGACTAAATCATCA 58.924 37.500 0.00 0.00 37.72 3.07
258 259 5.048083 TGCAAGTTTGGGACTAAATCATCAC 60.048 40.000 0.00 0.00 37.72 3.06
259 260 5.048083 GCAAGTTTGGGACTAAATCATCACA 60.048 40.000 0.00 0.00 37.72 3.58
260 261 6.350445 GCAAGTTTGGGACTAAATCATCACAT 60.350 38.462 0.00 0.00 37.72 3.21
261 262 7.605449 CAAGTTTGGGACTAAATCATCACATT 58.395 34.615 0.00 0.00 37.72 2.71
262 263 7.781324 AGTTTGGGACTAAATCATCACATTT 57.219 32.000 0.00 0.00 36.65 2.32
263 264 7.830739 AGTTTGGGACTAAATCATCACATTTC 58.169 34.615 0.00 0.00 36.65 2.17
264 265 7.451255 AGTTTGGGACTAAATCATCACATTTCA 59.549 33.333 0.00 0.00 36.65 2.69
265 266 7.959658 TTGGGACTAAATCATCACATTTCAT 57.040 32.000 0.00 0.00 0.00 2.57
266 267 9.473007 TTTGGGACTAAATCATCACATTTCATA 57.527 29.630 0.00 0.00 0.00 2.15
267 268 8.450578 TGGGACTAAATCATCACATTTCATAC 57.549 34.615 0.00 0.00 0.00 2.39
268 269 8.052141 TGGGACTAAATCATCACATTTCATACA 58.948 33.333 0.00 0.00 0.00 2.29
269 270 8.902806 GGGACTAAATCATCACATTTCATACAA 58.097 33.333 0.00 0.00 0.00 2.41
288 289 9.066892 TCATACAAATTAGAGTATTTGGGATGC 57.933 33.333 12.19 0.00 45.45 3.91
289 290 9.071276 CATACAAATTAGAGTATTTGGGATGCT 57.929 33.333 12.19 0.00 45.45 3.79
290 291 7.961326 ACAAATTAGAGTATTTGGGATGCTT 57.039 32.000 12.19 0.00 45.45 3.91
291 292 8.366359 ACAAATTAGAGTATTTGGGATGCTTT 57.634 30.769 12.19 0.00 45.45 3.51
292 293 8.815912 ACAAATTAGAGTATTTGGGATGCTTTT 58.184 29.630 12.19 0.00 45.45 2.27
295 296 7.875327 TTAGAGTATTTGGGATGCTTTTACC 57.125 36.000 0.00 0.00 0.00 2.85
296 297 6.079712 AGAGTATTTGGGATGCTTTTACCT 57.920 37.500 0.00 0.00 0.00 3.08
297 298 6.122964 AGAGTATTTGGGATGCTTTTACCTC 58.877 40.000 0.00 0.00 0.00 3.85
298 299 5.201243 AGTATTTGGGATGCTTTTACCTCC 58.799 41.667 0.00 0.00 0.00 4.30
299 300 3.825908 TTTGGGATGCTTTTACCTCCT 57.174 42.857 0.00 0.00 0.00 3.69
300 301 2.806945 TGGGATGCTTTTACCTCCTG 57.193 50.000 0.00 0.00 0.00 3.86
301 302 1.284785 TGGGATGCTTTTACCTCCTGG 59.715 52.381 0.00 0.00 39.83 4.45
302 303 1.564348 GGGATGCTTTTACCTCCTGGA 59.436 52.381 0.00 0.00 37.04 3.86
303 304 2.175715 GGGATGCTTTTACCTCCTGGAT 59.824 50.000 0.00 0.00 37.04 3.41
304 305 3.481453 GGATGCTTTTACCTCCTGGATC 58.519 50.000 0.00 0.00 37.04 3.36
305 306 3.117888 GGATGCTTTTACCTCCTGGATCA 60.118 47.826 0.00 0.00 37.04 2.92
306 307 4.526970 GATGCTTTTACCTCCTGGATCAA 58.473 43.478 0.00 0.00 37.04 2.57
307 308 3.686016 TGCTTTTACCTCCTGGATCAAC 58.314 45.455 0.00 0.00 37.04 3.18
308 309 2.678336 GCTTTTACCTCCTGGATCAACG 59.322 50.000 0.00 0.00 37.04 4.10
309 310 3.270877 CTTTTACCTCCTGGATCAACGG 58.729 50.000 0.00 0.00 37.04 4.44
310 311 2.241281 TTACCTCCTGGATCAACGGA 57.759 50.000 5.98 0.00 37.04 4.69
311 312 2.241281 TACCTCCTGGATCAACGGAA 57.759 50.000 5.98 0.00 37.04 4.30
312 313 1.584724 ACCTCCTGGATCAACGGAAT 58.415 50.000 5.98 0.00 37.04 3.01
313 314 1.486726 ACCTCCTGGATCAACGGAATC 59.513 52.381 5.98 0.00 37.04 2.52
314 315 1.202698 CCTCCTGGATCAACGGAATCC 60.203 57.143 0.00 6.14 34.57 3.01
315 316 0.837272 TCCTGGATCAACGGAATCCC 59.163 55.000 9.62 0.00 33.65 3.85
349 350 4.309950 GAGCCGACGGGTGGTTGT 62.310 66.667 25.61 0.00 31.55 3.32
350 351 4.309950 AGCCGACGGGTGGTTGTC 62.310 66.667 19.53 0.00 34.97 3.18
351 352 4.309950 GCCGACGGGTGGTTGTCT 62.310 66.667 17.22 0.00 34.97 3.41
352 353 2.934570 GCCGACGGGTGGTTGTCTA 61.935 63.158 17.22 0.00 34.97 2.59
353 354 1.214589 CCGACGGGTGGTTGTCTAG 59.785 63.158 5.81 0.00 32.93 2.43
354 355 1.530013 CCGACGGGTGGTTGTCTAGT 61.530 60.000 5.81 0.00 32.93 2.57
355 356 0.388134 CGACGGGTGGTTGTCTAGTG 60.388 60.000 0.00 0.00 32.93 2.74
356 357 0.669625 GACGGGTGGTTGTCTAGTGC 60.670 60.000 0.00 0.00 32.37 4.40
357 358 1.736645 CGGGTGGTTGTCTAGTGCG 60.737 63.158 0.00 0.00 0.00 5.34
358 359 1.370064 GGGTGGTTGTCTAGTGCGT 59.630 57.895 0.00 0.00 0.00 5.24
359 360 0.949105 GGGTGGTTGTCTAGTGCGTG 60.949 60.000 0.00 0.00 0.00 5.34
360 361 1.566018 GGTGGTTGTCTAGTGCGTGC 61.566 60.000 0.00 0.00 0.00 5.34
361 362 1.301401 TGGTTGTCTAGTGCGTGCC 60.301 57.895 0.00 0.00 0.00 5.01
362 363 2.380410 GGTTGTCTAGTGCGTGCCG 61.380 63.158 0.00 0.00 0.00 5.69
363 364 1.663702 GTTGTCTAGTGCGTGCCGT 60.664 57.895 0.00 0.00 0.00 5.68
364 365 1.663388 TTGTCTAGTGCGTGCCGTG 60.663 57.895 0.00 0.00 0.00 4.94
365 366 2.809601 GTCTAGTGCGTGCCGTGG 60.810 66.667 0.00 0.00 0.00 4.94
366 367 4.063967 TCTAGTGCGTGCCGTGGG 62.064 66.667 0.00 0.00 0.00 4.61
367 368 4.373116 CTAGTGCGTGCCGTGGGT 62.373 66.667 0.00 0.00 0.00 4.51
368 369 4.367023 TAGTGCGTGCCGTGGGTC 62.367 66.667 0.00 0.00 0.00 4.46
378 379 4.394712 CGTGGGTCCCTGCAGGTC 62.395 72.222 30.63 21.77 36.75 3.85
379 380 2.930562 GTGGGTCCCTGCAGGTCT 60.931 66.667 30.63 0.00 36.75 3.85
380 381 2.930019 TGGGTCCCTGCAGGTCTG 60.930 66.667 30.63 16.20 36.75 3.51
391 392 4.087892 AGGTCTGCTGCGCGGAAT 62.088 61.111 23.20 0.00 46.01 3.01
392 393 3.127533 GGTCTGCTGCGCGGAATT 61.128 61.111 23.20 0.00 46.01 2.17
393 394 2.401195 GTCTGCTGCGCGGAATTC 59.599 61.111 23.20 1.86 46.01 2.17
394 395 2.047370 TCTGCTGCGCGGAATTCA 60.047 55.556 23.20 7.30 41.31 2.57
395 396 2.099062 CTGCTGCGCGGAATTCAC 59.901 61.111 23.20 0.55 37.02 3.18
396 397 2.358615 TGCTGCGCGGAATTCACT 60.359 55.556 23.20 0.00 0.00 3.41
397 398 1.915614 CTGCTGCGCGGAATTCACTT 61.916 55.000 23.20 0.00 37.02 3.16
398 399 1.226128 GCTGCGCGGAATTCACTTC 60.226 57.895 23.20 0.00 0.00 3.01
636 683 1.376424 CCTTCACATGACGCTGCCT 60.376 57.895 0.00 0.00 0.00 4.75
641 688 1.376424 ACATGACGCTGCCTGGAAG 60.376 57.895 0.00 0.00 0.00 3.46
646 694 1.518903 GACGCTGCCTGGAAGCTTTT 61.519 55.000 24.00 8.48 38.57 2.27
683 731 1.225376 CGACACCGTTTGCTTGGCTA 61.225 55.000 0.00 0.00 0.00 3.93
759 875 3.119096 GGAACGGCCGCTCAACTC 61.119 66.667 28.30 13.82 0.00 3.01
820 961 4.219507 TCACACACACACACCAAAGAAAAT 59.780 37.500 0.00 0.00 0.00 1.82
821 962 4.326817 CACACACACACACCAAAGAAAATG 59.673 41.667 0.00 0.00 0.00 2.32
822 963 3.306703 CACACACACACCAAAGAAAATGC 59.693 43.478 0.00 0.00 0.00 3.56
823 964 3.195396 ACACACACACCAAAGAAAATGCT 59.805 39.130 0.00 0.00 0.00 3.79
850 1001 3.115554 GACCAAAAGTCAACATGCACAC 58.884 45.455 0.00 0.00 45.55 3.82
852 1003 2.159128 CCAAAAGTCAACATGCACACCA 60.159 45.455 0.00 0.00 0.00 4.17
863 1014 4.704833 CACACCAGACTGCCGGGG 62.705 72.222 2.18 0.00 34.13 5.73
934 1092 3.334691 GCATGGCCTATATAAACGAGCA 58.665 45.455 3.32 0.00 0.00 4.26
981 1142 2.715005 CAGAGCGAGCCGAGAGAG 59.285 66.667 0.00 0.00 0.00 3.20
999 1160 1.369689 GCACACTGACAAGCAAGCG 60.370 57.895 0.00 0.00 0.00 4.68
1008 1169 1.136147 CAAGCAAGCGATGGACTGC 59.864 57.895 0.00 0.00 0.00 4.40
1187 1354 4.821589 CTTCCTGCTCGACGGCCC 62.822 72.222 0.00 0.00 0.00 5.80
1385 1552 3.026879 CAGATAGCTGCGCCGACG 61.027 66.667 4.18 0.00 44.07 5.12
1386 1553 4.271816 AGATAGCTGCGCCGACGG 62.272 66.667 10.29 10.29 40.57 4.79
1387 1554 4.266070 GATAGCTGCGCCGACGGA 62.266 66.667 20.50 0.00 40.57 4.69
1388 1555 4.570663 ATAGCTGCGCCGACGGAC 62.571 66.667 20.50 9.42 40.57 4.79
1398 1565 4.570663 CGACGGACCGGCCTGATC 62.571 72.222 20.00 4.26 0.00 2.92
1436 1603 2.393768 GCATGCCGAGGTGTGAGTG 61.394 63.158 6.36 0.00 0.00 3.51
1457 1628 3.827876 TGTGACAGTCCGTAATTCCAGTA 59.172 43.478 0.00 0.00 0.00 2.74
1561 1751 3.044059 GCTCGTGCCAATGCCAGTC 62.044 63.158 0.00 0.00 36.33 3.51
1597 1788 2.504367 ACCGCTTAACATTTGCAGTCT 58.496 42.857 0.00 0.00 0.00 3.24
1610 1801 8.904099 ACATTTGCAGTCTACTTAGTTAAGTT 57.096 30.769 9.60 0.00 43.57 2.66
1611 1802 9.991906 ACATTTGCAGTCTACTTAGTTAAGTTA 57.008 29.630 9.60 0.00 43.57 2.24
1629 1820 2.665649 TATAAGCTGTGTGTCCCGTG 57.334 50.000 0.00 0.00 0.00 4.94
1657 1848 2.423892 TGATCTCGGTGTCTCTACTTGC 59.576 50.000 0.00 0.00 0.00 4.01
1685 1876 3.058293 GCGTGAATGTTGACATCTGGAAA 60.058 43.478 0.00 0.00 35.10 3.13
1732 1923 5.391950 GGACACGTAGAGTTATTACACCGAA 60.392 44.000 0.00 0.00 0.00 4.30
1733 1924 6.012658 ACACGTAGAGTTATTACACCGAAA 57.987 37.500 0.00 0.00 0.00 3.46
1784 1975 2.368875 CCTAATTGATCCGGCTACTGGT 59.631 50.000 0.00 0.00 0.00 4.00
1805 1996 3.056749 GTCAGTGGGATGACGAGTTAGTT 60.057 47.826 0.00 0.00 40.18 2.24
1808 1999 4.863131 CAGTGGGATGACGAGTTAGTTAAC 59.137 45.833 0.00 0.00 36.46 2.01
1847 2038 7.577303 AGGAGGATGCAGAGTTAATATTGAAA 58.423 34.615 0.00 0.00 0.00 2.69
1858 2049 7.282224 AGAGTTAATATTGAAAATGCCGCTACA 59.718 33.333 0.00 0.00 0.00 2.74
1880 2071 1.213926 GAGGGTGCAGAGGATTTCCAT 59.786 52.381 0.00 0.00 38.89 3.41
1940 2131 4.159244 ACAAGCCTACAAGTTACACCAA 57.841 40.909 0.00 0.00 0.00 3.67
1956 2147 5.999205 ACACCAAGCAATCATGGAAAATA 57.001 34.783 0.00 0.00 39.12 1.40
1958 2149 6.767456 ACACCAAGCAATCATGGAAAATAAA 58.233 32.000 0.00 0.00 39.12 1.40
1977 2168 0.394352 AGGAAATGATGGCCCGACAC 60.394 55.000 0.00 0.00 0.00 3.67
2005 2196 1.838077 AGGGGAAGGTAATCTGAACGG 59.162 52.381 0.00 0.00 0.00 4.44
2051 2242 2.705312 TTTGGAGAATGCCGTGCCCA 62.705 55.000 0.00 0.00 0.00 5.36
2129 2320 6.023603 AGACATTTTACAGAGAAGGGGAGTA 58.976 40.000 0.00 0.00 0.00 2.59
2187 2378 2.868253 CCAGAATCGGGGAAACACC 58.132 57.895 0.00 0.00 38.08 4.16
2189 2380 1.453155 CAGAATCGGGGAAACACCTG 58.547 55.000 0.00 0.00 38.98 4.00
2201 2392 2.396590 AACACCTGTTCGTTCAGTGT 57.603 45.000 8.27 0.00 31.64 3.55
2219 2410 1.063492 TGTAGGGAGATCAAGCCGGTA 60.063 52.381 1.90 0.00 0.00 4.02
2272 2464 2.040278 TCAAGCTGGCAACTTGGATAGT 59.960 45.455 25.60 0.00 43.79 2.12
2294 2486 6.893583 AGTATAACTGAAATGCTGGATGAGT 58.106 36.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.629050 CTACCCGACCACGATGCAGG 62.629 65.000 0.00 0.00 42.66 4.85
1 2 1.226974 CTACCCGACCACGATGCAG 60.227 63.158 0.00 0.00 42.66 4.41
2 3 2.717044 CCTACCCGACCACGATGCA 61.717 63.158 0.00 0.00 42.66 3.96
3 4 2.106332 CCTACCCGACCACGATGC 59.894 66.667 0.00 0.00 42.66 3.91
5 6 1.660560 CGAACCTACCCGACCACGAT 61.661 60.000 0.00 0.00 42.66 3.73
6 7 2.334946 CGAACCTACCCGACCACGA 61.335 63.158 0.00 0.00 42.66 4.35
7 8 2.180017 CGAACCTACCCGACCACG 59.820 66.667 0.00 0.00 39.43 4.94
8 9 2.278330 ACCGAACCTACCCGACCAC 61.278 63.158 0.00 0.00 0.00 4.16
9 10 2.118076 ACCGAACCTACCCGACCA 59.882 61.111 0.00 0.00 0.00 4.02
10 11 2.575461 CACCGAACCTACCCGACC 59.425 66.667 0.00 0.00 0.00 4.79
11 12 2.575461 CCACCGAACCTACCCGAC 59.425 66.667 0.00 0.00 0.00 4.79
12 13 3.384532 GCCACCGAACCTACCCGA 61.385 66.667 0.00 0.00 0.00 5.14
13 14 4.462280 GGCCACCGAACCTACCCG 62.462 72.222 0.00 0.00 0.00 5.28
14 15 4.105553 GGGCCACCGAACCTACCC 62.106 72.222 4.39 0.00 0.00 3.69
15 16 3.324108 TGGGCCACCGAACCTACC 61.324 66.667 0.00 0.00 40.75 3.18
16 17 2.267961 CTGGGCCACCGAACCTAC 59.732 66.667 0.00 0.00 40.75 3.18
17 18 3.712907 GCTGGGCCACCGAACCTA 61.713 66.667 0.00 0.00 40.75 3.08
34 35 1.762522 ATATCTCCCTGTGGCTGGCG 61.763 60.000 0.00 0.00 0.00 5.69
35 36 0.250640 CATATCTCCCTGTGGCTGGC 60.251 60.000 0.00 0.00 0.00 4.85
36 37 0.250640 GCATATCTCCCTGTGGCTGG 60.251 60.000 0.00 0.00 0.00 4.85
37 38 0.471191 TGCATATCTCCCTGTGGCTG 59.529 55.000 0.00 0.00 0.00 4.85
38 39 0.763652 CTGCATATCTCCCTGTGGCT 59.236 55.000 0.00 0.00 0.00 4.75
39 40 0.471617 ACTGCATATCTCCCTGTGGC 59.528 55.000 0.00 0.00 0.00 5.01
40 41 4.130118 GTTAACTGCATATCTCCCTGTGG 58.870 47.826 0.00 0.00 0.00 4.17
41 42 4.813161 CAGTTAACTGCATATCTCCCTGTG 59.187 45.833 22.03 0.00 37.15 3.66
42 43 5.028549 CAGTTAACTGCATATCTCCCTGT 57.971 43.478 22.03 0.00 37.15 4.00
55 56 5.470098 ACTGGATGTTAAGTGCAGTTAACTG 59.530 40.000 37.98 27.85 44.39 3.16
56 57 5.621193 ACTGGATGTTAAGTGCAGTTAACT 58.379 37.500 37.98 28.96 44.39 2.24
57 58 5.941948 ACTGGATGTTAAGTGCAGTTAAC 57.058 39.130 35.04 35.04 44.39 2.01
58 59 7.361713 GCAATACTGGATGTTAAGTGCAGTTAA 60.362 37.037 20.38 20.38 44.39 2.01
59 60 6.093495 GCAATACTGGATGTTAAGTGCAGTTA 59.907 38.462 16.56 10.00 44.39 2.24
60 61 5.106157 GCAATACTGGATGTTAAGTGCAGTT 60.106 40.000 16.56 12.28 44.39 3.16
62 63 4.494690 CGCAATACTGGATGTTAAGTGCAG 60.495 45.833 7.49 7.49 40.41 4.41
63 64 3.373748 CGCAATACTGGATGTTAAGTGCA 59.626 43.478 0.00 0.00 0.00 4.57
64 65 3.621268 TCGCAATACTGGATGTTAAGTGC 59.379 43.478 0.00 0.00 0.00 4.40
65 66 4.870426 ACTCGCAATACTGGATGTTAAGTG 59.130 41.667 0.00 0.00 0.00 3.16
66 67 5.086104 ACTCGCAATACTGGATGTTAAGT 57.914 39.130 0.00 0.00 0.00 2.24
67 68 7.534085 TTAACTCGCAATACTGGATGTTAAG 57.466 36.000 0.00 0.00 0.00 1.85
68 69 8.500753 AATTAACTCGCAATACTGGATGTTAA 57.499 30.769 0.00 0.00 34.57 2.01
69 70 9.256477 CTAATTAACTCGCAATACTGGATGTTA 57.744 33.333 0.00 0.00 0.00 2.41
70 71 7.985184 TCTAATTAACTCGCAATACTGGATGTT 59.015 33.333 0.00 0.00 0.00 2.71
71 72 7.497595 TCTAATTAACTCGCAATACTGGATGT 58.502 34.615 0.00 0.00 0.00 3.06
72 73 7.867909 TCTCTAATTAACTCGCAATACTGGATG 59.132 37.037 0.00 0.00 0.00 3.51
73 74 7.952671 TCTCTAATTAACTCGCAATACTGGAT 58.047 34.615 0.00 0.00 0.00 3.41
74 75 7.342769 TCTCTAATTAACTCGCAATACTGGA 57.657 36.000 0.00 0.00 0.00 3.86
75 76 7.921214 TCTTCTCTAATTAACTCGCAATACTGG 59.079 37.037 0.00 0.00 0.00 4.00
76 77 8.747666 GTCTTCTCTAATTAACTCGCAATACTG 58.252 37.037 0.00 0.00 0.00 2.74
77 78 7.644551 CGTCTTCTCTAATTAACTCGCAATACT 59.355 37.037 0.00 0.00 0.00 2.12
78 79 7.096558 CCGTCTTCTCTAATTAACTCGCAATAC 60.097 40.741 0.00 0.00 0.00 1.89
79 80 6.916387 CCGTCTTCTCTAATTAACTCGCAATA 59.084 38.462 0.00 0.00 0.00 1.90
80 81 5.749109 CCGTCTTCTCTAATTAACTCGCAAT 59.251 40.000 0.00 0.00 0.00 3.56
81 82 5.100259 CCGTCTTCTCTAATTAACTCGCAA 58.900 41.667 0.00 0.00 0.00 4.85
82 83 4.669318 CCGTCTTCTCTAATTAACTCGCA 58.331 43.478 0.00 0.00 0.00 5.10
83 84 3.486474 GCCGTCTTCTCTAATTAACTCGC 59.514 47.826 0.00 0.00 0.00 5.03
84 85 4.669318 TGCCGTCTTCTCTAATTAACTCG 58.331 43.478 0.00 0.00 0.00 4.18
85 86 5.044558 CCTGCCGTCTTCTCTAATTAACTC 58.955 45.833 0.00 0.00 0.00 3.01
86 87 4.141914 CCCTGCCGTCTTCTCTAATTAACT 60.142 45.833 0.00 0.00 0.00 2.24
87 88 4.120589 CCCTGCCGTCTTCTCTAATTAAC 58.879 47.826 0.00 0.00 0.00 2.01
88 89 3.773119 ACCCTGCCGTCTTCTCTAATTAA 59.227 43.478 0.00 0.00 0.00 1.40
89 90 3.132289 CACCCTGCCGTCTTCTCTAATTA 59.868 47.826 0.00 0.00 0.00 1.40
90 91 2.093447 CACCCTGCCGTCTTCTCTAATT 60.093 50.000 0.00 0.00 0.00 1.40
91 92 1.482593 CACCCTGCCGTCTTCTCTAAT 59.517 52.381 0.00 0.00 0.00 1.73
92 93 0.895530 CACCCTGCCGTCTTCTCTAA 59.104 55.000 0.00 0.00 0.00 2.10
93 94 0.251653 ACACCCTGCCGTCTTCTCTA 60.252 55.000 0.00 0.00 0.00 2.43
94 95 1.122019 AACACCCTGCCGTCTTCTCT 61.122 55.000 0.00 0.00 0.00 3.10
95 96 0.250338 AAACACCCTGCCGTCTTCTC 60.250 55.000 0.00 0.00 0.00 2.87
96 97 0.250338 GAAACACCCTGCCGTCTTCT 60.250 55.000 0.00 0.00 0.00 2.85
97 98 0.534203 TGAAACACCCTGCCGTCTTC 60.534 55.000 0.00 0.00 0.00 2.87
98 99 0.110486 ATGAAACACCCTGCCGTCTT 59.890 50.000 0.00 0.00 0.00 3.01
99 100 0.606401 CATGAAACACCCTGCCGTCT 60.606 55.000 0.00 0.00 0.00 4.18
100 101 1.875963 CATGAAACACCCTGCCGTC 59.124 57.895 0.00 0.00 0.00 4.79
101 102 2.268076 GCATGAAACACCCTGCCGT 61.268 57.895 0.00 0.00 0.00 5.68
102 103 1.804396 TTGCATGAAACACCCTGCCG 61.804 55.000 0.00 0.00 33.70 5.69
103 104 0.392336 TTTGCATGAAACACCCTGCC 59.608 50.000 0.00 0.00 33.70 4.85
104 105 2.137523 CTTTTGCATGAAACACCCTGC 58.862 47.619 0.00 0.00 35.21 4.85
105 106 3.125316 CACTTTTGCATGAAACACCCTG 58.875 45.455 0.00 0.00 0.00 4.45
106 107 2.765699 ACACTTTTGCATGAAACACCCT 59.234 40.909 0.00 0.00 0.00 4.34
107 108 2.865551 CACACTTTTGCATGAAACACCC 59.134 45.455 0.00 0.00 0.00 4.61
108 109 2.865551 CCACACTTTTGCATGAAACACC 59.134 45.455 0.00 0.00 0.00 4.16
109 110 2.865551 CCCACACTTTTGCATGAAACAC 59.134 45.455 0.00 0.00 0.00 3.32
110 111 2.741228 GCCCACACTTTTGCATGAAACA 60.741 45.455 0.00 0.00 0.00 2.83
111 112 1.866601 GCCCACACTTTTGCATGAAAC 59.133 47.619 0.00 0.00 0.00 2.78
112 113 1.537776 CGCCCACACTTTTGCATGAAA 60.538 47.619 0.00 0.00 0.00 2.69
113 114 0.031857 CGCCCACACTTTTGCATGAA 59.968 50.000 0.00 0.00 0.00 2.57
114 115 0.821301 TCGCCCACACTTTTGCATGA 60.821 50.000 0.00 0.00 0.00 3.07
115 116 0.664166 GTCGCCCACACTTTTGCATG 60.664 55.000 0.00 0.00 0.00 4.06
116 117 1.659794 GTCGCCCACACTTTTGCAT 59.340 52.632 0.00 0.00 0.00 3.96
117 118 2.829206 CGTCGCCCACACTTTTGCA 61.829 57.895 0.00 0.00 0.00 4.08
118 119 2.051345 CGTCGCCCACACTTTTGC 60.051 61.111 0.00 0.00 0.00 3.68
119 120 1.278637 GTCGTCGCCCACACTTTTG 59.721 57.895 0.00 0.00 0.00 2.44
120 121 1.890510 GGTCGTCGCCCACACTTTT 60.891 57.895 0.00 0.00 0.00 2.27
121 122 2.280592 GGTCGTCGCCCACACTTT 60.281 61.111 0.00 0.00 0.00 2.66
122 123 3.515316 CTGGTCGTCGCCCACACTT 62.515 63.158 0.00 0.00 0.00 3.16
123 124 3.991051 CTGGTCGTCGCCCACACT 61.991 66.667 0.00 0.00 0.00 3.55
124 125 4.295119 ACTGGTCGTCGCCCACAC 62.295 66.667 0.00 0.00 0.00 3.82
125 126 3.986006 GACTGGTCGTCGCCCACA 61.986 66.667 0.00 0.00 32.04 4.17
126 127 3.509137 TTGACTGGTCGTCGCCCAC 62.509 63.158 0.00 0.00 45.87 4.61
127 128 3.220999 CTTGACTGGTCGTCGCCCA 62.221 63.158 0.00 0.00 45.87 5.36
128 129 2.432628 CTTGACTGGTCGTCGCCC 60.433 66.667 3.72 0.00 45.87 6.13
129 130 3.112709 GCTTGACTGGTCGTCGCC 61.113 66.667 0.00 0.00 45.87 5.54
130 131 3.112709 GGCTTGACTGGTCGTCGC 61.113 66.667 0.00 0.00 45.87 5.19
131 132 2.022129 GTGGCTTGACTGGTCGTCG 61.022 63.158 0.00 0.00 45.87 5.12
132 133 1.668151 GGTGGCTTGACTGGTCGTC 60.668 63.158 0.00 0.00 43.14 4.20
133 134 2.140792 AGGTGGCTTGACTGGTCGT 61.141 57.895 0.00 0.00 0.00 4.34
134 135 1.669115 CAGGTGGCTTGACTGGTCG 60.669 63.158 0.00 0.00 0.00 4.79
135 136 1.302832 CCAGGTGGCTTGACTGGTC 60.303 63.158 0.00 0.00 45.21 4.02
136 137 2.839098 CCAGGTGGCTTGACTGGT 59.161 61.111 0.00 0.00 45.21 4.00
160 161 1.565305 GCCTATCACAGCTCGACAAG 58.435 55.000 0.00 0.00 0.00 3.16
161 162 0.175760 GGCCTATCACAGCTCGACAA 59.824 55.000 0.00 0.00 0.00 3.18
162 163 1.816537 GGCCTATCACAGCTCGACA 59.183 57.895 0.00 0.00 0.00 4.35
163 164 1.299468 CGGCCTATCACAGCTCGAC 60.299 63.158 0.00 0.00 0.00 4.20
164 165 2.490148 CCGGCCTATCACAGCTCGA 61.490 63.158 0.00 0.00 0.00 4.04
165 166 2.028190 CCGGCCTATCACAGCTCG 59.972 66.667 0.00 0.00 0.00 5.03
166 167 1.109920 TCTCCGGCCTATCACAGCTC 61.110 60.000 0.00 0.00 0.00 4.09
167 168 1.075970 TCTCCGGCCTATCACAGCT 60.076 57.895 0.00 0.00 0.00 4.24
168 169 1.068250 GTCTCCGGCCTATCACAGC 59.932 63.158 0.00 0.00 0.00 4.40
169 170 1.982660 TAGTCTCCGGCCTATCACAG 58.017 55.000 0.00 0.00 0.00 3.66
170 171 2.447408 TTAGTCTCCGGCCTATCACA 57.553 50.000 0.00 0.00 0.00 3.58
171 172 3.321111 TGATTTAGTCTCCGGCCTATCAC 59.679 47.826 0.00 0.00 0.00 3.06
172 173 3.572642 TGATTTAGTCTCCGGCCTATCA 58.427 45.455 0.00 0.00 0.00 2.15
173 174 4.220821 TGATGATTTAGTCTCCGGCCTATC 59.779 45.833 0.00 0.00 0.00 2.08
174 175 4.021016 GTGATGATTTAGTCTCCGGCCTAT 60.021 45.833 0.00 0.00 0.00 2.57
175 176 3.321111 GTGATGATTTAGTCTCCGGCCTA 59.679 47.826 0.00 0.00 0.00 3.93
176 177 2.103263 GTGATGATTTAGTCTCCGGCCT 59.897 50.000 0.00 0.00 0.00 5.19
177 178 2.158957 TGTGATGATTTAGTCTCCGGCC 60.159 50.000 0.00 0.00 0.00 6.13
178 179 3.179443 TGTGATGATTTAGTCTCCGGC 57.821 47.619 0.00 0.00 0.00 6.13
179 180 4.202253 TGGATGTGATGATTTAGTCTCCGG 60.202 45.833 0.00 0.00 0.00 5.14
180 181 4.948847 TGGATGTGATGATTTAGTCTCCG 58.051 43.478 0.00 0.00 0.00 4.63
181 182 6.293845 GCATTGGATGTGATGATTTAGTCTCC 60.294 42.308 0.00 0.00 0.00 3.71
182 183 6.261603 TGCATTGGATGTGATGATTTAGTCTC 59.738 38.462 0.00 0.00 0.00 3.36
183 184 6.124340 TGCATTGGATGTGATGATTTAGTCT 58.876 36.000 0.00 0.00 0.00 3.24
184 185 6.381481 TGCATTGGATGTGATGATTTAGTC 57.619 37.500 0.00 0.00 0.00 2.59
185 186 6.778834 TTGCATTGGATGTGATGATTTAGT 57.221 33.333 0.00 0.00 0.00 2.24
186 187 8.547894 CAATTTGCATTGGATGTGATGATTTAG 58.452 33.333 0.00 0.00 36.82 1.85
187 188 8.258708 TCAATTTGCATTGGATGTGATGATTTA 58.741 29.630 0.38 0.00 40.41 1.40
188 189 7.106890 TCAATTTGCATTGGATGTGATGATTT 58.893 30.769 0.38 0.00 40.41 2.17
189 190 6.645306 TCAATTTGCATTGGATGTGATGATT 58.355 32.000 0.38 0.00 40.41 2.57
190 191 6.228616 TCAATTTGCATTGGATGTGATGAT 57.771 33.333 0.38 0.00 40.41 2.45
191 192 5.394773 CCTCAATTTGCATTGGATGTGATGA 60.395 40.000 0.38 0.00 40.41 2.92
192 193 4.808895 CCTCAATTTGCATTGGATGTGATG 59.191 41.667 0.38 0.00 40.41 3.07
193 194 4.468510 ACCTCAATTTGCATTGGATGTGAT 59.531 37.500 0.38 0.00 40.41 3.06
194 195 3.833650 ACCTCAATTTGCATTGGATGTGA 59.166 39.130 0.38 0.00 40.41 3.58
195 196 4.196626 ACCTCAATTTGCATTGGATGTG 57.803 40.909 0.38 0.00 40.41 3.21
196 197 5.657745 TCATACCTCAATTTGCATTGGATGT 59.342 36.000 0.38 0.00 40.41 3.06
197 198 6.151663 TCATACCTCAATTTGCATTGGATG 57.848 37.500 0.38 1.25 40.41 3.51
198 199 6.551975 TCATCATACCTCAATTTGCATTGGAT 59.448 34.615 0.38 0.00 40.41 3.41
199 200 5.892686 TCATCATACCTCAATTTGCATTGGA 59.107 36.000 0.38 0.00 40.41 3.53
200 201 6.151663 TCATCATACCTCAATTTGCATTGG 57.848 37.500 0.38 0.00 40.41 3.16
201 202 7.262772 ACTTCATCATACCTCAATTTGCATTG 58.737 34.615 0.00 0.00 41.25 2.82
202 203 7.414222 ACTTCATCATACCTCAATTTGCATT 57.586 32.000 0.00 0.00 0.00 3.56
203 204 7.262772 CAACTTCATCATACCTCAATTTGCAT 58.737 34.615 0.00 0.00 0.00 3.96
204 205 6.623486 CAACTTCATCATACCTCAATTTGCA 58.377 36.000 0.00 0.00 0.00 4.08
205 206 5.517770 GCAACTTCATCATACCTCAATTTGC 59.482 40.000 0.00 0.00 0.00 3.68
206 207 6.623486 TGCAACTTCATCATACCTCAATTTG 58.377 36.000 0.00 0.00 0.00 2.32
207 208 6.839124 TGCAACTTCATCATACCTCAATTT 57.161 33.333 0.00 0.00 0.00 1.82
208 209 7.414222 AATGCAACTTCATCATACCTCAATT 57.586 32.000 0.00 0.00 0.00 2.32
209 210 7.414222 AAATGCAACTTCATCATACCTCAAT 57.586 32.000 0.00 0.00 0.00 2.57
210 211 6.839124 AAATGCAACTTCATCATACCTCAA 57.161 33.333 0.00 0.00 0.00 3.02
211 212 6.623486 CAAAATGCAACTTCATCATACCTCA 58.377 36.000 0.00 0.00 0.00 3.86
212 213 5.517770 GCAAAATGCAACTTCATCATACCTC 59.482 40.000 0.00 0.00 44.26 3.85
213 214 5.413499 GCAAAATGCAACTTCATCATACCT 58.587 37.500 0.00 0.00 44.26 3.08
214 215 5.707411 GCAAAATGCAACTTCATCATACC 57.293 39.130 0.00 0.00 44.26 2.73
228 229 2.837498 AGTCCCAAACTTGCAAAATGC 58.163 42.857 0.00 0.00 45.29 3.56
229 230 6.705381 TGATTTAGTCCCAAACTTGCAAAATG 59.295 34.615 0.00 0.00 39.55 2.32
230 231 6.825610 TGATTTAGTCCCAAACTTGCAAAAT 58.174 32.000 0.00 0.00 39.55 1.82
231 232 6.227298 TGATTTAGTCCCAAACTTGCAAAA 57.773 33.333 0.00 0.00 39.55 2.44
232 233 5.860941 TGATTTAGTCCCAAACTTGCAAA 57.139 34.783 0.00 0.00 39.55 3.68
233 234 5.538053 TGATGATTTAGTCCCAAACTTGCAA 59.462 36.000 0.00 0.00 39.55 4.08
234 235 5.048083 GTGATGATTTAGTCCCAAACTTGCA 60.048 40.000 0.00 0.00 39.55 4.08
235 236 5.048083 TGTGATGATTTAGTCCCAAACTTGC 60.048 40.000 0.00 0.00 39.55 4.01
236 237 6.573664 TGTGATGATTTAGTCCCAAACTTG 57.426 37.500 0.00 0.00 39.55 3.16
237 238 7.781324 AATGTGATGATTTAGTCCCAAACTT 57.219 32.000 0.00 0.00 39.55 2.66
238 239 7.451255 TGAAATGTGATGATTTAGTCCCAAACT 59.549 33.333 0.00 0.00 42.33 2.66
239 240 7.601856 TGAAATGTGATGATTTAGTCCCAAAC 58.398 34.615 0.00 0.00 0.00 2.93
240 241 7.773489 TGAAATGTGATGATTTAGTCCCAAA 57.227 32.000 0.00 0.00 0.00 3.28
241 242 7.959658 ATGAAATGTGATGATTTAGTCCCAA 57.040 32.000 0.00 0.00 0.00 4.12
242 243 8.052141 TGTATGAAATGTGATGATTTAGTCCCA 58.948 33.333 0.00 0.00 0.00 4.37
243 244 8.450578 TGTATGAAATGTGATGATTTAGTCCC 57.549 34.615 0.00 0.00 0.00 4.46
262 263 9.066892 GCATCCCAAATACTCTAATTTGTATGA 57.933 33.333 17.32 9.23 42.68 2.15
263 264 9.071276 AGCATCCCAAATACTCTAATTTGTATG 57.929 33.333 8.13 10.80 42.68 2.39
264 265 9.646522 AAGCATCCCAAATACTCTAATTTGTAT 57.353 29.630 8.13 0.00 42.68 2.29
265 266 9.474313 AAAGCATCCCAAATACTCTAATTTGTA 57.526 29.630 8.13 0.00 42.68 2.41
266 267 7.961326 AAGCATCCCAAATACTCTAATTTGT 57.039 32.000 8.13 0.00 42.68 2.83
269 270 8.914011 GGTAAAAGCATCCCAAATACTCTAATT 58.086 33.333 0.00 0.00 0.00 1.40
270 271 8.282256 AGGTAAAAGCATCCCAAATACTCTAAT 58.718 33.333 0.00 0.00 0.00 1.73
271 272 7.639378 AGGTAAAAGCATCCCAAATACTCTAA 58.361 34.615 0.00 0.00 0.00 2.10
272 273 7.208064 AGGTAAAAGCATCCCAAATACTCTA 57.792 36.000 0.00 0.00 0.00 2.43
273 274 6.079712 AGGTAAAAGCATCCCAAATACTCT 57.920 37.500 0.00 0.00 0.00 3.24
274 275 5.299531 GGAGGTAAAAGCATCCCAAATACTC 59.700 44.000 0.00 0.00 0.00 2.59
275 276 5.044105 AGGAGGTAAAAGCATCCCAAATACT 60.044 40.000 0.00 0.00 31.86 2.12
276 277 5.067805 CAGGAGGTAAAAGCATCCCAAATAC 59.932 44.000 0.00 0.00 31.86 1.89
277 278 5.200483 CAGGAGGTAAAAGCATCCCAAATA 58.800 41.667 0.00 0.00 31.86 1.40
278 279 4.026052 CAGGAGGTAAAAGCATCCCAAAT 58.974 43.478 0.00 0.00 31.86 2.32
279 280 3.430453 CAGGAGGTAAAAGCATCCCAAA 58.570 45.455 0.00 0.00 31.86 3.28
280 281 2.291540 CCAGGAGGTAAAAGCATCCCAA 60.292 50.000 0.00 0.00 31.86 4.12
281 282 1.284785 CCAGGAGGTAAAAGCATCCCA 59.715 52.381 0.00 0.00 31.86 4.37
282 283 1.564348 TCCAGGAGGTAAAAGCATCCC 59.436 52.381 0.00 0.00 35.89 3.85
283 284 3.117888 TGATCCAGGAGGTAAAAGCATCC 60.118 47.826 0.00 0.00 35.89 3.51
284 285 4.156455 TGATCCAGGAGGTAAAAGCATC 57.844 45.455 0.00 0.00 35.89 3.91
285 286 4.273318 GTTGATCCAGGAGGTAAAAGCAT 58.727 43.478 0.00 0.00 35.89 3.79
286 287 3.686016 GTTGATCCAGGAGGTAAAAGCA 58.314 45.455 0.00 0.00 35.89 3.91
287 288 2.678336 CGTTGATCCAGGAGGTAAAAGC 59.322 50.000 0.00 0.00 35.89 3.51
288 289 3.055385 TCCGTTGATCCAGGAGGTAAAAG 60.055 47.826 0.00 0.00 35.89 2.27
289 290 2.907696 TCCGTTGATCCAGGAGGTAAAA 59.092 45.455 0.00 0.00 35.89 1.52
290 291 2.542550 TCCGTTGATCCAGGAGGTAAA 58.457 47.619 0.00 0.00 35.89 2.01
291 292 2.241281 TCCGTTGATCCAGGAGGTAA 57.759 50.000 0.00 0.00 35.89 2.85
292 293 2.241281 TTCCGTTGATCCAGGAGGTA 57.759 50.000 0.00 0.00 35.23 3.08
293 294 1.486726 GATTCCGTTGATCCAGGAGGT 59.513 52.381 0.00 0.00 35.23 3.85
294 295 1.202698 GGATTCCGTTGATCCAGGAGG 60.203 57.143 0.00 0.00 35.23 4.30
295 296 1.202698 GGGATTCCGTTGATCCAGGAG 60.203 57.143 0.00 0.00 36.22 3.69
296 297 0.837272 GGGATTCCGTTGATCCAGGA 59.163 55.000 10.08 0.00 36.22 3.86
297 298 3.403936 GGGATTCCGTTGATCCAGG 57.596 57.895 10.08 0.00 36.22 4.45
332 333 4.309950 ACAACCACCCGTCGGCTC 62.310 66.667 5.50 0.00 0.00 4.70
333 334 4.309950 GACAACCACCCGTCGGCT 62.310 66.667 5.50 0.00 0.00 5.52
334 335 2.830704 CTAGACAACCACCCGTCGGC 62.831 65.000 5.50 0.00 37.23 5.54
335 336 1.214589 CTAGACAACCACCCGTCGG 59.785 63.158 3.60 3.60 37.23 4.79
336 337 0.388134 CACTAGACAACCACCCGTCG 60.388 60.000 0.00 0.00 37.23 5.12
337 338 0.669625 GCACTAGACAACCACCCGTC 60.670 60.000 0.00 0.00 0.00 4.79
338 339 1.370064 GCACTAGACAACCACCCGT 59.630 57.895 0.00 0.00 0.00 5.28
339 340 1.736645 CGCACTAGACAACCACCCG 60.737 63.158 0.00 0.00 0.00 5.28
340 341 0.949105 CACGCACTAGACAACCACCC 60.949 60.000 0.00 0.00 0.00 4.61
341 342 1.566018 GCACGCACTAGACAACCACC 61.566 60.000 0.00 0.00 0.00 4.61
342 343 1.566018 GGCACGCACTAGACAACCAC 61.566 60.000 0.00 0.00 0.00 4.16
343 344 1.301401 GGCACGCACTAGACAACCA 60.301 57.895 0.00 0.00 0.00 3.67
344 345 3.562635 GGCACGCACTAGACAACC 58.437 61.111 0.00 0.00 0.00 3.77
361 362 4.394712 GACCTGCAGGGACCCACG 62.395 72.222 35.42 9.25 40.27 4.94
362 363 2.930562 AGACCTGCAGGGACCCAC 60.931 66.667 35.42 18.26 40.27 4.61
363 364 2.930019 CAGACCTGCAGGGACCCA 60.930 66.667 35.42 0.00 40.27 4.51
409 410 3.515286 GATCGCCTCCGTGTCCGA 61.515 66.667 0.00 0.00 35.63 4.55
444 445 2.722094 TCCCGTTGATCCAATTTCCTG 58.278 47.619 0.00 0.00 0.00 3.86
488 489 2.111043 CGCACCAGACAACCACCT 59.889 61.111 0.00 0.00 0.00 4.00
641 688 1.442769 TGTGAGAGCGATGGAAAAGC 58.557 50.000 0.00 0.00 0.00 3.51
646 694 0.388520 CGTGTTGTGAGAGCGATGGA 60.389 55.000 0.00 0.00 0.00 3.41
649 697 0.313987 TGTCGTGTTGTGAGAGCGAT 59.686 50.000 0.00 0.00 34.10 4.58
652 700 1.548973 CGGTGTCGTGTTGTGAGAGC 61.549 60.000 0.00 0.00 0.00 4.09
704 761 2.550978 CTACCACTAGGCAACGGAATG 58.449 52.381 0.00 0.00 46.39 2.67
709 789 0.179108 GAGGCTACCACTAGGCAACG 60.179 60.000 4.34 0.00 46.03 4.10
927 1085 2.299013 TGAGGTAGAATGTGTGCTCGTT 59.701 45.455 0.00 0.00 0.00 3.85
934 1092 3.100671 GAGAGGGTGAGGTAGAATGTGT 58.899 50.000 0.00 0.00 0.00 3.72
981 1142 1.369689 CGCTTGCTTGTCAGTGTGC 60.370 57.895 0.00 0.00 0.00 4.57
1298 1465 2.046892 CCCAGAGCACCACCTTCG 60.047 66.667 0.00 0.00 0.00 3.79
1385 1552 2.798148 AAACACGATCAGGCCGGTCC 62.798 60.000 0.08 4.26 0.00 4.46
1386 1553 1.375523 AAACACGATCAGGCCGGTC 60.376 57.895 0.00 0.00 0.00 4.79
1387 1554 1.671054 CAAACACGATCAGGCCGGT 60.671 57.895 1.90 0.00 0.00 5.28
1388 1555 0.744414 ATCAAACACGATCAGGCCGG 60.744 55.000 0.00 0.00 0.00 6.13
1389 1556 0.652592 GATCAAACACGATCAGGCCG 59.347 55.000 0.00 0.00 41.29 6.13
1390 1557 0.652592 CGATCAAACACGATCAGGCC 59.347 55.000 0.00 0.00 41.65 5.19
1391 1558 1.324736 GACGATCAAACACGATCAGGC 59.675 52.381 0.00 0.00 41.65 4.85
1398 1565 3.155998 GCATCAAAGACGATCAAACACG 58.844 45.455 0.00 0.00 0.00 4.49
1436 1603 3.314541 ACTGGAATTACGGACTGTCAC 57.685 47.619 10.38 0.00 0.00 3.67
1457 1628 2.111043 CGTGCCCACCTGACAACT 59.889 61.111 0.00 0.00 0.00 3.16
1610 1801 1.206132 CCACGGGACACACAGCTTATA 59.794 52.381 0.00 0.00 0.00 0.98
1611 1802 0.036388 CCACGGGACACACAGCTTAT 60.036 55.000 0.00 0.00 0.00 1.73
1629 1820 1.359459 GACACCGAGATCAAACGCCC 61.359 60.000 0.00 0.00 0.00 6.13
1657 1848 1.336440 TGTCAACATTCACGCCAAAGG 59.664 47.619 0.00 0.00 0.00 3.11
1724 1915 1.287217 TATTGGCCCCTTTCGGTGTA 58.713 50.000 0.00 0.00 0.00 2.90
1732 1923 0.853530 GGTCAGGATATTGGCCCCTT 59.146 55.000 0.00 0.00 36.84 3.95
1733 1924 0.328450 TGGTCAGGATATTGGCCCCT 60.328 55.000 0.00 0.00 42.28 4.79
1760 1951 2.633481 AGTAGCCGGATCAATTAGGTCC 59.367 50.000 5.05 0.00 0.00 4.46
1784 1975 2.803956 ACTAACTCGTCATCCCACTGA 58.196 47.619 0.00 0.00 0.00 3.41
1805 1996 2.561419 CTCCTCCCAGAAAGTGTCGTTA 59.439 50.000 0.00 0.00 0.00 3.18
1808 1999 0.247736 CCTCCTCCCAGAAAGTGTCG 59.752 60.000 0.00 0.00 0.00 4.35
1847 2038 1.995626 ACCCTCCTGTAGCGGCATT 60.996 57.895 1.45 0.00 0.00 3.56
1858 2049 0.915364 GAAATCCTCTGCACCCTCCT 59.085 55.000 0.00 0.00 0.00 3.69
1880 2071 4.505808 CCTTTGTATCAAAATGCCATGCA 58.494 39.130 0.00 0.00 44.86 3.96
1932 2123 5.798125 TTTTCCATGATTGCTTGGTGTAA 57.202 34.783 0.00 0.00 39.63 2.41
1940 2131 8.542080 TCATTTCCTTTATTTTCCATGATTGCT 58.458 29.630 0.00 0.00 0.00 3.91
1956 2147 1.272425 TGTCGGGCCATCATTTCCTTT 60.272 47.619 4.39 0.00 0.00 3.11
1958 2149 0.394352 GTGTCGGGCCATCATTTCCT 60.394 55.000 4.39 0.00 0.00 3.36
1977 2168 1.580066 TTACCTTCCCCTGGGGCATG 61.580 60.000 27.93 16.10 43.94 4.06
2005 2196 4.161189 TCTTCCATCTCACATCTCCTTCAC 59.839 45.833 0.00 0.00 0.00 3.18
2051 2242 5.047092 CCACAGAAAATGCTTTATTGACCCT 60.047 40.000 0.00 0.00 0.00 4.34
2129 2320 3.350833 GCATCTGTGGTCCTCAATCTTT 58.649 45.455 0.00 0.00 0.00 2.52
2187 2378 2.557056 TCTCCCTACACTGAACGAACAG 59.443 50.000 10.78 10.78 42.78 3.16
2189 2380 3.192844 TGATCTCCCTACACTGAACGAAC 59.807 47.826 0.00 0.00 0.00 3.95
2201 2392 2.248248 CATACCGGCTTGATCTCCCTA 58.752 52.381 0.00 0.00 0.00 3.53
2219 2410 1.454479 CGCCCTCATTTCCTGCCAT 60.454 57.895 0.00 0.00 0.00 4.40
2272 2464 7.066163 CACAACTCATCCAGCATTTCAGTTATA 59.934 37.037 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.