Multiple sequence alignment - TraesCS2A01G447800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G447800 chr2A 100.000 4728 0 0 1 4728 696914032 696918759 0.000000e+00 8732
1 TraesCS2A01G447800 chr2D 90.299 3948 243 84 71 3956 556937780 556941649 0.000000e+00 5040
2 TraesCS2A01G447800 chr2D 82.353 425 32 20 4130 4514 556941754 556942175 3.530000e-86 329
3 TraesCS2A01G447800 chr2B 94.444 1980 88 12 1794 3757 664212259 664214232 0.000000e+00 3027
4 TraesCS2A01G447800 chr2B 87.611 904 49 46 816 1700 664210811 664211670 0.000000e+00 990
5 TraesCS2A01G447800 chr2B 84.895 523 40 19 4185 4680 664214657 664215167 4.250000e-135 492
6 TraesCS2A01G447800 chr2B 84.498 458 49 17 3 452 664209969 664210412 2.610000e-117 433
7 TraesCS2A01G447800 chr6B 81.550 271 45 5 505 771 652627091 652626822 7.970000e-53 219
8 TraesCS2A01G447800 chr4A 81.387 274 44 6 538 805 89678170 89677898 2.870000e-52 217
9 TraesCS2A01G447800 chr6A 81.111 270 48 3 505 771 55882311 55882042 3.710000e-51 213
10 TraesCS2A01G447800 chr5B 79.421 311 55 9 505 807 482295640 482295331 1.330000e-50 211
11 TraesCS2A01G447800 chr5B 79.288 309 55 9 503 804 8364004 8364310 1.720000e-49 207
12 TraesCS2A01G447800 chrUn 79.139 302 60 2 507 805 110516138 110516439 6.200000e-49 206
13 TraesCS2A01G447800 chr1B 78.730 315 57 10 500 806 591107003 591107315 8.020000e-48 202
14 TraesCS2A01G447800 chr5A 78.710 310 58 8 505 807 703192975 703192667 2.890000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G447800 chr2A 696914032 696918759 4727 False 8732.0 8732 100.000 1 4728 1 chr2A.!!$F1 4727
1 TraesCS2A01G447800 chr2D 556937780 556942175 4395 False 2684.5 5040 86.326 71 4514 2 chr2D.!!$F1 4443
2 TraesCS2A01G447800 chr2B 664209969 664215167 5198 False 1235.5 3027 87.862 3 4680 4 chr2B.!!$F1 4677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.038526 AACGAGACTGAAATCCGCGT 60.039 50.0 4.92 0.0 33.24 6.01 F
264 266 0.107410 AACAGTCACTTTGCCCGACA 60.107 50.0 0.00 0.0 31.92 4.35 F
892 1108 0.179006 GGAGGGCTGGCTAAATCAGG 60.179 60.0 0.00 0.0 33.16 3.86 F
2517 3267 0.109272 CATTGCTTGCTGGTGCTCTG 60.109 55.0 0.00 0.0 40.48 3.35 F
2562 3312 0.183492 TGGTTGTCTTTGCTGCCTCT 59.817 50.0 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1122 1354 0.033991 CTCCTCCTCCTCCTTGACGA 60.034 60.0 0.0 0.0 0.00 4.20 R
1124 1356 0.336737 TCCTCCTCCTCCTCCTTGAC 59.663 60.0 0.0 0.0 0.00 3.18 R
2562 3312 0.251033 AGCATGAAGAAGCACCAGCA 60.251 50.0 0.0 0.0 45.49 4.41 R
3724 4478 0.107848 ACATAAGAAGGGGAACGGCG 60.108 55.0 4.8 4.8 0.00 6.46 R
3821 4579 0.169672 CAAGCAGATTGAACCGGCTG 59.830 55.0 0.0 0.0 41.83 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.038526 AACGAGACTGAAATCCGCGT 60.039 50.000 4.92 0.00 33.24 6.01
23 24 1.464429 CGAGACTGAAATCCGCGTCG 61.464 60.000 4.92 0.00 0.00 5.12
52 53 5.147162 GTTCACACTCCAAATCATTTCGTC 58.853 41.667 0.00 0.00 0.00 4.20
56 57 4.455877 ACACTCCAAATCATTTCGTCTTCC 59.544 41.667 0.00 0.00 0.00 3.46
73 75 1.893315 TCCTACCTTGCCTGGCTTAT 58.107 50.000 21.03 5.43 0.00 1.73
120 122 4.384547 GCTCGCCGTTGAAAATTTTTGTAT 59.615 37.500 4.63 0.00 0.00 2.29
208 210 3.606065 GAGCACGGCGACACGTAGT 62.606 63.158 16.62 0.00 46.75 2.73
213 215 1.062440 CACGGCGACACGTAGTATACA 59.938 52.381 16.62 0.00 46.75 2.29
214 216 1.942657 ACGGCGACACGTAGTATACAT 59.057 47.619 16.62 0.00 46.58 2.29
215 217 3.059665 CACGGCGACACGTAGTATACATA 60.060 47.826 16.62 0.00 46.75 2.29
217 219 3.486584 GGCGACACGTAGTATACATAGC 58.513 50.000 5.50 0.00 43.24 2.97
218 220 3.151481 GCGACACGTAGTATACATAGCG 58.849 50.000 5.50 6.29 43.24 4.26
219 221 3.151481 CGACACGTAGTATACATAGCGC 58.849 50.000 0.00 0.00 43.24 5.92
220 222 3.151481 GACACGTAGTATACATAGCGCG 58.849 50.000 0.00 0.00 43.24 6.86
221 223 2.096069 ACACGTAGTATACATAGCGCGG 60.096 50.000 8.83 0.00 43.24 6.46
222 224 1.466167 ACGTAGTATACATAGCGCGGG 59.534 52.381 8.83 0.00 43.24 6.13
223 225 1.202110 CGTAGTATACATAGCGCGGGG 60.202 57.143 8.83 0.00 43.24 5.73
224 226 0.813184 TAGTATACATAGCGCGGGGC 59.187 55.000 8.83 9.26 44.05 5.80
260 262 1.933181 GCAAAAACAGTCACTTTGCCC 59.067 47.619 13.23 0.00 45.85 5.36
261 263 2.192624 CAAAAACAGTCACTTTGCCCG 58.807 47.619 0.00 0.00 0.00 6.13
262 264 1.757682 AAAACAGTCACTTTGCCCGA 58.242 45.000 0.00 0.00 0.00 5.14
263 265 1.021968 AAACAGTCACTTTGCCCGAC 58.978 50.000 0.00 0.00 0.00 4.79
264 266 0.107410 AACAGTCACTTTGCCCGACA 60.107 50.000 0.00 0.00 31.92 4.35
265 267 0.814010 ACAGTCACTTTGCCCGACAC 60.814 55.000 0.00 0.00 31.92 3.67
266 268 0.813610 CAGTCACTTTGCCCGACACA 60.814 55.000 0.00 0.00 31.92 3.72
267 269 0.814010 AGTCACTTTGCCCGACACAC 60.814 55.000 0.00 0.00 31.92 3.82
268 270 1.092921 GTCACTTTGCCCGACACACA 61.093 55.000 0.00 0.00 0.00 3.72
282 295 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
301 314 1.735198 CGGCGCGTCCTCTACAAAA 60.735 57.895 4.51 0.00 0.00 2.44
322 335 1.153353 CGCACGATAAACAAGTGGGT 58.847 50.000 0.00 0.00 41.78 4.51
343 356 4.507756 GGTAACAAAAGCCAGCTCAAAAAG 59.492 41.667 0.00 0.00 0.00 2.27
348 361 2.808523 AGCCAGCTCAAAAAGAAAGC 57.191 45.000 0.00 0.00 36.27 3.51
350 363 1.932156 GCCAGCTCAAAAAGAAAGCGG 60.932 52.381 0.00 0.00 40.95 5.52
352 365 0.961753 AGCTCAAAAAGAAAGCGGGG 59.038 50.000 0.00 0.00 40.95 5.73
395 411 1.014352 CGAGACCGGCCTAAATTTGG 58.986 55.000 0.00 0.00 0.00 3.28
426 442 1.247567 CGCCACAGACCAAAGGAAAT 58.752 50.000 0.00 0.00 0.00 2.17
443 459 5.518865 AGGAAATCTGGCCTAAAAAGCATA 58.481 37.500 3.32 0.00 31.31 3.14
454 662 9.600432 TGGCCTAAAAAGCATATTTATTATCCT 57.400 29.630 3.32 0.00 0.00 3.24
516 728 4.037446 AGCAAAAATCAGCGAACCAAACTA 59.963 37.500 0.00 0.00 35.48 2.24
517 729 4.923281 GCAAAAATCAGCGAACCAAACTAT 59.077 37.500 0.00 0.00 0.00 2.12
519 731 5.705609 AAAATCAGCGAACCAAACTATGT 57.294 34.783 0.00 0.00 0.00 2.29
536 748 9.877178 CAAACTATGTTTGGATAGTTAGAGAGT 57.123 33.333 13.49 0.00 44.75 3.24
558 771 2.174639 CAGTGGTATCCCAGCCCATTAA 59.825 50.000 0.00 0.00 42.94 1.40
563 776 3.396611 GGTATCCCAGCCCATTAAGGTTA 59.603 47.826 0.00 0.00 34.66 2.85
567 780 2.430694 CCCAGCCCATTAAGGTTAAAGC 59.569 50.000 0.00 0.00 34.66 3.51
581 794 0.670546 TAAAGCTCTGGTGCTCGCAC 60.671 55.000 13.37 13.37 43.24 5.34
622 835 2.058913 ATTTTCGGCGATGCGTTTTT 57.941 40.000 11.76 0.00 0.00 1.94
628 841 0.800012 GGCGATGCGTTTTTAGTGGA 59.200 50.000 0.00 0.00 0.00 4.02
631 844 2.727916 GCGATGCGTTTTTAGTGGAAGG 60.728 50.000 0.00 0.00 0.00 3.46
632 845 2.159572 CGATGCGTTTTTAGTGGAAGGG 60.160 50.000 0.00 0.00 0.00 3.95
635 848 2.224917 TGCGTTTTTAGTGGAAGGGGAT 60.225 45.455 0.00 0.00 0.00 3.85
661 874 3.739703 TCGACTACGAGGGGCATAT 57.260 52.632 0.00 0.00 43.81 1.78
663 876 0.243907 CGACTACGAGGGGCATATGG 59.756 60.000 4.56 0.00 42.66 2.74
670 883 1.134098 CGAGGGGCATATGGTGACTTT 60.134 52.381 4.56 0.00 35.58 2.66
679 892 6.238759 GGGCATATGGTGACTTTGTAAATCTC 60.239 42.308 4.56 0.00 35.58 2.75
688 901 9.383519 GGTGACTTTGTAAATCTCAAGATGATA 57.616 33.333 0.00 0.00 34.49 2.15
702 916 3.088532 AGATGATATCCGGCTCAGTCTC 58.911 50.000 0.00 0.00 0.00 3.36
709 923 1.309499 CCGGCTCAGTCTCTCGAAGT 61.309 60.000 0.00 0.00 0.00 3.01
712 926 1.271102 GGCTCAGTCTCTCGAAGTTGT 59.729 52.381 0.00 0.00 0.00 3.32
719 933 6.745116 TCAGTCTCTCGAAGTTGTTCATAAA 58.255 36.000 0.00 0.00 32.36 1.40
720 934 7.207383 TCAGTCTCTCGAAGTTGTTCATAAAA 58.793 34.615 0.00 0.00 32.36 1.52
721 935 7.872993 TCAGTCTCTCGAAGTTGTTCATAAAAT 59.127 33.333 0.00 0.00 32.36 1.82
739 953 9.384764 TCATAAAATTACGGTATGAATGTGTGA 57.615 29.630 0.00 0.00 32.63 3.58
744 958 6.474819 TTACGGTATGAATGTGTGAGTTTG 57.525 37.500 0.00 0.00 0.00 2.93
752 966 6.367374 TGAATGTGTGAGTTTGTAGGGATA 57.633 37.500 0.00 0.00 0.00 2.59
758 972 5.408604 GTGTGAGTTTGTAGGGATAAGTGTG 59.591 44.000 0.00 0.00 0.00 3.82
761 977 5.071250 TGAGTTTGTAGGGATAAGTGTGTGT 59.929 40.000 0.00 0.00 0.00 3.72
770 986 7.907841 AGGGATAAGTGTGTGTGTATGTATA 57.092 36.000 0.00 0.00 0.00 1.47
783 999 7.118535 TGTGTGTATGTATAAATGTTTGCGTCT 59.881 33.333 0.00 0.00 0.00 4.18
784 1000 7.425309 GTGTGTATGTATAAATGTTTGCGTCTG 59.575 37.037 0.00 0.00 0.00 3.51
787 1003 9.320352 TGTATGTATAAATGTTTGCGTCTGTAT 57.680 29.630 0.00 0.00 0.00 2.29
788 1004 9.793245 GTATGTATAAATGTTTGCGTCTGTATC 57.207 33.333 0.00 0.00 0.00 2.24
790 1006 6.532302 TGTATAAATGTTTGCGTCTGTATCGT 59.468 34.615 0.00 0.00 0.00 3.73
794 1010 2.219903 TGTTTGCGTCTGTATCGTGTTG 59.780 45.455 0.00 0.00 0.00 3.33
798 1014 3.124560 TGCGTCTGTATCGTGTTGAAAA 58.875 40.909 0.00 0.00 0.00 2.29
799 1015 3.556365 TGCGTCTGTATCGTGTTGAAAAA 59.444 39.130 0.00 0.00 0.00 1.94
854 1070 6.747280 GCACAGCAAATCGTTCAAGTTATTAT 59.253 34.615 0.00 0.00 0.00 1.28
855 1071 7.273381 GCACAGCAAATCGTTCAAGTTATTATT 59.727 33.333 0.00 0.00 0.00 1.40
856 1072 9.767684 CACAGCAAATCGTTCAAGTTATTATTA 57.232 29.630 0.00 0.00 0.00 0.98
857 1073 9.769093 ACAGCAAATCGTTCAAGTTATTATTAC 57.231 29.630 0.00 0.00 0.00 1.89
858 1074 9.767684 CAGCAAATCGTTCAAGTTATTATTACA 57.232 29.630 0.00 0.00 0.00 2.41
859 1075 9.988350 AGCAAATCGTTCAAGTTATTATTACAG 57.012 29.630 0.00 0.00 0.00 2.74
860 1076 9.982291 GCAAATCGTTCAAGTTATTATTACAGA 57.018 29.630 0.00 0.00 0.00 3.41
881 1097 1.756538 GAGAAGAAGAGAGGAGGGCTG 59.243 57.143 0.00 0.00 0.00 4.85
882 1098 0.829990 GAAGAAGAGAGGAGGGCTGG 59.170 60.000 0.00 0.00 0.00 4.85
883 1099 1.271127 AAGAAGAGAGGAGGGCTGGC 61.271 60.000 0.00 0.00 0.00 4.85
884 1100 1.688884 GAAGAGAGGAGGGCTGGCT 60.689 63.158 0.00 0.00 0.00 4.75
892 1108 0.179006 GGAGGGCTGGCTAAATCAGG 60.179 60.000 0.00 0.00 33.16 3.86
900 1116 3.243839 GCTGGCTAAATCAGGAGAGAGAG 60.244 52.174 0.00 0.00 33.16 3.20
902 1118 4.614475 TGGCTAAATCAGGAGAGAGAGAA 58.386 43.478 0.00 0.00 0.00 2.87
903 1119 5.026121 TGGCTAAATCAGGAGAGAGAGAAA 58.974 41.667 0.00 0.00 0.00 2.52
904 1120 5.128499 TGGCTAAATCAGGAGAGAGAGAAAG 59.872 44.000 0.00 0.00 0.00 2.62
905 1121 5.362430 GGCTAAATCAGGAGAGAGAGAAAGA 59.638 44.000 0.00 0.00 0.00 2.52
907 1123 7.327214 GCTAAATCAGGAGAGAGAGAAAGAAA 58.673 38.462 0.00 0.00 0.00 2.52
908 1124 7.492344 GCTAAATCAGGAGAGAGAGAAAGAAAG 59.508 40.741 0.00 0.00 0.00 2.62
911 1127 6.985653 TCAGGAGAGAGAGAAAGAAAGAAA 57.014 37.500 0.00 0.00 0.00 2.52
915 1131 7.930865 CAGGAGAGAGAGAAAGAAAGAAAGAAA 59.069 37.037 0.00 0.00 0.00 2.52
916 1132 8.659527 AGGAGAGAGAGAAAGAAAGAAAGAAAT 58.340 33.333 0.00 0.00 0.00 2.17
977 1209 2.028020 CCCTCCTCCGCCATATAAACTC 60.028 54.545 0.00 0.00 0.00 3.01
1031 1263 1.222113 GGAAGGAAAGGGAGCCGAG 59.778 63.158 0.00 0.00 0.00 4.63
1065 1297 3.033909 CCCCTCCCCAAATTTCATCTTC 58.966 50.000 0.00 0.00 0.00 2.87
1066 1298 2.689983 CCCTCCCCAAATTTCATCTTCG 59.310 50.000 0.00 0.00 0.00 3.79
1073 1305 5.402398 CCCAAATTTCATCTTCGTTCTTCC 58.598 41.667 0.00 0.00 0.00 3.46
1076 1308 2.743636 TTCATCTTCGTTCTTCCGCT 57.256 45.000 0.00 0.00 0.00 5.52
1077 1309 2.279582 TCATCTTCGTTCTTCCGCTC 57.720 50.000 0.00 0.00 0.00 5.03
1078 1310 1.135083 TCATCTTCGTTCTTCCGCTCC 60.135 52.381 0.00 0.00 0.00 4.70
1079 1311 1.134965 CATCTTCGTTCTTCCGCTCCT 60.135 52.381 0.00 0.00 0.00 3.69
1080 1312 0.526662 TCTTCGTTCTTCCGCTCCTC 59.473 55.000 0.00 0.00 0.00 3.71
1081 1313 0.528470 CTTCGTTCTTCCGCTCCTCT 59.472 55.000 0.00 0.00 0.00 3.69
1082 1314 0.526662 TTCGTTCTTCCGCTCCTCTC 59.473 55.000 0.00 0.00 0.00 3.20
1083 1315 1.139947 CGTTCTTCCGCTCCTCTCC 59.860 63.158 0.00 0.00 0.00 3.71
1084 1316 1.316706 CGTTCTTCCGCTCCTCTCCT 61.317 60.000 0.00 0.00 0.00 3.69
1085 1317 0.458260 GTTCTTCCGCTCCTCTCCTC 59.542 60.000 0.00 0.00 0.00 3.71
1086 1318 1.032657 TTCTTCCGCTCCTCTCCTCG 61.033 60.000 0.00 0.00 0.00 4.63
1091 1323 3.591835 GCTCCTCTCCTCGCCTCG 61.592 72.222 0.00 0.00 0.00 4.63
1127 1359 3.833645 CCGGCCGGATTCTCGTCA 61.834 66.667 41.82 0.00 37.50 4.35
1128 1360 2.183300 CGGCCGGATTCTCGTCAA 59.817 61.111 20.10 0.00 0.00 3.18
1129 1361 1.878522 CGGCCGGATTCTCGTCAAG 60.879 63.158 20.10 0.00 0.00 3.02
1130 1362 1.521681 GGCCGGATTCTCGTCAAGG 60.522 63.158 5.05 0.00 0.00 3.61
1149 1381 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
1331 1565 6.260714 CCAAATCCTCACGTAATCATCATTCA 59.739 38.462 0.00 0.00 0.00 2.57
1334 1568 5.541845 TCCTCACGTAATCATCATTCATCC 58.458 41.667 0.00 0.00 0.00 3.51
1367 1601 0.591236 CTTGTTTCGGTTGGTGCGTG 60.591 55.000 0.00 0.00 0.00 5.34
1368 1602 2.353030 GTTTCGGTTGGTGCGTGC 60.353 61.111 0.00 0.00 0.00 5.34
1369 1603 3.943034 TTTCGGTTGGTGCGTGCG 61.943 61.111 0.00 0.00 0.00 5.34
1426 1660 3.249605 GCAATCGCATGCCGCAAC 61.250 61.111 13.15 0.00 42.60 4.17
1455 1689 1.130955 TCGCGTAGTTTTCGTGGTTC 58.869 50.000 5.77 0.00 38.95 3.62
1460 1694 2.091588 CGTAGTTTTCGTGGTTCCATCG 59.908 50.000 0.00 1.68 0.00 3.84
1517 1751 1.591158 GAGGCGATTCGATTTGCGTTA 59.409 47.619 10.88 0.00 41.80 3.18
1518 1752 2.004017 AGGCGATTCGATTTGCGTTAA 58.996 42.857 10.88 0.00 41.80 2.01
1519 1753 2.612212 AGGCGATTCGATTTGCGTTAAT 59.388 40.909 10.88 0.00 41.80 1.40
1522 1756 4.264380 GGCGATTCGATTTGCGTTAATTTT 59.736 37.500 10.88 0.00 41.80 1.82
1523 1757 5.173347 GCGATTCGATTTGCGTTAATTTTG 58.827 37.500 10.88 0.00 41.80 2.44
1524 1758 5.703428 CGATTCGATTTGCGTTAATTTTGG 58.297 37.500 0.00 0.00 41.80 3.28
1526 1760 6.183359 CGATTCGATTTGCGTTAATTTTGGTT 60.183 34.615 0.00 0.00 41.80 3.67
1527 1761 5.814314 TCGATTTGCGTTAATTTTGGTTG 57.186 34.783 0.00 0.00 41.80 3.77
1645 1884 3.450457 AGGTTTTCAATGCAGAAACCACA 59.550 39.130 25.61 3.99 37.24 4.17
1650 1889 3.419943 TCAATGCAGAAACCACATGCTA 58.580 40.909 0.00 0.00 40.62 3.49
1667 1907 2.444388 TGCTATTCATGGATCCAAGCCT 59.556 45.455 25.57 12.71 0.00 4.58
1700 1941 7.981789 TGGAACAGTTGATAGATGCTAGTTTAG 59.018 37.037 0.00 0.00 0.00 1.85
1758 2291 1.019805 GTAACGACCTCAGCCTTGGC 61.020 60.000 2.97 2.97 0.00 4.52
1792 2341 0.259938 GGAGGGCATGGATCTGGTTT 59.740 55.000 0.00 0.00 0.00 3.27
1797 2534 4.424842 AGGGCATGGATCTGGTTTAAAAA 58.575 39.130 0.00 0.00 0.00 1.94
1864 2601 6.515272 ACTGCCGATTTATTTCAAACTGAT 57.485 33.333 0.00 0.00 0.00 2.90
2001 2744 1.559682 AGCATGGTTCCACGGACTAAT 59.440 47.619 0.00 0.00 0.00 1.73
2203 2948 2.789339 CGTAACATGTATCTGTCGCAGG 59.211 50.000 0.00 0.00 31.51 4.85
2217 2962 1.884926 GCAGGCGTGTGAGCTATCC 60.885 63.158 8.40 0.00 37.29 2.59
2228 2973 1.068588 TGAGCTATCCGCACGCTTTAT 59.931 47.619 0.00 0.00 42.61 1.40
2244 2989 5.065859 ACGCTTTATAGTTATGCAATGCACA 59.934 36.000 11.23 0.00 43.04 4.57
2245 2990 6.144854 CGCTTTATAGTTATGCAATGCACAT 58.855 36.000 11.23 0.00 43.04 3.21
2246 2991 6.303970 CGCTTTATAGTTATGCAATGCACATC 59.696 38.462 11.23 0.00 43.04 3.06
2312 3059 1.530013 AAAGCATGTGCACTGGGAGC 61.530 55.000 19.41 13.88 45.16 4.70
2322 3069 0.321564 CACTGGGAGCGTCCAATTGA 60.322 55.000 7.12 0.00 38.64 2.57
2339 3086 0.956902 TGATTGTGCTGCGTGCTGAT 60.957 50.000 2.69 0.00 43.37 2.90
2517 3267 0.109272 CATTGCTTGCTGGTGCTCTG 60.109 55.000 0.00 0.00 40.48 3.35
2562 3312 0.183492 TGGTTGTCTTTGCTGCCTCT 59.817 50.000 0.00 0.00 0.00 3.69
2592 3342 4.261741 GCTTCTTCATGCTTTTTCCTGTCA 60.262 41.667 0.00 0.00 0.00 3.58
2596 3346 5.593909 TCTTCATGCTTTTTCCTGTCAAAGA 59.406 36.000 0.00 0.00 32.56 2.52
2687 3438 9.632638 AATAAGTTCAGCACCAATATTAGTCAT 57.367 29.630 0.00 0.00 0.00 3.06
2809 3560 7.828508 TCCTTTAGAACTGTGTAGTAACTCA 57.171 36.000 0.00 0.00 35.69 3.41
2846 3597 3.507233 TGATTTGTCTGCATTTCCAGGTC 59.493 43.478 0.00 0.00 33.64 3.85
2915 3666 2.301296 CACCCCAACATTGCCAAATACA 59.699 45.455 0.00 0.00 0.00 2.29
3038 3790 7.988028 AGGGTAAGTTTCTTGCTTCAGATATAC 59.012 37.037 0.00 0.00 0.00 1.47
3067 3819 2.158769 CCATATACTGCCCTTGAGTGCA 60.159 50.000 0.00 0.00 35.86 4.57
3190 3942 1.557269 CCCAGTCAGTAGCCCTGCTT 61.557 60.000 0.00 0.00 41.25 3.91
3359 4111 0.903942 GCTTCATTGGATTTGGGCCA 59.096 50.000 0.00 0.00 0.00 5.36
3449 4201 4.410400 GGACCCCAAGTCTGCCCG 62.410 72.222 0.00 0.00 45.54 6.13
3475 4227 1.227205 CCTGCTGGAGATCTGCGTC 60.227 63.158 9.88 4.31 42.34 5.19
3480 4232 2.583593 GGAGATCTGCGTCGCCAC 60.584 66.667 15.88 3.45 37.91 5.01
3590 4344 3.777465 TCGGATGTGTAGACAAGTAGC 57.223 47.619 0.00 0.00 35.11 3.58
3611 4365 4.980805 TGTGCCGTTCGTCAGCCC 62.981 66.667 0.00 0.00 0.00 5.19
3660 4414 2.421424 GCAGCTAGTCCAAATCCTTGTG 59.579 50.000 0.00 0.00 0.00 3.33
3745 4499 1.379527 CCGTTCCCCTTCTTATGTGC 58.620 55.000 0.00 0.00 0.00 4.57
3748 4502 1.745653 GTTCCCCTTCTTATGTGCAGC 59.254 52.381 0.00 0.00 0.00 5.25
3757 4511 5.575606 CCTTCTTATGTGCAGCTTGATTTTG 59.424 40.000 0.00 0.00 0.00 2.44
3758 4512 4.487948 TCTTATGTGCAGCTTGATTTTGC 58.512 39.130 0.00 0.00 38.30 3.68
3769 4523 4.021981 AGCTTGATTTTGCTGTACCTTTCC 60.022 41.667 0.00 0.00 38.21 3.13
3784 4538 3.054361 ACCTTTCCCCTTATGTGTAGCTG 60.054 47.826 0.00 0.00 0.00 4.24
3799 4553 1.844687 AGCTGGATTTTTCTGAGCCC 58.155 50.000 0.00 0.00 0.00 5.19
3800 4554 0.453390 GCTGGATTTTTCTGAGCCCG 59.547 55.000 0.00 0.00 0.00 6.13
3803 4557 1.037579 GGATTTTTCTGAGCCCGGGG 61.038 60.000 25.28 9.31 0.00 5.73
3815 4573 0.540133 GCCCGGGGTTCAGGTTTTTA 60.540 55.000 25.28 0.00 0.00 1.52
3821 4579 4.820173 CCGGGGTTCAGGTTTTTATATCTC 59.180 45.833 0.00 0.00 0.00 2.75
3825 4583 5.299531 GGGTTCAGGTTTTTATATCTCAGCC 59.700 44.000 0.00 0.00 0.00 4.85
3826 4584 5.007724 GGTTCAGGTTTTTATATCTCAGCCG 59.992 44.000 0.00 0.00 0.00 5.52
3850 4614 1.068748 CAATCTGCTTGCCTGTCACAC 60.069 52.381 0.00 0.00 0.00 3.82
3879 4683 6.536582 ACCATCAGTACTCATGATCTTTTTCG 59.463 38.462 8.52 0.00 35.20 3.46
3930 4739 5.681639 TCTTTGAGATGACAGCATGATGAT 58.318 37.500 19.60 0.60 39.69 2.45
3936 4745 3.918294 TGACAGCATGATGATCCTGAA 57.082 42.857 19.60 0.00 39.69 3.02
3937 4746 4.224991 TGACAGCATGATGATCCTGAAA 57.775 40.909 19.60 0.00 39.69 2.69
3938 4747 4.196971 TGACAGCATGATGATCCTGAAAG 58.803 43.478 19.60 0.00 39.69 2.62
3956 4765 6.633500 TGAAAGGGATAGTGTCAAGTTTTG 57.367 37.500 0.00 0.00 0.00 2.44
3957 4766 5.534654 TGAAAGGGATAGTGTCAAGTTTTGG 59.465 40.000 0.00 0.00 0.00 3.28
3958 4767 4.034285 AGGGATAGTGTCAAGTTTTGGG 57.966 45.455 0.00 0.00 0.00 4.12
3959 4768 2.492088 GGGATAGTGTCAAGTTTTGGGC 59.508 50.000 0.00 0.00 0.00 5.36
3960 4769 2.492088 GGATAGTGTCAAGTTTTGGGCC 59.508 50.000 0.00 0.00 0.00 5.80
3963 4772 2.183679 AGTGTCAAGTTTTGGGCCAAA 58.816 42.857 27.28 27.28 0.00 3.28
3966 4775 3.312146 GTGTCAAGTTTTGGGCCAAATTG 59.688 43.478 30.82 29.07 33.19 2.32
3967 4776 3.054802 TGTCAAGTTTTGGGCCAAATTGT 60.055 39.130 30.20 18.71 33.19 2.71
3968 4777 3.944650 GTCAAGTTTTGGGCCAAATTGTT 59.055 39.130 30.20 22.12 33.19 2.83
3970 4779 5.012893 TCAAGTTTTGGGCCAAATTGTTTT 58.987 33.333 30.20 19.44 33.19 2.43
3971 4780 5.124617 TCAAGTTTTGGGCCAAATTGTTTTC 59.875 36.000 30.20 17.47 33.19 2.29
3972 4781 4.854173 AGTTTTGGGCCAAATTGTTTTCT 58.146 34.783 30.82 16.65 33.19 2.52
3973 4782 5.260424 AGTTTTGGGCCAAATTGTTTTCTT 58.740 33.333 30.82 7.50 33.19 2.52
3974 4783 6.418946 AGTTTTGGGCCAAATTGTTTTCTTA 58.581 32.000 30.82 10.39 33.19 2.10
3975 4784 6.542005 AGTTTTGGGCCAAATTGTTTTCTTAG 59.458 34.615 30.82 0.00 33.19 2.18
3976 4785 5.878406 TTGGGCCAAATTGTTTTCTTAGA 57.122 34.783 18.51 0.00 0.00 2.10
3977 4786 5.467035 TGGGCCAAATTGTTTTCTTAGAG 57.533 39.130 2.13 0.00 0.00 2.43
3978 4787 5.144100 TGGGCCAAATTGTTTTCTTAGAGA 58.856 37.500 2.13 0.00 0.00 3.10
3979 4788 5.243730 TGGGCCAAATTGTTTTCTTAGAGAG 59.756 40.000 2.13 0.00 0.00 3.20
3980 4789 5.243954 GGGCCAAATTGTTTTCTTAGAGAGT 59.756 40.000 4.39 0.00 0.00 3.24
3981 4790 6.433093 GGGCCAAATTGTTTTCTTAGAGAGTA 59.567 38.462 4.39 0.00 0.00 2.59
3982 4791 7.362142 GGGCCAAATTGTTTTCTTAGAGAGTAG 60.362 40.741 4.39 0.00 0.00 2.57
3983 4792 7.175119 GGCCAAATTGTTTTCTTAGAGAGTAGT 59.825 37.037 0.00 0.00 0.00 2.73
3984 4793 8.568794 GCCAAATTGTTTTCTTAGAGAGTAGTT 58.431 33.333 0.00 0.00 0.00 2.24
3991 4800 9.326413 TGTTTTCTTAGAGAGTAGTTTTTCAGG 57.674 33.333 0.00 0.00 0.00 3.86
3992 4801 9.327628 GTTTTCTTAGAGAGTAGTTTTTCAGGT 57.672 33.333 0.00 0.00 0.00 4.00
4026 4835 4.825085 GGATAGTGTCAAGTTTTGGACCAA 59.175 41.667 1.69 1.69 33.09 3.67
4027 4836 5.048713 GGATAGTGTCAAGTTTTGGACCAAG 60.049 44.000 7.07 0.00 33.09 3.61
4028 4837 2.427095 AGTGTCAAGTTTTGGACCAAGC 59.573 45.455 7.07 4.98 33.09 4.01
4029 4838 2.427095 GTGTCAAGTTTTGGACCAAGCT 59.573 45.455 7.07 7.24 33.09 3.74
4030 4839 2.426738 TGTCAAGTTTTGGACCAAGCTG 59.573 45.455 7.07 4.12 33.09 4.24
4045 4880 4.517075 ACCAAGCTGTTTTCTTAGAGAAGC 59.483 41.667 0.00 0.00 35.37 3.86
4056 4891 5.717078 TCTTAGAGAAGCGTTTTCAGGTA 57.283 39.130 4.94 0.00 32.21 3.08
4059 4894 6.987992 TCTTAGAGAAGCGTTTTCAGGTAAAA 59.012 34.615 4.94 0.00 32.13 1.52
4067 4902 6.452242 AGCGTTTTCAGGTAAAATTTTAGGG 58.548 36.000 10.92 4.37 39.22 3.53
4068 4903 5.119588 GCGTTTTCAGGTAAAATTTTAGGGC 59.880 40.000 10.92 0.18 39.22 5.19
4070 4905 6.364976 CGTTTTCAGGTAAAATTTTAGGGCAG 59.635 38.462 10.92 1.20 39.22 4.85
4071 4906 7.438564 GTTTTCAGGTAAAATTTTAGGGCAGA 58.561 34.615 10.92 3.34 39.22 4.26
4073 4908 8.887264 TTTCAGGTAAAATTTTAGGGCAGATA 57.113 30.769 10.92 0.00 0.00 1.98
4075 4910 8.463930 TCAGGTAAAATTTTAGGGCAGATATG 57.536 34.615 10.92 1.41 0.00 1.78
4076 4911 7.505585 TCAGGTAAAATTTTAGGGCAGATATGG 59.494 37.037 10.92 0.00 0.00 2.74
4078 4913 7.505923 AGGTAAAATTTTAGGGCAGATATGGTC 59.494 37.037 10.92 0.00 0.00 4.02
4082 4917 7.978099 AATTTTAGGGCAGATATGGTCTTTT 57.022 32.000 0.00 0.00 34.00 2.27
4083 4918 6.773976 TTTTAGGGCAGATATGGTCTTTTG 57.226 37.500 0.00 0.00 34.00 2.44
4084 4919 5.450818 TTAGGGCAGATATGGTCTTTTGT 57.549 39.130 0.00 0.00 34.00 2.83
4086 4921 4.677182 AGGGCAGATATGGTCTTTTGTTT 58.323 39.130 0.00 0.00 34.00 2.83
4087 4922 5.086621 AGGGCAGATATGGTCTTTTGTTTT 58.913 37.500 0.00 0.00 34.00 2.43
4088 4923 5.543790 AGGGCAGATATGGTCTTTTGTTTTT 59.456 36.000 0.00 0.00 34.00 1.94
4140 4988 6.959639 TTTTTGAGAATTGCTAAGGTCAGT 57.040 33.333 0.00 0.00 0.00 3.41
4142 4990 6.959639 TTTGAGAATTGCTAAGGTCAGTTT 57.040 33.333 0.00 0.00 0.00 2.66
4168 5016 1.319614 CGGGCCAAATTGGGGTAGTG 61.320 60.000 14.59 0.00 38.19 2.74
4181 5029 3.477210 GGGTAGTGAAGCCCAGATAAG 57.523 52.381 0.00 0.00 44.23 1.73
4183 5031 3.454812 GGGTAGTGAAGCCCAGATAAGAA 59.545 47.826 0.00 0.00 44.23 2.52
4191 5064 7.554476 AGTGAAGCCCAGATAAGAATTTAAGAC 59.446 37.037 0.00 0.00 0.00 3.01
4248 5126 4.135153 CCGCCGTCTCCTCCACTG 62.135 72.222 0.00 0.00 0.00 3.66
4249 5127 4.135153 CGCCGTCTCCTCCACTGG 62.135 72.222 0.00 0.00 0.00 4.00
4250 5128 2.997897 GCCGTCTCCTCCACTGGT 60.998 66.667 0.00 0.00 0.00 4.00
4251 5129 3.007973 GCCGTCTCCTCCACTGGTC 62.008 68.421 0.00 0.00 0.00 4.02
4252 5130 1.606601 CCGTCTCCTCCACTGGTCA 60.607 63.158 0.00 0.00 0.00 4.02
4253 5131 1.599606 CCGTCTCCTCCACTGGTCAG 61.600 65.000 0.00 0.00 0.00 3.51
4254 5132 0.609406 CGTCTCCTCCACTGGTCAGA 60.609 60.000 4.84 0.00 0.00 3.27
4295 5194 4.521062 CCCAAGCCGGAGAGCGAG 62.521 72.222 5.05 0.00 36.56 5.03
4373 5272 0.179124 CTAGTGAGTCCAGCTTCCGC 60.179 60.000 0.00 0.00 0.00 5.54
4381 5280 2.047465 CAGCTTCCGCTCTGCTGT 60.047 61.111 6.09 0.00 45.15 4.40
4394 5293 0.594796 CTGCTGTTTTGTGTTCCGCC 60.595 55.000 0.00 0.00 0.00 6.13
4397 5296 0.099791 CTGTTTTGTGTTCCGCCGTT 59.900 50.000 0.00 0.00 0.00 4.44
4401 5300 0.304098 TTTGTGTTCCGCCGTTTACG 59.696 50.000 0.00 0.00 39.44 3.18
4444 5357 1.379527 CGGATTGGGGAAGTAGTTGC 58.620 55.000 0.00 0.00 0.00 4.17
4466 5379 2.032178 CCGCGAGAAAAATCCAAGGATC 59.968 50.000 8.23 0.00 33.08 3.36
4467 5380 2.032178 CGCGAGAAAAATCCAAGGATCC 59.968 50.000 2.48 2.48 33.08 3.36
4468 5381 3.016736 GCGAGAAAAATCCAAGGATCCA 58.983 45.455 15.82 0.00 33.08 3.41
4473 5386 2.834638 AAATCCAAGGATCCACCAGG 57.165 50.000 15.82 9.85 42.04 4.45
4499 5418 0.685097 TTGCTTCGCTGTAGAACCCT 59.315 50.000 0.00 0.00 0.00 4.34
4508 5427 2.102757 GCTGTAGAACCCTAACCTAGGC 59.897 54.545 9.30 0.00 44.86 3.93
4533 5452 2.022918 AGGAGTAGATGTAGGGCCAAGT 60.023 50.000 6.18 0.00 0.00 3.16
4551 5470 5.888105 CCAAGTAGAGAAATGGCTGATTTG 58.112 41.667 0.00 0.00 34.18 2.32
4558 5477 6.069331 AGAGAAATGGCTGATTTGCATATCT 58.931 36.000 16.62 0.00 34.18 1.98
4578 5497 2.974698 GCTCTGTGCTTGTGCGGT 60.975 61.111 0.00 0.00 43.34 5.68
4610 5529 0.041238 AGATCGGACAGGGGTCAAGA 59.959 55.000 0.00 0.00 46.17 3.02
4612 5531 1.617947 ATCGGACAGGGGTCAAGAGC 61.618 60.000 0.00 0.00 46.17 4.09
4644 5563 6.012745 AGTGTGGAATTTTAATGAGGCTTCT 58.987 36.000 0.00 0.00 0.00 2.85
4648 5567 5.105063 GGAATTTTAATGAGGCTTCTGTGC 58.895 41.667 0.00 0.00 0.00 4.57
4659 5578 1.925946 GCTTCTGTGCAAAACGCGAAT 60.926 47.619 15.93 0.00 46.97 3.34
4660 5579 1.971962 CTTCTGTGCAAAACGCGAATC 59.028 47.619 15.93 0.00 46.97 2.52
4661 5580 1.225855 TCTGTGCAAAACGCGAATCT 58.774 45.000 15.93 0.00 46.97 2.40
4668 5587 3.153735 GCAAAACGCGAATCTGTAGTTC 58.846 45.455 15.93 0.00 0.00 3.01
4669 5588 3.363575 GCAAAACGCGAATCTGTAGTTCA 60.364 43.478 15.93 0.00 0.00 3.18
4670 5589 4.669197 GCAAAACGCGAATCTGTAGTTCAT 60.669 41.667 15.93 0.00 0.00 2.57
4671 5590 4.584029 AAACGCGAATCTGTAGTTCATG 57.416 40.909 15.93 0.00 0.00 3.07
4673 5592 1.860950 CGCGAATCTGTAGTTCATGGG 59.139 52.381 0.00 0.00 0.00 4.00
4680 5599 7.041098 GCGAATCTGTAGTTCATGGGAAAATAT 60.041 37.037 0.00 0.00 34.13 1.28
4681 5600 9.489084 CGAATCTGTAGTTCATGGGAAAATATA 57.511 33.333 0.00 0.00 34.13 0.86
4687 5606 9.839817 TGTAGTTCATGGGAAAATATATTTCGA 57.160 29.630 11.08 0.00 34.13 3.71
4691 5610 9.965824 GTTCATGGGAAAATATATTTCGATTGT 57.034 29.630 11.08 0.00 34.13 2.71
4704 5623 6.633500 ATTTCGATTGTTTTCTGGTTGAGA 57.367 33.333 0.00 0.00 0.00 3.27
4705 5624 6.633500 TTTCGATTGTTTTCTGGTTGAGAT 57.367 33.333 0.00 0.00 0.00 2.75
4706 5625 6.633500 TTCGATTGTTTTCTGGTTGAGATT 57.367 33.333 0.00 0.00 0.00 2.40
4707 5626 6.000891 TCGATTGTTTTCTGGTTGAGATTG 57.999 37.500 0.00 0.00 0.00 2.67
4708 5627 5.530915 TCGATTGTTTTCTGGTTGAGATTGT 59.469 36.000 0.00 0.00 0.00 2.71
4709 5628 5.626543 CGATTGTTTTCTGGTTGAGATTGTG 59.373 40.000 0.00 0.00 0.00 3.33
4710 5629 6.513230 CGATTGTTTTCTGGTTGAGATTGTGA 60.513 38.462 0.00 0.00 0.00 3.58
4711 5630 6.522625 TTGTTTTCTGGTTGAGATTGTGAA 57.477 33.333 0.00 0.00 0.00 3.18
4712 5631 6.135290 TGTTTTCTGGTTGAGATTGTGAAG 57.865 37.500 0.00 0.00 0.00 3.02
4713 5632 5.652014 TGTTTTCTGGTTGAGATTGTGAAGT 59.348 36.000 0.00 0.00 0.00 3.01
4714 5633 5.756195 TTTCTGGTTGAGATTGTGAAGTG 57.244 39.130 0.00 0.00 0.00 3.16
4715 5634 3.743521 TCTGGTTGAGATTGTGAAGTGG 58.256 45.455 0.00 0.00 0.00 4.00
4716 5635 2.816087 CTGGTTGAGATTGTGAAGTGGG 59.184 50.000 0.00 0.00 0.00 4.61
4717 5636 2.441375 TGGTTGAGATTGTGAAGTGGGA 59.559 45.455 0.00 0.00 0.00 4.37
4718 5637 2.814336 GGTTGAGATTGTGAAGTGGGAC 59.186 50.000 0.00 0.00 0.00 4.46
4719 5638 3.476552 GTTGAGATTGTGAAGTGGGACA 58.523 45.455 0.00 0.00 0.00 4.02
4720 5639 3.407424 TGAGATTGTGAAGTGGGACAG 57.593 47.619 0.00 0.00 41.80 3.51
4722 5641 3.901222 TGAGATTGTGAAGTGGGACAGTA 59.099 43.478 0.00 0.00 43.84 2.74
4723 5642 4.246458 GAGATTGTGAAGTGGGACAGTAC 58.754 47.826 0.00 0.00 43.84 2.73
4724 5643 3.646162 AGATTGTGAAGTGGGACAGTACA 59.354 43.478 0.00 0.00 43.84 2.90
4725 5644 4.287067 AGATTGTGAAGTGGGACAGTACAT 59.713 41.667 0.00 0.00 43.84 2.29
4726 5645 4.431416 TTGTGAAGTGGGACAGTACATT 57.569 40.909 0.00 0.00 43.84 2.71
4727 5646 4.431416 TGTGAAGTGGGACAGTACATTT 57.569 40.909 0.00 0.00 43.84 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.256174 CGCGGATTTCAGTCTCGTTTA 58.744 47.619 0.00 0.00 0.00 2.01
1 2 1.068474 CGCGGATTTCAGTCTCGTTT 58.932 50.000 0.00 0.00 0.00 3.60
5 6 0.179171 TCGACGCGGATTTCAGTCTC 60.179 55.000 12.47 0.00 0.00 3.36
21 22 1.044611 TGGAGTGTGAACCATGTCGA 58.955 50.000 0.00 0.00 0.00 4.20
23 24 3.820467 TGATTTGGAGTGTGAACCATGTC 59.180 43.478 0.00 0.00 36.02 3.06
52 53 0.329596 AAGCCAGGCAAGGTAGGAAG 59.670 55.000 15.80 0.00 0.00 3.46
56 57 5.010012 CCATTTTATAAGCCAGGCAAGGTAG 59.990 44.000 15.80 0.00 0.00 3.18
73 75 3.304794 CGTTGGCCTTCGTTTCCATTTTA 60.305 43.478 3.32 0.00 0.00 1.52
120 122 7.397221 AGAGAGATTTGATGTGACATTTACCA 58.603 34.615 0.00 0.00 0.00 3.25
185 187 1.153628 GTGTCGCCGTGCTCCTAAT 60.154 57.895 0.00 0.00 0.00 1.73
208 210 0.037697 CTTGCCCCGCGCTATGTATA 60.038 55.000 5.56 0.00 38.78 1.47
213 215 4.794648 TTGCTTGCCCCGCGCTAT 62.795 61.111 5.56 0.00 38.78 2.97
218 220 4.729856 CAGCTTTGCTTGCCCCGC 62.730 66.667 0.00 0.00 36.40 6.13
219 221 4.060038 CCAGCTTTGCTTGCCCCG 62.060 66.667 0.00 0.00 36.40 5.73
220 222 1.757423 TTTCCAGCTTTGCTTGCCCC 61.757 55.000 0.00 0.00 36.40 5.80
221 223 0.320160 CTTTCCAGCTTTGCTTGCCC 60.320 55.000 0.00 0.00 36.40 5.36
222 224 0.947660 GCTTTCCAGCTTTGCTTGCC 60.948 55.000 0.00 0.00 43.51 4.52
223 225 2.525422 GCTTTCCAGCTTTGCTTGC 58.475 52.632 0.00 0.00 43.51 4.01
234 236 4.799564 AAGTGACTGTTTTTGCTTTCCA 57.200 36.364 0.00 0.00 0.00 3.53
259 261 1.016653 TGTGTGTGTGTGTGTGTCGG 61.017 55.000 0.00 0.00 0.00 4.79
260 262 0.094558 GTGTGTGTGTGTGTGTGTCG 59.905 55.000 0.00 0.00 0.00 4.35
261 263 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
262 264 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
263 265 1.128507 GAGTGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
264 266 1.438651 GAGTGTGTGTGTGTGTGTGT 58.561 50.000 0.00 0.00 0.00 3.72
265 267 0.369931 CGAGTGTGTGTGTGTGTGTG 59.630 55.000 0.00 0.00 0.00 3.82
266 268 0.739462 CCGAGTGTGTGTGTGTGTGT 60.739 55.000 0.00 0.00 0.00 3.72
267 269 2.005995 CCGAGTGTGTGTGTGTGTG 58.994 57.895 0.00 0.00 0.00 3.82
268 270 1.813753 GCCGAGTGTGTGTGTGTGT 60.814 57.895 0.00 0.00 0.00 3.72
282 295 2.144833 TTTTGTAGAGGACGCGCCGA 62.145 55.000 5.73 0.00 43.43 5.54
301 314 1.533731 CCCACTTGTTTATCGTGCGTT 59.466 47.619 0.00 0.00 0.00 4.84
322 335 5.590530 TCTTTTTGAGCTGGCTTTTGTTA 57.409 34.783 0.00 0.00 0.00 2.41
343 356 2.605837 TTTGTTTTTCCCCCGCTTTC 57.394 45.000 0.00 0.00 0.00 2.62
494 705 3.123050 AGTTTGGTTCGCTGATTTTTGC 58.877 40.909 0.00 0.00 0.00 3.68
495 706 5.920273 ACATAGTTTGGTTCGCTGATTTTTG 59.080 36.000 0.00 0.00 0.00 2.44
496 707 6.084326 ACATAGTTTGGTTCGCTGATTTTT 57.916 33.333 0.00 0.00 0.00 1.94
500 711 4.082787 CCAAACATAGTTTGGTTCGCTGAT 60.083 41.667 25.85 0.00 42.92 2.90
501 712 3.252215 CCAAACATAGTTTGGTTCGCTGA 59.748 43.478 25.85 0.00 42.92 4.26
516 728 7.364232 CCACTGACTCTCTAACTATCCAAACAT 60.364 40.741 0.00 0.00 0.00 2.71
517 729 6.071334 CCACTGACTCTCTAACTATCCAAACA 60.071 42.308 0.00 0.00 0.00 2.83
519 731 6.017192 ACCACTGACTCTCTAACTATCCAAA 58.983 40.000 0.00 0.00 0.00 3.28
558 771 1.338200 CGAGCACCAGAGCTTTAACCT 60.338 52.381 0.00 0.00 46.75 3.50
563 776 1.963338 GTGCGAGCACCAGAGCTTT 60.963 57.895 16.66 0.00 46.75 3.51
567 780 0.877071 AAATTGTGCGAGCACCAGAG 59.123 50.000 23.31 0.00 45.63 3.35
588 801 7.309177 TCGCCGAAAATTCTGAAATAAATTCA 58.691 30.769 0.00 0.00 45.71 2.57
589 802 7.734538 TCGCCGAAAATTCTGAAATAAATTC 57.265 32.000 0.00 0.00 38.60 2.17
590 803 7.254084 GCATCGCCGAAAATTCTGAAATAAATT 60.254 33.333 0.00 0.00 0.00 1.82
632 845 3.637297 GTAGTCGACGGGAACATCC 57.363 57.895 10.46 0.00 35.23 3.51
648 861 1.045407 GTCACCATATGCCCCTCGTA 58.955 55.000 0.00 0.00 0.00 3.43
654 867 5.594317 AGATTTACAAAGTCACCATATGCCC 59.406 40.000 0.00 0.00 0.00 5.36
655 868 6.318648 TGAGATTTACAAAGTCACCATATGCC 59.681 38.462 0.00 0.00 0.00 4.40
658 871 9.911788 ATCTTGAGATTTACAAAGTCACCATAT 57.088 29.630 0.00 0.00 0.00 1.78
661 874 7.223584 TCATCTTGAGATTTACAAAGTCACCA 58.776 34.615 0.00 0.00 31.21 4.17
670 883 6.014242 AGCCGGATATCATCTTGAGATTTACA 60.014 38.462 5.05 0.00 26.96 2.41
679 892 3.257873 AGACTGAGCCGGATATCATCTTG 59.742 47.826 5.05 0.00 0.00 3.02
688 901 0.394488 TTCGAGAGACTGAGCCGGAT 60.394 55.000 5.05 0.00 41.84 4.18
702 916 7.515643 ACCGTAATTTTATGAACAACTTCGAG 58.484 34.615 0.00 0.00 0.00 4.04
712 926 9.995957 CACACATTCATACCGTAATTTTATGAA 57.004 29.630 5.89 5.89 43.14 2.57
719 933 7.174253 ACAAACTCACACATTCATACCGTAATT 59.826 33.333 0.00 0.00 0.00 1.40
720 934 6.653320 ACAAACTCACACATTCATACCGTAAT 59.347 34.615 0.00 0.00 0.00 1.89
721 935 5.992829 ACAAACTCACACATTCATACCGTAA 59.007 36.000 0.00 0.00 0.00 3.18
731 945 6.655003 CACTTATCCCTACAAACTCACACATT 59.345 38.462 0.00 0.00 0.00 2.71
732 946 6.173339 CACTTATCCCTACAAACTCACACAT 58.827 40.000 0.00 0.00 0.00 3.21
739 953 5.163237 ACACACACACTTATCCCTACAAACT 60.163 40.000 0.00 0.00 0.00 2.66
744 958 5.974108 ACATACACACACACTTATCCCTAC 58.026 41.667 0.00 0.00 0.00 3.18
752 966 9.891828 CAAACATTTATACATACACACACACTT 57.108 29.630 0.00 0.00 0.00 3.16
758 972 7.425309 CAGACGCAAACATTTATACATACACAC 59.575 37.037 0.00 0.00 0.00 3.82
761 977 7.603963 ACAGACGCAAACATTTATACATACA 57.396 32.000 0.00 0.00 0.00 2.29
770 986 3.496884 ACACGATACAGACGCAAACATTT 59.503 39.130 0.00 0.00 0.00 2.32
775 991 2.745102 TCAACACGATACAGACGCAAA 58.255 42.857 0.00 0.00 0.00 3.68
783 999 8.237949 TGTTTCTTTCTTTTTCAACACGATACA 58.762 29.630 0.00 0.00 0.00 2.29
784 1000 8.609478 TGTTTCTTTCTTTTTCAACACGATAC 57.391 30.769 0.00 0.00 0.00 2.24
787 1003 7.087639 ACATGTTTCTTTCTTTTTCAACACGA 58.912 30.769 0.00 0.00 0.00 4.35
788 1004 7.276953 ACATGTTTCTTTCTTTTTCAACACG 57.723 32.000 0.00 0.00 0.00 4.49
798 1014 7.069569 CGTGACGATAAACATGTTTCTTTCTT 58.930 34.615 26.46 15.13 34.23 2.52
799 1015 6.590357 CGTGACGATAAACATGTTTCTTTCT 58.410 36.000 26.46 5.25 34.23 2.52
854 1070 5.505780 CCTCCTCTCTTCTTCTCTCTGTAA 58.494 45.833 0.00 0.00 0.00 2.41
855 1071 4.080015 CCCTCCTCTCTTCTTCTCTCTGTA 60.080 50.000 0.00 0.00 0.00 2.74
856 1072 3.309121 CCCTCCTCTCTTCTTCTCTCTGT 60.309 52.174 0.00 0.00 0.00 3.41
857 1073 3.290710 CCCTCCTCTCTTCTTCTCTCTG 58.709 54.545 0.00 0.00 0.00 3.35
858 1074 2.358195 GCCCTCCTCTCTTCTTCTCTCT 60.358 54.545 0.00 0.00 0.00 3.10
859 1075 2.031870 GCCCTCCTCTCTTCTTCTCTC 58.968 57.143 0.00 0.00 0.00 3.20
860 1076 1.645919 AGCCCTCCTCTCTTCTTCTCT 59.354 52.381 0.00 0.00 0.00 3.10
861 1077 1.756538 CAGCCCTCCTCTCTTCTTCTC 59.243 57.143 0.00 0.00 0.00 2.87
862 1078 1.622173 CCAGCCCTCCTCTCTTCTTCT 60.622 57.143 0.00 0.00 0.00 2.85
863 1079 0.829990 CCAGCCCTCCTCTCTTCTTC 59.170 60.000 0.00 0.00 0.00 2.87
864 1080 1.271127 GCCAGCCCTCCTCTCTTCTT 61.271 60.000 0.00 0.00 0.00 2.52
881 1097 5.362430 TCTTTCTCTCTCTCCTGATTTAGCC 59.638 44.000 0.00 0.00 0.00 3.93
882 1098 6.463995 TCTTTCTCTCTCTCCTGATTTAGC 57.536 41.667 0.00 0.00 0.00 3.09
883 1099 8.748412 TCTTTCTTTCTCTCTCTCCTGATTTAG 58.252 37.037 0.00 0.00 0.00 1.85
884 1100 8.657387 TCTTTCTTTCTCTCTCTCCTGATTTA 57.343 34.615 0.00 0.00 0.00 1.40
892 1108 8.720562 CCATTTCTTTCTTTCTTTCTCTCTCTC 58.279 37.037 0.00 0.00 0.00 3.20
977 1209 2.269241 GGCTCCCTTTCCAGGACG 59.731 66.667 0.00 0.00 44.19 4.79
1065 1297 1.139947 GGAGAGGAGCGGAAGAACG 59.860 63.158 0.00 0.00 0.00 3.95
1066 1298 0.458260 GAGGAGAGGAGCGGAAGAAC 59.542 60.000 0.00 0.00 0.00 3.01
1073 1305 3.591835 GAGGCGAGGAGAGGAGCG 61.592 72.222 0.00 0.00 0.00 5.03
1078 1310 3.591835 GAGGCGAGGCGAGGAGAG 61.592 72.222 0.00 0.00 0.00 3.20
1122 1354 0.033991 CTCCTCCTCCTCCTTGACGA 60.034 60.000 0.00 0.00 0.00 4.20
1124 1356 0.336737 TCCTCCTCCTCCTCCTTGAC 59.663 60.000 0.00 0.00 0.00 3.18
1125 1357 0.633921 CTCCTCCTCCTCCTCCTTGA 59.366 60.000 0.00 0.00 0.00 3.02
1127 1359 0.556380 TCCTCCTCCTCCTCCTCCTT 60.556 60.000 0.00 0.00 0.00 3.36
1128 1360 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1129 1361 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1130 1362 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
1149 1381 4.928520 CCCTCCCCATCCCCTCCC 62.929 77.778 0.00 0.00 0.00 4.30
1331 1565 5.527026 AACAAGAAATGGAGGAAGAGGAT 57.473 39.130 0.00 0.00 0.00 3.24
1334 1568 4.154918 CCGAAACAAGAAATGGAGGAAGAG 59.845 45.833 0.00 0.00 0.00 2.85
1426 1660 4.638963 GAAAACTACGCGAATGAGGAAAG 58.361 43.478 15.93 0.00 0.00 2.62
1455 1689 3.487202 CGGGCGACACAACGATGG 61.487 66.667 0.00 0.00 35.09 3.51
1460 1694 2.315386 GGAAGACGGGCGACACAAC 61.315 63.158 0.00 0.00 0.00 3.32
1517 1751 2.228822 CGCTCTAGGCACAACCAAAATT 59.771 45.455 4.43 0.00 43.14 1.82
1518 1752 1.812571 CGCTCTAGGCACAACCAAAAT 59.187 47.619 4.43 0.00 43.14 1.82
1519 1753 1.234821 CGCTCTAGGCACAACCAAAA 58.765 50.000 4.43 0.00 43.14 2.44
1522 1756 2.047274 GCGCTCTAGGCACAACCA 60.047 61.111 0.00 0.00 43.14 3.67
1523 1757 3.188786 CGCGCTCTAGGCACAACC 61.189 66.667 5.56 0.00 41.91 3.77
1524 1758 2.432628 ACGCGCTCTAGGCACAAC 60.433 61.111 5.73 0.00 41.91 3.32
1526 1760 4.476410 CGACGCGCTCTAGGCACA 62.476 66.667 5.73 0.00 41.91 4.57
1573 1811 6.702723 GCAATGGCATAAGAAATCTGCAAATA 59.297 34.615 0.00 0.00 40.72 1.40
1606 1845 1.990327 ACCTACCCCAAAAATCTCCGT 59.010 47.619 0.00 0.00 0.00 4.69
1645 1884 3.075582 AGGCTTGGATCCATGAATAGCAT 59.924 43.478 28.21 22.25 37.85 3.79
1650 1889 3.028850 CACAAGGCTTGGATCCATGAAT 58.971 45.455 29.26 13.82 34.12 2.57
1667 1907 6.127925 GCATCTATCAACTGTTCCATTCACAA 60.128 38.462 0.00 0.00 0.00 3.33
1710 1951 5.763204 TCAAAGAGACAACAACCACTAATCC 59.237 40.000 0.00 0.00 0.00 3.01
1758 2291 0.461961 CCTCCTTCTCGCCTACCAAG 59.538 60.000 0.00 0.00 0.00 3.61
1797 2534 5.244402 TCAAAGATGCAACATGAACTGGATT 59.756 36.000 0.00 0.00 0.00 3.01
2021 2764 7.546358 ACTTCATCAAGAAAACAATGTGTCAA 58.454 30.769 0.00 0.00 35.40 3.18
2023 2766 9.173939 CTTACTTCATCAAGAAAACAATGTGTC 57.826 33.333 0.00 0.00 35.40 3.67
2085 2830 2.904664 GGCAAAGTGGCAAGAAAGC 58.095 52.632 0.00 0.00 43.14 3.51
2217 2962 3.852471 TGCATAACTATAAAGCGTGCG 57.148 42.857 0.00 0.00 33.04 5.34
2228 2973 3.245048 CGACGATGTGCATTGCATAACTA 59.755 43.478 15.49 0.16 41.91 2.24
2244 2989 2.502213 TGGAATCATAACGCGACGAT 57.498 45.000 15.93 5.77 0.00 3.73
2245 2990 2.502213 ATGGAATCATAACGCGACGA 57.498 45.000 15.93 3.21 0.00 4.20
2246 2991 2.891391 CAATGGAATCATAACGCGACG 58.109 47.619 15.93 0.00 32.44 5.12
2312 3059 1.621107 GCAGCACAATCAATTGGACG 58.379 50.000 5.42 0.00 41.96 4.79
2339 3086 2.287584 ACTGAGGGGGAAAATCCATCA 58.712 47.619 0.00 0.00 41.95 3.07
2562 3312 0.251033 AGCATGAAGAAGCACCAGCA 60.251 50.000 0.00 0.00 45.49 4.41
2592 3342 3.056607 CCAGCGGTTTTCCAATCATCTTT 60.057 43.478 0.00 0.00 40.70 2.52
2596 3346 1.545582 CACCAGCGGTTTTCCAATCAT 59.454 47.619 0.00 0.00 40.70 2.45
2687 3438 6.692486 ACACAGTGTTGAAATAAAACCACAA 58.308 32.000 0.00 0.00 0.00 3.33
2809 3560 5.954150 AGACAAATCACCCATTTTCAGCTAT 59.046 36.000 0.00 0.00 31.79 2.97
2846 3597 3.243201 ACAGCTTTTCTCTTCTTTTGGCG 60.243 43.478 0.00 0.00 0.00 5.69
2915 3666 2.857592 GCGATGCCAAGTTGATGAAT 57.142 45.000 3.87 0.00 0.00 2.57
3038 3790 2.039480 AGGGCAGTATATGGACATGCAG 59.961 50.000 0.00 0.00 38.63 4.41
3067 3819 7.227512 GGATTGAAGTTAGCACTAGCATTGTAT 59.772 37.037 0.00 0.00 45.49 2.29
3075 3827 4.872691 CAGTGGGATTGAAGTTAGCACTAG 59.127 45.833 0.00 0.00 30.68 2.57
3077 3829 3.679389 CAGTGGGATTGAAGTTAGCACT 58.321 45.455 0.00 0.00 33.11 4.40
3184 3936 0.097674 CGCCGATCAAGAAAAGCAGG 59.902 55.000 0.00 0.00 0.00 4.85
3190 3942 0.320374 AGACCACGCCGATCAAGAAA 59.680 50.000 0.00 0.00 0.00 2.52
3391 4143 1.370051 TCGTCGTGTGAACTCGCAG 60.370 57.895 0.26 0.00 37.00 5.18
3475 4227 2.333926 TGAAATAGTGTTCTCGTGGCG 58.666 47.619 0.00 0.00 0.00 5.69
3590 4344 2.927618 CTGACGAACGGCACACACG 61.928 63.158 0.00 0.00 37.36 4.49
3611 4365 4.211164 TCCATCTAAATAAACAGCATCGCG 59.789 41.667 0.00 0.00 0.00 5.87
3724 4478 0.107848 ACATAAGAAGGGGAACGGCG 60.108 55.000 4.80 4.80 0.00 6.46
3748 4502 4.321974 GGGGAAAGGTACAGCAAAATCAAG 60.322 45.833 0.00 0.00 0.00 3.02
3757 4511 3.279434 CACATAAGGGGAAAGGTACAGC 58.721 50.000 0.00 0.00 0.00 4.40
3758 4512 4.569719 ACACATAAGGGGAAAGGTACAG 57.430 45.455 0.00 0.00 0.00 2.74
3760 4514 4.163649 AGCTACACATAAGGGGAAAGGTAC 59.836 45.833 0.00 0.00 0.00 3.34
3762 4516 3.054361 CAGCTACACATAAGGGGAAAGGT 60.054 47.826 0.00 0.00 0.00 3.50
3764 4518 3.199946 TCCAGCTACACATAAGGGGAAAG 59.800 47.826 0.00 0.00 0.00 2.62
3769 4523 5.888161 AGAAAAATCCAGCTACACATAAGGG 59.112 40.000 0.00 0.00 0.00 3.95
3784 4538 1.037579 CCCCGGGCTCAGAAAAATCC 61.038 60.000 17.73 0.00 0.00 3.01
3799 4553 5.433526 TGAGATATAAAAACCTGAACCCCG 58.566 41.667 0.00 0.00 0.00 5.73
3800 4554 5.299531 GCTGAGATATAAAAACCTGAACCCC 59.700 44.000 0.00 0.00 0.00 4.95
3803 4557 5.007724 CCGGCTGAGATATAAAAACCTGAAC 59.992 44.000 0.00 0.00 0.00 3.18
3809 4567 6.431198 TTGAACCGGCTGAGATATAAAAAC 57.569 37.500 0.00 0.00 0.00 2.43
3815 4573 3.805108 GCAGATTGAACCGGCTGAGATAT 60.805 47.826 0.00 0.00 0.00 1.63
3821 4579 0.169672 CAAGCAGATTGAACCGGCTG 59.830 55.000 0.00 0.00 41.83 4.85
3825 4583 0.169672 CAGGCAAGCAGATTGAACCG 59.830 55.000 1.54 0.00 41.83 4.44
3826 4584 1.200948 GACAGGCAAGCAGATTGAACC 59.799 52.381 1.54 0.00 41.83 3.62
3850 4614 6.159299 AGATCATGAGTACTGATGGTCAAG 57.841 41.667 29.67 7.26 32.90 3.02
3859 4623 4.572389 CCCCGAAAAAGATCATGAGTACTG 59.428 45.833 0.00 0.00 0.00 2.74
3864 4668 4.458989 TGTTTCCCCGAAAAAGATCATGAG 59.541 41.667 0.09 0.00 33.14 2.90
3879 4683 2.807676 AGTTCATCATGGTGTTTCCCC 58.192 47.619 5.73 0.00 34.77 4.81
3930 4739 4.168101 ACTTGACACTATCCCTTTCAGGA 58.832 43.478 0.00 0.00 37.67 3.86
3936 4745 4.407365 CCCAAAACTTGACACTATCCCTT 58.593 43.478 0.00 0.00 0.00 3.95
3937 4746 3.814316 GCCCAAAACTTGACACTATCCCT 60.814 47.826 0.00 0.00 0.00 4.20
3938 4747 2.492088 GCCCAAAACTTGACACTATCCC 59.508 50.000 0.00 0.00 0.00 3.85
3951 4760 5.574891 AAGAAAACAATTTGGCCCAAAAC 57.425 34.783 13.87 0.00 36.90 2.43
3956 4765 5.243954 ACTCTCTAAGAAAACAATTTGGCCC 59.756 40.000 0.00 0.00 0.00 5.80
3957 4766 6.332735 ACTCTCTAAGAAAACAATTTGGCC 57.667 37.500 0.00 0.00 0.00 5.36
3958 4767 8.100508 ACTACTCTCTAAGAAAACAATTTGGC 57.899 34.615 0.78 0.00 0.00 4.52
3966 4775 9.327628 ACCTGAAAAACTACTCTCTAAGAAAAC 57.672 33.333 0.00 0.00 0.00 2.43
3985 4794 9.362151 ACACTATCCTGAAAAATTTACCTGAAA 57.638 29.630 0.00 0.00 0.00 2.69
3986 4795 8.934023 ACACTATCCTGAAAAATTTACCTGAA 57.066 30.769 0.00 0.00 0.00 3.02
3987 4796 8.160765 TGACACTATCCTGAAAAATTTACCTGA 58.839 33.333 0.00 0.00 0.00 3.86
3988 4797 8.335532 TGACACTATCCTGAAAAATTTACCTG 57.664 34.615 0.00 0.00 0.00 4.00
3989 4798 8.934023 TTGACACTATCCTGAAAAATTTACCT 57.066 30.769 0.00 0.00 0.00 3.08
3990 4799 8.793592 ACTTGACACTATCCTGAAAAATTTACC 58.206 33.333 0.00 0.00 0.00 2.85
3994 4803 9.533253 CAAAACTTGACACTATCCTGAAAAATT 57.467 29.630 0.00 0.00 0.00 1.82
3995 4804 8.143835 CCAAAACTTGACACTATCCTGAAAAAT 58.856 33.333 0.00 0.00 0.00 1.82
3996 4805 7.340743 TCCAAAACTTGACACTATCCTGAAAAA 59.659 33.333 0.00 0.00 0.00 1.94
3997 4806 6.831353 TCCAAAACTTGACACTATCCTGAAAA 59.169 34.615 0.00 0.00 0.00 2.29
3998 4807 6.262273 GTCCAAAACTTGACACTATCCTGAAA 59.738 38.462 0.00 0.00 0.00 2.69
3999 4808 5.763204 GTCCAAAACTTGACACTATCCTGAA 59.237 40.000 0.00 0.00 0.00 3.02
4000 4809 5.305585 GTCCAAAACTTGACACTATCCTGA 58.694 41.667 0.00 0.00 0.00 3.86
4001 4810 4.455877 GGTCCAAAACTTGACACTATCCTG 59.544 45.833 0.00 0.00 0.00 3.86
4002 4811 4.104102 TGGTCCAAAACTTGACACTATCCT 59.896 41.667 0.00 0.00 0.00 3.24
4003 4812 4.394729 TGGTCCAAAACTTGACACTATCC 58.605 43.478 0.00 0.00 0.00 2.59
4004 4813 5.562890 GCTTGGTCCAAAACTTGACACTATC 60.563 44.000 5.64 0.00 0.00 2.08
4005 4814 4.278419 GCTTGGTCCAAAACTTGACACTAT 59.722 41.667 5.64 0.00 0.00 2.12
4026 4835 3.996480 ACGCTTCTCTAAGAAAACAGCT 58.004 40.909 0.00 0.00 33.19 4.24
4027 4836 4.733972 AACGCTTCTCTAAGAAAACAGC 57.266 40.909 0.00 0.00 33.19 4.40
4028 4837 6.715464 TGAAAACGCTTCTCTAAGAAAACAG 58.285 36.000 0.19 0.00 33.19 3.16
4029 4838 6.238374 CCTGAAAACGCTTCTCTAAGAAAACA 60.238 38.462 0.19 0.00 33.19 2.83
4030 4839 6.136743 CCTGAAAACGCTTCTCTAAGAAAAC 58.863 40.000 0.19 0.00 33.19 2.43
4045 4880 6.217294 TGCCCTAAAATTTTACCTGAAAACG 58.783 36.000 6.54 0.00 39.83 3.60
4056 4891 7.978099 AAGACCATATCTGCCCTAAAATTTT 57.022 32.000 8.75 8.75 37.88 1.82
4059 4894 6.897413 ACAAAAGACCATATCTGCCCTAAAAT 59.103 34.615 0.00 0.00 37.88 1.82
4086 4921 6.601332 ACTGACCTTAGTTGATCCTCAAAAA 58.399 36.000 0.00 0.00 38.22 1.94
4087 4922 6.187727 ACTGACCTTAGTTGATCCTCAAAA 57.812 37.500 0.00 0.00 38.22 2.44
4088 4923 5.825593 ACTGACCTTAGTTGATCCTCAAA 57.174 39.130 0.00 0.00 38.22 2.69
4089 4924 5.825593 AACTGACCTTAGTTGATCCTCAA 57.174 39.130 0.00 0.00 39.33 3.02
4090 4925 5.825593 AAACTGACCTTAGTTGATCCTCA 57.174 39.130 0.00 0.00 40.58 3.86
4168 5016 6.017852 CCGTCTTAAATTCTTATCTGGGCTTC 60.018 42.308 0.00 0.00 0.00 3.86
4181 5029 4.379499 CCAGTCAAAGCCCGTCTTAAATTC 60.379 45.833 0.00 0.00 33.88 2.17
4183 5031 3.081804 CCAGTCAAAGCCCGTCTTAAAT 58.918 45.455 0.00 0.00 33.88 1.40
4295 5194 3.455469 GAAGGCCCAGCATGTGCC 61.455 66.667 0.00 8.93 45.70 5.01
4373 5272 1.597937 GCGGAACACAAAACAGCAGAG 60.598 52.381 0.00 0.00 0.00 3.35
4381 5280 1.267932 CGTAAACGGCGGAACACAAAA 60.268 47.619 13.24 0.00 35.37 2.44
4394 5293 3.395671 CAAACAGAGCGATTCGTAAACG 58.604 45.455 8.03 0.00 41.45 3.60
4397 5296 2.411748 CAGCAAACAGAGCGATTCGTAA 59.588 45.455 8.03 0.00 37.01 3.18
4401 5300 0.801251 AGCAGCAAACAGAGCGATTC 59.199 50.000 0.00 0.00 37.01 2.52
4444 5357 0.451783 CCTTGGATTTTTCTCGCGGG 59.548 55.000 6.13 1.01 0.00 6.13
4466 5379 0.534203 AAGCAACGTGTACCTGGTGG 60.534 55.000 10.23 0.00 39.83 4.61
4467 5380 0.865769 GAAGCAACGTGTACCTGGTG 59.134 55.000 10.23 0.00 0.00 4.17
4468 5381 0.599204 CGAAGCAACGTGTACCTGGT 60.599 55.000 4.05 4.05 0.00 4.00
4499 5418 3.128848 TCTACTCCTCCTGCCTAGGTTA 58.871 50.000 11.31 0.00 44.88 2.85
4508 5427 2.243810 GCCCTACATCTACTCCTCCTG 58.756 57.143 0.00 0.00 0.00 3.86
4533 5452 7.174426 CAGATATGCAAATCAGCCATTTCTCTA 59.826 37.037 0.00 0.00 31.79 2.43
4546 5465 4.319622 GCACAGAGCTCAGATATGCAAATC 60.320 45.833 17.77 0.00 41.15 2.17
4547 5466 3.564644 GCACAGAGCTCAGATATGCAAAT 59.435 43.478 17.77 0.00 41.15 2.32
4548 5467 2.941064 GCACAGAGCTCAGATATGCAAA 59.059 45.455 17.77 0.00 41.15 3.68
4550 5469 2.235845 GCACAGAGCTCAGATATGCA 57.764 50.000 17.77 0.00 41.15 3.96
4578 5497 0.037697 CCGATCTTCCCAACGACACA 60.038 55.000 0.00 0.00 0.00 3.72
4610 5529 1.276622 ATTCCACACTAACCGAGGCT 58.723 50.000 0.00 0.00 0.00 4.58
4612 5531 6.373216 TCATTAAAATTCCACACTAACCGAGG 59.627 38.462 0.00 0.00 0.00 4.63
4617 5536 7.158099 AGCCTCATTAAAATTCCACACTAAC 57.842 36.000 0.00 0.00 0.00 2.34
4644 5563 0.660488 ACAGATTCGCGTTTTGCACA 59.340 45.000 5.77 0.00 46.97 4.57
4648 5567 4.383774 TGAACTACAGATTCGCGTTTTG 57.616 40.909 5.77 3.34 0.00 2.44
4661 5580 9.839817 TCGAAATATATTTTCCCATGAACTACA 57.160 29.630 11.92 0.00 0.00 2.74
4680 5599 7.737972 TCTCAACCAGAAAACAATCGAAATA 57.262 32.000 0.00 0.00 0.00 1.40
4681 5600 6.633500 TCTCAACCAGAAAACAATCGAAAT 57.367 33.333 0.00 0.00 0.00 2.17
4682 5601 6.633500 ATCTCAACCAGAAAACAATCGAAA 57.367 33.333 0.00 0.00 33.62 3.46
4683 5602 6.039270 ACAATCTCAACCAGAAAACAATCGAA 59.961 34.615 0.00 0.00 33.62 3.71
4684 5603 5.530915 ACAATCTCAACCAGAAAACAATCGA 59.469 36.000 0.00 0.00 33.62 3.59
4685 5604 5.626543 CACAATCTCAACCAGAAAACAATCG 59.373 40.000 0.00 0.00 33.62 3.34
4686 5605 6.738114 TCACAATCTCAACCAGAAAACAATC 58.262 36.000 0.00 0.00 33.62 2.67
4687 5606 6.713762 TCACAATCTCAACCAGAAAACAAT 57.286 33.333 0.00 0.00 33.62 2.71
4688 5607 6.152661 ACTTCACAATCTCAACCAGAAAACAA 59.847 34.615 0.00 0.00 33.62 2.83
4689 5608 5.652014 ACTTCACAATCTCAACCAGAAAACA 59.348 36.000 0.00 0.00 33.62 2.83
4690 5609 5.973565 CACTTCACAATCTCAACCAGAAAAC 59.026 40.000 0.00 0.00 33.62 2.43
4691 5610 5.067674 CCACTTCACAATCTCAACCAGAAAA 59.932 40.000 0.00 0.00 33.62 2.29
4692 5611 4.580167 CCACTTCACAATCTCAACCAGAAA 59.420 41.667 0.00 0.00 33.62 2.52
4693 5612 4.136796 CCACTTCACAATCTCAACCAGAA 58.863 43.478 0.00 0.00 33.62 3.02
4694 5613 3.496692 CCCACTTCACAATCTCAACCAGA 60.497 47.826 0.00 0.00 34.78 3.86
4695 5614 2.816087 CCCACTTCACAATCTCAACCAG 59.184 50.000 0.00 0.00 0.00 4.00
4696 5615 2.441375 TCCCACTTCACAATCTCAACCA 59.559 45.455 0.00 0.00 0.00 3.67
4697 5616 2.814336 GTCCCACTTCACAATCTCAACC 59.186 50.000 0.00 0.00 0.00 3.77
4698 5617 3.476552 TGTCCCACTTCACAATCTCAAC 58.523 45.455 0.00 0.00 0.00 3.18
4699 5618 3.136443 ACTGTCCCACTTCACAATCTCAA 59.864 43.478 0.00 0.00 0.00 3.02
4700 5619 2.705658 ACTGTCCCACTTCACAATCTCA 59.294 45.455 0.00 0.00 0.00 3.27
4701 5620 3.409026 ACTGTCCCACTTCACAATCTC 57.591 47.619 0.00 0.00 0.00 2.75
4702 5621 3.646162 TGTACTGTCCCACTTCACAATCT 59.354 43.478 0.00 0.00 0.00 2.40
4703 5622 4.002906 TGTACTGTCCCACTTCACAATC 57.997 45.455 0.00 0.00 0.00 2.67
4704 5623 4.640771 ATGTACTGTCCCACTTCACAAT 57.359 40.909 0.00 0.00 0.00 2.71
4705 5624 4.431416 AATGTACTGTCCCACTTCACAA 57.569 40.909 0.00 0.00 0.00 3.33
4706 5625 4.431416 AAATGTACTGTCCCACTTCACA 57.569 40.909 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.