AutoCloner

Multiple sequence alignment - TraesCS2A01G446900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G446900	chr2A	100.000	3142	0	0	1	3142	695822211	695819070	0.000000e+00	5803
1	TraesCS2A01G446900	chr2A	98.294	879	14	1	2265	3142	695977928	695977050	0.000000e+00	1539
2	TraesCS2A01G446900	chr2A	95.431	766	6	2	1418	2183	695978663	695977927	0.000000e+00	1194
3	TraesCS2A01G446900	chr2A	91.403	663	12	11	1	641	695979303	695978664	0.000000e+00	867
4	TraesCS2A01G446900	chr2A	84.116	447	59	7	3	442	695993853	695993412	3.750000e-114	422
5	TraesCS2A01G446900	chr2A	82.899	345	48	9	1763	2105	695521750	695521415	1.830000e-77	300
6	TraesCS2A01G446900	chr2B	88.119	1717	115	37	1	1662	663330988	663332670	0.000000e+00	1958
7	TraesCS2A01G446900	chr2B	94.808	809	27	6	2265	3073	663333160	663333953	0.000000e+00	1247
8	TraesCS2A01G446900	chr2B	96.620	503	15	2	1683	2183	663332659	663333161	0.000000e+00	833
9	TraesCS2A01G446900	chr2B	81.833	633	76	19	43	644	663788458	663787834	2.180000e-136	496
10	TraesCS2A01G446900	chr2B	95.440	307	14	0	2549	2855	601732869	601732563	1.010000e-134	490
11	TraesCS2A01G446900	chr2B	96.032	126	4	1	2905	3029	601732108	601731983	1.480000e-48	204
12	TraesCS2A01G446900	chr2B	87.075	147	19	0	1763	1909	663140002	663139856	1.940000e-37	167
13	TraesCS2A01G446900	chr2B	93.478	92	6	0	3051	3142	664372199	664372108	1.520000e-28	137
14	TraesCS2A01G446900	chr2B	94.318	88	5	0	3055	3142	594338098	594338185	5.470000e-28	135
15	TraesCS2A01G446900	chr2D	90.468	1238	65	22	444	1660	556225886	556224681	0.000000e+00	1583
16	TraesCS2A01G446900	chr2D	95.424	896	23	1	2265	3142	556224190	556223295	0.000000e+00	1411
17	TraesCS2A01G446900	chr2D	97.211	502	13	1	1683	2183	556224690	556224189	0.000000e+00	848
18	TraesCS2A01G446900	chr2D	85.853	516	24	18	2549	3064	564469795	564469329	1.300000e-138	503
19	TraesCS2A01G446900	chr2D	86.607	448	47	10	2	442	556228181	556227740	1.690000e-132	483
20	TraesCS2A01G446900	chr2D	83.565	359	47	7	1703	2056	556070518	556070167	3.020000e-85	326
21	TraesCS2A01G446900	chr3D	91.860	516	17	2	2549	3064	482835833	482836323	0.000000e+00	697
22	TraesCS2A01G446900	chr6A	91.085	516	22	1	2549	3064	561589526	561590017	0.000000e+00	676
23	TraesCS2A01G446900	chr6A	90.891	516	23	1	2549	3064	561451112	561450621	0.000000e+00	671
24	TraesCS2A01G446900	chr6A	90.116	516	27	5	2549	3064	561602783	561603274	0.000000e+00	649
25	TraesCS2A01G446900	chr6A	97.701	87	2	0	2182	2268	287115365	287115451	1.950000e-32	150
26	TraesCS2A01G446900	chr4A	88.719	523	40	10	2549	3064	30777241	30776731	3.440000e-174	621
27	TraesCS2A01G446900	chr5A	95.789	95	4	0	2181	2275	705822061	705821967	1.510000e-33	154
28	TraesCS2A01G446900	chr5A	92.157	102	7	1	2173	2274	635413965	635414065	3.270000e-30	143
29	TraesCS2A01G446900	chr1A	94.118	102	3	2	2182	2283	373317667	373317569	5.430000e-33	152
30	TraesCS2A01G446900	chr3A	97.701	87	2	0	2181	2267	707127204	707127118	1.950000e-32	150
31	TraesCS2A01G446900	chr7D	93.814	97	6	0	2181	2277	53485587	53485491	2.530000e-31	147
32	TraesCS2A01G446900	chr7D	98.750	80	1	0	3063	3142	309025285	309025206	3.270000e-30	143
33	TraesCS2A01G446900	chr1B	93.814	97	6	0	2173	2269	110607249	110607345	2.530000e-31	147
34	TraesCS2A01G446900	chr1B	95.294	85	4	0	3058	3142	225789127	225789043	5.470000e-28	135
35	TraesCS2A01G446900	chr1B	93.407	91	4	2	3052	3142	187206323	187206411	1.970000e-27	134
36	TraesCS2A01G446900	chr1B	91.753	97	7	1	3047	3142	641616881	641616977	1.970000e-27	134
37	TraesCS2A01G446900	chr7B	93.750	96	6	0	3047	3142	176699702	176699607	9.080000e-31	145
38	TraesCS2A01G446900	chr7A	95.604	91	3	1	2179	2268	301100512	301100422	9.080000e-31	145
39	TraesCS2A01G446900	chr1D	88.430	121	11	3	2153	2270	124331874	124331994	3.270000e-30	143
40	TraesCS2A01G446900	chr4B	94.318	88	5	0	3055	3142	510828292	510828205	5.470000e-28	135

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G446900	chr2A	695819070	695822211	3141	True	5803.00	5803	100.000000	1	3142	1	chr2A.!!$R2	3141
1	TraesCS2A01G446900	chr2A	695977050	695979303	2253	True	1200.00	1539	95.042667	1	3142	3	chr2A.!!$R4	3141
2	TraesCS2A01G446900	chr2B	663330988	663333953	2965	False	1346.00	1958	93.182333	1	3073	3	chr2B.!!$F2	3072
3	TraesCS2A01G446900	chr2B	663787834	663788458	624	True	496.00	496	81.833000	43	644	1	chr2B.!!$R2	601
4	TraesCS2A01G446900	chr2B	601731983	601732869	886	True	347.00	490	95.736000	2549	3029	2	chr2B.!!$R4	480
5	TraesCS2A01G446900	chr2D	556223295	556228181	4886	True	1081.25	1583	92.427500	2	3142	4	chr2D.!!$R3	3140
6	TraesCS2A01G446900	chr4A	30776731	30777241	510	True	621.00	621	88.719000	2549	3064	1	chr4A.!!$R1	515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
476	2339	0.547471	TGGCTCCATCTTCCTCACCA	60.547	55.0	0.0	0.00	0.00	4.17	F
1008	2915	0.521867	CGCAATCAGACATGTTGGCG	60.522	55.0	0.0	0.38	35.25	5.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1360	3274	0.104120	TGGAGTTCAGTGTGTGACGG	59.896	55.000	0.0	0.0	33.71	4.79	R
2891	5245	1.925255	TGATTTGAAGGGCCATCTCCT	59.075	47.619	10.5	0.0	35.88	3.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
476	2339	0.547471	TGGCTCCATCTTCCTCACCA	60.547	55.000	0.00	0.00	0.00	4.17
680	2569	2.270986	GGCAGGCCCTCAAACACTG	61.271	63.158	0.00	0.00	0.00	3.66
692	2581	4.242475	CTCAAACACTGTATCGCCTTACA	58.758	43.478	0.00	0.00	0.00	2.41
709	2598	5.241728	GCCTTACACTTGGTTCAAATCTCTT	59.758	40.000	0.00	0.00	0.00	2.85
764	2656	5.723678	GCGGCGAATCAACCAAATATTTTTG	60.724	40.000	12.98	2.28	41.59	2.44
804	2697	1.748122	AGCCTGCACAGCATAGCAC	60.748	57.895	14.06	0.00	39.25	4.40
937	2842	1.068333	AGTGACGCACAAATGATTGGC	60.068	47.619	11.58	0.00	41.01	4.52
947	2852	5.047847	CACAAATGATTGGCTTCCATGATC	58.952	41.667	0.00	0.00	41.01	2.92
1008	2915	0.521867	CGCAATCAGACATGTTGGCG	60.522	55.000	0.00	0.38	35.25	5.69
1025	2932	1.398390	GGCGAGAACCAAGTGCTTATG	59.602	52.381	0.00	0.00	0.00	1.90
1052	2960	8.940397	AGGAATCAGTTCTCCAAAATAAGAAA	57.060	30.769	0.00	0.00	33.53	2.52
1099	3008	1.227823	CGCTTTGTCCACTGGTCCA	60.228	57.895	0.00	0.00	0.00	4.02
1116	3025	1.375013	CAGGCAGGCCAAAATGCAC	60.375	57.895	15.79	6.15	44.37	4.57
1127	3041	6.919662	CAGGCCAAAATGCACAATATAGTAAG	59.080	38.462	5.01	0.00	0.00	2.34
1137	3051	4.757149	CACAATATAGTAAGCTTCAGGCCC	59.243	45.833	0.00	0.00	43.05	5.80
1230	3144	2.424956	CAGGATAACTCCAGCCAAAAGC	59.575	50.000	0.00	0.00	44.79	3.51
1377	3291	1.209128	CACCGTCACACACTGAACTC	58.791	55.000	0.00	0.00	0.00	3.01
1379	3293	0.104120	CCGTCACACACTGAACTCCA	59.896	55.000	0.00	0.00	0.00	3.86
1409	3329	1.416401	TGGTTGACAGACACTTCCCTC	59.584	52.381	0.00	0.00	0.00	4.30
1410	3330	1.605712	GGTTGACAGACACTTCCCTCG	60.606	57.143	0.00	0.00	0.00	4.63
1412	3332	0.959553	TGACAGACACTTCCCTCGTC	59.040	55.000	0.00	0.00	0.00	4.20
1413	3333	0.959553	GACAGACACTTCCCTCGTCA	59.040	55.000	0.00	0.00	31.92	4.35
1414	3334	0.674534	ACAGACACTTCCCTCGTCAC	59.325	55.000	0.00	0.00	31.92	3.67
1415	3335	0.673985	CAGACACTTCCCTCGTCACA	59.326	55.000	0.00	0.00	31.92	3.58
1546	3466	2.964310	GCTGCCAGAGCTTCTCCCA	61.964	63.158	0.00	0.00	45.21	4.37
1714	3635	0.933097	CATGTGCATACTGACCGAGC	59.067	55.000	0.00	0.00	0.00	5.03
2188	4111	9.270707	TGATCATATGAATATCACATACTCCCA	57.729	33.333	9.99	0.00	33.89	4.37
2189	4112	9.539825	GATCATATGAATATCACATACTCCCAC	57.460	37.037	9.99	0.00	33.89	4.61
2190	4113	7.851228	TCATATGAATATCACATACTCCCACC	58.149	38.462	1.98	0.00	33.89	4.61
2191	4114	4.600692	TGAATATCACATACTCCCACCG	57.399	45.455	0.00	0.00	0.00	4.94
2192	4115	3.964688	TGAATATCACATACTCCCACCGT	59.035	43.478	0.00	0.00	0.00	4.83
2193	4116	5.141910	TGAATATCACATACTCCCACCGTA	58.858	41.667	0.00	0.00	0.00	4.02
2194	4117	5.599242	TGAATATCACATACTCCCACCGTAA	59.401	40.000	0.00	0.00	0.00	3.18
2195	4118	6.098552	TGAATATCACATACTCCCACCGTAAA	59.901	38.462	0.00	0.00	0.00	2.01
2196	4119	3.598019	TCACATACTCCCACCGTAAAC	57.402	47.619	0.00	0.00	0.00	2.01
2197	4120	3.167485	TCACATACTCCCACCGTAAACT	58.833	45.455	0.00	0.00	0.00	2.66
2198	4121	4.343231	TCACATACTCCCACCGTAAACTA	58.657	43.478	0.00	0.00	0.00	2.24
2199	4122	4.771577	TCACATACTCCCACCGTAAACTAA	59.228	41.667	0.00	0.00	0.00	2.24
2200	4123	5.422970	TCACATACTCCCACCGTAAACTAAT	59.577	40.000	0.00	0.00	0.00	1.73
2201	4124	6.606796	TCACATACTCCCACCGTAAACTAATA	59.393	38.462	0.00	0.00	0.00	0.98
2202	4125	7.288389	TCACATACTCCCACCGTAAACTAATAT	59.712	37.037	0.00	0.00	0.00	1.28
2203	4126	8.579006	CACATACTCCCACCGTAAACTAATATA	58.421	37.037	0.00	0.00	0.00	0.86
2204	4127	9.146586	ACATACTCCCACCGTAAACTAATATAA	57.853	33.333	0.00	0.00	0.00	0.98
2205	4128	9.635520	CATACTCCCACCGTAAACTAATATAAG	57.364	37.037	0.00	0.00	0.00	1.73
2206	4129	7.902920	ACTCCCACCGTAAACTAATATAAGA	57.097	36.000	0.00	0.00	0.00	2.10
2207	4130	7.949434	ACTCCCACCGTAAACTAATATAAGAG	58.051	38.462	0.00	0.00	0.00	2.85
2208	4131	6.752168	TCCCACCGTAAACTAATATAAGAGC	58.248	40.000	0.00	0.00	0.00	4.09
2209	4132	5.632347	CCCACCGTAAACTAATATAAGAGCG	59.368	44.000	0.00	0.00	0.00	5.03
2210	4133	5.118203	CCACCGTAAACTAATATAAGAGCGC	59.882	44.000	0.00	0.00	0.00	5.92
2211	4134	5.919141	CACCGTAAACTAATATAAGAGCGCT	59.081	40.000	11.27	11.27	0.00	5.92
2212	4135	6.420008	CACCGTAAACTAATATAAGAGCGCTT	59.580	38.462	13.26	8.09	38.15	4.68
2213	4136	7.592533	CACCGTAAACTAATATAAGAGCGCTTA	59.407	37.037	13.26	12.50	40.65	3.09
2214	4137	7.806960	ACCGTAAACTAATATAAGAGCGCTTAG	59.193	37.037	13.26	10.09	39.79	2.18
2215	4138	8.019669	CCGTAAACTAATATAAGAGCGCTTAGA	58.980	37.037	13.26	11.33	39.79	2.10
2216	4139	9.557338	CGTAAACTAATATAAGAGCGCTTAGAT	57.443	33.333	13.26	13.13	39.53	1.98
2229	4152	8.804688	AGAGCGCTTAGATTACTATTTTAGTG	57.195	34.615	13.26	0.00	39.81	2.74
2230	4153	8.630917	AGAGCGCTTAGATTACTATTTTAGTGA	58.369	33.333	13.26	0.00	39.81	3.41
2231	4154	9.413048	GAGCGCTTAGATTACTATTTTAGTGAT	57.587	33.333	13.26	0.00	39.81	3.06
2232	4155	9.413048	AGCGCTTAGATTACTATTTTAGTGATC	57.587	33.333	2.64	10.03	46.38	2.92
2262	4185	9.710818	ACACTCTTATATTAGTTTACAGAGGGA	57.289	33.333	2.59	0.00	34.50	4.20
2264	4187	9.939424	ACTCTTATATTAGTTTACAGAGGGAGT	57.061	33.333	0.00	0.00	32.21	3.85
2766	4691	0.545309	TACCCTCCTGCTTCTGCTGT	60.545	55.000	0.00	0.00	40.48	4.40
2789	4714	6.864685	TGTAAGTAAAGGAGAACATACACACG	59.135	38.462	0.00	0.00	28.09	4.49
2865	5219	6.716628	TCCACCTCCTATTAAATGATGAATGC	59.283	38.462	0.00	0.00	0.00	3.56
2891	5245	4.422073	ACTCATGAACAGAAGACCACAA	57.578	40.909	0.00	0.00	0.00	3.33
2946	5300	1.001746	CCCCATCGACATGATCTCCAG	59.998	57.143	0.00	0.00	34.13	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
86	87	8.280909	ACATGATTTACAAAATGTCAACGTTC	57.719	30.769	0.00	0.00	0.00	3.95
166	174	9.693157	GAAAGACATGAACATTTTTCAAAACTG	57.307	29.630	0.00	0.00	31.55	3.16
178	186	8.721019	ACAATTTGTTTGAAAGACATGAACAT	57.279	26.923	0.00	0.00	38.76	2.71
476	2339	3.958147	CTTGATGGTGGCGACGGCT	62.958	63.158	22.70	1.18	39.81	5.52
509	2372	1.738099	CGCTAGCGTGCCTTTCACT	60.738	57.895	28.66	0.00	43.46	3.41
519	2382	1.141881	CTCCATTCACCGCTAGCGT	59.858	57.895	33.18	19.63	37.81	5.07
680	2569	3.592059	TGAACCAAGTGTAAGGCGATAC	58.408	45.455	0.00	0.00	0.00	2.24
692	2581	8.924511	TGATTCTTAAGAGATTTGAACCAAGT	57.075	30.769	5.12	0.00	0.00	3.16
709	2598	6.780031	TCTGGGGTGTTTTTCATTGATTCTTA	59.220	34.615	0.00	0.00	0.00	2.10
804	2697	4.671377	TTACTAAATGTAGCACGGTACGG	58.329	43.478	0.00	0.00	44.57	4.02
937	2842	2.490509	TGCTGCTTTGTGATCATGGAAG	59.509	45.455	0.00	5.09	0.00	3.46
947	2852	4.146961	CGATTTGTTTACTGCTGCTTTGTG	59.853	41.667	0.00	0.00	0.00	3.33
1008	2915	3.055094	TCCTCCATAAGCACTTGGTTCTC	60.055	47.826	0.00	0.00	37.00	2.87
1025	2932	7.112779	TCTTATTTTGGAGAACTGATTCCTCC	58.887	38.462	0.00	0.00	35.18	4.30
1052	2960	4.685513	TCCTGTAAGCCCCCTTTATTTT	57.314	40.909	0.00	0.00	32.47	1.82
1056	2964	2.844348	CTCTTCCTGTAAGCCCCCTTTA	59.156	50.000	0.00	0.00	34.97	1.85
1060	2968	1.286248	TTCTCTTCCTGTAAGCCCCC	58.714	55.000	0.00	0.00	34.97	5.40
1099	3008	1.409251	TTGTGCATTTTGGCCTGCCT	61.409	50.000	11.81	0.00	37.59	4.75
1116	3025	3.997021	CGGGCCTGAAGCTTACTATATTG	59.003	47.826	5.28	0.00	43.05	1.90
1127	3041	4.056125	GGTTTGCGGGCCTGAAGC	62.056	66.667	18.31	7.68	42.60	3.86
1137	3051	2.044888	AAGTATTTGCGTGGTTTGCG	57.955	45.000	0.00	0.00	34.24	4.85
1347	3261	2.931325	GTGTGACGGTGTTTACAACTGA	59.069	45.455	0.00	0.00	0.00	3.41
1348	3262	2.673862	TGTGTGACGGTGTTTACAACTG	59.326	45.455	0.00	0.00	0.00	3.16
1350	3264	2.674357	AGTGTGTGACGGTGTTTACAAC	59.326	45.455	0.00	0.00	0.00	3.32
1351	3265	2.673862	CAGTGTGTGACGGTGTTTACAA	59.326	45.455	0.00	0.00	0.00	2.41
1352	3266	2.094130	TCAGTGTGTGACGGTGTTTACA	60.094	45.455	0.00	0.00	0.00	2.41
1353	3267	2.542597	TCAGTGTGTGACGGTGTTTAC	58.457	47.619	0.00	0.00	0.00	2.01
1354	3268	2.931325	GTTCAGTGTGTGACGGTGTTTA	59.069	45.455	0.00	0.00	33.71	2.01
1356	3270	1.066430	AGTTCAGTGTGTGACGGTGTT	60.066	47.619	0.00	0.00	33.71	3.32
1357	3271	0.535335	AGTTCAGTGTGTGACGGTGT	59.465	50.000	0.00	0.00	33.71	4.16
1360	3274	0.104120	TGGAGTTCAGTGTGTGACGG	59.896	55.000	0.00	0.00	33.71	4.79
1361	3275	2.061773	GATGGAGTTCAGTGTGTGACG	58.938	52.381	0.00	0.00	33.71	4.35
1362	3276	3.062763	CTGATGGAGTTCAGTGTGTGAC	58.937	50.000	0.00	0.00	38.64	3.67
1363	3277	2.548707	GCTGATGGAGTTCAGTGTGTGA	60.549	50.000	3.65	0.00	44.10	3.58
1377	3291	2.486982	CTGTCAACCAAGAAGCTGATGG	59.513	50.000	10.32	10.32	40.16	3.51
1379	3293	3.181451	TGTCTGTCAACCAAGAAGCTGAT	60.181	43.478	0.00	0.00	0.00	2.90
1387	3301	2.158755	AGGGAAGTGTCTGTCAACCAAG	60.159	50.000	0.00	0.00	0.00	3.61
1409	3329	1.794701	CTTGATGGACTGTGTGTGACG	59.205	52.381	0.00	0.00	0.00	4.35
1410	3330	2.802816	GACTTGATGGACTGTGTGTGAC	59.197	50.000	0.00	0.00	0.00	3.67
1412	3332	2.146342	GGACTTGATGGACTGTGTGTG	58.854	52.381	0.00	0.00	0.00	3.82
1413	3333	1.768275	TGGACTTGATGGACTGTGTGT	59.232	47.619	0.00	0.00	0.00	3.72
1414	3334	2.549064	TGGACTTGATGGACTGTGTG	57.451	50.000	0.00	0.00	0.00	3.82
1415	3335	2.290514	CCATGGACTTGATGGACTGTGT	60.291	50.000	5.56	0.00	42.81	3.72
1546	3466	0.108138	GTATCTTGGCGAGCACCTGT	60.108	55.000	0.00	0.00	0.00	4.00
1679	3600	3.338249	CACATGGACGACTTGAGGAATT	58.662	45.455	0.00	0.00	0.00	2.17
1680	3601	2.936993	GCACATGGACGACTTGAGGAAT	60.937	50.000	0.00	0.00	0.00	3.01
1681	3602	1.608025	GCACATGGACGACTTGAGGAA	60.608	52.381	0.00	0.00	0.00	3.36
1714	3635	0.301388	GCAAAAGCAGCAAACCGTTG	59.699	50.000	0.00	0.00	37.83	4.10
2182	4105	7.471120	GCTCTTATATTAGTTTACGGTGGGAGT	60.471	40.741	0.00	0.00	0.00	3.85
2183	4106	6.867293	GCTCTTATATTAGTTTACGGTGGGAG	59.133	42.308	0.00	0.00	0.00	4.30
2184	4107	6.515531	CGCTCTTATATTAGTTTACGGTGGGA	60.516	42.308	0.00	0.00	0.00	4.37
2185	4108	5.632347	CGCTCTTATATTAGTTTACGGTGGG	59.368	44.000	0.00	0.00	0.00	4.61
2186	4109	5.118203	GCGCTCTTATATTAGTTTACGGTGG	59.882	44.000	0.00	0.00	0.00	4.61
2187	4110	5.919141	AGCGCTCTTATATTAGTTTACGGTG	59.081	40.000	2.64	0.00	0.00	4.94
2188	4111	6.081872	AGCGCTCTTATATTAGTTTACGGT	57.918	37.500	2.64	0.00	0.00	4.83
2189	4112	8.019669	TCTAAGCGCTCTTATATTAGTTTACGG	58.980	37.037	12.06	0.00	34.54	4.02
2190	4113	8.945758	TCTAAGCGCTCTTATATTAGTTTACG	57.054	34.615	12.06	0.00	34.54	3.18
2203	4126	9.250624	CACTAAAATAGTAATCTAAGCGCTCTT	57.749	33.333	12.06	5.00	37.23	2.85
2204	4127	8.630917	TCACTAAAATAGTAATCTAAGCGCTCT	58.369	33.333	12.06	3.67	37.23	4.09
2205	4128	8.798748	TCACTAAAATAGTAATCTAAGCGCTC	57.201	34.615	12.06	0.00	37.23	5.03
2206	4129	9.413048	GATCACTAAAATAGTAATCTAAGCGCT	57.587	33.333	2.64	2.64	37.23	5.92
2207	4130	9.413048	AGATCACTAAAATAGTAATCTAAGCGC	57.587	33.333	0.00	0.00	41.03	5.92
2236	4159	9.710818	TCCCTCTGTAAACTAATATAAGAGTGT	57.289	33.333	0.00	0.00	0.00	3.55
2238	4161	9.939424	ACTCCCTCTGTAAACTAATATAAGAGT	57.061	33.333	0.00	0.00	0.00	3.24
2244	4167	9.710818	TCAACTACTCCCTCTGTAAACTAATAT	57.289	33.333	0.00	0.00	0.00	1.28
2245	4168	9.710818	ATCAACTACTCCCTCTGTAAACTAATA	57.289	33.333	0.00	0.00	0.00	0.98
2246	4169	8.611051	ATCAACTACTCCCTCTGTAAACTAAT	57.389	34.615	0.00	0.00	0.00	1.73
2247	4170	9.710818	ATATCAACTACTCCCTCTGTAAACTAA	57.289	33.333	0.00	0.00	0.00	2.24
2249	4172	9.884814	ATATATCAACTACTCCCTCTGTAAACT	57.115	33.333	0.00	0.00	0.00	2.66
2263	4186	9.947669	ACCGCGAAATATCTATATATCAACTAC	57.052	33.333	8.23	0.00	0.00	2.73
2766	4691	6.985117	ACGTGTGTATGTTCTCCTTTACTTA	58.015	36.000	0.00	0.00	0.00	2.24
2789	4714	4.022849	AGCAGTTGATCTTGCTTTTGGTAC	60.023	41.667	12.24	0.00	33.34	3.34
2865	5219	3.999663	GGTCTTCTGTTCATGAGTTCCAG	59.000	47.826	0.00	1.77	0.00	3.86
2891	5245	1.925255	TGATTTGAAGGGCCATCTCCT	59.075	47.619	10.50	0.00	35.88	3.69
2946	5300	3.827008	TGCAGGACTGAATCTGGTATC	57.173	47.619	3.00	0.00	0.00	2.24
3097	5495	2.225547	TGGGTTTCACCTCTAGCCTACT	60.226	50.000	0.00	0.00	38.64	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.