Multiple sequence alignment - TraesCS2A01G446700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G446700 chr2A 100.000 1846 0 0 1 1846 695524880 695523035 0.000000e+00 3410
1 TraesCS2A01G446700 chr2A 100.000 418 0 0 2158 2575 695522723 695522306 0.000000e+00 773
2 TraesCS2A01G446700 chr2B 91.710 1158 60 13 688 1822 663141919 663140775 0.000000e+00 1574
3 TraesCS2A01G446700 chr2B 91.071 224 11 4 2342 2561 663140774 663140556 6.970000e-76 294
4 TraesCS2A01G446700 chr2B 91.371 197 17 0 2158 2354 412281702 412281506 1.170000e-68 270
5 TraesCS2A01G446700 chr2D 92.823 1031 44 9 814 1822 556072082 556071060 0.000000e+00 1467
6 TraesCS2A01G446700 chr2D 89.184 490 51 2 296 785 556072570 556072083 6.090000e-171 610
7 TraesCS2A01G446700 chr2D 89.241 474 51 0 296 769 607160742 607161215 6.130000e-166 593
8 TraesCS2A01G446700 chr2D 88.048 502 57 3 296 796 181341263 181341762 2.210000e-165 592
9 TraesCS2A01G446700 chr2D 89.053 475 51 1 298 772 506472753 506472280 2.850000e-164 588
10 TraesCS2A01G446700 chr2D 94.884 215 11 0 2347 2561 556071053 556070839 1.140000e-88 337
11 TraesCS2A01G446700 chr2D 97.238 181 5 0 1 181 204112765 204112945 8.950000e-80 307
12 TraesCS2A01G446700 chr5A 88.270 503 50 6 296 797 378429311 378428817 6.130000e-166 593
13 TraesCS2A01G446700 chr5A 96.739 184 6 0 1 184 550651279 550651096 8.950000e-80 307
14 TraesCS2A01G446700 chr5D 87.723 505 57 5 296 798 88578274 88578775 3.690000e-163 584
15 TraesCS2A01G446700 chr5D 87.154 506 60 4 296 797 229255076 229254572 1.030000e-158 569
16 TraesCS2A01G446700 chr5D 96.667 180 6 0 1 180 507918555 507918734 1.500000e-77 300
17 TraesCS2A01G446700 chr5D 91.146 192 17 0 2158 2349 369312792 369312983 7.070000e-66 261
18 TraesCS2A01G446700 chr3D 87.649 502 60 2 296 796 159799516 159800016 1.330000e-162 582
19 TraesCS2A01G446700 chr3D 96.739 184 6 0 1 184 168354809 168354626 8.950000e-80 307
20 TraesCS2A01G446700 chr3D 94.330 194 9 2 1 192 12278531 12278338 1.940000e-76 296
21 TraesCS2A01G446700 chr3D 90.323 124 12 0 179 302 325597130 325597007 2.050000e-36 163
22 TraesCS2A01G446700 chr7D 87.302 504 59 5 295 796 171047528 171047028 2.870000e-159 571
23 TraesCS2A01G446700 chr7D 77.621 639 113 19 999 1611 633538849 633539483 6.770000e-96 361
24 TraesCS2A01G446700 chr7D 94.764 191 8 2 1 191 439780696 439780508 1.940000e-76 296
25 TraesCS2A01G446700 chr7D 91.597 119 10 0 184 302 267983673 267983555 5.700000e-37 165
26 TraesCS2A01G446700 chr7D 90.400 125 10 2 179 302 370913760 370913637 2.050000e-36 163
27 TraesCS2A01G446700 chr7B 77.093 633 117 18 999 1609 749559300 749559926 8.820000e-90 340
28 TraesCS2A01G446700 chr7B 90.244 123 12 0 180 302 183170488 183170366 7.370000e-36 161
29 TraesCS2A01G446700 chrUn 95.699 186 8 0 1 186 68758258 68758073 1.500000e-77 300
30 TraesCS2A01G446700 chrUn 89.848 197 20 0 2158 2354 168671627 168671823 1.180000e-63 254
31 TraesCS2A01G446700 chr6D 96.667 180 6 0 1 180 26354060 26354239 1.500000e-77 300
32 TraesCS2A01G446700 chr6D 96.667 180 6 0 1 180 388990801 388990622 1.500000e-77 300
33 TraesCS2A01G446700 chr6D 91.371 197 17 0 2158 2354 420561699 420561503 1.170000e-68 270
34 TraesCS2A01G446700 chr6D 93.333 180 12 0 2175 2354 82904540 82904361 1.520000e-67 267
35 TraesCS2A01G446700 chr3A 91.878 197 16 0 2158 2354 475397345 475397541 2.520000e-70 276
36 TraesCS2A01G446700 chr3A 89.516 124 13 0 179 302 67170073 67169950 9.540000e-35 158
37 TraesCS2A01G446700 chr3A 90.083 121 12 0 179 299 456811395 456811515 9.540000e-35 158
38 TraesCS2A01G446700 chr5B 90.722 194 18 0 2161 2354 57920732 57920539 2.540000e-65 259
39 TraesCS2A01G446700 chr1B 90.355 197 19 0 2158 2354 50994097 50994293 2.540000e-65 259
40 TraesCS2A01G446700 chr4D 90.674 193 18 0 2162 2354 504134430 504134622 9.140000e-65 257
41 TraesCS2A01G446700 chr4B 89.516 124 13 0 179 302 248873058 248872935 9.540000e-35 158
42 TraesCS2A01G446700 chr4B 88.710 124 14 0 179 302 232343831 232343708 4.440000e-33 152
43 TraesCS2A01G446700 chr7A 88.710 124 14 0 179 302 534162441 534162318 4.440000e-33 152
44 TraesCS2A01G446700 chr4A 83.217 143 22 2 159 299 336603594 336603736 2.080000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G446700 chr2A 695522306 695524880 2574 True 2091.500000 3410 100.0000 1 2575 2 chr2A.!!$R1 2574
1 TraesCS2A01G446700 chr2B 663140556 663141919 1363 True 934.000000 1574 91.3905 688 2561 2 chr2B.!!$R2 1873
2 TraesCS2A01G446700 chr2D 556070839 556072570 1731 True 804.666667 1467 92.2970 296 2561 3 chr2D.!!$R2 2265
3 TraesCS2A01G446700 chr5D 88578274 88578775 501 False 584.000000 584 87.7230 296 798 1 chr5D.!!$F1 502
4 TraesCS2A01G446700 chr5D 229254572 229255076 504 True 569.000000 569 87.1540 296 797 1 chr5D.!!$R1 501
5 TraesCS2A01G446700 chr3D 159799516 159800016 500 False 582.000000 582 87.6490 296 796 1 chr3D.!!$F1 500
6 TraesCS2A01G446700 chr7D 171047028 171047528 500 True 571.000000 571 87.3020 295 796 1 chr7D.!!$R1 501
7 TraesCS2A01G446700 chr7D 633538849 633539483 634 False 361.000000 361 77.6210 999 1611 1 chr7D.!!$F1 612
8 TraesCS2A01G446700 chr7B 749559300 749559926 626 False 340.000000 340 77.0930 999 1609 1 chr7B.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1022 1.00006 GCTGTGCAATCTTTGGCAAGA 60.0 47.619 0.0 0.82 43.45 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2297 2376 0.029567 CGACCTCATACTCTGGACGC 59.97 60.0 0.0 0.0 33.25 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 9.935682 ATGAAAATACGTTTTATAGTGCATCTG 57.064 29.630 0.00 0.00 37.65 2.90
63 64 9.157104 TGAAAATACGTTTTATAGTGCATCTGA 57.843 29.630 0.00 0.00 37.65 3.27
133 134 8.677148 AGTTAATCAAACTCTACAAAGCTTGA 57.323 30.769 0.00 0.00 45.64 3.02
134 135 8.560374 AGTTAATCAAACTCTACAAAGCTTGAC 58.440 33.333 0.00 0.00 45.64 3.18
135 136 8.560374 GTTAATCAAACTCTACAAAGCTTGACT 58.440 33.333 0.00 0.00 35.05 3.41
136 137 7.573968 AATCAAACTCTACAAAGCTTGACTT 57.426 32.000 0.00 0.00 41.70 3.01
146 147 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
147 148 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
148 149 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
149 150 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
150 151 5.140454 AGCTTGACTTTGACCAAACCTTAT 58.860 37.500 0.00 0.00 0.00 1.73
151 152 6.303839 AGCTTGACTTTGACCAAACCTTATA 58.696 36.000 0.00 0.00 0.00 0.98
152 153 6.948309 AGCTTGACTTTGACCAAACCTTATAT 59.052 34.615 0.00 0.00 0.00 0.86
153 154 7.029563 GCTTGACTTTGACCAAACCTTATATG 58.970 38.462 0.00 0.00 0.00 1.78
154 155 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
155 156 5.123186 TGACTTTGACCAAACCTTATATGCG 59.877 40.000 0.00 0.00 0.00 4.73
156 157 4.398044 ACTTTGACCAAACCTTATATGCGG 59.602 41.667 0.00 0.00 0.00 5.69
157 158 3.916359 TGACCAAACCTTATATGCGGA 57.084 42.857 0.00 0.00 0.00 5.54
158 159 3.537580 TGACCAAACCTTATATGCGGAC 58.462 45.455 0.00 0.00 0.00 4.79
159 160 3.199071 TGACCAAACCTTATATGCGGACT 59.801 43.478 0.00 0.00 0.00 3.85
160 161 4.406326 TGACCAAACCTTATATGCGGACTA 59.594 41.667 0.00 0.00 0.00 2.59
161 162 5.104859 TGACCAAACCTTATATGCGGACTAA 60.105 40.000 0.00 0.00 0.00 2.24
162 163 5.747342 ACCAAACCTTATATGCGGACTAAA 58.253 37.500 0.00 0.00 0.00 1.85
163 164 6.181908 ACCAAACCTTATATGCGGACTAAAA 58.818 36.000 0.00 0.00 0.00 1.52
164 165 6.660094 ACCAAACCTTATATGCGGACTAAAAA 59.340 34.615 0.00 0.00 0.00 1.94
165 166 7.148137 ACCAAACCTTATATGCGGACTAAAAAG 60.148 37.037 0.00 0.00 0.00 2.27
166 167 7.066525 CCAAACCTTATATGCGGACTAAAAAGA 59.933 37.037 0.00 0.00 0.00 2.52
167 168 8.455682 CAAACCTTATATGCGGACTAAAAAGAA 58.544 33.333 0.00 0.00 0.00 2.52
168 169 8.570068 AACCTTATATGCGGACTAAAAAGAAA 57.430 30.769 0.00 0.00 0.00 2.52
169 170 7.982224 ACCTTATATGCGGACTAAAAAGAAAC 58.018 34.615 0.00 0.00 0.00 2.78
170 171 7.123830 CCTTATATGCGGACTAAAAAGAAACG 58.876 38.462 0.00 0.00 0.00 3.60
171 172 3.824414 ATGCGGACTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
172 173 2.836262 TGCGGACTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
173 174 2.803956 TGCGGACTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
174 175 2.159037 GCGGACTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
175 176 2.740447 CGGACTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
176 177 3.555586 CGGACTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
177 178 4.001652 GGACTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
178 179 4.504514 GGACTAAAAAGAAACGGAGGGAGT 60.505 45.833 0.00 0.00 0.00 3.85
179 180 5.279657 GGACTAAAAAGAAACGGAGGGAGTA 60.280 44.000 0.00 0.00 0.00 2.59
180 181 6.370186 ACTAAAAAGAAACGGAGGGAGTAT 57.630 37.500 0.00 0.00 0.00 2.12
181 182 6.776744 ACTAAAAAGAAACGGAGGGAGTATT 58.223 36.000 0.00 0.00 0.00 1.89
182 183 7.229308 ACTAAAAAGAAACGGAGGGAGTATTT 58.771 34.615 0.00 0.00 0.00 1.40
183 184 6.570672 AAAAAGAAACGGAGGGAGTATTTC 57.429 37.500 0.00 0.00 0.00 2.17
184 185 3.908643 AGAAACGGAGGGAGTATTTCC 57.091 47.619 0.00 0.00 46.00 3.13
185 186 3.451890 AGAAACGGAGGGAGTATTTCCT 58.548 45.455 0.00 0.00 45.98 3.36
186 187 3.844804 AGAAACGGAGGGAGTATTTCCTT 59.155 43.478 0.00 0.00 45.98 3.36
193 194 5.622346 GAGGGAGTATTTCCTTCTGTCAT 57.378 43.478 0.00 0.00 46.03 3.06
194 195 6.732896 GAGGGAGTATTTCCTTCTGTCATA 57.267 41.667 0.00 0.00 46.03 2.15
195 196 7.309770 GAGGGAGTATTTCCTTCTGTCATAT 57.690 40.000 0.00 0.00 46.03 1.78
196 197 7.309770 AGGGAGTATTTCCTTCTGTCATATC 57.690 40.000 0.00 0.00 45.98 1.63
197 198 6.846505 AGGGAGTATTTCCTTCTGTCATATCA 59.153 38.462 0.00 0.00 45.98 2.15
198 199 7.348274 AGGGAGTATTTCCTTCTGTCATATCAA 59.652 37.037 0.00 0.00 45.98 2.57
199 200 8.160106 GGGAGTATTTCCTTCTGTCATATCAAT 58.840 37.037 0.00 0.00 45.98 2.57
206 207 9.904198 TTTCCTTCTGTCATATCAATAATCACA 57.096 29.630 0.00 0.00 0.00 3.58
207 208 8.893219 TCCTTCTGTCATATCAATAATCACAC 57.107 34.615 0.00 0.00 0.00 3.82
208 209 7.933577 TCCTTCTGTCATATCAATAATCACACC 59.066 37.037 0.00 0.00 0.00 4.16
209 210 7.935755 CCTTCTGTCATATCAATAATCACACCT 59.064 37.037 0.00 0.00 0.00 4.00
210 211 9.987272 CTTCTGTCATATCAATAATCACACCTA 57.013 33.333 0.00 0.00 0.00 3.08
212 213 9.933723 TCTGTCATATCAATAATCACACCTATG 57.066 33.333 0.00 0.00 0.00 2.23
213 214 9.159364 CTGTCATATCAATAATCACACCTATGG 57.841 37.037 0.00 0.00 0.00 2.74
214 215 8.659527 TGTCATATCAATAATCACACCTATGGT 58.340 33.333 0.00 0.00 35.62 3.55
215 216 9.507329 GTCATATCAATAATCACACCTATGGTT 57.493 33.333 0.00 0.00 31.02 3.67
216 217 9.725019 TCATATCAATAATCACACCTATGGTTC 57.275 33.333 0.00 0.00 31.02 3.62
217 218 8.659491 CATATCAATAATCACACCTATGGTTCG 58.341 37.037 0.00 0.00 31.02 3.95
218 219 5.984725 TCAATAATCACACCTATGGTTCGT 58.015 37.500 0.00 0.00 31.02 3.85
219 220 7.114866 TCAATAATCACACCTATGGTTCGTA 57.885 36.000 0.00 0.00 31.02 3.43
220 221 7.557724 TCAATAATCACACCTATGGTTCGTAA 58.442 34.615 0.00 0.00 31.02 3.18
221 222 7.709182 TCAATAATCACACCTATGGTTCGTAAG 59.291 37.037 0.00 0.00 31.02 2.34
243 244 9.408069 GTAAGAACGATCTACCAAGTATTATGG 57.592 37.037 0.00 0.00 38.29 2.74
244 245 6.994221 AGAACGATCTACCAAGTATTATGGG 58.006 40.000 0.00 0.00 42.48 4.00
245 246 6.781014 AGAACGATCTACCAAGTATTATGGGA 59.219 38.462 0.00 0.00 42.48 4.37
246 247 6.342338 ACGATCTACCAAGTATTATGGGAC 57.658 41.667 0.00 0.00 42.48 4.46
260 261 2.655090 TGGGACAAGACAGATTGCAA 57.345 45.000 0.00 0.00 31.92 4.08
261 262 3.159213 TGGGACAAGACAGATTGCAAT 57.841 42.857 12.83 12.83 31.92 3.56
262 263 3.084039 TGGGACAAGACAGATTGCAATC 58.916 45.455 28.44 28.44 31.92 2.67
263 264 3.084039 GGGACAAGACAGATTGCAATCA 58.916 45.455 34.59 0.00 37.89 2.57
264 265 3.507233 GGGACAAGACAGATTGCAATCAA 59.493 43.478 34.59 0.00 37.89 2.57
265 266 4.159135 GGGACAAGACAGATTGCAATCAAT 59.841 41.667 34.59 24.26 45.04 2.57
266 267 5.357878 GGGACAAGACAGATTGCAATCAATA 59.642 40.000 34.59 0.00 42.60 1.90
267 268 6.040166 GGGACAAGACAGATTGCAATCAATAT 59.960 38.462 34.59 19.87 42.60 1.28
268 269 7.137426 GGACAAGACAGATTGCAATCAATATC 58.863 38.462 34.59 25.16 42.60 1.63
269 270 7.201758 GGACAAGACAGATTGCAATCAATATCA 60.202 37.037 34.59 0.00 42.60 2.15
270 271 8.058667 ACAAGACAGATTGCAATCAATATCAA 57.941 30.769 34.59 0.00 42.60 2.57
271 272 8.188799 ACAAGACAGATTGCAATCAATATCAAG 58.811 33.333 34.59 22.63 42.60 3.02
272 273 8.403236 CAAGACAGATTGCAATCAATATCAAGA 58.597 33.333 34.59 0.00 42.60 3.02
273 274 8.515695 AGACAGATTGCAATCAATATCAAGAA 57.484 30.769 34.59 0.00 42.60 2.52
274 275 8.404000 AGACAGATTGCAATCAATATCAAGAAC 58.596 33.333 34.59 15.09 42.60 3.01
275 276 8.058667 ACAGATTGCAATCAATATCAAGAACA 57.941 30.769 34.59 0.00 42.60 3.18
276 277 8.525316 ACAGATTGCAATCAATATCAAGAACAA 58.475 29.630 34.59 0.00 42.60 2.83
277 278 9.529325 CAGATTGCAATCAATATCAAGAACAAT 57.471 29.630 34.59 10.82 42.60 2.71
278 279 9.529325 AGATTGCAATCAATATCAAGAACAATG 57.471 29.630 34.59 0.00 42.60 2.82
279 280 9.524106 GATTGCAATCAATATCAAGAACAATGA 57.476 29.630 30.15 0.00 42.60 2.57
280 281 9.878667 ATTGCAATCAATATCAAGAACAATGAA 57.121 25.926 5.99 0.00 40.89 2.57
281 282 9.708092 TTGCAATCAATATCAAGAACAATGAAA 57.292 25.926 0.00 0.00 0.00 2.69
282 283 9.878667 TGCAATCAATATCAAGAACAATGAAAT 57.121 25.926 0.00 0.00 0.00 2.17
287 288 9.558648 TCAATATCAAGAACAATGAAATCAACG 57.441 29.630 0.00 0.00 0.00 4.10
288 289 8.800972 CAATATCAAGAACAATGAAATCAACGG 58.199 33.333 0.00 0.00 0.00 4.44
289 290 5.119931 TCAAGAACAATGAAATCAACGGG 57.880 39.130 0.00 0.00 0.00 5.28
290 291 4.582656 TCAAGAACAATGAAATCAACGGGT 59.417 37.500 0.00 0.00 0.00 5.28
291 292 5.765677 TCAAGAACAATGAAATCAACGGGTA 59.234 36.000 0.00 0.00 0.00 3.69
292 293 5.622770 AGAACAATGAAATCAACGGGTAC 57.377 39.130 0.00 0.00 0.00 3.34
293 294 5.067273 AGAACAATGAAATCAACGGGTACA 58.933 37.500 0.00 0.00 0.00 2.90
427 428 9.506018 AGAAAAATACTTGGCAATAAAAGCATT 57.494 25.926 0.00 0.00 0.00 3.56
452 453 7.395190 TTCACACTTATCCCAAGAATCAATG 57.605 36.000 0.00 0.00 0.00 2.82
476 477 8.500753 TGCTATTACGTGGTAAAGATGAAAAT 57.499 30.769 0.00 0.00 31.56 1.82
491 492 6.381801 AGATGAAAATCAAGTTTTAGCACGG 58.618 36.000 0.00 0.00 40.04 4.94
657 659 2.295909 ACAAGATTTAGCAAAGCGGCAA 59.704 40.909 1.45 0.00 35.83 4.52
668 670 3.730715 GCAAAGCGGCAATAATATCACAC 59.269 43.478 1.45 0.00 0.00 3.82
676 678 4.295870 GCAATAATATCACACGACTCCGA 58.704 43.478 0.00 0.00 39.50 4.55
714 716 7.044798 AGGAGCAATCAGAGTACTAATGAAAC 58.955 38.462 12.82 6.92 0.00 2.78
777 786 4.655762 TCTTGAGACATCGTGAATAGGG 57.344 45.455 0.00 0.00 0.00 3.53
785 818 4.906618 ACATCGTGAATAGGGAAACAAGT 58.093 39.130 0.00 0.00 0.00 3.16
787 820 6.106673 ACATCGTGAATAGGGAAACAAGTAG 58.893 40.000 0.00 0.00 0.00 2.57
798 831 4.499188 GGGAAACAAGTAGACAAGCAAACC 60.499 45.833 0.00 0.00 0.00 3.27
799 832 4.338400 GGAAACAAGTAGACAAGCAAACCT 59.662 41.667 0.00 0.00 0.00 3.50
800 833 5.163550 GGAAACAAGTAGACAAGCAAACCTT 60.164 40.000 0.00 0.00 0.00 3.50
801 834 5.500645 AACAAGTAGACAAGCAAACCTTC 57.499 39.130 0.00 0.00 0.00 3.46
802 835 3.883489 ACAAGTAGACAAGCAAACCTTCC 59.117 43.478 0.00 0.00 0.00 3.46
803 836 2.767505 AGTAGACAAGCAAACCTTCCG 58.232 47.619 0.00 0.00 0.00 4.30
804 837 1.804748 GTAGACAAGCAAACCTTCCGG 59.195 52.381 0.00 0.00 0.00 5.14
829 862 9.436957 GGTTGACTATATCATATAAACACCAGG 57.563 37.037 1.81 0.00 37.11 4.45
989 1022 1.000060 GCTGTGCAATCTTTGGCAAGA 60.000 47.619 0.00 0.82 43.45 3.02
997 1030 1.024271 TCTTTGGCAAGACACACAGC 58.976 50.000 0.00 0.00 33.80 4.40
1189 1233 2.691011 CTCACCTACTCTCCTGGTTAGC 59.309 54.545 0.00 0.00 30.72 3.09
1201 1245 2.571212 CTGGTTAGCACCTGAACACAA 58.429 47.619 0.00 0.00 44.61 3.33
1411 1480 7.608376 TGGATTTCAGAAATGTTTGGTACGATA 59.392 33.333 13.38 0.00 0.00 2.92
1442 1511 2.019984 GGGCAAACAGATGAGACATCC 58.980 52.381 7.93 0.00 0.00 3.51
1496 1565 2.228103 TGACGACAAGACAGATAACGCT 59.772 45.455 0.00 0.00 0.00 5.07
1567 1636 8.081633 CACAAAGTATATCAAGGCACAGAAAAA 58.918 33.333 0.00 0.00 0.00 1.94
1612 1681 7.033185 AGAAACGTTGTAAGAACAAAGCATTT 58.967 30.769 0.00 0.12 46.84 2.32
1619 1688 4.751767 AAGAACAAAGCATTTCCCACAA 57.248 36.364 0.00 0.00 35.03 3.33
1682 1751 3.920446 TCGCTGTATTGCTGTTTGTAGA 58.080 40.909 0.00 0.00 0.00 2.59
1701 1770 8.547967 TTGTAGATCTTGGACTTGTTATTCAC 57.452 34.615 0.00 0.00 0.00 3.18
1735 1804 4.922206 TGGATGGTTATATGATCTTGGGC 58.078 43.478 0.00 0.00 0.00 5.36
1736 1805 3.941483 GGATGGTTATATGATCTTGGGCG 59.059 47.826 0.00 0.00 0.00 6.13
1742 1811 0.813610 TATGATCTTGGGCGGTTGCG 60.814 55.000 0.00 0.00 44.10 4.85
1793 1872 2.655090 TGGTTCTCAACAGGATGCAA 57.345 45.000 0.00 0.00 42.53 4.08
1794 1873 2.229792 TGGTTCTCAACAGGATGCAAC 58.770 47.619 0.00 0.00 42.53 4.17
1822 1901 4.440525 GGGACACAATAATGGTGCATCAAG 60.441 45.833 2.42 0.00 39.87 3.02
1823 1902 4.107622 GACACAATAATGGTGCATCAAGC 58.892 43.478 2.42 0.00 45.96 4.01
1834 1913 2.973694 GCATCAAGCATCAAATGGGT 57.026 45.000 0.00 0.00 44.79 4.51
1835 1914 2.546778 GCATCAAGCATCAAATGGGTG 58.453 47.619 0.00 0.00 44.79 4.61
1836 1915 2.093869 GCATCAAGCATCAAATGGGTGT 60.094 45.455 0.00 0.00 44.79 4.16
1837 1916 3.517602 CATCAAGCATCAAATGGGTGTG 58.482 45.455 0.00 0.00 0.00 3.82
1838 1917 2.874014 TCAAGCATCAAATGGGTGTGA 58.126 42.857 0.00 0.00 0.00 3.58
1839 1918 3.433343 TCAAGCATCAAATGGGTGTGAT 58.567 40.909 0.00 0.00 34.78 3.06
1842 1921 2.197792 CATCAAATGGGTGTGATGCG 57.802 50.000 1.06 0.00 43.30 4.73
1843 1922 1.105457 ATCAAATGGGTGTGATGCGG 58.895 50.000 0.00 0.00 33.21 5.69
1844 1923 0.964860 TCAAATGGGTGTGATGCGGG 60.965 55.000 0.00 0.00 0.00 6.13
1845 1924 1.682005 AAATGGGTGTGATGCGGGG 60.682 57.895 0.00 0.00 0.00 5.73
2191 2270 8.980143 ATATTTCTCAATTTTGTAACCCAACG 57.020 30.769 0.00 0.00 31.20 4.10
2192 2271 5.838531 TTCTCAATTTTGTAACCCAACGT 57.161 34.783 0.00 0.00 31.20 3.99
2193 2272 5.838531 TCTCAATTTTGTAACCCAACGTT 57.161 34.783 0.00 0.00 38.57 3.99
2194 2273 6.210287 TCTCAATTTTGTAACCCAACGTTT 57.790 33.333 0.00 0.00 35.79 3.60
2195 2274 6.037098 TCTCAATTTTGTAACCCAACGTTTG 58.963 36.000 0.00 0.00 35.79 2.93
2196 2275 4.567159 TCAATTTTGTAACCCAACGTTTGC 59.433 37.500 0.00 0.00 35.79 3.68
2197 2276 2.580966 TTTGTAACCCAACGTTTGCC 57.419 45.000 0.00 0.00 35.79 4.52
2198 2277 1.765230 TTGTAACCCAACGTTTGCCT 58.235 45.000 0.00 0.00 35.79 4.75
2199 2278 1.025812 TGTAACCCAACGTTTGCCTG 58.974 50.000 0.00 0.00 35.79 4.85
2200 2279 1.310904 GTAACCCAACGTTTGCCTGA 58.689 50.000 0.00 0.00 35.79 3.86
2201 2280 1.883926 GTAACCCAACGTTTGCCTGAT 59.116 47.619 0.00 0.00 35.79 2.90
2202 2281 1.408969 AACCCAACGTTTGCCTGATT 58.591 45.000 0.00 0.00 0.00 2.57
2203 2282 2.279935 ACCCAACGTTTGCCTGATTA 57.720 45.000 0.00 0.00 0.00 1.75
2204 2283 1.883926 ACCCAACGTTTGCCTGATTAC 59.116 47.619 0.00 0.00 0.00 1.89
2205 2284 1.883275 CCCAACGTTTGCCTGATTACA 59.117 47.619 0.00 0.00 0.00 2.41
2206 2285 2.294791 CCCAACGTTTGCCTGATTACAA 59.705 45.455 0.00 0.00 0.00 2.41
2207 2286 3.243569 CCCAACGTTTGCCTGATTACAAA 60.244 43.478 0.00 0.00 33.55 2.83
2208 2287 3.980775 CCAACGTTTGCCTGATTACAAAG 59.019 43.478 0.00 0.00 36.50 2.77
2209 2288 3.915437 ACGTTTGCCTGATTACAAAGG 57.085 42.857 6.62 6.62 43.62 3.11
2210 2289 3.219281 ACGTTTGCCTGATTACAAAGGT 58.781 40.909 7.71 7.71 45.12 3.50
2211 2290 3.004315 ACGTTTGCCTGATTACAAAGGTG 59.996 43.478 11.59 0.00 46.91 4.00
2212 2291 3.252215 CGTTTGCCTGATTACAAAGGTGA 59.748 43.478 0.00 0.00 36.50 4.02
2213 2292 4.261405 CGTTTGCCTGATTACAAAGGTGAA 60.261 41.667 0.00 0.00 36.50 3.18
2214 2293 5.564651 CGTTTGCCTGATTACAAAGGTGAAT 60.565 40.000 0.00 0.00 36.50 2.57
2215 2294 6.223120 GTTTGCCTGATTACAAAGGTGAATT 58.777 36.000 0.00 0.00 36.50 2.17
2216 2295 7.375053 GTTTGCCTGATTACAAAGGTGAATTA 58.625 34.615 0.00 0.00 36.50 1.40
2217 2296 6.509418 TGCCTGATTACAAAGGTGAATTAC 57.491 37.500 0.00 0.00 35.86 1.89
2218 2297 6.007076 TGCCTGATTACAAAGGTGAATTACA 58.993 36.000 0.00 0.00 35.86 2.41
2219 2298 6.663093 TGCCTGATTACAAAGGTGAATTACAT 59.337 34.615 0.00 0.00 35.86 2.29
2220 2299 7.831690 TGCCTGATTACAAAGGTGAATTACATA 59.168 33.333 0.00 0.00 35.86 2.29
2221 2300 8.682710 GCCTGATTACAAAGGTGAATTACATAA 58.317 33.333 0.00 0.00 35.86 1.90
2223 2302 9.722056 CTGATTACAAAGGTGAATTACATAAGC 57.278 33.333 0.00 0.00 0.00 3.09
2224 2303 9.237187 TGATTACAAAGGTGAATTACATAAGCA 57.763 29.630 0.00 0.00 0.00 3.91
2225 2304 9.503427 GATTACAAAGGTGAATTACATAAGCAC 57.497 33.333 0.00 0.00 0.00 4.40
2226 2305 5.938322 ACAAAGGTGAATTACATAAGCACG 58.062 37.500 0.00 0.00 0.00 5.34
2227 2306 5.472137 ACAAAGGTGAATTACATAAGCACGT 59.528 36.000 0.00 0.00 0.00 4.49
2228 2307 5.545658 AAGGTGAATTACATAAGCACGTG 57.454 39.130 12.28 12.28 0.00 4.49
2229 2308 4.575885 AGGTGAATTACATAAGCACGTGT 58.424 39.130 18.38 0.00 0.00 4.49
2230 2309 5.726397 AGGTGAATTACATAAGCACGTGTA 58.274 37.500 18.38 2.52 0.00 2.90
2231 2310 6.167685 AGGTGAATTACATAAGCACGTGTAA 58.832 36.000 18.38 6.95 42.85 2.41
2233 2312 7.011109 AGGTGAATTACATAAGCACGTGTAATC 59.989 37.037 18.38 0.00 45.71 1.75
2234 2313 6.839301 GTGAATTACATAAGCACGTGTAATCG 59.161 38.462 18.38 6.16 45.71 3.34
2235 2314 6.532302 TGAATTACATAAGCACGTGTAATCGT 59.468 34.615 18.38 11.74 45.71 3.73
2248 2327 7.925703 ACGTGTAATCGTGATAAGAAATAGG 57.074 36.000 0.00 0.00 42.56 2.57
2249 2328 7.709947 ACGTGTAATCGTGATAAGAAATAGGA 58.290 34.615 0.00 0.00 42.56 2.94
2250 2329 8.192774 ACGTGTAATCGTGATAAGAAATAGGAA 58.807 33.333 0.00 0.00 42.56 3.36
2251 2330 9.193133 CGTGTAATCGTGATAAGAAATAGGAAT 57.807 33.333 0.00 0.00 0.00 3.01
2253 2332 8.988934 TGTAATCGTGATAAGAAATAGGAATGC 58.011 33.333 0.00 0.00 0.00 3.56
2254 2333 7.440523 AATCGTGATAAGAAATAGGAATGCC 57.559 36.000 0.00 0.00 0.00 4.40
2255 2334 5.924356 TCGTGATAAGAAATAGGAATGCCA 58.076 37.500 0.00 0.00 36.29 4.92
2256 2335 6.533730 TCGTGATAAGAAATAGGAATGCCAT 58.466 36.000 0.00 0.00 36.29 4.40
2257 2336 7.676004 TCGTGATAAGAAATAGGAATGCCATA 58.324 34.615 0.00 0.00 36.29 2.74
2258 2337 8.154203 TCGTGATAAGAAATAGGAATGCCATAA 58.846 33.333 0.00 0.00 36.29 1.90
2259 2338 8.446273 CGTGATAAGAAATAGGAATGCCATAAG 58.554 37.037 0.00 0.00 36.29 1.73
2260 2339 8.734386 GTGATAAGAAATAGGAATGCCATAAGG 58.266 37.037 0.00 0.00 36.29 2.69
2261 2340 8.668653 TGATAAGAAATAGGAATGCCATAAGGA 58.331 33.333 0.00 0.00 36.89 3.36
2262 2341 9.171877 GATAAGAAATAGGAATGCCATAAGGAG 57.828 37.037 0.00 0.00 36.89 3.69
2263 2342 5.885465 AGAAATAGGAATGCCATAAGGAGG 58.115 41.667 0.00 0.00 36.89 4.30
2264 2343 5.373854 AGAAATAGGAATGCCATAAGGAGGT 59.626 40.000 0.00 0.00 36.89 3.85
2265 2344 4.647564 ATAGGAATGCCATAAGGAGGTG 57.352 45.455 0.00 0.00 36.89 4.00
2266 2345 1.496429 AGGAATGCCATAAGGAGGTGG 59.504 52.381 0.00 0.00 36.89 4.61
2271 2350 2.311287 CCATAAGGAGGTGGCCTGT 58.689 57.895 3.32 0.00 38.58 4.00
2272 2351 0.625849 CCATAAGGAGGTGGCCTGTT 59.374 55.000 3.32 0.00 38.58 3.16
2273 2352 1.005924 CCATAAGGAGGTGGCCTGTTT 59.994 52.381 3.32 0.00 38.58 2.83
2274 2353 2.094675 CATAAGGAGGTGGCCTGTTTG 58.905 52.381 3.32 0.00 38.58 2.93
2275 2354 1.145571 TAAGGAGGTGGCCTGTTTGT 58.854 50.000 3.32 0.00 38.58 2.83
2276 2355 0.468029 AAGGAGGTGGCCTGTTTGTG 60.468 55.000 3.32 0.00 38.58 3.33
2277 2356 2.564721 GGAGGTGGCCTGTTTGTGC 61.565 63.158 3.32 0.00 31.76 4.57
2278 2357 2.906897 AGGTGGCCTGTTTGTGCG 60.907 61.111 3.32 0.00 29.57 5.34
2279 2358 4.645921 GGTGGCCTGTTTGTGCGC 62.646 66.667 3.32 0.00 0.00 6.09
2280 2359 4.645921 GTGGCCTGTTTGTGCGCC 62.646 66.667 4.18 0.00 41.99 6.53
2285 2364 3.964875 CTGTTTGTGCGCCGGCTT 61.965 61.111 26.68 0.00 40.82 4.35
2286 2365 3.879351 CTGTTTGTGCGCCGGCTTC 62.879 63.158 26.68 16.67 40.82 3.86
2287 2366 3.660111 GTTTGTGCGCCGGCTTCT 61.660 61.111 26.68 0.00 40.82 2.85
2288 2367 2.904866 TTTGTGCGCCGGCTTCTT 60.905 55.556 26.68 0.00 40.82 2.52
2289 2368 3.192954 TTTGTGCGCCGGCTTCTTG 62.193 57.895 26.68 9.69 40.82 3.02
2290 2369 4.617520 TGTGCGCCGGCTTCTTGA 62.618 61.111 26.68 0.00 40.82 3.02
2291 2370 3.127533 GTGCGCCGGCTTCTTGAT 61.128 61.111 26.68 0.00 40.82 2.57
2292 2371 2.819595 TGCGCCGGCTTCTTGATC 60.820 61.111 26.68 3.54 40.82 2.92
2293 2372 3.577313 GCGCCGGCTTCTTGATCC 61.577 66.667 26.68 0.00 35.83 3.36
2294 2373 3.264897 CGCCGGCTTCTTGATCCG 61.265 66.667 26.68 0.00 42.58 4.18
2297 2376 3.799753 CGGCTTCTTGATCCGGTG 58.200 61.111 0.00 0.00 39.52 4.94
2298 2377 2.464459 CGGCTTCTTGATCCGGTGC 61.464 63.158 0.00 0.00 39.52 5.01
2299 2378 2.464459 GGCTTCTTGATCCGGTGCG 61.464 63.158 0.00 0.00 0.00 5.34
2300 2379 1.741770 GCTTCTTGATCCGGTGCGT 60.742 57.895 0.00 0.00 0.00 5.24
2301 2380 1.696832 GCTTCTTGATCCGGTGCGTC 61.697 60.000 0.00 0.00 0.00 5.19
2302 2381 1.079405 TTCTTGATCCGGTGCGTCC 60.079 57.895 0.00 0.00 0.00 4.79
2303 2382 1.822114 TTCTTGATCCGGTGCGTCCA 61.822 55.000 0.00 0.00 35.57 4.02
2304 2383 1.811266 CTTGATCCGGTGCGTCCAG 60.811 63.158 0.00 0.00 35.57 3.86
2305 2384 2.225791 CTTGATCCGGTGCGTCCAGA 62.226 60.000 0.00 0.00 35.57 3.86
2306 2385 2.105128 GATCCGGTGCGTCCAGAG 59.895 66.667 0.00 0.00 35.57 3.35
2307 2386 2.680352 ATCCGGTGCGTCCAGAGT 60.680 61.111 0.00 0.00 35.57 3.24
2308 2387 1.379443 ATCCGGTGCGTCCAGAGTA 60.379 57.895 0.00 0.00 35.57 2.59
2309 2388 0.755698 ATCCGGTGCGTCCAGAGTAT 60.756 55.000 0.00 0.00 35.57 2.12
2310 2389 1.226974 CCGGTGCGTCCAGAGTATG 60.227 63.158 0.00 0.00 35.57 2.39
2311 2390 1.663379 CCGGTGCGTCCAGAGTATGA 61.663 60.000 0.00 0.00 35.57 2.15
2312 2391 0.248661 CGGTGCGTCCAGAGTATGAG 60.249 60.000 0.00 0.00 35.57 2.90
2313 2392 0.103208 GGTGCGTCCAGAGTATGAGG 59.897 60.000 0.00 0.00 35.97 3.86
2314 2393 0.818296 GTGCGTCCAGAGTATGAGGT 59.182 55.000 0.00 0.00 0.00 3.85
2315 2394 1.103803 TGCGTCCAGAGTATGAGGTC 58.896 55.000 0.00 0.00 0.00 3.85
2316 2395 0.029567 GCGTCCAGAGTATGAGGTCG 59.970 60.000 0.00 0.00 37.10 4.79
2317 2396 1.380524 CGTCCAGAGTATGAGGTCGT 58.619 55.000 0.00 0.00 31.08 4.34
2318 2397 1.331138 CGTCCAGAGTATGAGGTCGTC 59.669 57.143 0.00 0.00 31.08 4.20
2319 2398 2.366533 GTCCAGAGTATGAGGTCGTCA 58.633 52.381 0.00 0.00 40.38 4.35
2320 2399 2.753452 GTCCAGAGTATGAGGTCGTCAA 59.247 50.000 0.00 0.00 39.19 3.18
2321 2400 3.381908 GTCCAGAGTATGAGGTCGTCAAT 59.618 47.826 0.00 0.00 39.19 2.57
2322 2401 3.381590 TCCAGAGTATGAGGTCGTCAATG 59.618 47.826 0.00 0.00 39.19 2.82
2323 2402 3.381590 CCAGAGTATGAGGTCGTCAATGA 59.618 47.826 0.00 0.00 39.19 2.57
2324 2403 4.038522 CCAGAGTATGAGGTCGTCAATGAT 59.961 45.833 0.00 0.00 39.19 2.45
2325 2404 5.452496 CCAGAGTATGAGGTCGTCAATGATT 60.452 44.000 0.00 0.00 39.19 2.57
2326 2405 5.689514 CAGAGTATGAGGTCGTCAATGATTC 59.310 44.000 0.00 0.00 39.19 2.52
2327 2406 4.611943 AGTATGAGGTCGTCAATGATTCG 58.388 43.478 0.00 0.00 39.19 3.34
2328 2407 1.640428 TGAGGTCGTCAATGATTCGC 58.360 50.000 0.00 0.00 29.64 4.70
2329 2408 1.204704 TGAGGTCGTCAATGATTCGCT 59.795 47.619 0.00 0.00 29.64 4.93
2330 2409 2.271800 GAGGTCGTCAATGATTCGCTT 58.728 47.619 0.00 0.00 0.00 4.68
2331 2410 3.119280 TGAGGTCGTCAATGATTCGCTTA 60.119 43.478 0.00 0.00 29.64 3.09
2332 2411 3.857052 AGGTCGTCAATGATTCGCTTAA 58.143 40.909 0.00 0.00 0.00 1.85
2333 2412 3.865745 AGGTCGTCAATGATTCGCTTAAG 59.134 43.478 0.00 0.00 0.00 1.85
2334 2413 3.001330 GGTCGTCAATGATTCGCTTAAGG 59.999 47.826 4.29 0.00 0.00 2.69
2335 2414 3.001330 GTCGTCAATGATTCGCTTAAGGG 59.999 47.826 13.14 13.14 0.00 3.95
2336 2415 2.936498 CGTCAATGATTCGCTTAAGGGT 59.064 45.455 18.05 0.95 0.00 4.34
2337 2416 3.242413 CGTCAATGATTCGCTTAAGGGTG 60.242 47.826 18.05 8.90 0.00 4.61
2338 2417 3.938963 GTCAATGATTCGCTTAAGGGTGA 59.061 43.478 18.05 10.91 0.00 4.02
2339 2418 4.394920 GTCAATGATTCGCTTAAGGGTGAA 59.605 41.667 18.05 7.64 39.53 3.18
2340 2419 4.635765 TCAATGATTCGCTTAAGGGTGAAG 59.364 41.667 18.05 5.02 38.77 3.02
2341 2420 3.973206 TGATTCGCTTAAGGGTGAAGA 57.027 42.857 18.05 0.00 38.77 2.87
2342 2421 4.487714 TGATTCGCTTAAGGGTGAAGAT 57.512 40.909 18.05 7.00 38.77 2.40
2343 2422 4.191544 TGATTCGCTTAAGGGTGAAGATG 58.808 43.478 18.05 0.00 38.77 2.90
2344 2423 3.973206 TTCGCTTAAGGGTGAAGATGA 57.027 42.857 18.05 0.00 32.80 2.92
2352 2431 3.572632 AGGGTGAAGATGATGTGATGG 57.427 47.619 0.00 0.00 0.00 3.51
2353 2432 2.848694 AGGGTGAAGATGATGTGATGGT 59.151 45.455 0.00 0.00 0.00 3.55
2364 2443 4.991776 TGATGTGATGGTAAAAAGGGTCA 58.008 39.130 0.00 0.00 0.00 4.02
2387 2466 9.788960 GTCAATTTCATACTCTTGGGAAAATAC 57.211 33.333 0.00 0.00 33.47 1.89
2418 2497 9.082313 CTGATAAAACAAAATCCCAGGCTATAT 57.918 33.333 0.00 0.00 0.00 0.86
2427 2506 2.782925 TCCCAGGCTATATCCTTTTGCA 59.217 45.455 0.00 0.00 33.25 4.08
2452 2531 0.469892 CCCAGGTTGCCAAAGTTCCT 60.470 55.000 0.00 0.00 0.00 3.36
2453 2532 0.675633 CCAGGTTGCCAAAGTTCCTG 59.324 55.000 5.12 5.12 43.46 3.86
2561 2643 8.681486 TCCAAAATATGATCTCACATACAAGG 57.319 34.615 0.00 0.00 35.91 3.61
2562 2644 7.720957 TCCAAAATATGATCTCACATACAAGGG 59.279 37.037 0.00 0.00 35.91 3.95
2563 2645 7.040201 CCAAAATATGATCTCACATACAAGGGG 60.040 40.741 0.00 0.00 35.91 4.79
2564 2646 3.498774 ATGATCTCACATACAAGGGGC 57.501 47.619 0.00 0.00 0.00 5.80
2565 2647 2.195727 TGATCTCACATACAAGGGGCA 58.804 47.619 0.00 0.00 0.00 5.36
2566 2648 2.092968 TGATCTCACATACAAGGGGCAC 60.093 50.000 0.00 0.00 0.00 5.01
2567 2649 1.357137 TCTCACATACAAGGGGCACA 58.643 50.000 0.00 0.00 0.00 4.57
2568 2650 1.915489 TCTCACATACAAGGGGCACAT 59.085 47.619 0.00 0.00 0.00 3.21
2569 2651 3.111484 TCTCACATACAAGGGGCACATA 58.889 45.455 0.00 0.00 0.00 2.29
2570 2652 3.118408 TCTCACATACAAGGGGCACATAC 60.118 47.826 0.00 0.00 0.00 2.39
2571 2653 2.573915 TCACATACAAGGGGCACATACA 59.426 45.455 0.00 0.00 0.00 2.29
2572 2654 3.009584 TCACATACAAGGGGCACATACAA 59.990 43.478 0.00 0.00 0.00 2.41
2573 2655 3.378112 CACATACAAGGGGCACATACAAG 59.622 47.826 0.00 0.00 0.00 3.16
2574 2656 3.010138 ACATACAAGGGGCACATACAAGT 59.990 43.478 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.935682 CAGATGCACTATAAAACGTATTTTCAT 57.064 29.630 0.00 0.00 38.91 2.57
37 38 9.157104 TCAGATGCACTATAAAACGTATTTTCA 57.843 29.630 0.00 0.00 38.91 2.69
106 107 9.736023 CAAGCTTTGTAGAGTTTGATTAACTTT 57.264 29.630 0.00 0.00 47.00 2.66
107 108 9.120538 TCAAGCTTTGTAGAGTTTGATTAACTT 57.879 29.630 0.00 0.00 47.00 2.66
109 110 8.560374 AGTCAAGCTTTGTAGAGTTTGATTAAC 58.440 33.333 0.00 0.00 44.77 2.01
110 111 8.677148 AGTCAAGCTTTGTAGAGTTTGATTAA 57.323 30.769 0.00 0.00 44.77 1.40
111 112 8.677148 AAGTCAAGCTTTGTAGAGTTTGATTA 57.323 30.769 0.00 0.00 44.77 1.75
112 113 7.573968 AAGTCAAGCTTTGTAGAGTTTGATT 57.426 32.000 0.00 1.65 44.77 2.57
113 114 7.573968 AAAGTCAAGCTTTGTAGAGTTTGAT 57.426 32.000 13.62 0.00 44.77 2.57
126 127 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
127 128 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
128 129 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
129 130 7.029563 GCATATAAGGTTTGGTCAAAGTCAAG 58.970 38.462 0.00 0.00 0.00 3.02
130 131 6.348950 CGCATATAAGGTTTGGTCAAAGTCAA 60.349 38.462 0.00 0.00 0.00 3.18
131 132 5.123186 CGCATATAAGGTTTGGTCAAAGTCA 59.877 40.000 0.00 0.00 0.00 3.41
132 133 5.448632 CCGCATATAAGGTTTGGTCAAAGTC 60.449 44.000 0.00 0.00 0.00 3.01
133 134 4.398044 CCGCATATAAGGTTTGGTCAAAGT 59.602 41.667 0.00 0.00 0.00 2.66
134 135 4.638421 TCCGCATATAAGGTTTGGTCAAAG 59.362 41.667 0.00 0.00 0.00 2.77
135 136 4.396790 GTCCGCATATAAGGTTTGGTCAAA 59.603 41.667 0.00 0.00 0.00 2.69
136 137 3.942748 GTCCGCATATAAGGTTTGGTCAA 59.057 43.478 0.00 0.00 0.00 3.18
137 138 3.199071 AGTCCGCATATAAGGTTTGGTCA 59.801 43.478 0.00 0.00 0.00 4.02
138 139 3.805207 AGTCCGCATATAAGGTTTGGTC 58.195 45.455 0.00 0.00 0.00 4.02
139 140 3.926058 AGTCCGCATATAAGGTTTGGT 57.074 42.857 0.00 0.00 0.00 3.67
140 141 6.687081 TTTTAGTCCGCATATAAGGTTTGG 57.313 37.500 0.00 0.00 0.00 3.28
141 142 7.981142 TCTTTTTAGTCCGCATATAAGGTTTG 58.019 34.615 0.00 0.00 0.00 2.93
142 143 8.570068 TTCTTTTTAGTCCGCATATAAGGTTT 57.430 30.769 0.00 0.00 0.00 3.27
143 144 8.456471 GTTTCTTTTTAGTCCGCATATAAGGTT 58.544 33.333 0.00 0.00 0.00 3.50
144 145 7.201582 CGTTTCTTTTTAGTCCGCATATAAGGT 60.202 37.037 0.00 0.00 0.00 3.50
145 146 7.123830 CGTTTCTTTTTAGTCCGCATATAAGG 58.876 38.462 0.00 0.00 0.00 2.69
146 147 7.010738 TCCGTTTCTTTTTAGTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
147 148 6.817641 TCCGTTTCTTTTTAGTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
148 149 6.339730 TCCGTTTCTTTTTAGTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
149 150 5.180271 TCCGTTTCTTTTTAGTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
150 151 4.567971 TCCGTTTCTTTTTAGTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
151 152 3.404899 TCCGTTTCTTTTTAGTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
152 153 2.803956 CTCCGTTTCTTTTTAGTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
153 154 2.159037 CCTCCGTTTCTTTTTAGTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
154 155 2.740447 CCCTCCGTTTCTTTTTAGTCCG 59.260 50.000 0.00 0.00 0.00 4.79
155 156 4.001652 CTCCCTCCGTTTCTTTTTAGTCC 58.998 47.826 0.00 0.00 0.00 3.85
156 157 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
157 158 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
158 159 7.148289 GGAAATACTCCCTCCGTTTCTTTTTAG 60.148 40.741 0.00 0.00 38.44 1.85
159 160 6.656270 GGAAATACTCCCTCCGTTTCTTTTTA 59.344 38.462 0.00 0.00 38.44 1.52
160 161 5.475909 GGAAATACTCCCTCCGTTTCTTTTT 59.524 40.000 0.00 0.00 38.44 1.94
161 162 5.008331 GGAAATACTCCCTCCGTTTCTTTT 58.992 41.667 0.00 0.00 38.44 2.27
162 163 4.288887 AGGAAATACTCCCTCCGTTTCTTT 59.711 41.667 0.00 0.00 46.81 2.52
163 164 3.844804 AGGAAATACTCCCTCCGTTTCTT 59.155 43.478 0.00 0.00 46.81 2.52
164 165 3.451890 AGGAAATACTCCCTCCGTTTCT 58.548 45.455 0.00 0.00 46.81 2.52
165 166 3.908643 AGGAAATACTCCCTCCGTTTC 57.091 47.619 0.00 0.00 46.81 2.78
166 167 3.844804 AGAAGGAAATACTCCCTCCGTTT 59.155 43.478 0.00 0.00 46.81 3.60
167 168 3.197983 CAGAAGGAAATACTCCCTCCGTT 59.802 47.826 0.00 0.00 46.81 4.44
168 169 2.766828 CAGAAGGAAATACTCCCTCCGT 59.233 50.000 0.00 0.00 46.81 4.69
169 170 2.766828 ACAGAAGGAAATACTCCCTCCG 59.233 50.000 0.00 0.00 46.81 4.63
170 171 3.775316 TGACAGAAGGAAATACTCCCTCC 59.225 47.826 0.00 0.00 46.81 4.30
171 172 5.622346 ATGACAGAAGGAAATACTCCCTC 57.378 43.478 0.00 0.00 46.81 4.30
172 173 6.846505 TGATATGACAGAAGGAAATACTCCCT 59.153 38.462 0.00 0.00 46.81 4.20
173 174 7.067496 TGATATGACAGAAGGAAATACTCCC 57.933 40.000 0.00 0.00 46.81 4.30
180 181 9.904198 TGTGATTATTGATATGACAGAAGGAAA 57.096 29.630 0.00 0.00 0.00 3.13
181 182 9.330063 GTGTGATTATTGATATGACAGAAGGAA 57.670 33.333 0.00 0.00 0.00 3.36
182 183 7.933577 GGTGTGATTATTGATATGACAGAAGGA 59.066 37.037 0.00 0.00 0.00 3.36
183 184 7.935755 AGGTGTGATTATTGATATGACAGAAGG 59.064 37.037 0.00 0.00 0.00 3.46
184 185 8.899427 AGGTGTGATTATTGATATGACAGAAG 57.101 34.615 0.00 0.00 0.00 2.85
186 187 9.933723 CATAGGTGTGATTATTGATATGACAGA 57.066 33.333 0.00 0.00 0.00 3.41
187 188 9.159364 CCATAGGTGTGATTATTGATATGACAG 57.841 37.037 0.00 0.00 0.00 3.51
188 189 8.659527 ACCATAGGTGTGATTATTGATATGACA 58.340 33.333 0.00 0.00 32.98 3.58
189 190 9.507329 AACCATAGGTGTGATTATTGATATGAC 57.493 33.333 0.00 0.00 35.34 3.06
190 191 9.725019 GAACCATAGGTGTGATTATTGATATGA 57.275 33.333 0.00 0.00 35.34 2.15
191 192 8.659491 CGAACCATAGGTGTGATTATTGATATG 58.341 37.037 0.00 0.00 35.34 1.78
192 193 8.375506 ACGAACCATAGGTGTGATTATTGATAT 58.624 33.333 0.00 0.00 35.34 1.63
193 194 7.732025 ACGAACCATAGGTGTGATTATTGATA 58.268 34.615 0.00 0.00 35.34 2.15
194 195 6.591935 ACGAACCATAGGTGTGATTATTGAT 58.408 36.000 0.00 0.00 35.34 2.57
195 196 5.984725 ACGAACCATAGGTGTGATTATTGA 58.015 37.500 0.00 0.00 35.34 2.57
196 197 7.709182 TCTTACGAACCATAGGTGTGATTATTG 59.291 37.037 0.00 0.00 35.34 1.90
197 198 7.788026 TCTTACGAACCATAGGTGTGATTATT 58.212 34.615 0.00 0.00 35.34 1.40
198 199 7.356089 TCTTACGAACCATAGGTGTGATTAT 57.644 36.000 0.00 0.00 35.34 1.28
199 200 6.778834 TCTTACGAACCATAGGTGTGATTA 57.221 37.500 0.00 0.00 35.34 1.75
200 201 5.670792 TCTTACGAACCATAGGTGTGATT 57.329 39.130 0.00 0.00 35.34 2.57
201 202 5.416947 GTTCTTACGAACCATAGGTGTGAT 58.583 41.667 0.66 0.00 42.93 3.06
202 203 4.813027 GTTCTTACGAACCATAGGTGTGA 58.187 43.478 0.66 0.00 42.93 3.58
217 218 9.408069 CCATAATACTTGGTAGATCGTTCTTAC 57.592 37.037 0.48 0.00 33.17 2.34
218 219 8.582437 CCCATAATACTTGGTAGATCGTTCTTA 58.418 37.037 0.48 0.00 33.17 2.10
219 220 7.289317 TCCCATAATACTTGGTAGATCGTTCTT 59.711 37.037 0.48 0.00 33.17 2.52
220 221 6.781014 TCCCATAATACTTGGTAGATCGTTCT 59.219 38.462 0.97 0.97 35.90 3.01
221 222 6.867293 GTCCCATAATACTTGGTAGATCGTTC 59.133 42.308 0.00 0.00 31.99 3.95
222 223 6.325545 TGTCCCATAATACTTGGTAGATCGTT 59.674 38.462 0.00 0.00 31.99 3.85
223 224 5.836898 TGTCCCATAATACTTGGTAGATCGT 59.163 40.000 0.00 0.00 31.99 3.73
224 225 6.340962 TGTCCCATAATACTTGGTAGATCG 57.659 41.667 0.00 0.00 31.99 3.69
225 226 7.873505 GTCTTGTCCCATAATACTTGGTAGATC 59.126 40.741 0.00 0.00 31.99 2.75
226 227 7.347222 TGTCTTGTCCCATAATACTTGGTAGAT 59.653 37.037 0.00 0.00 31.99 1.98
227 228 6.670464 TGTCTTGTCCCATAATACTTGGTAGA 59.330 38.462 0.00 0.00 31.99 2.59
228 229 6.884832 TGTCTTGTCCCATAATACTTGGTAG 58.115 40.000 0.00 0.00 31.99 3.18
229 230 6.670464 TCTGTCTTGTCCCATAATACTTGGTA 59.330 38.462 0.00 0.00 31.99 3.25
230 231 5.487488 TCTGTCTTGTCCCATAATACTTGGT 59.513 40.000 0.00 0.00 31.99 3.67
231 232 5.989477 TCTGTCTTGTCCCATAATACTTGG 58.011 41.667 0.00 0.00 0.00 3.61
232 233 7.467811 GCAATCTGTCTTGTCCCATAATACTTG 60.468 40.741 0.00 0.00 0.00 3.16
233 234 6.543831 GCAATCTGTCTTGTCCCATAATACTT 59.456 38.462 0.00 0.00 0.00 2.24
234 235 6.058183 GCAATCTGTCTTGTCCCATAATACT 58.942 40.000 0.00 0.00 0.00 2.12
235 236 5.822519 TGCAATCTGTCTTGTCCCATAATAC 59.177 40.000 0.00 0.00 0.00 1.89
236 237 6.000246 TGCAATCTGTCTTGTCCCATAATA 58.000 37.500 0.00 0.00 0.00 0.98
237 238 4.858850 TGCAATCTGTCTTGTCCCATAAT 58.141 39.130 0.00 0.00 0.00 1.28
238 239 4.299586 TGCAATCTGTCTTGTCCCATAA 57.700 40.909 0.00 0.00 0.00 1.90
239 240 3.998913 TGCAATCTGTCTTGTCCCATA 57.001 42.857 0.00 0.00 0.00 2.74
240 241 2.885135 TGCAATCTGTCTTGTCCCAT 57.115 45.000 0.00 0.00 0.00 4.00
241 242 2.655090 TTGCAATCTGTCTTGTCCCA 57.345 45.000 0.00 0.00 0.00 4.37
242 243 3.084039 TGATTGCAATCTGTCTTGTCCC 58.916 45.455 33.23 9.68 36.39 4.46
243 244 4.771590 TTGATTGCAATCTGTCTTGTCC 57.228 40.909 33.23 10.16 36.39 4.02
244 245 7.700505 TGATATTGATTGCAATCTGTCTTGTC 58.299 34.615 33.23 22.24 43.43 3.18
245 246 7.634671 TGATATTGATTGCAATCTGTCTTGT 57.365 32.000 33.23 16.55 43.43 3.16
246 247 8.403236 TCTTGATATTGATTGCAATCTGTCTTG 58.597 33.333 33.23 19.28 43.43 3.02
247 248 8.515695 TCTTGATATTGATTGCAATCTGTCTT 57.484 30.769 33.23 17.95 43.43 3.01
248 249 8.404000 GTTCTTGATATTGATTGCAATCTGTCT 58.596 33.333 33.23 19.02 43.43 3.41
249 250 8.186163 TGTTCTTGATATTGATTGCAATCTGTC 58.814 33.333 33.23 23.33 43.43 3.51
250 251 8.058667 TGTTCTTGATATTGATTGCAATCTGT 57.941 30.769 33.23 24.67 43.43 3.41
251 252 8.920509 TTGTTCTTGATATTGATTGCAATCTG 57.079 30.769 33.23 16.11 43.43 2.90
252 253 9.529325 CATTGTTCTTGATATTGATTGCAATCT 57.471 29.630 33.23 20.42 43.43 2.40
253 254 9.524106 TCATTGTTCTTGATATTGATTGCAATC 57.476 29.630 28.83 28.83 43.43 2.67
254 255 9.878667 TTCATTGTTCTTGATATTGATTGCAAT 57.121 25.926 12.83 12.83 46.11 3.56
255 256 9.708092 TTTCATTGTTCTTGATATTGATTGCAA 57.292 25.926 0.00 0.00 38.60 4.08
256 257 9.878667 ATTTCATTGTTCTTGATATTGATTGCA 57.121 25.926 0.00 0.00 0.00 4.08
261 262 9.558648 CGTTGATTTCATTGTTCTTGATATTGA 57.441 29.630 0.00 0.00 0.00 2.57
262 263 8.800972 CCGTTGATTTCATTGTTCTTGATATTG 58.199 33.333 0.00 0.00 0.00 1.90
263 264 7.975616 CCCGTTGATTTCATTGTTCTTGATATT 59.024 33.333 0.00 0.00 0.00 1.28
264 265 7.122650 ACCCGTTGATTTCATTGTTCTTGATAT 59.877 33.333 0.00 0.00 0.00 1.63
265 266 6.432783 ACCCGTTGATTTCATTGTTCTTGATA 59.567 34.615 0.00 0.00 0.00 2.15
266 267 5.243730 ACCCGTTGATTTCATTGTTCTTGAT 59.756 36.000 0.00 0.00 0.00 2.57
267 268 4.582656 ACCCGTTGATTTCATTGTTCTTGA 59.417 37.500 0.00 0.00 0.00 3.02
268 269 4.870363 ACCCGTTGATTTCATTGTTCTTG 58.130 39.130 0.00 0.00 0.00 3.02
269 270 5.533154 TGTACCCGTTGATTTCATTGTTCTT 59.467 36.000 0.00 0.00 0.00 2.52
270 271 5.067273 TGTACCCGTTGATTTCATTGTTCT 58.933 37.500 0.00 0.00 0.00 3.01
271 272 5.365403 TGTACCCGTTGATTTCATTGTTC 57.635 39.130 0.00 0.00 0.00 3.18
272 273 5.975693 ATGTACCCGTTGATTTCATTGTT 57.024 34.783 0.00 0.00 0.00 2.83
273 274 7.639113 ATTATGTACCCGTTGATTTCATTGT 57.361 32.000 0.00 0.00 0.00 2.71
274 275 8.925161 AAATTATGTACCCGTTGATTTCATTG 57.075 30.769 0.00 0.00 0.00 2.82
275 276 8.966868 AGAAATTATGTACCCGTTGATTTCATT 58.033 29.630 0.00 0.00 35.54 2.57
276 277 8.519799 AGAAATTATGTACCCGTTGATTTCAT 57.480 30.769 0.00 0.00 35.54 2.57
277 278 7.931578 AGAAATTATGTACCCGTTGATTTCA 57.068 32.000 0.00 0.00 35.54 2.69
280 281 9.621629 TGATAAGAAATTATGTACCCGTTGATT 57.378 29.630 0.00 0.00 0.00 2.57
281 282 9.793259 ATGATAAGAAATTATGTACCCGTTGAT 57.207 29.630 0.00 0.00 0.00 2.57
282 283 9.621629 AATGATAAGAAATTATGTACCCGTTGA 57.378 29.630 0.00 0.00 0.00 3.18
322 323 7.303828 CATGAACATGTTGCCCAATCTTGGA 62.304 44.000 17.58 0.00 41.03 3.53
427 428 7.577426 GCATTGATTCTTGGGATAAGTGTGAAA 60.577 37.037 0.00 0.00 0.00 2.69
430 431 5.359009 AGCATTGATTCTTGGGATAAGTGTG 59.641 40.000 0.00 0.00 0.00 3.82
452 453 8.609176 TGATTTTCATCTTTACCACGTAATAGC 58.391 33.333 0.00 0.00 0.00 2.97
476 477 2.400399 CGAGACCGTGCTAAAACTTGA 58.600 47.619 0.00 0.00 0.00 3.02
571 573 5.391523 GCATGCCATCTTAACACTTTCGTTA 60.392 40.000 6.36 0.00 0.00 3.18
657 659 5.769484 AGTTCGGAGTCGTGTGATATTAT 57.231 39.130 0.00 0.00 37.69 1.28
668 670 1.226323 CGCCACTAGTTCGGAGTCG 60.226 63.158 3.44 0.00 37.82 4.18
676 678 2.359967 GCTCCTCCCGCCACTAGTT 61.360 63.158 0.00 0.00 0.00 2.24
752 757 6.183360 CCCTATTCACGATGTCTCAAGAAAAC 60.183 42.308 0.00 0.00 0.00 2.43
777 786 5.500645 AGGTTTGCTTGTCTACTTGTTTC 57.499 39.130 0.00 0.00 0.00 2.78
798 831 9.923143 TGTTTATATGATATAGTCAACCGGAAG 57.077 33.333 9.46 0.00 40.97 3.46
799 832 9.701098 GTGTTTATATGATATAGTCAACCGGAA 57.299 33.333 9.46 0.00 40.97 4.30
800 833 8.308931 GGTGTTTATATGATATAGTCAACCGGA 58.691 37.037 9.46 0.00 40.97 5.14
801 834 8.092068 TGGTGTTTATATGATATAGTCAACCGG 58.908 37.037 0.00 0.00 40.97 5.28
802 835 9.140286 CTGGTGTTTATATGATATAGTCAACCG 57.860 37.037 9.68 3.22 40.97 4.44
803 836 9.436957 CCTGGTGTTTATATGATATAGTCAACC 57.563 37.037 9.68 8.79 40.97 3.77
804 837 9.998106 ACCTGGTGTTTATATGATATAGTCAAC 57.002 33.333 0.00 6.90 40.97 3.18
844 877 9.155975 AGAACATTACAGTGTGAATAGACAATC 57.844 33.333 5.88 0.00 31.49 2.67
969 1002 1.000060 TCTTGCCAAAGATTGCACAGC 60.000 47.619 0.00 0.00 37.51 4.40
989 1022 1.133513 TCCCTTTCATTGGCTGTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
997 1030 1.760192 CAGAGGCTCCCTTTCATTGG 58.240 55.000 11.71 0.00 31.76 3.16
1091 1135 0.106519 ATCGGGAAGCAATTCAGGGG 60.107 55.000 0.00 0.00 0.00 4.79
1189 1233 4.019919 CTGAAGTGTTTGTGTTCAGGTG 57.980 45.455 3.81 0.00 42.30 4.00
1201 1245 6.461509 CCAAGAAAAGGCATAACTGAAGTGTT 60.462 38.462 0.00 0.00 0.00 3.32
1411 1480 7.016957 TCTCATCTGTTTGCCCTATAATCTCAT 59.983 37.037 0.00 0.00 0.00 2.90
1496 1565 1.616865 CCACTGGTACTGACGAAGGAA 59.383 52.381 0.00 0.00 0.00 3.36
1567 1636 0.529773 TCACGAGCTTGCTCAACGTT 60.530 50.000 20.59 0.00 35.05 3.99
1568 1637 0.529773 TTCACGAGCTTGCTCAACGT 60.530 50.000 20.59 11.76 37.68 3.99
1571 1640 2.238942 TTCTTCACGAGCTTGCTCAA 57.761 45.000 20.59 8.21 0.00 3.02
1612 1681 7.094377 GCTCTGAACTTATTTTACATTGTGGGA 60.094 37.037 0.00 0.00 0.00 4.37
1619 1688 8.515414 GGAAGTTGCTCTGAACTTATTTTACAT 58.485 33.333 0.00 0.00 44.46 2.29
1709 1778 7.781693 GCCCAAGATCATATAACCATCCAATAT 59.218 37.037 0.00 0.00 0.00 1.28
1719 1788 3.058224 GCAACCGCCCAAGATCATATAAC 60.058 47.826 0.00 0.00 0.00 1.89
1733 1802 0.096454 GACTGTAAATCGCAACCGCC 59.904 55.000 0.00 0.00 33.11 6.13
1734 1803 0.793861 TGACTGTAAATCGCAACCGC 59.206 50.000 0.00 0.00 0.00 5.68
1735 1804 2.415168 ACATGACTGTAAATCGCAACCG 59.585 45.455 0.00 0.00 32.49 4.44
1736 1805 3.188460 ACACATGACTGTAAATCGCAACC 59.812 43.478 0.00 0.00 33.14 3.77
1742 1811 6.972901 TCATCGACTACACATGACTGTAAATC 59.027 38.462 0.00 0.00 33.14 2.17
1793 1872 3.831911 CACCATTATTGTGTCCCCAAAGT 59.168 43.478 0.00 0.00 0.00 2.66
1794 1873 3.368323 GCACCATTATTGTGTCCCCAAAG 60.368 47.826 0.00 0.00 36.11 2.77
1824 1903 1.105457 CCGCATCACACCCATTTGAT 58.895 50.000 0.00 0.00 32.44 2.57
1825 1904 0.964860 CCCGCATCACACCCATTTGA 60.965 55.000 0.00 0.00 0.00 2.69
1826 1905 1.512230 CCCGCATCACACCCATTTG 59.488 57.895 0.00 0.00 0.00 2.32
1827 1906 1.682005 CCCCGCATCACACCCATTT 60.682 57.895 0.00 0.00 0.00 2.32
1828 1907 2.044053 CCCCGCATCACACCCATT 60.044 61.111 0.00 0.00 0.00 3.16
2166 2245 8.581578 ACGTTGGGTTACAAAATTGAGAAATAT 58.418 29.630 0.00 0.00 41.58 1.28
2167 2246 7.942990 ACGTTGGGTTACAAAATTGAGAAATA 58.057 30.769 0.00 0.00 41.58 1.40
2168 2247 6.811954 ACGTTGGGTTACAAAATTGAGAAAT 58.188 32.000 0.00 0.00 41.58 2.17
2169 2248 6.210287 ACGTTGGGTTACAAAATTGAGAAA 57.790 33.333 0.00 0.00 41.58 2.52
2170 2249 5.838531 ACGTTGGGTTACAAAATTGAGAA 57.161 34.783 0.00 0.00 41.58 2.87
2171 2250 5.838531 AACGTTGGGTTACAAAATTGAGA 57.161 34.783 0.00 0.00 41.58 3.27
2172 2251 5.276631 GCAAACGTTGGGTTACAAAATTGAG 60.277 40.000 0.00 0.00 41.58 3.02
2173 2252 4.567159 GCAAACGTTGGGTTACAAAATTGA 59.433 37.500 0.00 0.00 41.58 2.57
2174 2253 4.260415 GGCAAACGTTGGGTTACAAAATTG 60.260 41.667 0.00 0.00 41.58 2.32
2175 2254 3.872182 GGCAAACGTTGGGTTACAAAATT 59.128 39.130 0.00 0.00 41.58 1.82
2176 2255 3.133183 AGGCAAACGTTGGGTTACAAAAT 59.867 39.130 0.00 0.00 41.58 1.82
2177 2256 2.496470 AGGCAAACGTTGGGTTACAAAA 59.504 40.909 0.00 0.00 41.58 2.44
2178 2257 2.100989 AGGCAAACGTTGGGTTACAAA 58.899 42.857 0.00 0.00 41.58 2.83
2179 2258 1.405821 CAGGCAAACGTTGGGTTACAA 59.594 47.619 0.00 0.00 38.08 2.41
2180 2259 1.025812 CAGGCAAACGTTGGGTTACA 58.974 50.000 0.00 0.00 38.08 2.41
2181 2260 1.310904 TCAGGCAAACGTTGGGTTAC 58.689 50.000 0.00 0.00 38.08 2.50
2182 2261 2.279935 ATCAGGCAAACGTTGGGTTA 57.720 45.000 0.00 0.00 38.08 2.85
2183 2262 1.408969 AATCAGGCAAACGTTGGGTT 58.591 45.000 0.00 0.00 41.76 4.11
2184 2263 1.883926 GTAATCAGGCAAACGTTGGGT 59.116 47.619 0.00 0.00 0.00 4.51
2185 2264 1.883275 TGTAATCAGGCAAACGTTGGG 59.117 47.619 0.00 0.00 0.00 4.12
2186 2265 3.634568 TTGTAATCAGGCAAACGTTGG 57.365 42.857 0.00 0.00 0.00 3.77
2187 2266 3.980775 CCTTTGTAATCAGGCAAACGTTG 59.019 43.478 0.00 0.00 32.11 4.10
2188 2267 3.634910 ACCTTTGTAATCAGGCAAACGTT 59.365 39.130 0.00 0.00 32.11 3.99
2189 2268 3.004315 CACCTTTGTAATCAGGCAAACGT 59.996 43.478 0.00 0.00 32.11 3.99
2190 2269 3.252215 TCACCTTTGTAATCAGGCAAACG 59.748 43.478 0.00 0.00 32.11 3.60
2191 2270 4.846779 TCACCTTTGTAATCAGGCAAAC 57.153 40.909 0.00 0.00 32.11 2.93
2192 2271 6.418057 AATTCACCTTTGTAATCAGGCAAA 57.582 33.333 0.00 0.00 34.05 3.68
2193 2272 6.491745 TGTAATTCACCTTTGTAATCAGGCAA 59.508 34.615 0.00 0.00 0.00 4.52
2194 2273 6.007076 TGTAATTCACCTTTGTAATCAGGCA 58.993 36.000 0.00 0.00 0.00 4.75
2195 2274 6.509418 TGTAATTCACCTTTGTAATCAGGC 57.491 37.500 0.00 0.00 0.00 4.85
2197 2276 9.722056 GCTTATGTAATTCACCTTTGTAATCAG 57.278 33.333 0.00 0.00 0.00 2.90
2198 2277 9.237187 TGCTTATGTAATTCACCTTTGTAATCA 57.763 29.630 0.00 0.00 0.00 2.57
2199 2278 9.503427 GTGCTTATGTAATTCACCTTTGTAATC 57.497 33.333 0.00 0.00 0.00 1.75
2200 2279 8.181573 CGTGCTTATGTAATTCACCTTTGTAAT 58.818 33.333 0.00 0.00 0.00 1.89
2201 2280 7.173562 ACGTGCTTATGTAATTCACCTTTGTAA 59.826 33.333 0.00 0.00 0.00 2.41
2202 2281 6.651643 ACGTGCTTATGTAATTCACCTTTGTA 59.348 34.615 0.00 0.00 0.00 2.41
2203 2282 5.472137 ACGTGCTTATGTAATTCACCTTTGT 59.528 36.000 0.00 0.00 0.00 2.83
2204 2283 5.794945 CACGTGCTTATGTAATTCACCTTTG 59.205 40.000 0.82 0.00 0.00 2.77
2205 2284 5.472137 ACACGTGCTTATGTAATTCACCTTT 59.528 36.000 17.22 0.00 0.00 3.11
2206 2285 5.001232 ACACGTGCTTATGTAATTCACCTT 58.999 37.500 17.22 0.00 0.00 3.50
2207 2286 4.575885 ACACGTGCTTATGTAATTCACCT 58.424 39.130 17.22 0.00 0.00 4.00
2208 2287 4.939509 ACACGTGCTTATGTAATTCACC 57.060 40.909 17.22 0.00 0.00 4.02
2209 2288 6.839301 CGATTACACGTGCTTATGTAATTCAC 59.161 38.462 17.22 0.00 37.52 3.18
2210 2289 6.532302 ACGATTACACGTGCTTATGTAATTCA 59.468 34.615 17.22 0.00 44.84 2.57
2211 2290 6.929896 ACGATTACACGTGCTTATGTAATTC 58.070 36.000 17.22 5.01 44.84 2.17
2212 2291 6.897259 ACGATTACACGTGCTTATGTAATT 57.103 33.333 17.22 0.00 44.84 1.40
2225 2304 8.570096 TTCCTATTTCTTATCACGATTACACG 57.430 34.615 0.00 0.00 39.31 4.49
2227 2306 8.988934 GCATTCCTATTTCTTATCACGATTACA 58.011 33.333 0.00 0.00 0.00 2.41
2228 2307 8.443937 GGCATTCCTATTTCTTATCACGATTAC 58.556 37.037 0.00 0.00 0.00 1.89
2229 2308 8.154203 TGGCATTCCTATTTCTTATCACGATTA 58.846 33.333 0.00 0.00 0.00 1.75
2230 2309 6.998074 TGGCATTCCTATTTCTTATCACGATT 59.002 34.615 0.00 0.00 0.00 3.34
2231 2310 6.533730 TGGCATTCCTATTTCTTATCACGAT 58.466 36.000 0.00 0.00 0.00 3.73
2232 2311 5.924356 TGGCATTCCTATTTCTTATCACGA 58.076 37.500 0.00 0.00 0.00 4.35
2233 2312 6.808008 ATGGCATTCCTATTTCTTATCACG 57.192 37.500 0.00 0.00 0.00 4.35
2234 2313 8.734386 CCTTATGGCATTCCTATTTCTTATCAC 58.266 37.037 4.78 0.00 0.00 3.06
2235 2314 8.668653 TCCTTATGGCATTCCTATTTCTTATCA 58.331 33.333 4.78 0.00 0.00 2.15
2236 2315 9.171877 CTCCTTATGGCATTCCTATTTCTTATC 57.828 37.037 4.78 0.00 0.00 1.75
2237 2316 8.112183 CCTCCTTATGGCATTCCTATTTCTTAT 58.888 37.037 4.78 0.00 0.00 1.73
2238 2317 7.073725 ACCTCCTTATGGCATTCCTATTTCTTA 59.926 37.037 4.78 0.00 0.00 2.10
2239 2318 6.126068 ACCTCCTTATGGCATTCCTATTTCTT 60.126 38.462 4.78 0.00 0.00 2.52
2240 2319 5.373854 ACCTCCTTATGGCATTCCTATTTCT 59.626 40.000 4.78 0.00 0.00 2.52
2241 2320 5.474876 CACCTCCTTATGGCATTCCTATTTC 59.525 44.000 4.78 0.00 0.00 2.17
2242 2321 5.388654 CACCTCCTTATGGCATTCCTATTT 58.611 41.667 4.78 0.00 0.00 1.40
2243 2322 4.202609 CCACCTCCTTATGGCATTCCTATT 60.203 45.833 4.78 0.00 0.00 1.73
2244 2323 3.331889 CCACCTCCTTATGGCATTCCTAT 59.668 47.826 4.78 0.00 0.00 2.57
2245 2324 2.711009 CCACCTCCTTATGGCATTCCTA 59.289 50.000 4.78 0.00 0.00 2.94
2246 2325 1.496429 CCACCTCCTTATGGCATTCCT 59.504 52.381 4.78 0.00 0.00 3.36
2247 2326 1.986882 CCACCTCCTTATGGCATTCC 58.013 55.000 4.78 0.00 0.00 3.01
2253 2332 0.625849 AACAGGCCACCTCCTTATGG 59.374 55.000 5.01 0.00 39.16 2.74
2254 2333 2.094675 CAAACAGGCCACCTCCTTATG 58.905 52.381 5.01 0.00 33.25 1.90
2255 2334 1.710809 ACAAACAGGCCACCTCCTTAT 59.289 47.619 5.01 0.00 33.25 1.73
2256 2335 1.145571 ACAAACAGGCCACCTCCTTA 58.854 50.000 5.01 0.00 33.25 2.69
2257 2336 0.468029 CACAAACAGGCCACCTCCTT 60.468 55.000 5.01 0.00 33.25 3.36
2258 2337 1.151450 CACAAACAGGCCACCTCCT 59.849 57.895 5.01 0.00 36.78 3.69
2259 2338 2.564721 GCACAAACAGGCCACCTCC 61.565 63.158 5.01 0.00 0.00 4.30
2260 2339 2.908073 CGCACAAACAGGCCACCTC 61.908 63.158 5.01 0.00 0.00 3.85
2261 2340 2.906897 CGCACAAACAGGCCACCT 60.907 61.111 5.01 0.00 0.00 4.00
2262 2341 4.645921 GCGCACAAACAGGCCACC 62.646 66.667 5.01 0.00 0.00 4.61
2263 2342 4.645921 GGCGCACAAACAGGCCAC 62.646 66.667 10.83 0.00 44.91 5.01
2268 2347 3.879351 GAAGCCGGCGCACAAACAG 62.879 63.158 23.20 0.00 37.52 3.16
2269 2348 3.959975 GAAGCCGGCGCACAAACA 61.960 61.111 23.20 0.00 37.52 2.83
2270 2349 3.194272 AAGAAGCCGGCGCACAAAC 62.194 57.895 23.20 8.48 37.52 2.93
2271 2350 2.904866 AAGAAGCCGGCGCACAAA 60.905 55.556 23.20 0.00 37.52 2.83
2272 2351 3.659092 CAAGAAGCCGGCGCACAA 61.659 61.111 23.20 0.00 37.52 3.33
2273 2352 3.899981 ATCAAGAAGCCGGCGCACA 62.900 57.895 23.20 4.37 37.52 4.57
2274 2353 3.100862 GATCAAGAAGCCGGCGCAC 62.101 63.158 23.20 16.30 37.52 5.34
2275 2354 2.819595 GATCAAGAAGCCGGCGCA 60.820 61.111 23.20 2.32 37.52 6.09
2276 2355 3.577313 GGATCAAGAAGCCGGCGC 61.577 66.667 23.20 17.80 0.00 6.53
2277 2356 3.264897 CGGATCAAGAAGCCGGCG 61.265 66.667 23.20 6.32 41.29 6.46
2280 2359 2.464459 GCACCGGATCAAGAAGCCG 61.464 63.158 9.46 0.00 44.42 5.52
2281 2360 2.464459 CGCACCGGATCAAGAAGCC 61.464 63.158 9.46 0.00 0.00 4.35
2282 2361 1.696832 GACGCACCGGATCAAGAAGC 61.697 60.000 9.46 0.00 0.00 3.86
2283 2362 1.084370 GGACGCACCGGATCAAGAAG 61.084 60.000 9.46 0.00 0.00 2.85
2284 2363 1.079405 GGACGCACCGGATCAAGAA 60.079 57.895 9.46 0.00 0.00 2.52
2285 2364 2.279810 TGGACGCACCGGATCAAGA 61.280 57.895 9.46 0.00 42.61 3.02
2286 2365 2.264480 TGGACGCACCGGATCAAG 59.736 61.111 9.46 0.00 42.61 3.02
2292 2371 1.226974 CATACTCTGGACGCACCGG 60.227 63.158 0.00 0.00 45.93 5.28
2293 2372 0.248661 CTCATACTCTGGACGCACCG 60.249 60.000 0.00 0.00 42.61 4.94
2294 2373 0.103208 CCTCATACTCTGGACGCACC 59.897 60.000 0.00 0.00 39.54 5.01
2295 2374 0.818296 ACCTCATACTCTGGACGCAC 59.182 55.000 0.00 0.00 0.00 5.34
2296 2375 1.103803 GACCTCATACTCTGGACGCA 58.896 55.000 0.00 0.00 0.00 5.24
2297 2376 0.029567 CGACCTCATACTCTGGACGC 59.970 60.000 0.00 0.00 33.25 5.19
2298 2377 1.331138 GACGACCTCATACTCTGGACG 59.669 57.143 0.00 0.00 42.64 4.79
2299 2378 2.366533 TGACGACCTCATACTCTGGAC 58.633 52.381 0.00 0.00 0.00 4.02
2300 2379 2.801077 TGACGACCTCATACTCTGGA 57.199 50.000 0.00 0.00 0.00 3.86
2301 2380 3.381590 TCATTGACGACCTCATACTCTGG 59.618 47.826 0.00 0.00 0.00 3.86
2302 2381 4.639135 TCATTGACGACCTCATACTCTG 57.361 45.455 0.00 0.00 0.00 3.35
2303 2382 5.506483 CGAATCATTGACGACCTCATACTCT 60.506 44.000 0.00 0.00 0.00 3.24
2304 2383 4.677378 CGAATCATTGACGACCTCATACTC 59.323 45.833 0.00 0.00 0.00 2.59
2305 2384 4.611943 CGAATCATTGACGACCTCATACT 58.388 43.478 0.00 0.00 0.00 2.12
2306 2385 3.182572 GCGAATCATTGACGACCTCATAC 59.817 47.826 1.27 0.00 0.00 2.39
2307 2386 3.068165 AGCGAATCATTGACGACCTCATA 59.932 43.478 1.27 0.00 0.00 2.15
2308 2387 2.159043 AGCGAATCATTGACGACCTCAT 60.159 45.455 1.27 0.00 0.00 2.90
2309 2388 1.204704 AGCGAATCATTGACGACCTCA 59.795 47.619 1.27 0.00 0.00 3.86
2310 2389 1.927895 AGCGAATCATTGACGACCTC 58.072 50.000 1.27 0.00 0.00 3.85
2311 2390 2.386661 AAGCGAATCATTGACGACCT 57.613 45.000 1.27 0.00 0.00 3.85
2312 2391 3.001330 CCTTAAGCGAATCATTGACGACC 59.999 47.826 0.00 0.00 0.00 4.79
2313 2392 3.001330 CCCTTAAGCGAATCATTGACGAC 59.999 47.826 0.00 0.00 0.00 4.34
2314 2393 3.194861 CCCTTAAGCGAATCATTGACGA 58.805 45.455 0.00 0.00 0.00 4.20
2315 2394 2.936498 ACCCTTAAGCGAATCATTGACG 59.064 45.455 0.00 0.00 0.00 4.35
2316 2395 3.938963 TCACCCTTAAGCGAATCATTGAC 59.061 43.478 0.00 0.00 0.00 3.18
2317 2396 4.214986 TCACCCTTAAGCGAATCATTGA 57.785 40.909 0.00 0.00 0.00 2.57
2318 2397 4.635765 TCTTCACCCTTAAGCGAATCATTG 59.364 41.667 0.00 0.00 0.00 2.82
2319 2398 4.843728 TCTTCACCCTTAAGCGAATCATT 58.156 39.130 0.00 0.00 0.00 2.57
2320 2399 4.487714 TCTTCACCCTTAAGCGAATCAT 57.512 40.909 0.00 0.00 0.00 2.45
2321 2400 3.973206 TCTTCACCCTTAAGCGAATCA 57.027 42.857 0.00 0.00 0.00 2.57
2322 2401 4.442706 TCATCTTCACCCTTAAGCGAATC 58.557 43.478 0.00 0.00 0.00 2.52
2323 2402 4.487714 TCATCTTCACCCTTAAGCGAAT 57.512 40.909 0.00 0.00 0.00 3.34
2324 2403 3.973206 TCATCTTCACCCTTAAGCGAA 57.027 42.857 0.00 0.00 0.00 4.70
2325 2404 3.197766 ACATCATCTTCACCCTTAAGCGA 59.802 43.478 0.00 0.00 0.00 4.93
2326 2405 3.310774 CACATCATCTTCACCCTTAAGCG 59.689 47.826 0.00 0.00 0.00 4.68
2327 2406 4.517285 TCACATCATCTTCACCCTTAAGC 58.483 43.478 0.00 0.00 0.00 3.09
2328 2407 5.530171 CCATCACATCATCTTCACCCTTAAG 59.470 44.000 0.00 0.00 0.00 1.85
2329 2408 5.044919 ACCATCACATCATCTTCACCCTTAA 60.045 40.000 0.00 0.00 0.00 1.85
2330 2409 4.474651 ACCATCACATCATCTTCACCCTTA 59.525 41.667 0.00 0.00 0.00 2.69
2331 2410 3.267812 ACCATCACATCATCTTCACCCTT 59.732 43.478 0.00 0.00 0.00 3.95
2332 2411 2.848694 ACCATCACATCATCTTCACCCT 59.151 45.455 0.00 0.00 0.00 4.34
2333 2412 3.287867 ACCATCACATCATCTTCACCC 57.712 47.619 0.00 0.00 0.00 4.61
2334 2413 6.757897 TTTTACCATCACATCATCTTCACC 57.242 37.500 0.00 0.00 0.00 4.02
2335 2414 7.253422 CCTTTTTACCATCACATCATCTTCAC 58.747 38.462 0.00 0.00 0.00 3.18
2336 2415 6.377996 CCCTTTTTACCATCACATCATCTTCA 59.622 38.462 0.00 0.00 0.00 3.02
2337 2416 6.378280 ACCCTTTTTACCATCACATCATCTTC 59.622 38.462 0.00 0.00 0.00 2.87
2338 2417 6.256053 ACCCTTTTTACCATCACATCATCTT 58.744 36.000 0.00 0.00 0.00 2.40
2339 2418 5.831103 ACCCTTTTTACCATCACATCATCT 58.169 37.500 0.00 0.00 0.00 2.90
2340 2419 5.652014 TGACCCTTTTTACCATCACATCATC 59.348 40.000 0.00 0.00 0.00 2.92
2341 2420 5.579047 TGACCCTTTTTACCATCACATCAT 58.421 37.500 0.00 0.00 0.00 2.45
2342 2421 4.991776 TGACCCTTTTTACCATCACATCA 58.008 39.130 0.00 0.00 0.00 3.07
2343 2422 5.975693 TTGACCCTTTTTACCATCACATC 57.024 39.130 0.00 0.00 0.00 3.06
2344 2423 6.933514 AATTGACCCTTTTTACCATCACAT 57.066 33.333 0.00 0.00 0.00 3.21
2352 2431 9.626045 CAAGAGTATGAAATTGACCCTTTTTAC 57.374 33.333 0.00 0.00 0.00 2.01
2353 2432 8.802267 CCAAGAGTATGAAATTGACCCTTTTTA 58.198 33.333 0.00 0.00 0.00 1.52
2387 2466 7.205297 CCTGGGATTTTGTTTTATCAGCTATG 58.795 38.462 0.00 0.00 0.00 2.23
2418 2497 1.331214 CTGGGCTTCTTGCAAAAGGA 58.669 50.000 17.37 3.73 45.15 3.36
2427 2506 0.398381 TTTGGCAACCTGGGCTTCTT 60.398 50.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.