Multiple sequence alignment - TraesCS2A01G445800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G445800 chr2A 100.000 3209 0 0 1 3209 695187371 695190579 0.000000e+00 5927.0
1 TraesCS2A01G445800 chr2A 82.353 374 61 5 252 622 695277918 695278289 1.440000e-83 320.0
2 TraesCS2A01G445800 chr2A 84.354 294 46 0 329 622 695296457 695296750 4.050000e-74 289.0
3 TraesCS2A01G445800 chr2A 82.828 297 51 0 326 622 695154903 695155199 1.900000e-67 267.0
4 TraesCS2A01G445800 chr4D 94.776 1742 73 6 613 2341 491381482 491383218 0.000000e+00 2697.0
5 TraesCS2A01G445800 chr4D 96.386 83 2 1 3127 3209 150075869 150075788 5.580000e-28 135.0
6 TraesCS2A01G445800 chr4D 94.340 53 3 0 3 55 77835512 77835460 7.380000e-12 82.4
7 TraesCS2A01G445800 chr4D 91.525 59 4 1 1 59 500724618 500724675 2.650000e-11 80.5
8 TraesCS2A01G445800 chr4D 86.486 74 5 3 1 69 299767111 299767038 3.430000e-10 76.8
9 TraesCS2A01G445800 chr3D 94.655 1740 74 8 617 2343 334130 335863 0.000000e+00 2680.0
10 TraesCS2A01G445800 chr3D 95.581 792 33 2 2348 3137 610059464 610058673 0.000000e+00 1267.0
11 TraesCS2A01G445800 chr1D 94.704 1737 73 6 620 2343 316243969 316242239 0.000000e+00 2680.0
12 TraesCS2A01G445800 chr1D 94.318 88 3 2 3123 3209 460747661 460747747 2.010000e-27 134.0
13 TraesCS2A01G445800 chr1D 93.258 89 6 0 3121 3209 108694833 108694921 7.220000e-27 132.0
14 TraesCS2A01G445800 chr5D 94.649 1738 72 9 620 2343 555413535 555415265 0.000000e+00 2675.0
15 TraesCS2A01G445800 chr5D 94.464 1734 78 7 621 2341 78602934 78601206 0.000000e+00 2654.0
16 TraesCS2A01G445800 chr5D 94.231 1716 78 8 621 2320 552029045 552027335 0.000000e+00 2601.0
17 TraesCS2A01G445800 chr5D 95.734 797 32 2 2343 3137 552027223 552026427 0.000000e+00 1282.0
18 TraesCS2A01G445800 chr2D 94.124 1736 83 8 621 2343 617340745 617342474 0.000000e+00 2623.0
19 TraesCS2A01G445800 chr2D 82.447 188 33 0 418 605 593194090 593193903 7.120000e-37 165.0
20 TraesCS2A01G445800 chr6D 94.067 1736 84 10 621 2343 420171217 420172946 0.000000e+00 2617.0
21 TraesCS2A01G445800 chr6D 95.294 85 3 1 3125 3209 258256967 258256884 2.010000e-27 134.0
22 TraesCS2A01G445800 chr7D 94.104 1713 83 7 621 2320 531067727 531066020 0.000000e+00 2588.0
23 TraesCS2A01G445800 chr7D 90.000 60 5 1 1 59 184831229 184831288 3.430000e-10 76.8
24 TraesCS2A01G445800 chr4A 94.994 799 36 3 2343 3137 478228939 478229737 0.000000e+00 1251.0
25 TraesCS2A01G445800 chr4A 93.734 798 47 3 2343 3137 731635513 731634716 0.000000e+00 1194.0
26 TraesCS2A01G445800 chr5A 94.228 797 42 4 2343 3137 666198672 666197878 0.000000e+00 1214.0
27 TraesCS2A01G445800 chr5A 96.341 82 2 1 3128 3209 99241774 99241694 2.010000e-27 134.0
28 TraesCS2A01G445800 chr7B 93.977 797 46 2 2343 3137 619625763 619626559 0.000000e+00 1205.0
29 TraesCS2A01G445800 chr7B 92.391 92 5 2 3119 3209 209623668 209623758 2.600000e-26 130.0
30 TraesCS2A01G445800 chr2B 93.601 797 49 2 2343 3137 191887676 191886880 0.000000e+00 1188.0
31 TraesCS2A01G445800 chr2B 96.939 294 9 0 329 622 662579793 662580086 8.000000e-136 494.0
32 TraesCS2A01G445800 chr2B 91.416 233 12 6 103 334 662579511 662579736 2.400000e-81 313.0
33 TraesCS2A01G445800 chr2B 84.281 299 47 0 324 622 662377756 662378054 3.130000e-75 292.0
34 TraesCS2A01G445800 chr2B 82.653 294 50 1 329 622 662652160 662652452 3.180000e-65 259.0
35 TraesCS2A01G445800 chr2B 84.064 251 38 2 355 604 719452955 719452706 1.150000e-59 241.0
36 TraesCS2A01G445800 chr2B 94.253 87 5 0 3123 3209 391292803 391292889 2.010000e-27 134.0
37 TraesCS2A01G445800 chr2B 91.579 95 6 2 3116 3209 598514123 598514030 2.600000e-26 130.0
38 TraesCS2A01G445800 chr2B 100.000 46 0 0 4 49 488985670 488985625 5.700000e-13 86.1
39 TraesCS2A01G445800 chr1A 93.408 804 42 10 2343 3137 25269199 25268398 0.000000e+00 1181.0
40 TraesCS2A01G445800 chr1A 93.284 804 43 10 2343 3137 77265192 77265993 0.000000e+00 1175.0
41 TraesCS2A01G445800 chr6A 96.471 85 2 1 3125 3209 116781060 116780977 4.320000e-29 139.0
42 TraesCS2A01G445800 chrUn 97.959 49 1 0 3 51 392560212 392560164 5.700000e-13 86.1
43 TraesCS2A01G445800 chr7A 90.164 61 5 1 4 64 108762206 108762147 9.540000e-11 78.7
44 TraesCS2A01G445800 chr6B 89.231 65 4 3 4 65 386437953 386437889 9.540000e-11 78.7
45 TraesCS2A01G445800 chr6B 90.164 61 5 1 1 60 583446027 583445967 9.540000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G445800 chr2A 695187371 695190579 3208 False 5927.0 5927 100.0000 1 3209 1 chr2A.!!$F2 3208
1 TraesCS2A01G445800 chr4D 491381482 491383218 1736 False 2697.0 2697 94.7760 613 2341 1 chr4D.!!$F1 1728
2 TraesCS2A01G445800 chr3D 334130 335863 1733 False 2680.0 2680 94.6550 617 2343 1 chr3D.!!$F1 1726
3 TraesCS2A01G445800 chr3D 610058673 610059464 791 True 1267.0 1267 95.5810 2348 3137 1 chr3D.!!$R1 789
4 TraesCS2A01G445800 chr1D 316242239 316243969 1730 True 2680.0 2680 94.7040 620 2343 1 chr1D.!!$R1 1723
5 TraesCS2A01G445800 chr5D 555413535 555415265 1730 False 2675.0 2675 94.6490 620 2343 1 chr5D.!!$F1 1723
6 TraesCS2A01G445800 chr5D 78601206 78602934 1728 True 2654.0 2654 94.4640 621 2341 1 chr5D.!!$R1 1720
7 TraesCS2A01G445800 chr5D 552026427 552029045 2618 True 1941.5 2601 94.9825 621 3137 2 chr5D.!!$R2 2516
8 TraesCS2A01G445800 chr2D 617340745 617342474 1729 False 2623.0 2623 94.1240 621 2343 1 chr2D.!!$F1 1722
9 TraesCS2A01G445800 chr6D 420171217 420172946 1729 False 2617.0 2617 94.0670 621 2343 1 chr6D.!!$F1 1722
10 TraesCS2A01G445800 chr7D 531066020 531067727 1707 True 2588.0 2588 94.1040 621 2320 1 chr7D.!!$R1 1699
11 TraesCS2A01G445800 chr4A 478228939 478229737 798 False 1251.0 1251 94.9940 2343 3137 1 chr4A.!!$F1 794
12 TraesCS2A01G445800 chr4A 731634716 731635513 797 True 1194.0 1194 93.7340 2343 3137 1 chr4A.!!$R1 794
13 TraesCS2A01G445800 chr5A 666197878 666198672 794 True 1214.0 1214 94.2280 2343 3137 1 chr5A.!!$R2 794
14 TraesCS2A01G445800 chr7B 619625763 619626559 796 False 1205.0 1205 93.9770 2343 3137 1 chr7B.!!$F2 794
15 TraesCS2A01G445800 chr2B 191886880 191887676 796 True 1188.0 1188 93.6010 2343 3137 1 chr2B.!!$R1 794
16 TraesCS2A01G445800 chr2B 662579511 662580086 575 False 403.5 494 94.1775 103 622 2 chr2B.!!$F4 519
17 TraesCS2A01G445800 chr1A 25268398 25269199 801 True 1181.0 1181 93.4080 2343 3137 1 chr1A.!!$R1 794
18 TraesCS2A01G445800 chr1A 77265192 77265993 801 False 1175.0 1175 93.2840 2343 3137 1 chr1A.!!$F1 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 1020 0.181587 CCCGAGCTCACTCCTCTCTA 59.818 60.0 15.40 0.0 40.03 2.43 F
1346 1424 0.181114 TTGAAGGCACTGACACTGCT 59.819 50.0 6.97 0.0 40.86 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 1912 1.285962 ACCAGCTGGCCATACTGATTT 59.714 47.619 33.06 14.75 39.32 2.17 R
3166 3366 0.482446 TTGGAGGCCCAACAACATCT 59.518 50.000 0.00 0.00 46.94 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
40 41 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
41 42 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
42 43 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
43 44 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
44 45 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
45 46 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
46 47 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
48 49 6.607004 ATTTAGGAACGGAGGGAGTATATG 57.393 41.667 0.00 0.00 0.00 1.78
49 50 2.890814 AGGAACGGAGGGAGTATATGG 58.109 52.381 0.00 0.00 0.00 2.74
50 51 2.179424 AGGAACGGAGGGAGTATATGGT 59.821 50.000 0.00 0.00 0.00 3.55
51 52 2.299297 GGAACGGAGGGAGTATATGGTG 59.701 54.545 0.00 0.00 0.00 4.17
52 53 2.011122 ACGGAGGGAGTATATGGTGG 57.989 55.000 0.00 0.00 0.00 4.61
53 54 1.219724 ACGGAGGGAGTATATGGTGGT 59.780 52.381 0.00 0.00 0.00 4.16
54 55 2.448194 ACGGAGGGAGTATATGGTGGTA 59.552 50.000 0.00 0.00 0.00 3.25
55 56 3.117016 ACGGAGGGAGTATATGGTGGTAA 60.117 47.826 0.00 0.00 0.00 2.85
56 57 3.257624 CGGAGGGAGTATATGGTGGTAAC 59.742 52.174 0.00 0.00 0.00 2.50
84 85 5.695851 TCTGGAAGAAGTTTTCATGCTTC 57.304 39.130 3.38 3.38 42.31 3.86
85 86 4.214119 TCTGGAAGAAGTTTTCATGCTTCG 59.786 41.667 5.49 0.00 42.31 3.79
86 87 3.882888 TGGAAGAAGTTTTCATGCTTCGT 59.117 39.130 5.49 2.99 44.07 3.85
87 88 4.222114 GGAAGAAGTTTTCATGCTTCGTG 58.778 43.478 4.50 0.00 44.07 4.35
88 89 3.904136 AGAAGTTTTCATGCTTCGTGG 57.096 42.857 5.49 0.00 44.07 4.94
89 90 3.214328 AGAAGTTTTCATGCTTCGTGGT 58.786 40.909 5.49 0.00 44.07 4.16
90 91 3.003689 AGAAGTTTTCATGCTTCGTGGTG 59.996 43.478 5.49 0.00 44.07 4.17
91 92 2.571212 AGTTTTCATGCTTCGTGGTGA 58.429 42.857 0.00 0.00 0.00 4.02
92 93 2.948979 AGTTTTCATGCTTCGTGGTGAA 59.051 40.909 0.00 0.00 34.74 3.18
108 109 5.385617 GTGGTGAAGATCAATTCAGAAACG 58.614 41.667 0.00 0.00 39.78 3.60
109 110 4.083324 TGGTGAAGATCAATTCAGAAACGC 60.083 41.667 0.00 0.00 39.78 4.84
206 207 9.522804 GGAACAAAATGTGTGAAGTTGTTATTA 57.477 29.630 0.00 0.00 41.25 0.98
307 309 4.997395 TCTTATTCTGACTTGCACAGGTTC 59.003 41.667 3.24 0.00 36.22 3.62
325 327 4.070009 GGTTCGACTTTGTTCCCTTGTAT 58.930 43.478 0.00 0.00 0.00 2.29
326 328 5.012354 AGGTTCGACTTTGTTCCCTTGTATA 59.988 40.000 0.00 0.00 0.00 1.47
331 393 9.504708 TTCGACTTTGTTCCCTTGTATAATAAA 57.495 29.630 0.00 0.00 0.00 1.40
397 459 1.682854 CCATGCCAACACTTGTTCTGT 59.317 47.619 0.00 0.00 35.83 3.41
467 529 1.072489 TGTTTCAGTTGGTATGCCCGA 59.928 47.619 0.00 0.00 35.15 5.14
487 549 3.664276 CGAACACCAAGTGTAATGCTTCG 60.664 47.826 0.00 2.26 46.79 3.79
581 643 0.322816 AGCGTTGGACTCAATGGCAT 60.323 50.000 0.00 0.00 39.59 4.40
584 646 2.355197 CGTTGGACTCAATGGCATACA 58.645 47.619 0.00 0.00 36.51 2.29
601 663 5.393027 GGCATACATGGTTTACTGTCCAAAG 60.393 44.000 0.00 0.00 37.27 2.77
768 833 4.441773 GGTGGTTTTGACCATTTTAACCGT 60.442 41.667 1.10 0.00 42.41 4.83
921 986 3.775654 CGTCCCCACCAGCTCTCC 61.776 72.222 0.00 0.00 0.00 3.71
949 1020 0.181587 CCCGAGCTCACTCCTCTCTA 59.818 60.000 15.40 0.00 40.03 2.43
1237 1315 1.761449 TTGCAGCAAACTCCTGACAA 58.239 45.000 4.99 0.00 32.03 3.18
1260 1338 6.875972 ATGTGATAGACCCTAGTTTCTGTT 57.124 37.500 1.42 0.00 0.00 3.16
1261 1339 6.681729 TGTGATAGACCCTAGTTTCTGTTT 57.318 37.500 1.42 0.00 0.00 2.83
1345 1423 1.024271 TTTGAAGGCACTGACACTGC 58.976 50.000 0.00 0.00 40.86 4.40
1346 1424 0.181114 TTGAAGGCACTGACACTGCT 59.819 50.000 6.97 0.00 40.86 4.24
1371 1449 6.556639 AGGAGATTCATAGGATGTGCTACTA 58.443 40.000 0.00 0.00 0.00 1.82
1405 1483 7.301868 ACCAAGTTGTTGTGGATTTGATTAT 57.698 32.000 1.45 0.00 38.36 1.28
1436 1514 5.330455 TCTGCTATGTAGTGGAAACAGAG 57.670 43.478 0.00 0.00 44.46 3.35
1535 1614 4.393062 AGAGCACTGGAAACATATGAAACG 59.607 41.667 10.38 0.00 41.51 3.60
1635 1714 8.845227 TGTTATTCTGAATTTGCTTGTTCACTA 58.155 29.630 8.38 0.00 31.55 2.74
1668 1747 6.862469 ATTGATTTTCAGGATGGTGTGAAT 57.138 33.333 0.00 0.00 36.16 2.57
1678 1757 3.823873 GGATGGTGTGAATTGTGGTGTTA 59.176 43.478 0.00 0.00 0.00 2.41
1713 1792 1.518367 CCCCCTGGCCTGTAATTCTA 58.482 55.000 3.32 0.00 0.00 2.10
1817 1896 1.538849 GGTTGCAAAACTGCAGAAGGG 60.539 52.381 23.35 8.25 46.21 3.95
1833 1912 1.210204 AGGGGCTTGATTCTCTGGCA 61.210 55.000 0.00 0.00 0.00 4.92
1843 1922 6.688637 TTGATTCTCTGGCAAATCAGTATG 57.311 37.500 11.64 0.00 41.50 2.39
1882 1961 7.369607 TGATGTGTCCAAGTTGTTTGATTATG 58.630 34.615 1.45 0.00 39.21 1.90
1936 2015 2.835764 ACAAGCCAGGCAATCAATGAAT 59.164 40.909 15.80 0.00 0.00 2.57
1970 2049 0.251077 AAGCAACTTGAGGAGCAGGG 60.251 55.000 0.00 0.00 0.00 4.45
2076 2155 1.428912 ACAAGGAAGGCCATGAAGGAA 59.571 47.619 5.01 0.00 41.22 3.36
2140 2219 4.642437 AGATAGAGAATGTCGTTGCTGAGA 59.358 41.667 0.00 0.00 0.00 3.27
2214 2293 1.625818 GTGATGGAGGAGTGAAGTGGT 59.374 52.381 0.00 0.00 0.00 4.16
2219 2298 1.205893 GGAGGAGTGAAGTGGTAGCTG 59.794 57.143 0.00 0.00 0.00 4.24
2329 2410 8.877195 TGAACTACCTTTGAACTACCTAAGAAT 58.123 33.333 0.00 0.00 0.00 2.40
2402 2585 8.887717 GTTGTATCATAAGTTCTTGCTGAGATT 58.112 33.333 0.00 0.00 33.49 2.40
2412 2595 8.000780 AGTTCTTGCTGAGATTTGTTTACTTT 57.999 30.769 0.00 0.00 33.49 2.66
2582 2768 4.832266 AGATTGCAAACACCCTGATAAACA 59.168 37.500 1.71 0.00 0.00 2.83
2627 2827 3.592059 TCTGGCGATAACTGTTGTAACC 58.408 45.455 2.69 2.48 0.00 2.85
2841 3041 2.159338 TCGTCGTTGCCCATAGTAGTTC 60.159 50.000 0.00 0.00 0.00 3.01
2866 3066 1.071699 TGTAGCTTGTGTTGGAGGGAC 59.928 52.381 0.00 0.00 0.00 4.46
2905 3105 1.000396 GTTCCCTCTGCCCAGCATT 60.000 57.895 0.00 0.00 38.13 3.56
2935 3135 1.598701 GCCTCCTTCATTGCCCACAC 61.599 60.000 0.00 0.00 0.00 3.82
2940 3140 1.331214 CTTCATTGCCCACACCAACT 58.669 50.000 0.00 0.00 0.00 3.16
2944 3144 1.138661 CATTGCCCACACCAACTTGTT 59.861 47.619 0.00 0.00 0.00 2.83
2954 3154 2.037511 CACCAACTTGTTGATGGGCATT 59.962 45.455 14.30 0.00 42.22 3.56
2984 3184 2.438434 GGGGTTGCATAGCGCTGT 60.438 61.111 22.90 11.62 43.06 4.40
3057 3257 4.988598 CCACGAGCCCTTGTGCGT 62.989 66.667 9.68 0.00 42.30 5.24
3116 3316 3.738246 TCTTCGTCGCTGCGAGCT 61.738 61.111 26.68 0.00 42.10 4.09
3137 3337 1.070601 GACCCAAAAAGCATGGCAACT 59.929 47.619 0.00 0.00 36.58 3.16
3138 3338 1.202675 ACCCAAAAAGCATGGCAACTG 60.203 47.619 0.00 0.00 36.58 3.16
3139 3339 1.070445 CCCAAAAAGCATGGCAACTGA 59.930 47.619 0.00 0.00 36.58 3.41
3140 3340 2.289819 CCCAAAAAGCATGGCAACTGAT 60.290 45.455 0.00 0.00 36.58 2.90
3141 3341 2.739913 CCAAAAAGCATGGCAACTGATG 59.260 45.455 0.00 0.00 37.61 3.07
3142 3342 3.395639 CAAAAAGCATGGCAACTGATGT 58.604 40.909 0.00 0.00 37.61 3.06
3143 3343 3.308438 AAAAGCATGGCAACTGATGTC 57.692 42.857 0.00 0.00 37.61 3.06
3144 3344 2.211250 AAGCATGGCAACTGATGTCT 57.789 45.000 0.00 0.00 33.68 3.41
3145 3345 3.354948 AAGCATGGCAACTGATGTCTA 57.645 42.857 0.00 0.00 33.68 2.59
3146 3346 2.636830 AGCATGGCAACTGATGTCTAC 58.363 47.619 0.00 0.00 33.68 2.59
3147 3347 2.238144 AGCATGGCAACTGATGTCTACT 59.762 45.455 0.00 0.00 33.68 2.57
3148 3348 3.452264 AGCATGGCAACTGATGTCTACTA 59.548 43.478 0.00 0.00 33.68 1.82
3149 3349 3.557595 GCATGGCAACTGATGTCTACTAC 59.442 47.826 0.00 0.00 33.68 2.73
3150 3350 4.758688 CATGGCAACTGATGTCTACTACA 58.241 43.478 0.00 0.00 39.44 2.74
3151 3351 4.188247 TGGCAACTGATGTCTACTACAC 57.812 45.455 0.00 0.00 38.24 2.90
3152 3352 3.576550 TGGCAACTGATGTCTACTACACA 59.423 43.478 0.00 0.00 38.24 3.72
3153 3353 4.039852 TGGCAACTGATGTCTACTACACAA 59.960 41.667 0.00 0.00 38.24 3.33
3154 3354 4.389077 GGCAACTGATGTCTACTACACAAC 59.611 45.833 0.00 0.00 42.09 3.32
3155 3355 4.389077 GCAACTGATGTCTACTACACAACC 59.611 45.833 0.00 0.00 42.09 3.77
3156 3356 5.784177 CAACTGATGTCTACTACACAACCT 58.216 41.667 0.00 0.00 42.09 3.50
3157 3357 6.223852 CAACTGATGTCTACTACACAACCTT 58.776 40.000 0.00 0.00 42.09 3.50
3158 3358 6.026947 ACTGATGTCTACTACACAACCTTC 57.973 41.667 0.00 0.00 42.09 3.46
3159 3359 5.775701 ACTGATGTCTACTACACAACCTTCT 59.224 40.000 0.00 0.00 42.09 2.85
3160 3360 6.267928 ACTGATGTCTACTACACAACCTTCTT 59.732 38.462 0.00 0.00 42.09 2.52
3161 3361 6.688578 TGATGTCTACTACACAACCTTCTTC 58.311 40.000 0.00 0.00 42.09 2.87
3162 3362 6.493802 TGATGTCTACTACACAACCTTCTTCT 59.506 38.462 0.00 0.00 42.09 2.85
3163 3363 6.726490 TGTCTACTACACAACCTTCTTCTT 57.274 37.500 0.00 0.00 31.43 2.52
3164 3364 6.513180 TGTCTACTACACAACCTTCTTCTTG 58.487 40.000 0.00 0.00 31.43 3.02
3165 3365 6.097839 TGTCTACTACACAACCTTCTTCTTGT 59.902 38.462 0.00 0.00 31.43 3.16
3166 3366 7.286087 TGTCTACTACACAACCTTCTTCTTGTA 59.714 37.037 0.00 0.00 31.43 2.41
3167 3367 7.808856 GTCTACTACACAACCTTCTTCTTGTAG 59.191 40.741 5.27 5.27 41.37 2.74
3168 3368 6.726490 ACTACACAACCTTCTTCTTGTAGA 57.274 37.500 12.31 0.00 39.06 2.59
3169 3369 7.304497 ACTACACAACCTTCTTCTTGTAGAT 57.696 36.000 12.31 0.00 39.06 1.98
3170 3370 7.155328 ACTACACAACCTTCTTCTTGTAGATG 58.845 38.462 12.31 0.00 39.06 2.90
3171 3371 5.930135 ACACAACCTTCTTCTTGTAGATGT 58.070 37.500 0.00 0.00 0.00 3.06
3172 3372 6.357367 ACACAACCTTCTTCTTGTAGATGTT 58.643 36.000 0.00 0.00 0.00 2.71
3173 3373 6.260936 ACACAACCTTCTTCTTGTAGATGTTG 59.739 38.462 13.30 13.30 40.02 3.33
3174 3374 6.260936 CACAACCTTCTTCTTGTAGATGTTGT 59.739 38.462 14.10 14.10 43.62 3.32
3175 3375 6.828785 ACAACCTTCTTCTTGTAGATGTTGTT 59.171 34.615 14.10 0.00 42.06 2.83
3176 3376 6.867662 ACCTTCTTCTTGTAGATGTTGTTG 57.132 37.500 0.00 0.00 0.00 3.33
3177 3377 5.765182 ACCTTCTTCTTGTAGATGTTGTTGG 59.235 40.000 0.00 0.00 0.00 3.77
3178 3378 5.182001 CCTTCTTCTTGTAGATGTTGTTGGG 59.818 44.000 0.00 0.00 0.00 4.12
3179 3379 4.072131 TCTTCTTGTAGATGTTGTTGGGC 58.928 43.478 0.00 0.00 0.00 5.36
3180 3380 2.790433 TCTTGTAGATGTTGTTGGGCC 58.210 47.619 0.00 0.00 0.00 5.80
3181 3381 2.375174 TCTTGTAGATGTTGTTGGGCCT 59.625 45.455 4.53 0.00 0.00 5.19
3182 3382 2.489938 TGTAGATGTTGTTGGGCCTC 57.510 50.000 4.53 0.00 0.00 4.70
3183 3383 1.004277 TGTAGATGTTGTTGGGCCTCC 59.996 52.381 4.53 0.00 0.00 4.30
3184 3384 1.004277 GTAGATGTTGTTGGGCCTCCA 59.996 52.381 4.53 0.00 42.25 3.86
3192 3392 3.179284 TGGGCCTCCAAATGCAGA 58.821 55.556 4.53 0.00 40.73 4.26
3193 3393 1.000521 TGGGCCTCCAAATGCAGAG 60.001 57.895 4.53 0.00 40.73 3.35
3199 3399 2.242043 CCTCCAAATGCAGAGGTTTGT 58.758 47.619 10.81 0.00 44.01 2.83
3200 3400 3.420893 CCTCCAAATGCAGAGGTTTGTA 58.579 45.455 10.81 0.00 44.01 2.41
3201 3401 3.441572 CCTCCAAATGCAGAGGTTTGTAG 59.558 47.826 10.81 4.30 44.01 2.74
3202 3402 3.420893 TCCAAATGCAGAGGTTTGTAGG 58.579 45.455 9.10 0.00 34.37 3.18
3203 3403 3.073798 TCCAAATGCAGAGGTTTGTAGGA 59.926 43.478 9.10 0.00 34.37 2.94
3204 3404 3.191371 CCAAATGCAGAGGTTTGTAGGAC 59.809 47.826 9.10 0.00 34.37 3.85
3205 3405 3.788227 AATGCAGAGGTTTGTAGGACA 57.212 42.857 0.00 0.00 0.00 4.02
3206 3406 2.839486 TGCAGAGGTTTGTAGGACAG 57.161 50.000 0.00 0.00 0.00 3.51
3207 3407 2.047061 TGCAGAGGTTTGTAGGACAGT 58.953 47.619 0.00 0.00 0.00 3.55
3208 3408 3.236047 TGCAGAGGTTTGTAGGACAGTA 58.764 45.455 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
14 15 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
15 16 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
16 17 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
17 18 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
18 19 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
19 20 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
20 21 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
22 23 9.417561 CATATACTCCCTCCGTTCCTAAATATA 57.582 37.037 0.00 0.00 0.00 0.86
23 24 7.344871 CCATATACTCCCTCCGTTCCTAAATAT 59.655 40.741 0.00 0.00 0.00 1.28
24 25 6.666546 CCATATACTCCCTCCGTTCCTAAATA 59.333 42.308 0.00 0.00 0.00 1.40
25 26 5.484290 CCATATACTCCCTCCGTTCCTAAAT 59.516 44.000 0.00 0.00 0.00 1.40
26 27 4.836736 CCATATACTCCCTCCGTTCCTAAA 59.163 45.833 0.00 0.00 0.00 1.85
27 28 4.140853 ACCATATACTCCCTCCGTTCCTAA 60.141 45.833 0.00 0.00 0.00 2.69
28 29 3.400322 ACCATATACTCCCTCCGTTCCTA 59.600 47.826 0.00 0.00 0.00 2.94
29 30 2.179424 ACCATATACTCCCTCCGTTCCT 59.821 50.000 0.00 0.00 0.00 3.36
30 31 2.299297 CACCATATACTCCCTCCGTTCC 59.701 54.545 0.00 0.00 0.00 3.62
31 32 2.299297 CCACCATATACTCCCTCCGTTC 59.701 54.545 0.00 0.00 0.00 3.95
32 33 2.326428 CCACCATATACTCCCTCCGTT 58.674 52.381 0.00 0.00 0.00 4.44
33 34 1.219724 ACCACCATATACTCCCTCCGT 59.780 52.381 0.00 0.00 0.00 4.69
34 35 2.011122 ACCACCATATACTCCCTCCG 57.989 55.000 0.00 0.00 0.00 4.63
35 36 4.228824 TGTTACCACCATATACTCCCTCC 58.771 47.826 0.00 0.00 0.00 4.30
36 37 5.881923 TTGTTACCACCATATACTCCCTC 57.118 43.478 0.00 0.00 0.00 4.30
37 38 6.841781 ATTTGTTACCACCATATACTCCCT 57.158 37.500 0.00 0.00 0.00 4.20
38 39 8.603304 AGATATTTGTTACCACCATATACTCCC 58.397 37.037 0.00 0.00 0.00 4.30
39 40 9.436957 CAGATATTTGTTACCACCATATACTCC 57.563 37.037 0.00 0.00 0.00 3.85
40 41 9.436957 CCAGATATTTGTTACCACCATATACTC 57.563 37.037 0.00 0.00 0.00 2.59
41 42 9.166222 TCCAGATATTTGTTACCACCATATACT 57.834 33.333 0.00 0.00 0.00 2.12
42 43 9.787435 TTCCAGATATTTGTTACCACCATATAC 57.213 33.333 0.00 0.00 0.00 1.47
44 45 8.723365 TCTTCCAGATATTTGTTACCACCATAT 58.277 33.333 0.00 0.00 0.00 1.78
45 46 8.096621 TCTTCCAGATATTTGTTACCACCATA 57.903 34.615 0.00 0.00 0.00 2.74
46 47 6.969043 TCTTCCAGATATTTGTTACCACCAT 58.031 36.000 0.00 0.00 0.00 3.55
47 48 6.381498 TCTTCCAGATATTTGTTACCACCA 57.619 37.500 0.00 0.00 0.00 4.17
48 49 6.884836 ACTTCTTCCAGATATTTGTTACCACC 59.115 38.462 0.00 0.00 0.00 4.61
49 50 7.923414 ACTTCTTCCAGATATTTGTTACCAC 57.077 36.000 0.00 0.00 0.00 4.16
50 51 8.934023 AAACTTCTTCCAGATATTTGTTACCA 57.066 30.769 0.00 0.00 0.00 3.25
51 52 9.841880 GAAAACTTCTTCCAGATATTTGTTACC 57.158 33.333 0.00 0.00 0.00 2.85
54 55 9.918630 CATGAAAACTTCTTCCAGATATTTGTT 57.081 29.630 0.00 0.00 0.00 2.83
55 56 8.031277 GCATGAAAACTTCTTCCAGATATTTGT 58.969 33.333 0.00 0.00 0.00 2.83
56 57 8.248945 AGCATGAAAACTTCTTCCAGATATTTG 58.751 33.333 0.00 0.00 0.00 2.32
57 58 8.358582 AGCATGAAAACTTCTTCCAGATATTT 57.641 30.769 0.00 0.00 0.00 1.40
58 59 7.951347 AGCATGAAAACTTCTTCCAGATATT 57.049 32.000 0.00 0.00 0.00 1.28
59 60 7.201679 CGAAGCATGAAAACTTCTTCCAGATAT 60.202 37.037 0.00 0.00 40.12 1.63
60 61 6.092670 CGAAGCATGAAAACTTCTTCCAGATA 59.907 38.462 0.00 0.00 40.12 1.98
61 62 5.106396 CGAAGCATGAAAACTTCTTCCAGAT 60.106 40.000 0.00 0.00 40.12 2.90
62 63 4.214119 CGAAGCATGAAAACTTCTTCCAGA 59.786 41.667 0.00 0.00 40.12 3.86
63 64 4.023707 ACGAAGCATGAAAACTTCTTCCAG 60.024 41.667 0.00 0.00 40.12 3.86
64 65 3.882888 ACGAAGCATGAAAACTTCTTCCA 59.117 39.130 0.00 0.00 40.12 3.53
65 66 4.222114 CACGAAGCATGAAAACTTCTTCC 58.778 43.478 0.00 0.00 40.12 3.46
66 67 4.222114 CCACGAAGCATGAAAACTTCTTC 58.778 43.478 0.00 0.00 40.12 2.87
67 68 3.632145 ACCACGAAGCATGAAAACTTCTT 59.368 39.130 0.00 0.00 40.12 2.52
68 69 3.003689 CACCACGAAGCATGAAAACTTCT 59.996 43.478 0.00 0.00 40.12 2.85
69 70 3.003275 TCACCACGAAGCATGAAAACTTC 59.997 43.478 0.00 0.00 39.13 3.01
70 71 2.948979 TCACCACGAAGCATGAAAACTT 59.051 40.909 0.00 0.00 0.00 2.66
71 72 2.571212 TCACCACGAAGCATGAAAACT 58.429 42.857 0.00 0.00 0.00 2.66
72 73 3.300009 CTTCACCACGAAGCATGAAAAC 58.700 45.455 0.00 0.00 44.57 2.43
73 74 3.624326 CTTCACCACGAAGCATGAAAA 57.376 42.857 0.00 0.00 44.57 2.29
82 83 4.893608 TCTGAATTGATCTTCACCACGAA 58.106 39.130 0.00 0.00 31.98 3.85
83 84 4.535526 TCTGAATTGATCTTCACCACGA 57.464 40.909 0.00 0.00 31.98 4.35
84 85 5.385617 GTTTCTGAATTGATCTTCACCACG 58.614 41.667 0.00 0.00 31.98 4.94
85 86 5.385617 CGTTTCTGAATTGATCTTCACCAC 58.614 41.667 0.00 0.00 31.98 4.16
86 87 4.083324 GCGTTTCTGAATTGATCTTCACCA 60.083 41.667 0.00 0.00 31.98 4.17
87 88 4.083324 TGCGTTTCTGAATTGATCTTCACC 60.083 41.667 0.00 0.00 31.98 4.02
88 89 5.034554 TGCGTTTCTGAATTGATCTTCAC 57.965 39.130 0.00 0.00 31.98 3.18
89 90 5.412286 TCATGCGTTTCTGAATTGATCTTCA 59.588 36.000 0.00 0.00 34.14 3.02
90 91 5.872635 TCATGCGTTTCTGAATTGATCTTC 58.127 37.500 0.00 0.00 0.00 2.87
91 92 5.885230 TCATGCGTTTCTGAATTGATCTT 57.115 34.783 0.00 0.00 0.00 2.40
92 93 5.181811 TGTTCATGCGTTTCTGAATTGATCT 59.818 36.000 0.00 0.00 34.18 2.75
93 94 5.393124 TGTTCATGCGTTTCTGAATTGATC 58.607 37.500 0.00 0.00 34.18 2.92
94 95 5.375417 TGTTCATGCGTTTCTGAATTGAT 57.625 34.783 0.00 0.00 34.18 2.57
95 96 4.827304 TGTTCATGCGTTTCTGAATTGA 57.173 36.364 0.00 0.00 34.18 2.57
96 97 5.886715 TTTGTTCATGCGTTTCTGAATTG 57.113 34.783 0.00 0.00 34.18 2.32
97 98 6.925165 AGAATTTGTTCATGCGTTTCTGAATT 59.075 30.769 0.00 0.00 34.18 2.17
98 99 6.449698 AGAATTTGTTCATGCGTTTCTGAAT 58.550 32.000 0.00 0.00 34.18 2.57
99 100 5.830912 AGAATTTGTTCATGCGTTTCTGAA 58.169 33.333 0.00 0.00 0.00 3.02
100 101 5.437289 AGAATTTGTTCATGCGTTTCTGA 57.563 34.783 0.00 0.00 0.00 3.27
101 102 6.418819 AGAAAGAATTTGTTCATGCGTTTCTG 59.581 34.615 0.00 0.00 39.27 3.02
179 180 5.659440 ACAACTTCACACATTTTGTTCCT 57.341 34.783 0.00 0.00 35.67 3.36
228 229 3.511146 CCTCAAACATGTACCCAAATGCT 59.489 43.478 0.00 0.00 0.00 3.79
259 261 8.794335 AAGAAACATGATAGGAAAGGAGTAAC 57.206 34.615 0.00 0.00 0.00 2.50
291 293 0.861837 GTCGAACCTGTGCAAGTCAG 59.138 55.000 0.00 0.00 0.00 3.51
292 294 0.464036 AGTCGAACCTGTGCAAGTCA 59.536 50.000 0.00 0.00 0.00 3.41
307 309 8.943002 AGTTTATTATACAAGGGAACAAAGTCG 58.057 33.333 0.00 0.00 0.00 4.18
353 415 6.434340 GGGAGTTTGATGAAGTTTGAACCTAT 59.566 38.462 0.00 0.00 0.00 2.57
373 435 0.185901 ACAAGTGTTGGCATGGGAGT 59.814 50.000 0.00 0.00 34.12 3.85
397 459 2.885135 AGGTCTCCATGCATTTCACA 57.115 45.000 0.00 0.00 0.00 3.58
467 529 3.472652 TCGAAGCATTACACTTGGTGTT 58.527 40.909 8.61 0.00 45.08 3.32
487 549 7.939588 AGCCTCTTTAATAAATAGTGTGGGATC 59.060 37.037 0.00 0.00 0.00 3.36
581 643 5.529430 CACACTTTGGACAGTAAACCATGTA 59.471 40.000 0.00 0.00 36.02 2.29
584 646 3.317993 GCACACTTTGGACAGTAAACCAT 59.682 43.478 0.00 0.00 36.02 3.55
716 781 6.710744 CAGTCAACCTGGTAGTTTTTAGTCAT 59.289 38.462 0.00 0.00 37.54 3.06
758 823 4.992319 TCACGTCAGAATCACGGTTAAAAT 59.008 37.500 0.00 0.00 41.73 1.82
768 833 0.037326 GGCCACTCACGTCAGAATCA 60.037 55.000 0.00 0.00 0.00 2.57
810 875 2.701606 GCGCCGTTAGCTGTTAGC 59.298 61.111 0.00 0.00 42.84 3.09
830 895 1.905512 GGCTCTAACGACCCCATGT 59.094 57.895 0.00 0.00 0.00 3.21
833 898 3.766691 GCGGCTCTAACGACCCCA 61.767 66.667 0.00 0.00 0.00 4.96
838 903 2.789917 GACGAGCGGCTCTAACGA 59.210 61.111 25.96 0.00 0.00 3.85
949 1020 3.238597 AGAAACAGAAGCAGAGGAGAGT 58.761 45.455 0.00 0.00 0.00 3.24
1038 1109 2.014128 TCGCTCATGTACTCGTCATCA 58.986 47.619 0.00 0.00 0.00 3.07
1237 1315 6.875972 AACAGAAACTAGGGTCTATCACAT 57.124 37.500 0.00 0.00 0.00 3.21
1260 1338 3.807553 TGTCAGATTCAGTCACAAGCAA 58.192 40.909 0.00 0.00 0.00 3.91
1261 1339 3.070015 TCTGTCAGATTCAGTCACAAGCA 59.930 43.478 0.00 0.00 34.86 3.91
1345 1423 5.999205 AGCACATCCTATGAATCTCCTAG 57.001 43.478 0.00 0.00 0.00 3.02
1346 1424 6.556639 AGTAGCACATCCTATGAATCTCCTA 58.443 40.000 0.00 0.00 0.00 2.94
1405 1483 6.946340 TCCACTACATAGCAGAAATTCAAGA 58.054 36.000 0.00 0.00 0.00 3.02
1668 1747 1.777878 ACCCACTCCATAACACCACAA 59.222 47.619 0.00 0.00 0.00 3.33
1817 1896 2.756760 TGATTTGCCAGAGAATCAAGCC 59.243 45.455 0.00 0.00 38.82 4.35
1833 1912 1.285962 ACCAGCTGGCCATACTGATTT 59.714 47.619 33.06 14.75 39.32 2.17
1843 1922 1.826921 CATCATCCACCAGCTGGCC 60.827 63.158 33.06 0.00 40.39 5.36
1882 1961 6.060136 TGTCATGAGATTTGATTCCATCCTC 58.940 40.000 0.00 0.00 0.00 3.71
1936 2015 5.041191 AGTTGCTTCTTCTTCTCCTTCAA 57.959 39.130 0.00 0.00 0.00 2.69
1970 2049 6.506500 TCTCCATTTGAAGCTCAATCTTTC 57.493 37.500 0.00 0.00 36.11 2.62
2106 2185 9.126151 ACGACATTCTCTATCTTCTTATTCTGA 57.874 33.333 0.00 0.00 0.00 3.27
2107 2186 9.743057 AACGACATTCTCTATCTTCTTATTCTG 57.257 33.333 0.00 0.00 0.00 3.02
2112 2191 6.975197 CAGCAACGACATTCTCTATCTTCTTA 59.025 38.462 0.00 0.00 0.00 2.10
2119 2198 4.991153 TCTCAGCAACGACATTCTCTAT 57.009 40.909 0.00 0.00 0.00 1.98
2131 2210 3.691609 CCAACCTTAAGGATCTCAGCAAC 59.308 47.826 28.52 0.00 38.94 4.17
2140 2219 2.926329 ACCCATGACCAACCTTAAGGAT 59.074 45.455 28.52 14.10 38.94 3.24
2214 2293 9.190317 CTCATATATACTTACCATCCACAGCTA 57.810 37.037 0.00 0.00 0.00 3.32
2219 2298 6.384305 AGGCCTCATATATACTTACCATCCAC 59.616 42.308 0.00 0.00 0.00 4.02
2290 2371 8.059461 TCAAAGGTAGTTCATAGGTAGATCAGA 58.941 37.037 0.00 0.00 0.00 3.27
2370 2551 7.391554 AGCAAGAACTTATGATACAACACACAT 59.608 33.333 0.00 0.00 0.00 3.21
2412 2595 7.828717 TCTGAACCTGTGATGAAGCAATTTATA 59.171 33.333 0.00 0.00 0.00 0.98
2582 2768 7.560991 AGATCTATGTGAGATTCAGTTCTGTCT 59.439 37.037 0.00 0.00 45.48 3.41
2935 3135 4.741321 ATAATGCCCATCAACAAGTTGG 57.259 40.909 12.54 0.00 40.78 3.77
2984 3184 1.746615 GGAGAAGCAGCGCATGGAA 60.747 57.895 11.47 0.00 0.00 3.53
3057 3257 4.160642 AGATTGCCATGAGATACAGCAA 57.839 40.909 5.88 5.88 41.47 3.91
3116 3316 1.126488 TTGCCATGCTTTTTGGGTCA 58.874 45.000 0.00 0.00 34.66 4.02
3137 3337 6.493802 AGAAGAAGGTTGTGTAGTAGACATCA 59.506 38.462 0.29 0.00 41.14 3.07
3138 3338 6.926313 AGAAGAAGGTTGTGTAGTAGACATC 58.074 40.000 0.29 0.61 41.14 3.06
3139 3339 6.919775 AGAAGAAGGTTGTGTAGTAGACAT 57.080 37.500 0.29 0.00 41.14 3.06
3140 3340 6.097839 ACAAGAAGAAGGTTGTGTAGTAGACA 59.902 38.462 0.00 0.00 35.55 3.41
3141 3341 6.514063 ACAAGAAGAAGGTTGTGTAGTAGAC 58.486 40.000 0.00 0.00 35.55 2.59
3142 3342 6.726490 ACAAGAAGAAGGTTGTGTAGTAGA 57.274 37.500 0.00 0.00 35.55 2.59
3143 3343 7.883217 TCTACAAGAAGAAGGTTGTGTAGTAG 58.117 38.462 8.12 0.00 39.49 2.57
3144 3344 7.828508 TCTACAAGAAGAAGGTTGTGTAGTA 57.171 36.000 8.12 0.00 39.49 1.82
3145 3345 6.726490 TCTACAAGAAGAAGGTTGTGTAGT 57.274 37.500 8.12 0.00 39.49 2.73
3146 3346 7.155328 ACATCTACAAGAAGAAGGTTGTGTAG 58.845 38.462 0.00 0.00 39.72 2.74
3147 3347 7.062749 ACATCTACAAGAAGAAGGTTGTGTA 57.937 36.000 0.00 0.00 37.46 2.90
3148 3348 5.930135 ACATCTACAAGAAGAAGGTTGTGT 58.070 37.500 0.00 0.00 37.46 3.72
3149 3349 6.260936 ACAACATCTACAAGAAGAAGGTTGTG 59.739 38.462 18.48 4.23 45.86 3.33
3150 3350 6.357367 ACAACATCTACAAGAAGAAGGTTGT 58.643 36.000 15.66 15.66 44.51 3.32
3151 3351 6.867662 ACAACATCTACAAGAAGAAGGTTG 57.132 37.500 14.80 14.80 43.41 3.77
3152 3352 6.263168 CCAACAACATCTACAAGAAGAAGGTT 59.737 38.462 0.00 0.00 31.23 3.50
3153 3353 5.765182 CCAACAACATCTACAAGAAGAAGGT 59.235 40.000 0.00 0.00 0.00 3.50
3154 3354 5.182001 CCCAACAACATCTACAAGAAGAAGG 59.818 44.000 0.00 0.00 0.00 3.46
3155 3355 5.335191 GCCCAACAACATCTACAAGAAGAAG 60.335 44.000 0.00 0.00 0.00 2.85
3156 3356 4.518970 GCCCAACAACATCTACAAGAAGAA 59.481 41.667 0.00 0.00 0.00 2.52
3157 3357 4.072131 GCCCAACAACATCTACAAGAAGA 58.928 43.478 0.00 0.00 0.00 2.87
3158 3358 3.191371 GGCCCAACAACATCTACAAGAAG 59.809 47.826 0.00 0.00 0.00 2.85
3159 3359 3.153919 GGCCCAACAACATCTACAAGAA 58.846 45.455 0.00 0.00 0.00 2.52
3160 3360 2.375174 AGGCCCAACAACATCTACAAGA 59.625 45.455 0.00 0.00 0.00 3.02
3161 3361 2.749621 GAGGCCCAACAACATCTACAAG 59.250 50.000 0.00 0.00 0.00 3.16
3162 3362 2.554344 GGAGGCCCAACAACATCTACAA 60.554 50.000 0.00 0.00 0.00 2.41
3163 3363 1.004277 GGAGGCCCAACAACATCTACA 59.996 52.381 0.00 0.00 0.00 2.74
3164 3364 1.004277 TGGAGGCCCAACAACATCTAC 59.996 52.381 0.00 0.00 40.09 2.59
3165 3365 1.367346 TGGAGGCCCAACAACATCTA 58.633 50.000 0.00 0.00 40.09 1.98
3166 3366 0.482446 TTGGAGGCCCAACAACATCT 59.518 50.000 0.00 0.00 46.94 2.90
3167 3367 3.050089 TTGGAGGCCCAACAACATC 57.950 52.632 0.00 0.00 46.94 3.06
3175 3375 1.000521 CTCTGCATTTGGAGGCCCA 60.001 57.895 0.00 0.00 41.64 5.36
3176 3376 1.755783 CCTCTGCATTTGGAGGCCC 60.756 63.158 6.78 0.00 41.92 5.80
3177 3377 3.930504 CCTCTGCATTTGGAGGCC 58.069 61.111 6.78 0.00 41.92 5.19
3180 3380 3.441572 CCTACAAACCTCTGCATTTGGAG 59.558 47.826 13.61 13.61 43.61 3.86
3181 3381 3.073798 TCCTACAAACCTCTGCATTTGGA 59.926 43.478 13.50 5.54 39.61 3.53
3182 3382 3.191371 GTCCTACAAACCTCTGCATTTGG 59.809 47.826 13.50 6.80 39.61 3.28
3183 3383 3.820467 TGTCCTACAAACCTCTGCATTTG 59.180 43.478 8.59 8.59 40.83 2.32
3184 3384 4.074970 CTGTCCTACAAACCTCTGCATTT 58.925 43.478 0.00 0.00 0.00 2.32
3185 3385 3.073062 ACTGTCCTACAAACCTCTGCATT 59.927 43.478 0.00 0.00 0.00 3.56
3186 3386 2.639839 ACTGTCCTACAAACCTCTGCAT 59.360 45.455 0.00 0.00 0.00 3.96
3187 3387 2.047061 ACTGTCCTACAAACCTCTGCA 58.953 47.619 0.00 0.00 0.00 4.41
3188 3388 2.841442 ACTGTCCTACAAACCTCTGC 57.159 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.